Query         gi|254781072|ref|YP_003065485.1| hypothetical protein CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 190
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:14:26 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781072.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2gsva1 a.23.7.1 (A:3-69) Hypo  79.6     1.7 0.00012   21.5   5.0   43   89-135    24-66  (67)
  2 d1oywa3 c.37.1.19 (A:207-406)   16.5      24  0.0018   13.4   1.2   21  140-160   179-199 (200)
  3 d2i09a2 d.327.1.1 (A:108-226)   14.0      29  0.0021   12.9   1.1   28   21-54     58-85  (119)
  4 d1q1va_ a.159.4.1 (A:) DEK C-t  13.1      34  0.0025   12.4   2.5   18  130-147    51-68  (70)
  5 d1kl9a1 a.60.14.1 (A:89-182) E  12.4      35  0.0026   12.3   2.5   10  152-161    74-83  (94)
  6 d1q8ca_ a.79.1.2 (A:) Hypothet  11.8      23  0.0017   13.6   0.1   41  107-147    19-63  (140)
  7 d1z0xa1 a.4.1.9 (A:4-71) Trans  10.7      36  0.0026   12.2   0.7   49  110-158    20-68  (68)
  8 d1pfva3 g.41.1.1 (A:141-175) M  10.3      21  0.0015   13.9  -0.6   16  150-165    16-31  (35)
  9 d3bvua3 c.6.2.1 (A:31-411) Gol  10.3      41   0.003   11.8   4.4   88   85-176    68-160 (381)
 10 d1gdta1 a.4.1.2 (A:141-183) ga   8.6      48  0.0035   11.4   1.0   14  101-114    11-24  (43)

No 1  
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]}
Probab=79.58  E-value=1.7  Score=21.51  Aligned_cols=43  Identities=35%  Similarity=0.581  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999515671020199999999999998889999
Q gi|254781072|r   89 YFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKK  135 (190)
Q Consensus        89 yfkaltkyyksvvaelrefglgksaieieeitkavdtltrayneykk  135 (190)
                      -..|+..||+|||..|-.-.|.|.|.-|..    ...|..|||.-++
T Consensus        24 kIhAmNaYYrsVvstlvqDqltKNa~vlkR----iqHLdEAY~KVk~   66 (67)
T d2gsva1          24 KIHAMNSYYRSVVSTLVQDQLTKNAVVLKR----IQHLDEAYNKVKR   66 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSSCHHHHHHH----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHC
T ss_conf             999999999999999999999741899999----9999999998755


No 2  
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=16.46  E-value=24  Score=13.43  Aligned_cols=21  Identities=33%  Similarity=0.781  Sum_probs=14.5

Q ss_pred             HHHHHHHHCHHCCCCCCCHHH
Q ss_conf             999999712102330101246
Q gi|254781072|r  140 LIEEFIELGFDQCDECDLCSE  160 (190)
Q Consensus       140 lieefielgfdqcdecdlcse  160 (190)
                      |.+.|-+-.-..|+.||.|..
T Consensus       179 ll~~fge~~~~~C~~CD~C~~  199 (200)
T d1oywa3         179 LLNYFGEGRQEPCGNCDICLD  199 (200)
T ss_dssp             HHHHTTCCCCSCCSCBHHHHS
T ss_pred             HHHHCCCCCCCCCCCCCCCCC
T ss_conf             999859999888999999999


No 3  
>d2i09a2 d.327.1.1 (A:108-226) Phosphopentomutase DeoB {Streptococcus mutans [TaxId: 1309]}
Probab=13.95  E-value=29  Score=12.91  Aligned_cols=28  Identities=36%  Similarity=0.504  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0234222044444399999999999999998776
Q gi|254781072|r   21 GSFLQIRSKESVINKEFVTKVEELYEKAQKAHKK   54 (190)
Q Consensus        21 gsflqirskesvinkefvtkveelyekaqkahkk   54 (190)
                      .|.+||-..|.++.      +|+||+-.+.|.+-
T Consensus        58 DSVfQIAaHE~~~~------le~Ly~~C~~aR~~   85 (119)
T d2i09a2          58 DPVLQIAAHEDVIP------LDELYRICEYARSI   85 (119)
T ss_dssp             SSEEEEECCTTTSC------HHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCC------HHHHHHHHHHHHHH
T ss_conf             76056665335049------99999999999998


No 4  
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.11  E-value=34  Score=12.44  Aligned_cols=18  Identities=33%  Similarity=0.473  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             889999999999999971
Q gi|254781072|r  130 YNEYKKEIRELIEEFIEL  147 (190)
Q Consensus       130 yneykkeirelieefiel  147 (190)
                      ..++|..|++.|++|+-+
T Consensus        51 L~~rK~~I~~~I~~~Ls~   68 (70)
T d1q1va_          51 LTERKDFIKTTVKELISL   68 (70)
T ss_dssp             CSHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHC
T ss_conf             488899999999999714


No 5  
>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.43  E-value=35  Score=12.31  Aligned_cols=10  Identities=30%  Similarity=0.431  Sum_probs=4.1

Q ss_pred             CCCCCCHHHH
Q ss_conf             3301012467
Q gi|254781072|r  152 CDECDLCSEK  161 (190)
Q Consensus       152 cdecdlcsek  161 (190)
                      -|+||+-.+-
T Consensus        74 l~~l~l~~~v   83 (94)
T d1kl9a1          74 LDSLDLNEDE   83 (94)
T ss_dssp             GTTSSCCHHH
T ss_pred             CCCCCCCHHH
T ss_conf             0368999899


No 6  
>d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma genitalium [TaxId: 2097]}
Probab=11.80  E-value=23  Score=13.55  Aligned_cols=41  Identities=37%  Similarity=0.261  Sum_probs=18.4

Q ss_pred             CCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q ss_conf             15671020199999999999998889999999----999999971
Q gi|254781072|r  107 FGLGKSAIEIEEITKAVDTLTRAYNEYKKEIR----ELIEEFIEL  147 (190)
Q Consensus       107 fglgksaieieeitkavdtltrayneykkeir----elieefiel  147 (190)
                      |-|.|.|-.|..---..|+-.|..|++.|+|-    |-+-+|+++
T Consensus        19 fflpk~a~~iqa~fl~yd~~er~ln~wqk~ivk~fse~~~~f~~~   63 (140)
T d1q8ca_          19 FFLPKEAEVIQADFLEYDTKERQLNEWQKLIVKAFSENIFSFQKK   63 (140)
T ss_dssp             GGCCCCHHHHHHHHHHTCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             967450999999998347864554589999999999999999999


No 7  
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=10.73  E-value=36  Score=12.25  Aligned_cols=49  Identities=18%  Similarity=0.259  Sum_probs=31.4

Q ss_pred             CCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCH
Q ss_conf             7102019999999999999888999999999999997121023301012
Q gi|254781072|r  110 GKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLC  158 (190)
Q Consensus       110 gksaieieeitkavdtltrayneykkeirelieefielgfdqcdecdlc  158 (190)
                      |-.++-+..|.++...-..+..-|=+.-.+|+.+.++-.+++-.+--||
T Consensus        20 G~~~~t~~~Ia~~agvs~~~iy~hF~~K~~L~~~~~~~~~~~~~~~alc   68 (68)
T d1z0xa1          20 TLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHFQEPALC   68 (68)
T ss_dssp             CGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9231679999998772656899962999999999999999654534339


No 8  
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}
Probab=10.32  E-value=21  Score=13.89  Aligned_cols=16  Identities=25%  Similarity=0.717  Sum_probs=8.3

Q ss_pred             HCCCCCCCHHHHHHHH
Q ss_conf             0233010124678888
Q gi|254781072|r  150 DQCDECDLCSEKADVI  165 (190)
Q Consensus       150 dqcdecdlcsekadvi  165 (190)
                      ||||.|..--+-.|.|
T Consensus        16 DqCe~CG~~~~p~eLi   31 (35)
T d1pfva3          16 DNCEVCGATYSPTELI   31 (35)
T ss_dssp             TBCTTTCCBCCGGGSE
T ss_pred             CCHHHCCCCCCHHHHC
T ss_conf             5277708707899952


No 9  
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=10.30  E-value=41  Score=11.84  Aligned_cols=88  Identities=16%  Similarity=0.145  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCHHCCCCCCCHH
Q ss_conf             788999999999-99999999951567102019999999999999888999999999999----9971210233010124
Q gi|254781072|r   85 TELKYFKALTKY-YKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE----FIELGFDQCDECDLCS  159 (190)
Q Consensus        85 telkyfkaltky-yksvvaelrefglgksaieieeitkavdtltrayneykkeireliee----fielgfdqcdecdlcs  159 (190)
                      |--.|+...+.+ +.+++..|.+..--+  --..+++-..+-+...+.+.+..+++||.+    |+--|+-|.|+.-.+.
T Consensus        68 t~~e~~~~~~~~il~~~l~~l~~~p~~~--F~~~~~~~~~~w~~~~~pe~~~~vk~lV~~GrlEivgg~wv~~De~~~~~  145 (381)
T d3bvua3          68 TFEEYYQHDTKHILSNALRHLHDNPEMK--FIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHW  145 (381)
T ss_dssp             CHHHHHHHTHHHHHHHHHHHHHHCTTCC--EEECCHHHHHHHHTTSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCE--EEEECHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCH
T ss_conf             5999999999999999999998799977--99835389999999749999999999998798799687121463457997


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             67888887778999999
Q gi|254781072|r  160 EKADVIQKKRIAFEMVE  176 (190)
Q Consensus       160 ekadviqkkriafemve  176 (190)
                      |  +.|..-.+.-....
T Consensus       146 e--s~Irql~~G~~~l~  160 (381)
T d3bvua3         146 R--NVLLQLTEGQTWLK  160 (381)
T ss_dssp             H--HHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHHH
T ss_conf             9--99999999999999


No 10 
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=8.59  E-value=48  Score=11.40  Aligned_cols=14  Identities=43%  Similarity=0.610  Sum_probs=0.0

Q ss_pred             HHHHHHCCCCCHHE
Q ss_conf             99999515671020
Q gi|254781072|r  101 VAELREFGLGKSAI  114 (190)
Q Consensus       101 vaelrefglgksai  114 (190)
                      |-+|++-|+|.++|
T Consensus        11 V~~L~~~G~gat~I   24 (43)
T d1gdta1          11 VLNMWQQGLGASHI   24 (43)
T ss_dssp             HHHHHHTTCCHHHH
T ss_pred             HHHHHHCCCCHHHH
T ss_conf             99999948989999


Done!