Query gi|254781072|ref|YP_003065485.1| hypothetical protein CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 190 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:14:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781072.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2gsva1 a.23.7.1 (A:3-69) Hypo 79.6 1.7 0.00012 21.5 5.0 43 89-135 24-66 (67) 2 d1oywa3 c.37.1.19 (A:207-406) 16.5 24 0.0018 13.4 1.2 21 140-160 179-199 (200) 3 d2i09a2 d.327.1.1 (A:108-226) 14.0 29 0.0021 12.9 1.1 28 21-54 58-85 (119) 4 d1q1va_ a.159.4.1 (A:) DEK C-t 13.1 34 0.0025 12.4 2.5 18 130-147 51-68 (70) 5 d1kl9a1 a.60.14.1 (A:89-182) E 12.4 35 0.0026 12.3 2.5 10 152-161 74-83 (94) 6 d1q8ca_ a.79.1.2 (A:) Hypothet 11.8 23 0.0017 13.6 0.1 41 107-147 19-63 (140) 7 d1z0xa1 a.4.1.9 (A:4-71) Trans 10.7 36 0.0026 12.2 0.7 49 110-158 20-68 (68) 8 d1pfva3 g.41.1.1 (A:141-175) M 10.3 21 0.0015 13.9 -0.6 16 150-165 16-31 (35) 9 d3bvua3 c.6.2.1 (A:31-411) Gol 10.3 41 0.003 11.8 4.4 88 85-176 68-160 (381) 10 d1gdta1 a.4.1.2 (A:141-183) ga 8.6 48 0.0035 11.4 1.0 14 101-114 11-24 (43) No 1 >d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]} Probab=79.58 E-value=1.7 Score=21.51 Aligned_cols=43 Identities=35% Similarity=0.581 Sum_probs=35.0 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999515671020199999999999998889999 Q gi|254781072|r 89 YFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKK 135 (190) Q Consensus 89 yfkaltkyyksvvaelrefglgksaieieeitkavdtltrayneykk 135 (190) -..|+..||+|||..|-.-.|.|.|.-|.. ...|..|||.-++ T Consensus 24 kIhAmNaYYrsVvstlvqDqltKNa~vlkR----iqHLdEAY~KVk~ 66 (67) T d2gsva1 24 KIHAMNSYYRSVVSTLVQDQLTKNAVVLKR----IQHLDEAYNKVKR 66 (67) T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCHHHHHHH----HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHC T ss_conf 999999999999999999999741899999----9999999998755 No 2 >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Probab=16.46 E-value=24 Score=13.43 Aligned_cols=21 Identities=33% Similarity=0.781 Sum_probs=14.5 Q ss_pred HHHHHHHHCHHCCCCCCCHHH Q ss_conf 999999712102330101246 Q gi|254781072|r 140 LIEEFIELGFDQCDECDLCSE 160 (190) Q Consensus 140 lieefielgfdqcdecdlcse 160 (190) |.+.|-+-.-..|+.||.|.. T Consensus 179 ll~~fge~~~~~C~~CD~C~~ 199 (200) T d1oywa3 179 LLNYFGEGRQEPCGNCDICLD 199 (200) T ss_dssp HHHHTTCCCCSCCSCBHHHHS T ss_pred HHHHCCCCCCCCCCCCCCCCC T ss_conf 999859999888999999999 No 3 >d2i09a2 d.327.1.1 (A:108-226) Phosphopentomutase DeoB {Streptococcus mutans [TaxId: 1309]} Probab=13.95 E-value=29 Score=12.91 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0234222044444399999999999999998776 Q gi|254781072|r 21 GSFLQIRSKESVINKEFVTKVEELYEKAQKAHKK 54 (190) Q Consensus 21 gsflqirskesvinkefvtkveelyekaqkahkk 54 (190) .|.+||-..|.++. +|+||+-.+.|.+- T Consensus 58 DSVfQIAaHE~~~~------le~Ly~~C~~aR~~ 85 (119) T d2i09a2 58 DPVLQIAAHEDVIP------LDELYRICEYARSI 85 (119) T ss_dssp SSEEEEECCTTTSC------HHHHHHHHHHHHHH T ss_pred CCEEEEEECCCCCC------HHHHHHHHHHHHHH T ss_conf 76056665335049------99999999999998 No 4 >d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=13.11 E-value=34 Score=12.44 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 889999999999999971 Q gi|254781072|r 130 YNEYKKEIRELIEEFIEL 147 (190) Q Consensus 130 yneykkeirelieefiel 147 (190) ..++|..|++.|++|+-+ T Consensus 51 L~~rK~~I~~~I~~~Ls~ 68 (70) T d1q1va_ 51 LTERKDFIKTTVKELISL 68 (70) T ss_dssp CSHHHHHHHHHHHHHHHS T ss_pred CHHHHHHHHHHHHHHHHC T ss_conf 488899999999999714 No 5 >d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId: 9606]} Probab=12.43 E-value=35 Score=12.31 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=4.1 Q ss_pred CCCCCCHHHH Q ss_conf 3301012467 Q gi|254781072|r 152 CDECDLCSEK 161 (190) Q Consensus 152 cdecdlcsek 161 (190) -|+||+-.+- T Consensus 74 l~~l~l~~~v 83 (94) T d1kl9a1 74 LDSLDLNEDE 83 (94) T ss_dssp GTTSSCCHHH T ss_pred CCCCCCCHHH T ss_conf 0368999899 No 6 >d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma genitalium [TaxId: 2097]} Probab=11.80 E-value=23 Score=13.55 Aligned_cols=41 Identities=37% Similarity=0.261 Sum_probs=18.4 Q ss_pred CCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH Q ss_conf 15671020199999999999998889999999----999999971 Q gi|254781072|r 107 FGLGKSAIEIEEITKAVDTLTRAYNEYKKEIR----ELIEEFIEL 147 (190) Q Consensus 107 fglgksaieieeitkavdtltrayneykkeir----elieefiel 147 (190) |-|.|.|-.|..---..|+-.|..|++.|+|- |-+-+|+++ T Consensus 19 fflpk~a~~iqa~fl~yd~~er~ln~wqk~ivk~fse~~~~f~~~ 63 (140) T d1q8ca_ 19 FFLPKEAEVIQADFLEYDTKERQLNEWQKLIVKAFSENIFSFQKK 63 (140) T ss_dssp GGCCCCHHHHHHHHHHTCCTTTCCCHHHHHHHHHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 967450999999998347864554589999999999999999999 No 7 >d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]} Probab=10.73 E-value=36 Score=12.25 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=31.4 Q ss_pred CCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCH Q ss_conf 7102019999999999999888999999999999997121023301012 Q gi|254781072|r 110 GKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLC 158 (190) Q Consensus 110 gksaieieeitkavdtltrayneykkeirelieefielgfdqcdecdlc 158 (190) |-.++-+..|.++...-..+..-|=+.-.+|+.+.++-.+++-.+--|| T Consensus 20 G~~~~t~~~Ia~~agvs~~~iy~hF~~K~~L~~~~~~~~~~~~~~~alc 68 (68) T d1z0xa1 20 TLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHFQEPALC 68 (68) T ss_dssp CGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTCCCCCCC T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC T ss_conf 9231679999998772656899962999999999999999654534339 No 8 >d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} Probab=10.32 E-value=21 Score=13.89 Aligned_cols=16 Identities=25% Similarity=0.717 Sum_probs=8.3 Q ss_pred HCCCCCCCHHHHHHHH Q ss_conf 0233010124678888 Q gi|254781072|r 150 DQCDECDLCSEKADVI 165 (190) Q Consensus 150 dqcdecdlcsekadvi 165 (190) ||||.|..--+-.|.| T Consensus 16 DqCe~CG~~~~p~eLi 31 (35) T d1pfva3 16 DNCEVCGATYSPTELI 31 (35) T ss_dssp TBCTTTCCBCCGGGSE T ss_pred CCHHHCCCCCCHHHHC T ss_conf 5277708707899952 No 9 >d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=10.30 E-value=41 Score=11.84 Aligned_cols=88 Identities=16% Similarity=0.145 Sum_probs=51.9 Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCHHCCCCCCCHH Q ss_conf 788999999999-99999999951567102019999999999999888999999999999----9971210233010124 Q gi|254781072|r 85 TELKYFKALTKY-YKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE----FIELGFDQCDECDLCS 159 (190) Q Consensus 85 telkyfkaltky-yksvvaelrefglgksaieieeitkavdtltrayneykkeireliee----fielgfdqcdecdlcs 159 (190) |--.|+...+.+ +.+++..|.+..--+ --..+++-..+-+...+.+.+..+++||.+ |+--|+-|.|+.-.+. T Consensus 68 t~~e~~~~~~~~il~~~l~~l~~~p~~~--F~~~~~~~~~~w~~~~~pe~~~~vk~lV~~GrlEivgg~wv~~De~~~~~ 145 (381) T d3bvua3 68 TFEEYYQHDTKHILSNALRHLHDNPEMK--FIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHW 145 (381) T ss_dssp CHHHHHHHTHHHHHHHHHHHHHHCTTCC--EEECCHHHHHHHHTTSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCE--EEEECHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCH T ss_conf 5999999999999999999998799977--99835389999999749999999999998798799687121463457997 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 67888887778999999 Q gi|254781072|r 160 EKADVIQKKRIAFEMVE 176 (190) Q Consensus 160 ekadviqkkriafemve 176 (190) | +.|..-.+.-.... T Consensus 146 e--s~Irql~~G~~~l~ 160 (381) T d3bvua3 146 R--NVLLQLTEGQTWLK 160 (381) T ss_dssp H--HHHHHHHHHHHHHH T ss_pred H--HHHHHHHHHHHHHH T ss_conf 9--99999999999999 No 10 >d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]} Probab=8.59 E-value=48 Score=11.40 Aligned_cols=14 Identities=43% Similarity=0.610 Sum_probs=0.0 Q ss_pred HHHHHHCCCCCHHE Q ss_conf 99999515671020 Q gi|254781072|r 101 VAELREFGLGKSAI 114 (190) Q Consensus 101 vaelrefglgksai 114 (190) |-+|++-|+|.++| T Consensus 11 V~~L~~~G~gat~I 24 (43) T d1gdta1 11 VLNMWQQGLGASHI 24 (43) T ss_dssp HHHHHHTTCCHHHH T ss_pred HHHHHHCCCCHHHH T ss_conf 99999948989999 Done!