RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781072|ref|YP_003065485.1| hypothetical protein
CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62]
(190 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 45.3 bits (107), Expect = 9e-06
Identities = 29/201 (14%), Positives = 53/201 (26%), Gaps = 70/201 (34%)
Query: 18 AKFGSFLQIRSKESVINKEFVTKVEELYEKAQK-----AHKKRDKVYGAYDKVSSHKKSP 72
+F L ++ + E T E L K + G +D+V
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAE-L---VGKFLGYVSSLVEPSKVGQFDQV------L 84
Query: 73 KELSKAFYIDF------------------RTELKYFKALTKYYKSVVAELRE-------- 106
F + T +K + + Y + + R
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 107 ---------------FGLGKSAIE--IEEITKAVDTLTRAYNEYKKEIRELI----EEFI 145
FG G+ + EE L Y Y + +LI E
Sbjct: 145 LFRAVGEGNAQLVAIFG-GQGNTDDYFEE-------LRDLYQTYHVLVGDLIKFSAETLS 196
Query: 146 ELGFDQCDECDLCSEKADVIQ 166
EL D + ++ ++++
Sbjct: 197 ELIRTTLDAEKVFTQGLNILE 217
Score = 29.9 bits (67), Expect = 0.36
Identities = 32/166 (19%), Positives = 51/166 (30%), Gaps = 57/166 (34%)
Query: 42 EELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKSVV 101
E + +KA ++ F+I R Y T S++
Sbjct: 290 ESFFVSVRKA-----------------------ITVLFFIGVRCYEAY--PNTSLPPSIL 324
Query: 102 AELREFGLGK-------SAIEIEEITKAVDTLTRAYNEYKK-EIRELI---EEFI----- 145
+ E G S + E++ V+ K+ EI L+ + +
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVSGPP 383
Query: 146 -EL-GFDQCDECDLCSEKADV-IQKKRIAFEMVEREFAEKLEGKFV 188
L G + L KA + + RI F ER KL KF
Sbjct: 384 QSLYGLNL----TLRKAKAPSGLDQSRIPFS--ER----KL--KFS 417
Score = 29.9 bits (67), Expect = 0.41
Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 58/180 (32%)
Query: 15 IP-DAKF-----GSFLQIRSKESVINKEFVTKVEELYEKAQ--KAHKKRDKV----YGAY 62
IP DA F G + + S V++ E + VE ++ + + RD++ YG
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIE--SLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 63 DKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEIT-- 120
+P ++ +F + L+Y + E+ + +E ++
Sbjct: 1811 ------AINPGRVAASFS---QEALQYVVERVGKRTGWLVEIVNYN-----VENQQYVAA 1856
Query: 121 ---KAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKADVIQ-KKRIAFEMVE 176
+A+DT+T N FI+L +K D+I+ +K ++ E VE
Sbjct: 1857 GDLRALDTVTNVLN------------FIKL------------QKIDIIELQKSLSLEEVE 1892
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, structural genomics,
center for structural genomics of infectious diseases;
HET: SO4; 2.89A {Bacillus anthracis}
Length = 427
Score = 30.1 bits (67), Expect = 0.31
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 38 VTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYY 97
V ++ + + + D K + + AF R +Y
Sbjct: 104 VIYLDSFEKTMSNIFFTENVKHLYLDLECREWKGTETKTLAFAKHVRE--QYPHVTIGNV 161
Query: 98 KSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEF 144
+ ELR F K+ EIE I +A+ K + + E+
Sbjct: 162 YPNICELRVF---KTDEEIEIIKEAIAVTKDGIYNVLKHAKADMMEY 205
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Bacteroides vulgatus atcc 8482}
Length = 310
Score = 30.3 bits (68), Expect = 0.32
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 11/76 (14%)
Query: 109 LGKSAIEIEEITKAV-DTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKADVIQK 167
G S + I + + + ++I + E + D+ + C E A ++
Sbjct: 58 FGNSTVNSHTINYHIGVNVETLFGLLTEQILAGLCFGQENSKNATDDNEPCRETASLLA- 116
Query: 168 KRIAFEMVEREFAEKL 183
F KL
Sbjct: 117 ---------ARFISKL 123
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate
metabolism, cytoplasm, fucose metabolism, manganese,
metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A
3a9t_A*
Length = 595
Score = 28.6 bits (63), Expect = 0.87
Identities = 8/74 (10%), Positives = 28/74 (37%)
Query: 105 REFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKADV 164
G+ +++ E + ++ EY++ ++ + E + D E+ +
Sbjct: 204 NYLGMRNEYVDMSEFVRRIELGIYDKEEYERALKWVKENCKVGPDNNRDGFKRTEEQKEK 263
Query: 165 IQKKRIAFEMVERE 178
+ + ++ R+
Sbjct: 264 DWEISVKMALIARD 277
>1zj8_A Probable ferredoxin-dependent nitrite reductase NIRA; sulfite,
siroheme, Fe4-S4, Cys- Tyr covalent bond; HET: SRM;
2.80A {Mycobacterium tuberculosis H37RV} SCOP: d.58.36.1
d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Length = 566
Score = 28.6 bits (63), Expect = 0.98
Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 109 LGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIE-LGFDQ 151
L + + +E+ +D + R + +++ E E +++ D
Sbjct: 522 LRQHKVTSDELGDYIDRVVRNFVKHRSE-GERFAQWVIRAEEDD 564
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 28.5 bits (62), Expect = 1.00
Identities = 10/61 (16%), Positives = 24/61 (39%)
Query: 86 ELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFI 145
++ + L ++ K VV +FG EE+ + + + K + + + +
Sbjct: 253 DIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLL 312
Query: 146 E 146
E
Sbjct: 313 E 313
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728}
Length = 397
Score = 27.9 bits (60), Expect = 1.6
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 30 ESVINKEFVTKVEELYEKAQKAH--KKRDKVYGAYDKVSSHKKSPKELSKAF------YI 81
E++ + ++ ++ + YEK K +K + + A +K+ S L K +
Sbjct: 313 EAIESNDYSPQMMQKYEKLIKERFERKHLRNWVAKEKL--AMLSDDTLDKLVDIVSEQVL 370
Query: 82 DFRTELKYFKALTKYYKSVVAELREF 107
+ KA+ + Y VV EL +
Sbjct: 371 TTISVEAILKAIAEKYPEVVKELEDL 396
>1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron
transfer, oxidoreductase, acetyl-COA formation,
WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica}
SCOP: e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A
3git_A
Length = 729
Score = 27.8 bits (62), Expect = 1.6
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 31 SVINKEFVT------KVEELYEKAQKAHKKRDK 57
+++++ VT KV+E E A++ +K+RD
Sbjct: 458 AIVDRVQVTIFTDEAKVKEYMEVAREKYKERDD 490
>1vp4_A Aminotransferase, putative; TM1131, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga
maritima MSB8} SCOP: c.67.1.1
Length = 425
Score = 27.8 bits (60), Expect = 1.8
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 109 LGKSAIEIEEITKAVDTLTRAYNEYKKE 136
L E+I + + L EY KE
Sbjct: 394 LSFCLPPDEKIVEGIKRLREVVLEYGKE 421
>3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET: ANP; 2.40A
{Pyrococcus horikoshii} PDB: 3i72_A 3i73_A* 3ikj_A
1vdz_A
Length = 588
Score = 27.7 bits (61), Expect = 1.8
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 60 GAYDKVSSHKKSPKELS-----KAFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAI 114
A+D+V ++ K+++ FY + L + K V E E G K
Sbjct: 506 DAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINRGVPLEEIAKLPVRE--EIGRMKFER 563
Query: 115 EIEEITKAVDTLTRAYNEYKKEIRELIEEF 144
++ +I +D + ++ EL +++
Sbjct: 564 DVSKIRSLID-------KTNEQFEELFKKY 586
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 27.4 bits (60), Expect = 1.9
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 91 KALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFD 150
+A+ Y + +A LR K ++++I + A+ E + R ++ + G
Sbjct: 335 EAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQ 394
Query: 151 Q----CDECDLCSEKADVIQKKRIAFEMVER 177
+ CD C ++ D +IA + R
Sbjct: 395 EPCGNCDICLDPPKQYDGSTDAQIALSTIGR 425
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 27.6 bits (61), Expect = 2.0
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 13 SKIPDAKFGSFLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVY 59
SK PD FL +++ +V+++ F + L + R K
Sbjct: 1116 SKAPDGSVEEFLMAQNRFAVLDRSFPEDAKRLRAQVAHELDVRFKEL 1162
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics; HET: MSE LLP PE4;
1.75A {Porphyromonas gingivalis W83}
Length = 437
Score = 27.2 bits (59), Expect = 2.4
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 116 IEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKADVIQKKRIAFEMV 175
++ + EY ++ R + + F++ GF+ + D AD M
Sbjct: 323 LKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKGMD 382
Query: 176 EREFAEKL--EGKFVR 189
+ EK G
Sbjct: 383 SSKLIEKFVRYGMCAI 398
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 27.3 bits (60), Expect = 2.4
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 136 EIRELIEEFIELGFDQCDECDLCSEKADV-------IQKKRIAFEMVEREFAEKLEG 185
EI +L +E IE D C + KK + + E+E + L G
Sbjct: 386 EIYDLTKELIESCVKNKDLKSPCE--LAIEKTFSFGKTKKNVKINIFEKEEGKNLLG 440
Score = 26.1 bits (57), Expect = 4.6
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 100 VVAELREFGLGKSAIEIEEI--TKAVD-TLTRAYNEYKKE--IRELIEE----FIELGFD 150
+ E+ K+ IE +++ K ++ + R + K + + IE ++ +GF+
Sbjct: 25 EIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFE 84
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (59), Expect = 2.5
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 28/108 (25%)
Query: 85 TELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEF 144
T ++ K +T YY+S+ A ++G S + + +N+ K+ E + EF
Sbjct: 507 TTSRFSKQVTDYYQSIYA---KYGAKGSTL-----------IVVPFNQGSKQDVEALIEF 552
Query: 145 IE-------LGFDQCDECDLCSEKADVIQKKRIAFEMVE--REFAEKL 183
I LG+D D A I ++ I E ++ EFA ++
Sbjct: 553 IYDTEKNGGLGWD----LDAIIPFA-AIPEQGIELEHIDSKSEFAHRI 595
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3d6u_A* 3d6v_A* 1u7x_A 2hgz_A*
Length = 314
Score = 27.0 bits (59), Expect = 2.7
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 62 YDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITK 121
K+ + ++ KYF Y + +FG + EE+
Sbjct: 223 RAKIKKAYCPAGVVEGNPIMEI---AKYFL----EYPLTIKRPEKFGGDLTVNSYEELES 275
Query: 122 AVDTLTRAYNEYKKEIRELIEEFIE 146
K + E + + +E
Sbjct: 276 LFKNKELHPMYLKNAVAEELIKILE 300
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural
genomics, PSI, protein structure initiative; 1.90A
{Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Length = 80
Score = 27.0 bits (59), Expect = 3.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 80 YIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKE 136
+I+ A+ YY+SVV+ L + L K+A+ + K + L AYN+ K+
Sbjct: 17 HIEMNQSEDKIHAMNSYYRSVVSTLVQDQLTKNAV----VLKRIQHLDEAYNKVKRG 69
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89}
Length = 375
Score = 26.6 bits (58), Expect = 3.3
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 113 AIEIEEITKAVDTLTRAYNEYKKE 136
A E E + K ++ L++ + KE
Sbjct: 351 ACEQETLIKGLEKLSQFLRRFDKE 374
>3bhg_A Adenylosuccinate lyase; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Length = 459
Score = 26.5 bits (57), Expect = 3.6
Identities = 17/139 (12%), Positives = 38/139 (27%), Gaps = 27/139 (19%)
Query: 73 KELSKAF----YIDFR--TELKYFKALTKY---------YKSVVAELREFGLGKSAIEIE 117
+ LS F +R E+K+F++L L + + E E
Sbjct: 24 RALSPYFSEFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNESEAE 83
Query: 118 EITKAVDTLTRAYNEYKKEIRELIEEFIELG------------FDQCDECDLCSEKADVI 165
+I + + +++ +E +L D + K +
Sbjct: 84 KIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIA 143
Query: 166 QKKRIAFEMVEREFAEKLE 184
Q + + +
Sbjct: 144 QVIQPTIAEIMGSITLLGK 162
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H3/H4 chaperone, PITA-bread
fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 26.6 bits (58), Expect = 4.1
Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 13/127 (10%)
Query: 42 EELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKSVV 101
++L+EK + + +K G + K + K E F ++E A +
Sbjct: 118 KKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFE-PVKSEFNLVDA-----SLGL 171
Query: 102 AELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEK 161
A+ K E+ I A ++Y + + +I+ G + +
Sbjct: 172 AKCLAI---KDEQELANIKGASRVSVAVMSKY---FVDELSTYIDQG-KKITHSKFSDQM 224
Query: 162 ADVIQKK 168
+I +
Sbjct: 225 ESLIDNE 231
>3dxl_A Allergen AED A 2; odorant-binding protein, all-helical, secreted;
1.30A {Aedes aegypti} PDB: 3dy9_A 3dye_A* 3dzt_A*
Length = 303
Score = 26.4 bits (58), Expect = 4.2
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 8/97 (8%)
Query: 17 DAKFGSF------LQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKK 70
D F Q ++ S+ K V ++ + V+ AYD V HK
Sbjct: 62 DPVAQKFDASVIQEQFKAYPSLGEKSKVEAYANAVKQLPSTNNDCAAVFKAYDPV--HKA 119
Query: 71 SPKELSKAFYIDFRTELKYFKALTKYYKSVVAELREF 107
F+ + ++ L K + EF
Sbjct: 120 HKDTSKNLFHGNKELTKGLYEKLGKDIRQKKQSYFEF 156
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter
pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Length = 371
Score = 26.5 bits (58), Expect = 4.4
Identities = 8/60 (13%), Positives = 19/60 (31%)
Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKADVIQKKRI 170
K+ E + K + T AY + E + + + + +++ I
Sbjct: 285 KNFDEAIDYIKYLHTHKNAYLDMLYENPLNTLDGKAYFYQNLSFKKILAFFKTILENDTI 344
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase/tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 26.3 bits (57), Expect = 4.4
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 62 YDKVSSHKKSPKELS----KAFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIE 117
K++S SP + +F ++ K T +++ + +FG + E
Sbjct: 247 KKKINSAFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFE 306
Query: 118 EITKAVDTLTRAYNEYKKEIRELIEEFIE 146
E+ A + + K + + I E +E
Sbjct: 307 EMKLAFKEEKLSPPDLKIGVADAINELLE 335
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP}
Length = 517
Score = 26.4 bits (57), Expect = 4.4
Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 5/125 (4%)
Query: 23 FLQIRSKESVI---NKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAF 79
K +I +F KV + + + + + D+V K A+
Sbjct: 71 VANGTDKPKLIFYRPVDFWHKVPDEPNEYWADYFDIELLVKP-DQVEKLLPYDKA-RFAY 128
Query: 80 YIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRE 139
++ + + V+ K+ E+ + +A + + + +
Sbjct: 129 IGEYLEVAQALGFELMNPEPVMNFYHYHRAYKTQYELACMREANKIAVQGHKAARDAFFQ 188
Query: 140 LIEEF 144
EF
Sbjct: 189 GKSEF 193
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex,
amino-acid biosynthesis, cytoplasm, lysine biosynthesis;
HET: AKG; 1.80A {Thermus thermophilus HB27} PDB: 2ztk_A*
Length = 382
Score = 26.0 bits (56), Expect = 4.8
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 99 SVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFI 145
++ A E GL E+ +T+ + L +E+ ++ E+I
Sbjct: 328 AIKARAEELGLHYGEEELHRVTQHIKALADRGQLTLEELDRILREWI 374
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 0.99A {Thermus thermophilus} SCOP:
c.1.8.4 PDB: 1np2_A
Length = 431
Score = 26.3 bits (57), Expect = 4.9
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVAE 103
+Y+DF ++ + K +Y+ +A
Sbjct: 404 YYVDFPSQRRIPKRSALWYRERIAR 428
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase;
1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Length = 923
Score = 26.3 bits (57), Expect = 4.9
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 89 YFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE---FI 145
+ L ++ + S ++ T +D + E + EIR+ I I
Sbjct: 47 HHMRLINLIDDLLEVFQTDPDFHSFH-LDGQTIILDDYLKVRPEREPEIRQAIASGKLRI 105
Query: 146 ELGFDQCDE 154
+ D+
Sbjct: 106 GPFYILQDD 114
>3ele_A Amino transferase; RER070207001803, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE PLP; 2.10A {Eubacterium
rectale}
Length = 398
Score = 25.9 bits (55), Expect = 5.2
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 113 AIEIEEITKAVDTLTRAYNEYKK 135
++ E I ++ + Y +Y K
Sbjct: 376 CVDREMIKHSMPAFEKIYKKYNK 398
>2ae0_X Membrane-bound lytic murein transglycosylase A; double-PSI
beta-barrel, small mixed parallel/antiparallel six
stranded beta barrel; 2.00A {Escherichia coli} SCOP:
b.52.1.4 PDB: 2pjj_A 2pic_A 2pi8_A* 2gae_A
Length = 345
Score = 25.9 bits (57), Expect = 5.3
Identities = 7/54 (12%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 25 QIRSKESVIN-KEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSK 77
Q + + IN +F ++ + + + + + VY A + + + +
Sbjct: 26 QPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQ 79
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3ikj_A 1vdz_A
Length = 588
Score = 26.2 bits (57), Expect = 5.3
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIR 138
FY + L + K V E E G K ++ +I +D + ++
Sbjct: 530 FYDKTMEAINRGVPLEEIAKLPVRE--EIGRMKFERDVSKIRSLID-------KTNEQFE 580
Query: 139 ELIEEF 144
EL +++
Sbjct: 581 ELFKKY 586
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 25.9 bits (56), Expect = 5.7
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
K+ EIE++ KA + A E +K I
Sbjct: 17 KTPSEIEKMKKAGKAVAVALREVRKVIVPGKTA 49
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus
horikoshii OT3}
Length = 375
Score = 25.9 bits (56), Expect = 6.4
Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 62 YDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITK 121
K+ +E+ ++Y + + V +FG + EE+ +
Sbjct: 271 RQKLRKAFCPAREVRYN---PVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKR 327
Query: 122 AVDTLTRAYNEYKKEIRELIEEFIE 146
+ K + E + +E
Sbjct: 328 DFAEGKLHPLDLKNAVAEYLINLLE 352
>1e4i_A Beta-glucosidase; glycosyl hydrolase, family 1 glycosyl hydrolase,
covalent enzyme-glycoside intermediate, alpha/beta
barrel; HET: G2F NFG; 2.00A {Bacillus polymyxa} SCOP:
c.1.8.4 PDB: 1tr1_A 1bgg_A* 1bga_A 1uyq_A*
Length = 447
Score = 25.8 bits (56), Expect = 7.1
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVA 102
++DFRT+++ K +Y++VV+
Sbjct: 416 IHVDFRTQVRTPKQSYYWYRNVVS 439
>2cv8_A TRNA-splicing endonuclease; tRNA-intron endonuclease, structural
genomics, NPPSFA; 2.80A {Sulfolobus tokodaii}
Length = 180
Score = 25.3 bits (55), Expect = 9.6
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 23 FLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYID 82
+L + K +++ E LY+ + +Y Y+ + + K + D
Sbjct: 55 YLVKKGKLEIVSNGERLDFERLYQIGVTQIPRFRILYSVYEDLREKGYVVRSGIK-YGAD 113
Query: 83 FR 84
F
Sbjct: 114 FA 115
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.315 0.132 0.356
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,592,505
Number of extensions: 76332
Number of successful extensions: 721
Number of sequences better than 10.0: 1
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 113
Length of query: 190
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 103
Effective length of database: 3,584,002
Effective search space: 369152206
Effective search space used: 369152206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.1 bits)