RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781072|ref|YP_003065485.1| hypothetical protein
CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62]
(190 letters)
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 30.6 bits (68), Expect = 0.082
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVAELREFGL-----GKS----------AIEIEEITKAV 123
I+ + + K K +VA R+ GL G IE +I + +
Sbjct: 354 IAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGL 413
Query: 124 DTLTRAYNEYKK 135
+ +++ ++E K+
Sbjct: 414 EIISQCFDEAKQ 425
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 29.6 bits (65), Expect = 0.18
Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 3/106 (2%)
Query: 44 LYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKY---YKSV 100
+ K S ++ ++ KA+ E + KY Y
Sbjct: 195 VLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLT 254
Query: 101 VAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIE 146
+ +FG + EE+ + K + E + + +E
Sbjct: 255 IKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILE 300
>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga
maritima [TaxId: 2336]}
Length = 420
Score = 27.8 bits (60), Expect = 0.69
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 109 LGKSAIEIEEITKAVDTLTRAYNEYKKE 136
L E+I + + L EY KE
Sbjct: 389 LSFCLPPDEKIVEGIKRLREVVLEYGKE 416
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase,
PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
Length = 447
Score = 27.2 bits (60), Expect = 0.80
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 13 SKIPDAKFGSFLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVY 59
SK PD FL +++ +V+++ F + L + R K
Sbjct: 332 SKAPDGSVEEFLMAQNRFAVLDRSFPEDAKRLRAQVAHELDVRFKEL 378
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 27.0 bits (58), Expect = 1.1
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
KSA E I + + + + E
Sbjct: 3 KSAEEHVMIRHGARIADIGGAAVVEALGDQVPE 35
>d1rhca_ c.1.16.3 (A:) Coenzyme F420 dependent secondary alcohol
dehydrogenase {Archaeon Methanoculleus thermophilicus
[TaxId: 2200]}
Length = 330
Score = 26.6 bits (57), Expect = 1.5
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 136 EIRELIEEFIELGFDQ 151
E+ + IE F E G +
Sbjct: 289 EMIKEIERFKEAGINH 304
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 26.6 bits (59), Expect = 1.6
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 31 SVINKEFVT------KVEELYEKAQKAHKKRDK 57
+++++ VT KV+E E A++ +K+RD
Sbjct: 458 AIVDRVQVTIFTDEAKVKEYMEVAREKYKERDD 490
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 26.5 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEF 144
K+ EIE I KA + +A +EI E E
Sbjct: 1 KTKEEIEIIEKACEIADKAVMAAIEEITEGKRER 34
>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus
[TaxId: 274]}
Length = 426
Score = 26.3 bits (57), Expect = 1.7
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVA 102
+Y+DF ++ + K +Y+ +A
Sbjct: 401 YYVDFPSQRRIPKRSALWYRERIA 424
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 26.4 bits (57), Expect = 1.7
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 2/112 (1%)
Query: 37 FVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKY 96
V L + ++ K+ K KK K + ++ L + K +
Sbjct: 208 MNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFP 267
Query: 97 YKSVVAELR--EFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIE 146
KS LR ++G K+ ++ K + K + + + ++
Sbjct: 268 LKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLD 319
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 25.9 bits (55), Expect = 2.2
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
K+ E++ + + + N + + I
Sbjct: 4 KTEEELQALKEIGYICAKVRNTMQAATKPGITT 36
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 321
Score = 25.8 bits (55), Expect = 2.3
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 136 EIRELIEEFIELGFDQ 151
E IE E+G Q
Sbjct: 281 EFIPKIEALGEMGVTQ 296
>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa [TaxId:
1406]}
Length = 447
Score = 25.9 bits (56), Expect = 2.4
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVA 102
++DFRT+++ K +Y++VV+
Sbjct: 416 IHVDFRTQVRTPKQSYYWYRNVVS 439
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus
subtilis [TaxId: 1423]}
Length = 67
Score = 25.8 bits (56), Expect = 2.5
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 80 YIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKE 136
+I+ A+ YY+SVV+ L + L K+A+ + K + L AYN+ K+
Sbjct: 15 HIEMNQSEDKIHAMNSYYRSVVSTLVQDQLTKNAV----VLKRIQHLDEAYNKVKRG 67
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 25.7 bits (55), Expect = 2.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
K+ EIE++ KA + A E +K I
Sbjct: 5 KTPSEIEKMKKAGKAVAVALREVRKVIVPGKTA 37
>d1vffa1 c.1.8.4 (A:1-423) Beta-glucosidase A {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 423
Score = 24.4 bits (52), Expect = 6.0
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 7/38 (18%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVAE-------LREFGL 109
+D++T + + Y + L+ +GL
Sbjct: 381 VEVDYQTFERRPRKSAYVYGEIARSKEIKDELLKRYGL 418
>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima
[TaxId: 2336]}
Length = 443
Score = 24.4 bits (52), Expect = 6.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVA 102
Y+D+ T+ + K +Y +VV
Sbjct: 415 VYVDYSTQKRIVKDSGYWYSNVVK 438
>d1uwsa_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 489
Score = 24.5 bits (52), Expect = 6.4
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVA 102
+D+ T+ Y++ Y+ +
Sbjct: 444 LKVDYNTKRLYWRPSALVYREIAT 467
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 24.5 bits (52), Expect = 6.6
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 111 KSAIEIEEITKAVDTLTRAYNEYKKEIRELIEE 143
K+ +IE++ A + ++ +
Sbjct: 4 KTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVST 36
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain
{Thermotoga maritima [TaxId: 2336]}
Length = 281
Score = 24.3 bits (53), Expect = 6.8
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 AVDTLTRAYNEYKKEIRELIEEFIEL-GFDQCDEC 155
V L R ++EY+KE L+E+ + L +D +C
Sbjct: 205 NVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYILKC 239
>d1gnxa_ c.1.8.4 (A:) Beta-glucosidase A {Streptomyces sp. [TaxId:
1931]}
Length = 464
Score = 24.4 bits (52), Expect = 7.3
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVA 102
Y+D+ T + KA ++Y V
Sbjct: 435 VYVDYPTGTRIPKASARWYAEVAR 458
>d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL
{Lactococcus lactis [TaxId: 1358]}
Length = 468
Score = 24.0 bits (51), Expect = 8.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVA 102
FY+DF T+ +Y K +YK +
Sbjct: 440 FYVDFDTQERYPKKSAHWYKKLAE 463
>d1qoxa_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus circulans, subsp.
alkalophilus [TaxId: 1397]}
Length = 449
Score = 24.0 bits (51), Expect = 8.2
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVA 102
++D+ T ++ K +YK V++
Sbjct: 420 VHVDYDTLVRTPKDSFYWYKGVIS 443
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 23.9 bits (51), Expect = 8.2
Identities = 10/124 (8%), Positives = 33/124 (26%), Gaps = 3/124 (2%)
Query: 26 IRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDKVSSHKKSPKELSKAFYIDFRT 85
+ E ++ + +D + + + + +
Sbjct: 99 STQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEV 158
Query: 86 ELKYFKALTKYYKS---VVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIE 142
+ + K +++ L K +E + + + + + E +E
Sbjct: 159 TEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLE 218
Query: 143 EFIE 146
EF+
Sbjct: 219 EFLA 222
>d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera
aggregans [TaxId: 54254]}
Length = 481
Score = 24.0 bits (51), Expect = 9.1
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 79 FYIDFRTELKYFKALTKYYKSVVAE 103
+DF+T+ +Y + ++ +
Sbjct: 443 VMVDFKTKKRYLRPSALVFREIATH 467
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.356
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 697,808
Number of extensions: 33802
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 58
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 50 (23.2 bits)