BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781072|ref|YP_003065485.1| hypothetical protein
CLIBASIA_04870 [Candidatus Liberibacter asiaticus str. psy62]
         (190 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781072|ref|YP_003065485.1| hypothetical protein CLIBASIA_04870 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 190

 Score =  378 bits (970), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MGYSVSASNNDTSKIPDAKFGSFLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYG 60
           MGYSVSASNNDTSKIPDAKFGSFLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYG
Sbjct: 1   MGYSVSASNNDTSKIPDAKFGSFLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYG 60

Query: 61  AYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEIT 120
           AYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEIT
Sbjct: 61  AYDKVSSHKKSPKELSKAFYIDFRTELKYFKALTKYYKSVVAELREFGLGKSAIEIEEIT 120

Query: 121 KAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKADVIQKKRIAFEMVEREFA 180
           KAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKADVIQKKRIAFEMVEREFA
Sbjct: 121 KAVDTLTRAYNEYKKEIRELIEEFIELGFDQCDECDLCSEKADVIQKKRIAFEMVEREFA 180

Query: 181 EKLEGKFVRK 190
           EKLEGKFVRK
Sbjct: 181 EKLEGKFVRK 190


>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 480

 Score = 25.4 bits (54), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 5   VSASNNDTSKIPDAKFGSFLQIRSKESVINKEFVTKVEELYEKAQKAHKKRDKVYGAYDK 64
           V  S+N  S +P  K  + LQIR  +SV+   F  +++E+      +  ++D + G  + 
Sbjct: 257 VVVSSNQGSAVPKGKIKALLQIR--DSVV-PIFQNQLDEMARVLIGSFSEKDPIAGNSEN 313

Query: 65  V 65
           V
Sbjct: 314 V 314


>gi|254780203|ref|YP_003064616.1| hypothetical protein CLIBASIA_00440 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 82

 Score = 22.7 bits (47), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 110 GKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIELGFD 150
           G S  ++E +   V +  + Y  Y   + ELIE      FD
Sbjct: 27  GLSTFDVEPLKNPVKSHGKGYESYISHVCELIELLKNKDFD 67


>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1040

 Score = 22.3 bits (46), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 130 YNEYKKEIRELIEEFIELGFDQCDECDLCSEKADVIQKKRIA 171
           Y   K+ I+EL  EFIE+   +     +     DV+++K  A
Sbjct: 50  YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTA 91


>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score = 22.3 bits (46), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 77  KAFYIDFRTE----LKYFKALTKYYKSVVAELREFGLGKSAIEIEEITKAVDTLTRAYNE 132
            AFY++  +E    +   +A+    +  +  + E   G   + +  I   V T+T +  E
Sbjct: 507 NAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVE 566

Query: 133 YKKEIRELI 141
           Y +EI  L+
Sbjct: 567 YAQEIANLL 575


>gi|254780899|ref|YP_003065312.1| methionine aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 273

 Score = 22.3 bits (46), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 91  KALTKYYKS----VVAELREFGLGKSAIEIEEITKAVDTLTRAYNEYKKEIRELIEEFIE 146
           KA+ +Y  S    VV      G+GKS  E  EI    D L  +   +++ +   IE  + 
Sbjct: 158 KAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLN 217

Query: 147 LG 148
           +G
Sbjct: 218 VG 219


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.132    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,571
Number of Sequences: 1233
Number of extensions: 4222
Number of successful extensions: 30
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 18
length of query: 190
length of database: 328,796
effective HSP length: 69
effective length of query: 121
effective length of database: 243,719
effective search space: 29489999
effective search space used: 29489999
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 36 (18.5 bits)