Query gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 307 No_of_seqs 154 out of 1016 Neff 5.0 Searched_HMMs 33803 Date Wed Jun 1 21:13:02 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781073.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2aex_A Coproporphyrinogen III 100.0 0 0 919.9 20.8 271 12-306 35-319 (346) 2 >1vju_A Coproporphyrinogen III 100.0 0 0 687.5 20.3 224 8-255 3-232 (232) 3 >1txn_A Coproporphyrinogen III 100.0 0 0 681.0 16.9 225 7-255 2-249 (249) 4 >1ci4_A Protein (barrier-TO-au 52.6 13 0.00038 17.7 3.0 32 167-198 54-88 (89) 5 >2hjh_A NAD-dependent histone 51.1 5.3 0.00016 20.2 0.8 84 74-157 130-227 (270) 6 >1j8f_A SIRT2, sirtuin 2, isof 46.0 3.8 0.00011 21.1 -0.6 56 82-137 117-174 (251) 7 >3en9_A Glycoprotease, O-sialo 34.5 26 0.00076 15.7 2.2 13 262-274 107-119 (119) 8 >1zru_A Lactophage P2 receptor 30.8 36 0.0011 14.8 2.7 36 52-87 35-70 (150) 9 >2r39_A FIXG-related protein; 26.6 16 0.00046 17.1 -0.0 10 277-286 15-24 (118) 10 >3cvz_A S-layer protein; surfa 24.6 14 0.0004 17.5 -0.6 24 267-290 75-98 (130) 11 >2icy_A Probable UTP-glucose-1 24.3 26 0.00078 15.7 0.8 14 142-155 37-50 (82) 12 >2i5k_A UTP--glucose-1-phospha 23.7 29 0.00086 15.4 0.9 10 143-152 38-47 (85) 13 >2e7j_A SEP-tRNA:Cys-tRNA synt 23.7 45 0.0013 14.2 1.9 63 185-252 57-119 (120) 14 >2ohc_A TRNA-splicing endonucl 22.3 27 0.00081 15.5 0.6 22 130-151 5-28 (47) 15 >1x0u_A Hypothetical methylmal 22.1 39 0.0012 14.6 1.3 27 80-106 52-78 (251) 16 >2o4j_A Vitamin D3 receptor; n 20.9 54 0.0016 13.6 2.3 44 136-179 2-50 (51) No 1 >>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens} (A:) Probab=100.00 E-value=0 Score=919.90 Aligned_cols=271 Identities=41% Similarity=0.768 Sum_probs=259.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEE Q ss_conf 76699999999999999999999999963010222234456651252123178888877750489950594653688777 Q gi|254781073|r 12 DDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEKAAVLV 91 (307) Q Consensus 12 ~~ie~kk~~~~~wF~~LQd~Ic~~fE~lE~~~~~~~~~~~~~~F~~d~W~R~~g~~~~~GGG~s~VL~~G~VFEKaGVNf 91 (307) .+.+.++..+++||+.||++||++||+||++ ++|++|.|+|++| |||+||||++|+||||||||| T Consensus 35 ~~~~~~r~~~~~~~~~lQ~~Ic~~lE~idg~----------a~F~~d~W~R~~G-----GGG~s~Vl~~G~VFEKaGVN~ 99 (346) T 2aex_A 35 RRPGDMKTKMELLILETQAQVCQALAQVDGG----------ANFSVDRWERKEG-----GGGISCVLQDGCVFEKAGVSI 99 (346) T ss_dssp HCTTSHHHHHHHHHHHHHHHHHHHHHHHCTT----------CCCEEEEEEETTT-----EEEEEEEEESCSSEEEEEEEE T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCEEECCCCCCCC-----CCCEEEEEECCCEEEEEEEEE T ss_conf 2838899999999999999999999987389----------9736446606899-----884289983892888621799 Q ss_pred EEEECCCHHHHHHHHHHC-------CCCCCCEEECEEEEEECCCCCCCHHHCCHHHEEEC------CCCCCCCCCCCCCC Q ss_conf 630035426776421110-------26765100000223313688744010230210202------43125320011000 Q gi|254781073|r 92 STVYGDLSPDFKDQILGT-------TKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTG------AYWFGGGIDLTPSL 158 (307) Q Consensus 92 S~V~G~~~p~~a~~i~g~-------~~~~~F~AtGiS~V~Hp~nP~vPt~H~N~R~f~~~------~~WFGGG~DLTP~~ 158 (307) |+|+|+++|++++++++. ..+.+|||||||+|+||+||+|||+|||+|||++. .||||||+||||| T Consensus 100 S~V~G~~~p~~a~~~~~~~~~~~~~~~~~~f~A~GiSlV~HP~NP~vPt~H~N~R~f~~~~~~~~~~~WFGGG~DLTP~- 178 (346) T 2aex_A 100 SVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVEEADGNKQWWFGGGCDLTPT- 178 (346) T ss_dssp EEEEEECCHHHHHHHHHTTCCCCCBTTBCEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECSTTCEEEEEEEEEEEECS- T ss_pred EEEEEECCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEECCCCC- T ss_conf 9997417999997401133566542358853877545643116875530331035899856998722699764013333- Q ss_pred CHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 00110432679999999984036567334289999767874345325212343010101478666589677999999999 Q gi|254781073|r 159 ESRRHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVG 238 (307) Q Consensus 159 ~~~~y~~~eD~~~fH~~~k~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFFD~l~~~~~~~~~e~~f~f~~~vg 238 (307) |+++||++|||+++|++||+|+++||++||+|||+|||||||+|+||||||||||||+ +++|++|+|+++|| T Consensus 179 ----y~~~eD~~~FH~~~K~aCd~~~~~~Y~~fK~wCD~YF~i~HR~E~RGiGGIFfDdl~~----~~~e~~f~F~~~~g 250 (346) T 2aex_A 179 ----YLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDS----PSKEEVFRFVQSCA 250 (346) T ss_dssp ----SCCHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTEEGGGTEESSSEEEEEEEECC----SCHHHHHHHHHHHH T ss_pred ----CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC----CCCCCHHHHHHHHH T ss_conf ----4768899999999999986418576799987653654234441245421367721378----86320079999999 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC-CCCHHHEEECCCCCCCC Q ss_conf 999999999998754799998999885420240112211110255357357-88811141128887889 Q gi|254781073|r 239 DCFIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKT-GGNVESILASMPPLVAW 306 (307) Q Consensus 239 ~~fl~~y~~Iv~~r~~~~~~~~~k~~Ql~rRgRYvEFNL~yDRGT~FGL~t-~gr~esIl~SlPp~~~W 306 (307) ++||++|+|||+||++++||++||+|||+||||||||||||||||+|||+| |||||||||||||+|+| T Consensus 251 ~~fl~~Y~pIv~rr~~~~~te~er~~Ql~rRGRYvEFNLvyDRGT~FGL~t~G~r~esILmSLPp~a~W 319 (346) T 2aex_A 251 RAVVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARW 319 (346) T ss_dssp HTHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCCCCTTGGGSSSCCHHHHHHHCCSCCCC T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCC T ss_conf 999999999999860799988999989760887689998876685102637998810478648987801 No 2 >>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} (A:1-232) Probab=100.00 E-value=0 Score=687.51 Aligned_cols=224 Identities=34% Similarity=0.666 Sum_probs=215.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEEE Q ss_conf 89687669999999999999999999999996301022223445665125212317888887775048995059465368 Q gi|254781073|r 8 IGCPDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEKA 87 (307) Q Consensus 8 ~~~p~~ie~kk~~~~~wF~~LQd~Ic~~fE~lE~~~~~~~~~~~~~~F~~d~W~R~~g~~~~~GGG~s~VL~~G~VFEKa 87 (307) -.++.+.+.++..+++||+.||++||++||+||++ ++|++|.|+|++| |||++|||++|+||||| T Consensus 3 ~~~~~~~~~~r~~~~~~~~~lQ~~I~~~le~~dg~----------a~F~~d~W~R~~G-----gGG~t~vl~~G~VFEKa 67 (232) T 1vju_A 3 HHHHHHXSLAVEAVKDFLLKLQDDICEALEAEDGQ----------ATFVEDKWTREGG-----GGGRTRVXVDGAVIEKG 67 (232) T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CCCEEEEEEETTT-----EEEEEEEEESCSSEEEE T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC----------CCEEECCCCCCCC-----CCCCEEEEECCEEEEEC T ss_conf 53200153679999999999999999999964078----------8754545547875-----55414898668357743 Q ss_pred EEEEEEEECCCHHHHHHHHHHCCCCCCCEEECEEEEEECCCCCCCHHHCCHHHEEECC------CCCCCCCCCCCCCCHH Q ss_conf 8777630035426776421110267651000002233136887440102302102024------3125320011000001 Q gi|254781073|r 88 AVLVSTVYGDLSPDFKDQILGTTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTGA------YWFGGGIDLTPSLESR 161 (307) Q Consensus 88 GVNfS~V~G~~~p~~a~~i~g~~~~~~F~AtGiS~V~Hp~nP~vPt~H~N~R~f~~~~------~WFGGG~DLTP~~~~~ 161 (307) |||||+|+|+++|++++++++..++.+|+|||||||+||+||+|||+|||+|||++.+ ||||||+||||| T Consensus 68 gVN~S~V~G~~~p~~a~~~~~~~~~~~f~A~GiSlViHP~NP~vPTvH~N~R~f~~~~~~~~~~~WFGGG~DLTP~---- 143 (232) T 1vju_A 68 GVNFSHVYGKGLPXSSTERHPDIAGCNFEAXGVSLVIHPKNPHVPTSHANVRLFVAEREGKEPVWWFGGGFDLTPY---- 143 (232) T ss_dssp EEEEEEEEEEC-----------CTTCEEEEEEEEEEEEESSTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECS---- T ss_pred CEEEEEEEECCCCHHHHHHCCCCCCCCCEEECCHHHHCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCHH---- T ss_conf 3417999904641023430444478751441211010135887762234469999825998614899764252166---- Q ss_pred HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 10432679999999984036567334289999767874345325212343010101478666589677999999999999 Q gi|254781073|r 162 RHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCF 241 (307) Q Consensus 162 ~y~~~eD~~~fH~~~k~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFFD~l~~~~~~~~~e~~f~f~~~vg~~f 241 (307) |+++||++|||+++|++||+|++++|++||+|||+|||||||+|+||||||||||||+ +++|++|+|+++||++| T Consensus 144 -y~~~eD~~hFH~~~K~aCd~~~~~~Y~~fK~wCD~YFyi~HR~E~RGIGGIFfDdl~~----~~~e~~f~f~~~vg~af 218 (232) T 1vju_A 144 -YAVEEDCRDFHQVAQDLCKPFGADVYARFKGWCDEYFFIPYRNEARGIGGLFFDDLNE----WPFEKCFEFVQAVGKGY 218 (232) T ss_dssp -SCCHHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHSEEGGGTEESSSEEEEEEEECS----SCHHHHHHHHHHHHHHH T ss_pred -HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCHHHCCCCCCHHHHHHHCC----CCCCHHHHHHHHHHHHH T ss_conf -7779999999999998735110112167787633524240330245532100113306----76420089999999999 Q ss_pred HHHHHHHHHHHCCC Q ss_conf 99999999875479 Q gi|254781073|r 242 IKLYPSLVRRNYHH 255 (307) Q Consensus 242 l~~y~~Iv~~r~~~ 255 (307) |++|+|||+||+++ T Consensus 219 l~aY~pIv~kr~~t 232 (232) T 1vju_A 219 XDAYIPIVNRRKNT 232 (232) T ss_dssp HHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHCC T ss_conf 99889999986379 No 3 >>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structure initiative; 1.70A {Saccharomyces cerevisiae} (A:1-249) Probab=100.00 E-value=0 Score=681.02 Aligned_cols=225 Identities=35% Similarity=0.643 Sum_probs=209.6 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEE Q ss_conf 88968766999999999999999999999999630102222344566512521231788888777504899505946536 Q gi|254781073|r 7 EIGCPDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEK 86 (307) Q Consensus 7 ~~~~p~~ie~kk~~~~~wF~~LQd~Ic~~fE~lE~~~~~~~~~~~~~~F~~d~W~R~~g~~~~~GGG~s~VL~~G~VFEK 86 (307) |.+.++..+.++..+++||+.||++||++||++|+. +|.+|.|+|+.+ +|||+||||++|+|||| T Consensus 2 P~~~~~~~~~~~~~~~~~~~~lQ~~Ic~~le~~dg~-----------~F~~d~W~r~~~----gGGG~s~Vl~~G~VfEK 66 (249) T 1txn_A 2 PAPQDPRNLPIRQQXEALIRRKQAEITQGLESIDTV-----------KFHADTWTRGND----GGGGTSXVIQDGTTFEK 66 (249) T ss_dssp CCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHTTSSS-----------CCEECCCCCSCC----CSSSCEEEEESCSSEEE T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CEEEEEEECCCC----CCCCEEEEECCCCHHHC T ss_conf 899897643099999999999999999999965078-----------706540054799----99966999758841011 Q ss_pred EEEEEEEEECCCHHHHHHHHHHCC----------------CCCCCEEECEEEEEECCCCCCCHHHCCHHHEEEC------ Q ss_conf 887776300354267764211102----------------6765100000223313688744010230210202------ Q gi|254781073|r 87 AAVLVSTVYGDLSPDFKDQILGTT----------------KNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTG------ 144 (307) Q Consensus 87 aGVNfS~V~G~~~p~~a~~i~g~~----------------~~~~F~AtGiS~V~Hp~nP~vPt~H~N~R~f~~~------ 144 (307) ||||||+|+|+++|++++++++.. ++.+|||||||||+||+||+|||+|||+|||+++ T Consensus 67 aGVN~S~V~G~~~p~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~f~A~GiSlViHP~NP~vPtvH~N~R~fe~~~~~g~~ 146 (249) T 1txn_A 67 GGVNVSVVYGQLSPAAVSAXKADHKNLRLPEDPKTGLPVTDGVKFFACGLSXVIHPVNPHAPTTHLNYRYFETWNQDGTP 146 (249) T ss_dssp EEEEEEEEEEEECHHHHHTTGGGCTTCCCC----------CCEEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECTTSSE T ss_pred CCEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEHCCCCCCCCCCCCCCEEEEEECCCCCC T ss_conf 75579999831798999851311245667542223675335774167400200002578741001143279975488875 Q ss_pred -CCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCC Q ss_conf -4312532001100000110432679999999984036567334289999767874345325212343010101478666 Q gi|254781073|r 145 -AYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPE 223 (307) Q Consensus 145 -~~WFGGG~DLTP~~~~~~y~~~eD~~~fH~~~k~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFFD~l~~~~~ 223 (307) .||||||+||||+ |+++||++|||++||++||+|++++|++||+|||+|||||||+|+|||||||||||++ T Consensus 147 ~~wWFGGG~DLTP~-----y~~~eD~~~FH~~lK~aCd~h~~~~Yp~fK~wCD~YFyi~HR~E~RGVGGIFfDdl~~--- 218 (249) T 1txn_A 147 QTWWFGGGADLTPS-----YLYEEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDE--- 218 (249) T ss_dssp EEEEEEEEEEEECS-----SCCHHHHHHHHHHHHHHHHTTCTTHHHHHEECGGGGGGGGTCCCCCCCEEEEEEEECS--- T ss_pred CEEEEEEEECCCCC-----CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCC--- T ss_conf 40488400114300-----2206889999999877642578688899998765640230330145300112455414--- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 58967799999999999999999999875479 Q gi|254781073|r 224 MGGIDADFSFISAVGDCFIKLYPSLVRRNYHH 255 (307) Q Consensus 224 ~~~~e~~f~f~~~vg~~fl~~y~~Iv~~r~~~ 255 (307) +++|++|+|+++||++||++|+|||+||+|. T Consensus 219 -~~~e~~f~F~~~vg~~fl~aY~pIv~krkd~ 249 (249) T 1txn_A 219 -RDPQEILKXVEDCFDAFLPSYLTIVKRRKDX 249 (249) T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHTTTTS T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf -6427788999998877899999999974256 No 4 >>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} (A:) Probab=52.58 E-value=13 Score=17.66 Aligned_cols=32 Identities=31% Similarity=0.727 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHH Q ss_conf 679999999984036567---33428999976787 Q gi|254781073|r 167 PDVIFFHNTLKEMCSQHA---VANYTHYKEWCDRY 198 (307) Q Consensus 167 eD~~~fH~~~k~~Cd~~~---~~~Y~~fKk~CD~Y 198 (307) .|-..|-.-+|+.|.... .+-|.-.|.|||++ T Consensus 54 kde~~F~~Wlk~~~GAn~kQa~dcy~cLkeWcd~f 88 (89) T 1ci4_A 54 KDEDLFREWLKDTCGANAKQSRDCFGCLREWCDAF 88 (89) T ss_dssp TCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 74999999999980889899999999999999972 No 5 >>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} (A:1-155,A:240-354) Probab=51.11 E-value=5.3 Score=20.17 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=58.5 Q ss_pred EEEEEE-C-CCEEEEEEE-EEEEEECCCHHHHHHHHHHCCC-CCCCEEECEEEEEECCCCCCCHHHCCHHHEEEC----- Q ss_conf 489950-5-946536887-7763003542677642111026-765100000223313688744010230210202----- Q gi|254781073|r 74 RMATLC-A-GKVFEKAAV-LVSTVYGDLSPDFKDQILGTTK-NPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTG----- 144 (307) Q Consensus 74 ~s~VL~-~-G~VFEKaGV-NfS~V~G~~~p~~a~~i~g~~~-~~~F~AtGiS~V~Hp~nP~vPt~H~N~R~f~~~----- 144 (307) ..+|+. | -..|+|||. ++..+||++++.+...+..... ---....|.|+.++|..=+|..+.-+...+.+. T Consensus 130 ~~~iiTqNiD~L~~kAG~~~vielHG~lp~~~~~~~~~~~~~~Dlllv~GTSL~V~p~~~lv~~~~~~~~~~~iN~~~t~ 209 (270) T 2hjh_A 130 LLRNYTQNIDNLESYAGISTDKLVQCALPNKFHKSIREDILECDLLICIGTSLKVAPVSEIVNXVPSHVPQVLINRDPVK 209 (270) T ss_dssp EEEEEECCCSCHHHHTTCCTTTEEETBCCHHHHHHHHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCT T ss_pred CCEEEECCCHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCEECCHHHHHHHHHCCCCEEEECCCCCC T ss_conf 23687316337788759975660220687899999999996499999989897347988999999838989998399889 Q ss_pred ----CCCCCCCCCCC-CC Q ss_conf ----43125320011-00 Q gi|254781073|r 145 ----AYWFGGGIDLT-PS 157 (307) Q Consensus 145 ----~~WFGGG~DLT-P~ 157 (307) ++++-|.||-. |. T Consensus 210 ~d~~d~~i~g~~d~~l~~ 227 (270) T 2hjh_A 210 HAEFDLSLLGYCDDIAAX 227 (270) T ss_dssp TSCCSEEEESCHHHHHHH T ss_pred CCCCCEEEECCHHHHHHH T ss_conf 998438995859999999 No 6 >>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing; gene regulation, transferase; 1.70A {Homo sapiens} (A:22-153,A:205-323) Probab=46.03 E-value=3.8 Score=21.12 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=40.9 Q ss_pred CEEEEEEE-EEEEEECCCHHHHHHHHHHCCCCCC-CEEECEEEEEECCCCCCCHHHCC Q ss_conf 46536887-7763003542677642111026765-10000022331368874401023 Q gi|254781073|r 82 KVFEKAAV-LVSTVYGDLSPDFKDQILGTTKNPY-FWATGLSVIVHPYNPHVPAVHFN 137 (307) Q Consensus 82 ~VFEKaGV-NfS~V~G~~~p~~a~~i~g~~~~~~-F~AtGiS~V~Hp~nP~vPt~H~N 137 (307) ..|||||. ++..+||.++..+-..+....+.+- +--+|.|+.+||..=++=.+--+ T Consensus 117 ~L~~rAg~~~vielHG~Lp~~~~~~~~~d~~~~DlliViGTSl~V~P~a~lv~~~~~~ 174 (251) T 1j8f_A 117 TLERIAGLEQEDLVEASLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLS 174 (251) T ss_dssp CHHHHTTCCGGGEEETCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTT T ss_pred HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCEECCHHHHHHHHHCC T ss_conf 3766059856666553799999999999996699999989988767887899999838 No 7 >>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* (A:422-540) Probab=34.52 E-value=26 Score=15.73 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=9.3 Q ss_pred HHHHHCCCCCHHH Q ss_conf 9885420240112 Q gi|254781073|r 262 RQEQLIRRGRYAE 274 (307) Q Consensus 262 k~~Ql~rRgRYvE 274 (307) +--+..+|||||| T Consensus 107 ~l~~i~~r~ry~~ 119 (119) T 3en9_A 107 LMKDVERRARYVE 119 (119) T ss_dssp HHHHHHTCSCCC- T ss_pred HHHHHHHCCCCCC T ss_conf 9999985057789 No 8 >>1zru_A Lactophage P2 receptor binding protein; domains: beta barrel, beta prism, beta barrel, structural genomics; 1.73A {Lactococcus lactis phage P2} (A:1-150) Probab=30.85 E-value=36 Score=14.82 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=25.3 Q ss_pred CCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEEE Q ss_conf 665125212317888887775048995059465368 Q gi|254781073|r 52 PKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEKA 87 (307) Q Consensus 52 ~~~F~~d~W~R~~g~~~~~GGG~s~VL~~G~VFEKa 87 (307) -+.|+++.|..+-...-+.----+++|..|+.||-- T Consensus 35 Y~tirrkdW~~P~NtaLNvqY~nTSiiagGRYFEL~ 70 (150) T 1zru_A 35 YRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELL 70 (150) T ss_dssp TTCCEEEEEECCEECSSEEEEEEEEEEETTEEEEEE T ss_pred CCEEEECCCCCCCCCCEEEEEECCEEEECCEEEEEE T ss_conf 341870214774541035786044598744530222 No 9 >>2r39_A FIXG-related protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.02A {Vibrio parahaemolyticus rimd 2210633} (A:) Probab=26.58 E-value=16 Score=17.14 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=3.1 Q ss_pred HHHCCCCCCC Q ss_conf 1110255357 Q gi|254781073|r 277 LLYDKGTNFG 286 (307) Q Consensus 277 L~yDRGT~FG 286 (307) .+-|||.+|= T Consensus 15 V~rdR~~ly~ 24 (118) T 2r39_A 15 VIRDRNQLFR 24 (118) T ss_dssp EEECSSCCCC T ss_pred EEECCCCCEE T ss_conf 9945877549 No 10 >>3cvz_A S-layer protein; surface layer protein, protein binding, structural protein; 2.40A {Clostridium difficile} (A:1-93,A:237-273) Probab=24.57 E-value=14 Score=17.52 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=15.1 Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCC Q ss_conf 202401122111102553573578 Q gi|254781073|r 267 IRRGRYAEFNLLYDKGTNFGFKTG 290 (307) Q Consensus 267 ~rRgRYvEFNL~yDRGT~FGL~t~ 290 (307) +--|.||+||..|+-+..+=-+|| T Consensus 75 LGDGdyVdF~ItY~~~~~~~~~~~ 98 (130) T 3cvz_A 75 LGDGDYVDFSVDYNLENKILAKSG 98 (130) T ss_dssp CCTTCEEEEEEEEEGGGCCSCSEE T ss_pred CCCCCEEEEEEEECCCCCECCCCC T ss_conf 789985999998667552478887 No 11 >>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} (A:388-469) Probab=24.33 E-value=26 Score=15.67 Aligned_cols=14 Identities=50% Similarity=1.044 Sum_probs=8.4 Q ss_pred EECCCCCCCCCCCC Q ss_conf 20243125320011 Q gi|254781073|r 142 VTGAYWFGGGIDLT 155 (307) Q Consensus 142 ~~~~~WFGGG~DLT 155 (307) ..++||||-+.=|. T Consensus 37 V~GdV~FG~~V~l~ 50 (82) T 2icy_A 37 VSGDVWFGSSIVLK 50 (82) T ss_dssp EESEEEECSSCEEE T ss_pred EECCEEECCCEEEE T ss_conf 95888984993995 No 12 >>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} (A:404-488) Probab=23.68 E-value=29 Score=15.39 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=4.4 Q ss_pred ECCCCCCCCC Q ss_conf 0243125320 Q gi|254781073|r 143 TGAYWFGGGI 152 (307) Q Consensus 143 ~~~~WFGGG~ 152 (307) .++||||-+. T Consensus 38 ~GdV~FG~~V 47 (85) T 2i5k_A 38 TGNVFLGKDV 47 (85) T ss_dssp ESSEEECTTC T ss_pred ECCEEECCCC T ss_conf 7047985992 No 13 >>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics, NPPSFA; HET: PLP; 2.40A {Archaeoglobus fulgidus} (A:1-18,A:270-371) Probab=23.66 E-value=45 Score=14.19 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=33.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 33428999976787434532521234301010147866658967799999999999999999999875 Q gi|254781073|r 185 VANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIKLYPSLVRRN 252 (307) Q Consensus 185 ~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFFD~l~~~~~~~~~e~~f~f~~~vg~~fl~~y~~Iv~~r 252 (307) +.+|.--++---.=|||-|-=-.|||+||+=-- ....+. ..+-+..+-.....+++..|+++. T Consensus 57 ~~~~eIAk~hKrrGfFly~ELkkRgI~Gi~pG~-Tk~~Kl----stYGl~~eqv~yv~daF~EIaeky 119 (120) T 2e7j_A 57 EVLYEISKKAKGGRFFLYRELKSRKIHGIKPGL-TRYFKL----STYGLSDEEVDYVLNAFKEIIEKY 119 (120) T ss_dssp HHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTC-CSEEEE----ECTTCCHHHHHHHHHHHHHHHHHC T ss_pred CCHHHHHHHHHCCCCHHHHHHHHCCCEEECCCC-CCEEEE----ECCCCCHHHHHHHHHHHHHHHHHH T ss_conf 304678787531650678887665862464677-525888----357899999999999999999985 No 14 >>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum dsm 1728} PDB: 2ohe_A (A:151-197) Probab=22.33 E-value=27 Score=15.55 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=17.9 Q ss_pred CCCHHHCCHHHEEECC--CCCCCC Q ss_conf 7440102302102024--312532 Q gi|254781073|r 130 HVPAVHFNIRMIVTGA--YWFGGG 151 (307) Q Consensus 130 ~vPt~H~N~R~f~~~~--~WFGGG 151 (307) -+|.+.|--|-|-.++ ||.|-. T Consensus 5 sapvvrmggrsfgagdlewwigta 28 (47) T 2ohc_A 5 SAPVVRMGGRSFGAGDLEWWIGTA 28 (47) T ss_dssp CCCCEEETTEEEEETTSCTTSSEE T ss_pred CCCCCCCCCCEEECCCCHHHHCCC T ss_conf 454432265301136403330544 No 15 >>1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} (A:272-522) Probab=22.09 E-value=39 Score=14.56 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=20.5 Q ss_pred CCCEEEEEEEEEEEEECCCHHHHHHHH Q ss_conf 594653688777630035426776421 Q gi|254781073|r 80 AGKVFEKAAVLVSTVYGDLSPDFKDQI 106 (307) Q Consensus 80 ~G~VFEKaGVNfS~V~G~~~p~~a~~i 106 (307) +|...==++.|++..-|.+.|..+.++ T Consensus 52 ~G~~V~via~~~~~~gG~~~~~~~~K~ 78 (251) T 1x0u_A 52 AGNVVGIVANNPEEFGGSIDIDAADKA 78 (251) T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHH T ss_pred CCCEEEEEEEECCCCCCCCCCHHHHHH T ss_conf 680468985001136886573158999 No 16 >>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} (A:108-158) Probab=20.88 E-value=54 Score=13.65 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=30.3 Q ss_pred CCHHHEEECCCCCCCCCCCCCCCCHHH-----CCCHHHHHHHHHHHHHH Q ss_conf 230210202431253200110000011-----04326799999999840 Q gi|254781073|r 136 FNIRMIVTGAYWFGGGIDLTPSLESRR-----HSYDPDVIFFHNTLKEM 179 (307) Q Consensus 136 ~N~R~f~~~~~WFGGG~DLTP~~~~~~-----y~~~eD~~~fH~~~k~~ 179 (307) +|+-|-.....|.=|+.||+=++.|-. ..+-|-...||.+||+. T Consensus 2 ~N~~F~~~t~sw~CG~~~l~Y~~~D~~~aGfq~~lLEpL~kFh~~LkkL 50 (51) T 2o4j_A 2 SNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKL 50 (51) T ss_dssp GGGTEETTTTEEECSSGGGEECHHHHHTTTCCHHHHHHHHHHHHHHHHT T ss_pred HHHHHCCCCCCEEECCCCEEECHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 9998317887244078644540887741554599999999999999982 Done!