Query         gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 307
No_of_seqs    154 out of 1016
Neff          5.0 
Searched_HMMs 33803
Date          Wed Jun  1 21:13:02 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781073.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2aex_A Coproporphyrinogen III 100.0       0       0  919.9  20.8  271   12-306    35-319 (346)
  2 >1vju_A Coproporphyrinogen III 100.0       0       0  687.5  20.3  224    8-255     3-232 (232)
  3 >1txn_A Coproporphyrinogen III 100.0       0       0  681.0  16.9  225    7-255     2-249 (249)
  4 >1ci4_A Protein (barrier-TO-au  52.6      13 0.00038   17.7   3.0   32  167-198    54-88  (89)
  5 >2hjh_A NAD-dependent histone   51.1     5.3 0.00016   20.2   0.8   84   74-157   130-227 (270)
  6 >1j8f_A SIRT2, sirtuin 2, isof  46.0     3.8 0.00011   21.1  -0.6   56   82-137   117-174 (251)
  7 >3en9_A Glycoprotease, O-sialo  34.5      26 0.00076   15.7   2.2   13  262-274   107-119 (119)
  8 >1zru_A Lactophage P2 receptor  30.8      36  0.0011   14.8   2.7   36   52-87     35-70  (150)
  9 >2r39_A FIXG-related protein;   26.6      16 0.00046   17.1  -0.0   10  277-286    15-24  (118)
 10 >3cvz_A S-layer protein; surfa  24.6      14  0.0004   17.5  -0.6   24  267-290    75-98  (130)
 11 >2icy_A Probable UTP-glucose-1  24.3      26 0.00078   15.7   0.8   14  142-155    37-50  (82)
 12 >2i5k_A UTP--glucose-1-phospha  23.7      29 0.00086   15.4   0.9   10  143-152    38-47  (85)
 13 >2e7j_A SEP-tRNA:Cys-tRNA synt  23.7      45  0.0013   14.2   1.9   63  185-252    57-119 (120)
 14 >2ohc_A TRNA-splicing endonucl  22.3      27 0.00081   15.5   0.6   22  130-151     5-28  (47)
 15 >1x0u_A Hypothetical methylmal  22.1      39  0.0012   14.6   1.3   27   80-106    52-78  (251)
 16 >2o4j_A Vitamin D3 receptor; n  20.9      54  0.0016   13.6   2.3   44  136-179     2-50  (51)

No 1  
>>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens} (A:)
Probab=100.00  E-value=0  Score=919.90  Aligned_cols=271  Identities=41%  Similarity=0.768  Sum_probs=259.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEE
Q ss_conf             76699999999999999999999999963010222234456651252123178888877750489950594653688777
Q gi|254781073|r   12 DDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEKAAVLV   91 (307)
Q Consensus        12 ~~ie~kk~~~~~wF~~LQd~Ic~~fE~lE~~~~~~~~~~~~~~F~~d~W~R~~g~~~~~GGG~s~VL~~G~VFEKaGVNf   91 (307)
                      .+.+.++..+++||+.||++||++||+||++          ++|++|.|+|++|     |||+||||++|+|||||||||
T Consensus        35 ~~~~~~r~~~~~~~~~lQ~~Ic~~lE~idg~----------a~F~~d~W~R~~G-----GGG~s~Vl~~G~VFEKaGVN~   99 (346)
T 2aex_A           35 RRPGDMKTKMELLILETQAQVCQALAQVDGG----------ANFSVDRWERKEG-----GGGISCVLQDGCVFEKAGVSI   99 (346)
T ss_dssp             HCTTSHHHHHHHHHHHHHHHHHHHHHHHCTT----------CCCEEEEEEETTT-----EEEEEEEEESCSSEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCEEECCCCCCCC-----CCCEEEEEECCCEEEEEEEEE
T ss_conf             2838899999999999999999999987389----------9736446606899-----884289983892888621799


Q ss_pred             EEEECCCHHHHHHHHHHC-------CCCCCCEEECEEEEEECCCCCCCHHHCCHHHEEEC------CCCCCCCCCCCCCC
Q ss_conf             630035426776421110-------26765100000223313688744010230210202------43125320011000
Q gi|254781073|r   92 STVYGDLSPDFKDQILGT-------TKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTG------AYWFGGGIDLTPSL  158 (307)
Q Consensus        92 S~V~G~~~p~~a~~i~g~-------~~~~~F~AtGiS~V~Hp~nP~vPt~H~N~R~f~~~------~~WFGGG~DLTP~~  158 (307)
                      |+|+|+++|++++++++.       ..+.+|||||||+|+||+||+|||+|||+|||++.      .||||||+||||| 
T Consensus       100 S~V~G~~~p~~a~~~~~~~~~~~~~~~~~~f~A~GiSlV~HP~NP~vPt~H~N~R~f~~~~~~~~~~~WFGGG~DLTP~-  178 (346)
T 2aex_A          100 SVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVEEADGNKQWWFGGGCDLTPT-  178 (346)
T ss_dssp             EEEEEECCHHHHHHHHHTTCCCCCBTTBCEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECSTTCEEEEEEEEEEEECS-
T ss_pred             EEEEEECCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEECCCCC-
T ss_conf             9997417999997401133566542358853877545643116875530331035899856998722699764013333-


Q ss_pred             CHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             00110432679999999984036567334289999767874345325212343010101478666589677999999999
Q gi|254781073|r  159 ESRRHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVG  238 (307)
Q Consensus       159 ~~~~y~~~eD~~~fH~~~k~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFFD~l~~~~~~~~~e~~f~f~~~vg  238 (307)
                          |+++||++|||+++|++||+|+++||++||+|||+|||||||+|+||||||||||||+    +++|++|+|+++||
T Consensus       179 ----y~~~eD~~~FH~~~K~aCd~~~~~~Y~~fK~wCD~YF~i~HR~E~RGiGGIFfDdl~~----~~~e~~f~F~~~~g  250 (346)
T 2aex_A          179 ----YLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDS----PSKEEVFRFVQSCA  250 (346)
T ss_dssp             ----SCCHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTEEGGGTEESSSEEEEEEEECC----SCHHHHHHHHHHHH
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC----CCCCCHHHHHHHHH
T ss_conf             ----4768899999999999986418576799987653654234441245421367721378----86320079999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC-CCCHHHEEECCCCCCCC
Q ss_conf             999999999998754799998999885420240112211110255357357-88811141128887889
Q gi|254781073|r  239 DCFIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKT-GGNVESILASMPPLVAW  306 (307)
Q Consensus       239 ~~fl~~y~~Iv~~r~~~~~~~~~k~~Ql~rRgRYvEFNL~yDRGT~FGL~t-~gr~esIl~SlPp~~~W  306 (307)
                      ++||++|+|||+||++++||++||+|||+||||||||||||||||+|||+| |||||||||||||+|+|
T Consensus       251 ~~fl~~Y~pIv~rr~~~~~te~er~~Ql~rRGRYvEFNLvyDRGT~FGL~t~G~r~esILmSLPp~a~W  319 (346)
T 2aex_A          251 RAVVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARW  319 (346)
T ss_dssp             HTHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCCCCTTGGGSSSCCHHHHHHHCCSCCCC
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf             999999999999860799988999989760887689998876685102637998810478648987801


No 2  
>>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} (A:1-232)
Probab=100.00  E-value=0  Score=687.51  Aligned_cols=224  Identities=34%  Similarity=0.666  Sum_probs=215.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEEE
Q ss_conf             89687669999999999999999999999996301022223445665125212317888887775048995059465368
Q gi|254781073|r    8 IGCPDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEKA   87 (307)
Q Consensus         8 ~~~p~~ie~kk~~~~~wF~~LQd~Ic~~fE~lE~~~~~~~~~~~~~~F~~d~W~R~~g~~~~~GGG~s~VL~~G~VFEKa   87 (307)
                      -.++.+.+.++..+++||+.||++||++||+||++          ++|++|.|+|++|     |||++|||++|+|||||
T Consensus         3 ~~~~~~~~~~r~~~~~~~~~lQ~~I~~~le~~dg~----------a~F~~d~W~R~~G-----gGG~t~vl~~G~VFEKa   67 (232)
T 1vju_A            3 HHHHHHXSLAVEAVKDFLLKLQDDICEALEAEDGQ----------ATFVEDKWTREGG-----GGGRTRVXVDGAVIEKG   67 (232)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CCCEEEEEEETTT-----EEEEEEEEESCSSEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC----------CCEEECCCCCCCC-----CCCCEEEEECCEEEEEC
T ss_conf             53200153679999999999999999999964078----------8754545547875-----55414898668357743


Q ss_pred             EEEEEEEECCCHHHHHHHHHHCCCCCCCEEECEEEEEECCCCCCCHHHCCHHHEEECC------CCCCCCCCCCCCCCHH
Q ss_conf             8777630035426776421110267651000002233136887440102302102024------3125320011000001
Q gi|254781073|r   88 AVLVSTVYGDLSPDFKDQILGTTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTGA------YWFGGGIDLTPSLESR  161 (307)
Q Consensus        88 GVNfS~V~G~~~p~~a~~i~g~~~~~~F~AtGiS~V~Hp~nP~vPt~H~N~R~f~~~~------~WFGGG~DLTP~~~~~  161 (307)
                      |||||+|+|+++|++++++++..++.+|+|||||||+||+||+|||+|||+|||++.+      ||||||+|||||    
T Consensus        68 gVN~S~V~G~~~p~~a~~~~~~~~~~~f~A~GiSlViHP~NP~vPTvH~N~R~f~~~~~~~~~~~WFGGG~DLTP~----  143 (232)
T 1vju_A           68 GVNFSHVYGKGLPXSSTERHPDIAGCNFEAXGVSLVIHPKNPHVPTSHANVRLFVAEREGKEPVWWFGGGFDLTPY----  143 (232)
T ss_dssp             EEEEEEEEEEC-----------CTTCEEEEEEEEEEEEESSTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECS----
T ss_pred             CEEEEEEEECCCCHHHHHHCCCCCCCCCEEECCHHHHCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCHH----
T ss_conf             3417999904641023430444478751441211010135887762234469999825998614899764252166----


Q ss_pred             HCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             10432679999999984036567334289999767874345325212343010101478666589677999999999999
Q gi|254781073|r  162 RHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCF  241 (307)
Q Consensus       162 ~y~~~eD~~~fH~~~k~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFFD~l~~~~~~~~~e~~f~f~~~vg~~f  241 (307)
                       |+++||++|||+++|++||+|++++|++||+|||+|||||||+|+||||||||||||+    +++|++|+|+++||++|
T Consensus       144 -y~~~eD~~hFH~~~K~aCd~~~~~~Y~~fK~wCD~YFyi~HR~E~RGIGGIFfDdl~~----~~~e~~f~f~~~vg~af  218 (232)
T 1vju_A          144 -YAVEEDCRDFHQVAQDLCKPFGADVYARFKGWCDEYFFIPYRNEARGIGGLFFDDLNE----WPFEKCFEFVQAVGKGY  218 (232)
T ss_dssp             -SCCHHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHSEEGGGTEESSSEEEEEEEECS----SCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCHHHCCCCCCHHHHHHHCC----CCCCHHHHHHHHHHHHH
T ss_conf             -7779999999999998735110112167787633524240330245532100113306----76420089999999999


Q ss_pred             HHHHHHHHHHHCCC
Q ss_conf             99999999875479
Q gi|254781073|r  242 IKLYPSLVRRNYHH  255 (307)
Q Consensus       242 l~~y~~Iv~~r~~~  255 (307)
                      |++|+|||+||+++
T Consensus       219 l~aY~pIv~kr~~t  232 (232)
T 1vju_A          219 XDAYIPIVNRRKNT  232 (232)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99889999986379


No 3  
>>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structure initiative; 1.70A {Saccharomyces cerevisiae} (A:1-249)
Probab=100.00  E-value=0  Score=681.02  Aligned_cols=225  Identities=35%  Similarity=0.643  Sum_probs=209.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEE
Q ss_conf             88968766999999999999999999999999630102222344566512521231788888777504899505946536
Q gi|254781073|r    7 EIGCPDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEK   86 (307)
Q Consensus         7 ~~~~p~~ie~kk~~~~~wF~~LQd~Ic~~fE~lE~~~~~~~~~~~~~~F~~d~W~R~~g~~~~~GGG~s~VL~~G~VFEK   86 (307)
                      |.+.++..+.++..+++||+.||++||++||++|+.           +|.+|.|+|+.+    +|||+||||++|+||||
T Consensus         2 P~~~~~~~~~~~~~~~~~~~~lQ~~Ic~~le~~dg~-----------~F~~d~W~r~~~----gGGG~s~Vl~~G~VfEK   66 (249)
T 1txn_A            2 PAPQDPRNLPIRQQXEALIRRKQAEITQGLESIDTV-----------KFHADTWTRGND----GGGGTSXVIQDGTTFEK   66 (249)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHTTSSS-----------CCEECCCCCSCC----CSSSCEEEEESCSSEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CEEEEEEECCCC----CCCCEEEEECCCCHHHC
T ss_conf             899897643099999999999999999999965078-----------706540054799----99966999758841011


Q ss_pred             EEEEEEEEECCCHHHHHHHHHHCC----------------CCCCCEEECEEEEEECCCCCCCHHHCCHHHEEEC------
Q ss_conf             887776300354267764211102----------------6765100000223313688744010230210202------
Q gi|254781073|r   87 AAVLVSTVYGDLSPDFKDQILGTT----------------KNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTG------  144 (307)
Q Consensus        87 aGVNfS~V~G~~~p~~a~~i~g~~----------------~~~~F~AtGiS~V~Hp~nP~vPt~H~N~R~f~~~------  144 (307)
                      ||||||+|+|+++|++++++++..                ++.+|||||||||+||+||+|||+|||+|||+++      
T Consensus        67 aGVN~S~V~G~~~p~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~f~A~GiSlViHP~NP~vPtvH~N~R~fe~~~~~g~~  146 (249)
T 1txn_A           67 GGVNVSVVYGQLSPAAVSAXKADHKNLRLPEDPKTGLPVTDGVKFFACGLSXVIHPVNPHAPTTHLNYRYFETWNQDGTP  146 (249)
T ss_dssp             EEEEEEEEEEEECHHHHHTTGGGCTTCCCC----------CCEEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECTTSSE
T ss_pred             CCEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEHCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf             75579999831798999851311245667542223675335774167400200002578741001143279975488875


Q ss_pred             -CCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCC
Q ss_conf             -4312532001100000110432679999999984036567334289999767874345325212343010101478666
Q gi|254781073|r  145 -AYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPE  223 (307)
Q Consensus       145 -~~WFGGG~DLTP~~~~~~y~~~eD~~~fH~~~k~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFFD~l~~~~~  223 (307)
                       .||||||+||||+     |+++||++|||++||++||+|++++|++||+|||+|||||||+|+|||||||||||++   
T Consensus       147 ~~wWFGGG~DLTP~-----y~~~eD~~~FH~~lK~aCd~h~~~~Yp~fK~wCD~YFyi~HR~E~RGVGGIFfDdl~~---  218 (249)
T 1txn_A          147 QTWWFGGGADLTPS-----YLYEEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDE---  218 (249)
T ss_dssp             EEEEEEEEEEEECS-----SCCHHHHHHHHHHHHHHHHTTCTTHHHHHEECGGGGGGGGTCCCCCCCEEEEEEEECS---
T ss_pred             CEEEEEEEECCCCC-----CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCC---
T ss_conf             40488400114300-----2206889999999877642578688899998765640230330145300112455414---


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             58967799999999999999999999875479
Q gi|254781073|r  224 MGGIDADFSFISAVGDCFIKLYPSLVRRNYHH  255 (307)
Q Consensus       224 ~~~~e~~f~f~~~vg~~fl~~y~~Iv~~r~~~  255 (307)
                       +++|++|+|+++||++||++|+|||+||+|.
T Consensus       219 -~~~e~~f~F~~~vg~~fl~aY~pIv~krkd~  249 (249)
T 1txn_A          219 -RDPQEILKXVEDCFDAFLPSYLTIVKRRKDX  249 (249)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             -6427788999998877899999999974256


No 4  
>>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} (A:)
Probab=52.58  E-value=13  Score=17.66  Aligned_cols=32  Identities=31%  Similarity=0.727  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHH
Q ss_conf             679999999984036567---33428999976787
Q gi|254781073|r  167 PDVIFFHNTLKEMCSQHA---VANYTHYKEWCDRY  198 (307)
Q Consensus       167 eD~~~fH~~~k~~Cd~~~---~~~Y~~fKk~CD~Y  198 (307)
                      .|-..|-.-+|+.|....   .+-|.-.|.|||++
T Consensus        54 kde~~F~~Wlk~~~GAn~kQa~dcy~cLkeWcd~f   88 (89)
T 1ci4_A           54 KDEDLFREWLKDTCGANAKQSRDCFGCLREWCDAF   88 (89)
T ss_dssp             TCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             74999999999980889899999999999999972


No 5  
>>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} (A:1-155,A:240-354)
Probab=51.11  E-value=5.3  Score=20.17  Aligned_cols=84  Identities=15%  Similarity=0.099  Sum_probs=58.5

Q ss_pred             EEEEEE-C-CCEEEEEEE-EEEEEECCCHHHHHHHHHHCCC-CCCCEEECEEEEEECCCCCCCHHHCCHHHEEEC-----
Q ss_conf             489950-5-946536887-7763003542677642111026-765100000223313688744010230210202-----
Q gi|254781073|r   74 RMATLC-A-GKVFEKAAV-LVSTVYGDLSPDFKDQILGTTK-NPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTG-----  144 (307)
Q Consensus        74 ~s~VL~-~-G~VFEKaGV-NfS~V~G~~~p~~a~~i~g~~~-~~~F~AtGiS~V~Hp~nP~vPt~H~N~R~f~~~-----  144 (307)
                      ..+|+. | -..|+|||. ++..+||++++.+...+..... ---....|.|+.++|..=+|..+.-+...+.+.     
T Consensus       130 ~~~iiTqNiD~L~~kAG~~~vielHG~lp~~~~~~~~~~~~~~Dlllv~GTSL~V~p~~~lv~~~~~~~~~~~iN~~~t~  209 (270)
T 2hjh_A          130 LLRNYTQNIDNLESYAGISTDKLVQCALPNKFHKSIREDILECDLLICIGTSLKVAPVSEIVNXVPSHVPQVLINRDPVK  209 (270)
T ss_dssp             EEEEEECCCSCHHHHTTCCTTTEEETBCCHHHHHHHHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCT
T ss_pred             CCEEEECCCHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCEECCHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             23687316337788759975660220687899999999996499999989897347988999999838989998399889


Q ss_pred             ----CCCCCCCCCCC-CC
Q ss_conf             ----43125320011-00
Q gi|254781073|r  145 ----AYWFGGGIDLT-PS  157 (307)
Q Consensus       145 ----~~WFGGG~DLT-P~  157 (307)
                          ++++-|.||-. |.
T Consensus       210 ~d~~d~~i~g~~d~~l~~  227 (270)
T 2hjh_A          210 HAEFDLSLLGYCDDIAAX  227 (270)
T ss_dssp             TSCCSEEEESCHHHHHHH
T ss_pred             CCCCCEEEECCHHHHHHH
T ss_conf             998438995859999999


No 6  
>>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing; gene regulation, transferase; 1.70A {Homo sapiens} (A:22-153,A:205-323)
Probab=46.03  E-value=3.8  Score=21.12  Aligned_cols=56  Identities=14%  Similarity=0.160  Sum_probs=40.9

Q ss_pred             CEEEEEEE-EEEEEECCCHHHHHHHHHHCCCCCC-CEEECEEEEEECCCCCCCHHHCC
Q ss_conf             46536887-7763003542677642111026765-10000022331368874401023
Q gi|254781073|r   82 KVFEKAAV-LVSTVYGDLSPDFKDQILGTTKNPY-FWATGLSVIVHPYNPHVPAVHFN  137 (307)
Q Consensus        82 ~VFEKaGV-NfS~V~G~~~p~~a~~i~g~~~~~~-F~AtGiS~V~Hp~nP~vPt~H~N  137 (307)
                      ..|||||. ++..+||.++..+-..+....+.+- +--+|.|+.+||..=++=.+--+
T Consensus       117 ~L~~rAg~~~vielHG~Lp~~~~~~~~~d~~~~DlliViGTSl~V~P~a~lv~~~~~~  174 (251)
T 1j8f_A          117 TLERIAGLEQEDLVEASLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLS  174 (251)
T ss_dssp             CHHHHTTCCGGGEEETCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTT
T ss_pred             HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCEECCHHHHHHHHHCC
T ss_conf             3766059856666553799999999999996699999989988767887899999838


No 7  
>>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* (A:422-540)
Probab=34.52  E-value=26  Score=15.73  Aligned_cols=13  Identities=38%  Similarity=0.618  Sum_probs=9.3

Q ss_pred             HHHHHCCCCCHHH
Q ss_conf             9885420240112
Q gi|254781073|r  262 RQEQLIRRGRYAE  274 (307)
Q Consensus       262 k~~Ql~rRgRYvE  274 (307)
                      +--+..+||||||
T Consensus       107 ~l~~i~~r~ry~~  119 (119)
T 3en9_A          107 LMKDVERRARYVE  119 (119)
T ss_dssp             HHHHHHTCSCCC-
T ss_pred             HHHHHHHCCCCCC
T ss_conf             9999985057789


No 8  
>>1zru_A Lactophage P2 receptor binding protein; domains: beta barrel, beta prism, beta barrel, structural genomics; 1.73A {Lactococcus lactis phage P2} (A:1-150)
Probab=30.85  E-value=36  Score=14.82  Aligned_cols=36  Identities=14%  Similarity=0.239  Sum_probs=25.3

Q ss_pred             CCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEEE
Q ss_conf             665125212317888887775048995059465368
Q gi|254781073|r   52 PKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEKA   87 (307)
Q Consensus        52 ~~~F~~d~W~R~~g~~~~~GGG~s~VL~~G~VFEKa   87 (307)
                      -+.|+++.|..+-...-+.----+++|..|+.||--
T Consensus        35 Y~tirrkdW~~P~NtaLNvqY~nTSiiagGRYFEL~   70 (150)
T 1zru_A           35 YRTIRRKDWSSPLNTALNVQYTNTSIIAGGRYFELL   70 (150)
T ss_dssp             TTCCEEEEEECCEECSSEEEEEEEEEEETTEEEEEE
T ss_pred             CCEEEECCCCCCCCCCEEEEEECCEEEECCEEEEEE
T ss_conf             341870214774541035786044598744530222


No 9  
>>2r39_A FIXG-related protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.02A {Vibrio parahaemolyticus rimd 2210633} (A:)
Probab=26.58  E-value=16  Score=17.14  Aligned_cols=10  Identities=20%  Similarity=0.454  Sum_probs=3.1

Q ss_pred             HHHCCCCCCC
Q ss_conf             1110255357
Q gi|254781073|r  277 LLYDKGTNFG  286 (307)
Q Consensus       277 L~yDRGT~FG  286 (307)
                      .+-|||.+|=
T Consensus        15 V~rdR~~ly~   24 (118)
T 2r39_A           15 VIRDRNQLFR   24 (118)
T ss_dssp             EEECSSCCCC
T ss_pred             EEECCCCCEE
T ss_conf             9945877549


No 10 
>>3cvz_A S-layer protein; surface layer protein, protein binding, structural protein; 2.40A {Clostridium difficile} (A:1-93,A:237-273)
Probab=24.57  E-value=14  Score=17.52  Aligned_cols=24  Identities=25%  Similarity=0.530  Sum_probs=15.1

Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf             202401122111102553573578
Q gi|254781073|r  267 IRRGRYAEFNLLYDKGTNFGFKTG  290 (307)
Q Consensus       267 ~rRgRYvEFNL~yDRGT~FGL~t~  290 (307)
                      +--|.||+||..|+-+..+=-+||
T Consensus        75 LGDGdyVdF~ItY~~~~~~~~~~~   98 (130)
T 3cvz_A           75 LGDGDYVDFSVDYNLENKILAKSG   98 (130)
T ss_dssp             CCTTCEEEEEEEEEGGGCCSCSEE
T ss_pred             CCCCCEEEEEEEECCCCCECCCCC
T ss_conf             789985999998667552478887


No 11 
>>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} (A:388-469)
Probab=24.33  E-value=26  Score=15.67  Aligned_cols=14  Identities=50%  Similarity=1.044  Sum_probs=8.4

Q ss_pred             EECCCCCCCCCCCC
Q ss_conf             20243125320011
Q gi|254781073|r  142 VTGAYWFGGGIDLT  155 (307)
Q Consensus       142 ~~~~~WFGGG~DLT  155 (307)
                      ..++||||-+.=|.
T Consensus        37 V~GdV~FG~~V~l~   50 (82)
T 2icy_A           37 VSGDVWFGSSIVLK   50 (82)
T ss_dssp             EESEEEECSSCEEE
T ss_pred             EECCEEECCCEEEE
T ss_conf             95888984993995


No 12 
>>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} (A:404-488)
Probab=23.68  E-value=29  Score=15.39  Aligned_cols=10  Identities=30%  Similarity=0.733  Sum_probs=4.4

Q ss_pred             ECCCCCCCCC
Q ss_conf             0243125320
Q gi|254781073|r  143 TGAYWFGGGI  152 (307)
Q Consensus       143 ~~~~WFGGG~  152 (307)
                      .++||||-+.
T Consensus        38 ~GdV~FG~~V   47 (85)
T 2i5k_A           38 TGNVFLGKDV   47 (85)
T ss_dssp             ESSEEECTTC
T ss_pred             ECCEEECCCC
T ss_conf             7047985992


No 13 
>>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics, NPPSFA; HET: PLP; 2.40A {Archaeoglobus fulgidus} (A:1-18,A:270-371)
Probab=23.66  E-value=45  Score=14.19  Aligned_cols=63  Identities=16%  Similarity=0.196  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33428999976787434532521234301010147866658967799999999999999999999875
Q gi|254781073|r  185 VANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIKLYPSLVRRN  252 (307)
Q Consensus       185 ~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFFD~l~~~~~~~~~e~~f~f~~~vg~~fl~~y~~Iv~~r  252 (307)
                      +.+|.--++---.=|||-|-=-.|||+||+=-- ....+.    ..+-+..+-.....+++..|+++.
T Consensus        57 ~~~~eIAk~hKrrGfFly~ELkkRgI~Gi~pG~-Tk~~Kl----stYGl~~eqv~yv~daF~EIaeky  119 (120)
T 2e7j_A           57 EVLYEISKKAKGGRFFLYRELKSRKIHGIKPGL-TRYFKL----STYGLSDEEVDYVLNAFKEIIEKY  119 (120)
T ss_dssp             HHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTC-CSEEEE----ECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHCCCCHHHHHHHHCCCEEECCCC-CCEEEE----ECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             304678787531650678887665862464677-525888----357899999999999999999985


No 14 
>>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum dsm 1728} PDB: 2ohe_A (A:151-197)
Probab=22.33  E-value=27  Score=15.55  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=17.9

Q ss_pred             CCCHHHCCHHHEEECC--CCCCCC
Q ss_conf             7440102302102024--312532
Q gi|254781073|r  130 HVPAVHFNIRMIVTGA--YWFGGG  151 (307)
Q Consensus       130 ~vPt~H~N~R~f~~~~--~WFGGG  151 (307)
                      -+|.+.|--|-|-.++  ||.|-.
T Consensus         5 sapvvrmggrsfgagdlewwigta   28 (47)
T 2ohc_A            5 SAPVVRMGGRSFGAGDLEWWIGTA   28 (47)
T ss_dssp             CCCCEEETTEEEEETTSCTTSSEE
T ss_pred             CCCCCCCCCCEEECCCCHHHHCCC
T ss_conf             454432265301136403330544


No 15 
>>1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} (A:272-522)
Probab=22.09  E-value=39  Score=14.56  Aligned_cols=27  Identities=26%  Similarity=0.215  Sum_probs=20.5

Q ss_pred             CCCEEEEEEEEEEEEECCCHHHHHHHH
Q ss_conf             594653688777630035426776421
Q gi|254781073|r   80 AGKVFEKAAVLVSTVYGDLSPDFKDQI  106 (307)
Q Consensus        80 ~G~VFEKaGVNfS~V~G~~~p~~a~~i  106 (307)
                      +|...==++.|++..-|.+.|..+.++
T Consensus        52 ~G~~V~via~~~~~~gG~~~~~~~~K~   78 (251)
T 1x0u_A           52 AGNVVGIVANNPEEFGGSIDIDAADKA   78 (251)
T ss_dssp             TTEEEEEEEECTTTGGGCBCHHHHHHH
T ss_pred             CCCEEEEEEEECCCCCCCCCCHHHHHH
T ss_conf             680468985001136886573158999


No 16 
>>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} (A:108-158)
Probab=20.88  E-value=54  Score=13.65  Aligned_cols=44  Identities=18%  Similarity=0.198  Sum_probs=30.3

Q ss_pred             CCHHHEEECCCCCCCCCCCCCCCCHHH-----CCCHHHHHHHHHHHHHH
Q ss_conf             230210202431253200110000011-----04326799999999840
Q gi|254781073|r  136 FNIRMIVTGAYWFGGGIDLTPSLESRR-----HSYDPDVIFFHNTLKEM  179 (307)
Q Consensus       136 ~N~R~f~~~~~WFGGG~DLTP~~~~~~-----y~~~eD~~~fH~~~k~~  179 (307)
                      +|+-|-.....|.=|+.||+=++.|-.     ..+-|-...||.+||+.
T Consensus         2 ~N~~F~~~t~sw~CG~~~l~Y~~~D~~~aGfq~~lLEpL~kFh~~LkkL   50 (51)
T 2o4j_A            2 SNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKL   50 (51)
T ss_dssp             GGGTEETTTTEEECSSGGGEECHHHHHTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCCCEEECCCCEEECHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9998317887244078644540887741554599999999999999982


Done!