RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62] (307 letters) >gnl|CDD|144711 pfam01218, Coprogen_oxidas, Coproporphyrinogen III oxidase. Length = 296 Score = 354 bits (910), Expect = 2e-98 Identities = 116/288 (40%), Positives = 154/288 (53%), Gaps = 30/288 (10%) Query: 25 FENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVF 84 LQ IC E ++ A F W ++ + GGGR L G VF Sbjct: 7 LLGLQDRICAALEAIDGGAK----------FVEDAW-----ERPEGGGGRSRVLQDGNVF 51 Query: 85 EKAAVLVSTVYGDLSPDFKDQILGTTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIV-- 142 EKA V S V+G L P + F A G+S+++HP NP+VP VH N+R + Sbjct: 52 EKAGVNFSHVHGKLLPASATAMRPELAGRPFQAMGVSLVIHPRNPYVPTVHANVRYFIAE 111 Query: 143 ----TGAYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRY 198 +WFGGG DLTP + ++ D + FH T K+ C Y +K+WCD Y Sbjct: 112 KEGEEPVWWFGGGFDLTPY-----YGFEEDAVHFHQTAKDACDPFGPDYYPRFKKWCDEY 166 Query: 199 FYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIKLYPSLVRRNYHHLFS 258 FYL HR E RG+GGIFFD L+ G + F+F+ +VGD F+ Y +V R + Sbjct: 167 FYLKHRNEPRGVGGIFFDDLNE----GDFERSFAFVQSVGDAFLPAYLPIVERRKDTPYG 222 Query: 259 EQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASMPPLVAW 306 E++R+ QL RRGRY EFNL+YD+GT FG +TGG ESIL S+PPL W Sbjct: 223 EREREFQLYRRGRYVEFNLVYDRGTLFGLQTGGRTESILMSLPPLARW 270 >gnl|CDD|30757 COG0408, HemF, Coproporphyrinogen III oxidase [Coenzyme metabolism]. Length = 303 Score = 332 bits (853), Expect = 7e-92 Identities = 128/301 (42%), Positives = 163/301 (54%), Gaps = 29/301 (9%) Query: 13 DIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGG 72 DIE K+ + NLQ IC E L+ EA F W R+ E GG Sbjct: 2 DIEPDKQAVKAWLLNLQDEICAALEALDGEAK----------FVEDSWQRE----EGGGG 47 Query: 73 GRMATLCAGKVFEKAAVLVSTVYGDLSPDFKDQILGTTKNPYFWATGLSVIVHPYNPHVP 132 GR L G VFEK V STV+G+ SP+ + F+ATG+S++ HP NP+VP Sbjct: 48 GRSRVLMDGAVFEKGGVNFSTVFGEFSPESATAMRPELAGRRFFATGISLVAHPKNPYVP 107 Query: 133 AVHFNIRMIVTG------AYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQHAVA 186 VH N+R +WFGGG DLTP D + FH K+ C H Sbjct: 108 TVHLNVRYFEAEKPGAEPVWWFGGGADLTPYYGFEE-----DAVHFHRAAKDACDPHGPE 162 Query: 187 NYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIKLYP 246 +Y +K+WCD YFYL HR E RGIGGIFFD L+ + DF+F VG F+ Y Sbjct: 163 DYPRFKKWCDEYFYLKHRNEPRGIGGIFFDDLNE----PDFERDFAFTQDVGKAFLPAYL 218 Query: 247 SLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASMPPLVAW 306 +V R + ++E++R+ QL RRGRY EFNL+YD+GT FG +TGG VESIL S+PPLV W Sbjct: 219 PIVERRKNMPWTEREREFQLYRRGRYVEFNLVYDRGTLFGLQTGGRVESILMSLPPLVRW 278 Query: 307 P 307 Sbjct: 279 E 279 >gnl|CDD|36731 KOG1518, KOG1518, KOG1518, Coproporphyrinogen III oxidase CPO/HEM13 [Coenzyme transport and metabolism]. Length = 382 Score = 228 bits (582), Expect = 1e-60 Identities = 119/292 (40%), Positives = 155/292 (53%), Gaps = 26/292 (8%) Query: 30 SIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEKAAV 89 S I + E L EA I + + D+ + + GGG L G VFEKA V Sbjct: 76 SSIRAQMETLIREAQAEVCQALEAIDGGQKFKVDRWTRGEGGGGISCVLQDGNVFEKAGV 135 Query: 90 LVSTVYGDLSPDFKDQILGTTKN-------PYFWATGLSVIVHPYNPHVPAVHFNIRMIV 142 VS VYG L P+ + KN P+F A G+S ++HP NPH P HFN R Sbjct: 136 NVSVVYGVLPPEAVQAMRARHKNLKPTGPLPFF-AAGVSSVIHPKNPHAPTTHFNYRYFE 194 Query: 143 TGA------YWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCD 196 T +WFGGG DLTPS + ++ D FH KE C +H Y +K+WCD Sbjct: 195 TENADGVKQWWFGGGADLTPS-----YLFEEDGKHFHQLHKEACDKHDPTFYPRFKKWCD 249 Query: 197 RYFYLPHRQESRGIGGIFFDHLHS-SPEMGGIDADFSFISAVGDCFIKLYPSLVRRNYHH 255 YFY+ HR+E RGIGGIFFD L PE FSF++ + Y +V + Sbjct: 250 DYFYIKHRKERRGIGGIFFDDLDEPDPEEL-----FSFVTDCARAVVPSYIPIVEKRKDM 304 Query: 256 LFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGN-VESILASMPPLVAW 306 F+EQ++Q Q +RRGRY EFNL+YD+GT FG KT G+ +ESIL S+P +W Sbjct: 305 EFTEQEKQWQQLRRGRYVEFNLIYDRGTKFGLKTPGSRIESILMSLPLHASW 356 >gnl|CDD|33611 COG3818, COG3818, Predicted acetyltransferase, GNAT superfamily [General function prediction only]. Length = 167 Score = 28.4 bits (63), Expect = 2.3 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 181 SQHAVANYTHYKEWCDRYFYLPH-----RQESRGIGGIFFDHLHSSPEMGG 226 +++ N+ ++E + +FY+ R RG+ + L S E+ G Sbjct: 67 ARYDSPNFLWFRERYENFFYVDRVVVASRARGRGVARALYADLFSYAELAG 117 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.139 0.442 Gapped Lambda K H 0.267 0.0680 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,068,107 Number of extensions: 221899 Number of successful extensions: 508 Number of sequences better than 10.0: 1 Number of HSP's gapped: 495 Number of HSP's successfully gapped: 7 Length of query: 307 Length of database: 6,263,737 Length adjustment: 94 Effective length of query: 213 Effective length of database: 4,232,491 Effective search space: 901520583 Effective search space used: 901520583 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (25.8 bits)