RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase
[Candidatus Liberibacter asiaticus str. psy62]
         (307 letters)



>gnl|CDD|144711 pfam01218, Coprogen_oxidas, Coproporphyrinogen III oxidase. 
          Length = 296

 Score =  354 bits (910), Expect = 2e-98
 Identities = 116/288 (40%), Positives = 154/288 (53%), Gaps = 30/288 (10%)

Query: 25  FENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVF 84
              LQ  IC   E ++  A           F    W     ++ + GGGR   L  G VF
Sbjct: 7   LLGLQDRICAALEAIDGGAK----------FVEDAW-----ERPEGGGGRSRVLQDGNVF 51

Query: 85  EKAAVLVSTVYGDLSPDFKDQILGTTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIV-- 142
           EKA V  S V+G L P     +        F A G+S+++HP NP+VP VH N+R  +  
Sbjct: 52  EKAGVNFSHVHGKLLPASATAMRPELAGRPFQAMGVSLVIHPRNPYVPTVHANVRYFIAE 111

Query: 143 ----TGAYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRY 198
                  +WFGGG DLTP      + ++ D + FH T K+ C       Y  +K+WCD Y
Sbjct: 112 KEGEEPVWWFGGGFDLTPY-----YGFEEDAVHFHQTAKDACDPFGPDYYPRFKKWCDEY 166

Query: 199 FYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIKLYPSLVRRNYHHLFS 258
           FYL HR E RG+GGIFFD L+     G  +  F+F+ +VGD F+  Y  +V R     + 
Sbjct: 167 FYLKHRNEPRGVGGIFFDDLNE----GDFERSFAFVQSVGDAFLPAYLPIVERRKDTPYG 222

Query: 259 EQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASMPPLVAW 306
           E++R+ QL RRGRY EFNL+YD+GT FG +TGG  ESIL S+PPL  W
Sbjct: 223 EREREFQLYRRGRYVEFNLVYDRGTLFGLQTGGRTESILMSLPPLARW 270


>gnl|CDD|30757 COG0408, HemF, Coproporphyrinogen III oxidase [Coenzyme
           metabolism].
          Length = 303

 Score =  332 bits (853), Expect = 7e-92
 Identities = 128/301 (42%), Positives = 163/301 (54%), Gaps = 29/301 (9%)

Query: 13  DIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGG 72
           DIE  K+  +    NLQ  IC   E L+ EA           F    W R+    E  GG
Sbjct: 2   DIEPDKQAVKAWLLNLQDEICAALEALDGEAK----------FVEDSWQRE----EGGGG 47

Query: 73  GRMATLCAGKVFEKAAVLVSTVYGDLSPDFKDQILGTTKNPYFWATGLSVIVHPYNPHVP 132
           GR   L  G VFEK  V  STV+G+ SP+    +        F+ATG+S++ HP NP+VP
Sbjct: 48  GRSRVLMDGAVFEKGGVNFSTVFGEFSPESATAMRPELAGRRFFATGISLVAHPKNPYVP 107

Query: 133 AVHFNIRMIVTG------AYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQHAVA 186
            VH N+R            +WFGGG DLTP           D + FH   K+ C  H   
Sbjct: 108 TVHLNVRYFEAEKPGAEPVWWFGGGADLTPYYGFEE-----DAVHFHRAAKDACDPHGPE 162

Query: 187 NYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIKLYP 246
           +Y  +K+WCD YFYL HR E RGIGGIFFD L+        + DF+F   VG  F+  Y 
Sbjct: 163 DYPRFKKWCDEYFYLKHRNEPRGIGGIFFDDLNE----PDFERDFAFTQDVGKAFLPAYL 218

Query: 247 SLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASMPPLVAW 306
            +V R  +  ++E++R+ QL RRGRY EFNL+YD+GT FG +TGG VESIL S+PPLV W
Sbjct: 219 PIVERRKNMPWTEREREFQLYRRGRYVEFNLVYDRGTLFGLQTGGRVESILMSLPPLVRW 278

Query: 307 P 307
            
Sbjct: 279 E 279


>gnl|CDD|36731 KOG1518, KOG1518, KOG1518, Coproporphyrinogen III oxidase CPO/HEM13
           [Coenzyme transport and metabolism].
          Length = 382

 Score =  228 bits (582), Expect = 1e-60
 Identities = 119/292 (40%), Positives = 155/292 (53%), Gaps = 26/292 (8%)

Query: 30  SIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVFEKAAV 89
           S I  + E L  EA          I   + +  D+  + + GGG    L  G VFEKA V
Sbjct: 76  SSIRAQMETLIREAQAEVCQALEAIDGGQKFKVDRWTRGEGGGGISCVLQDGNVFEKAGV 135

Query: 90  LVSTVYGDLSPDFKDQILGTTKN-------PYFWATGLSVIVHPYNPHVPAVHFNIRMIV 142
            VS VYG L P+    +    KN       P+F A G+S ++HP NPH P  HFN R   
Sbjct: 136 NVSVVYGVLPPEAVQAMRARHKNLKPTGPLPFF-AAGVSSVIHPKNPHAPTTHFNYRYFE 194

Query: 143 TGA------YWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCD 196
           T        +WFGGG DLTPS     + ++ D   FH   KE C +H    Y  +K+WCD
Sbjct: 195 TENADGVKQWWFGGGADLTPS-----YLFEEDGKHFHQLHKEACDKHDPTFYPRFKKWCD 249

Query: 197 RYFYLPHRQESRGIGGIFFDHLHS-SPEMGGIDADFSFISAVGDCFIKLYPSLVRRNYHH 255
            YFY+ HR+E RGIGGIFFD L    PE       FSF++      +  Y  +V +    
Sbjct: 250 DYFYIKHRKERRGIGGIFFDDLDEPDPEEL-----FSFVTDCARAVVPSYIPIVEKRKDM 304

Query: 256 LFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGN-VESILASMPPLVAW 306
            F+EQ++Q Q +RRGRY EFNL+YD+GT FG KT G+ +ESIL S+P   +W
Sbjct: 305 EFTEQEKQWQQLRRGRYVEFNLIYDRGTKFGLKTPGSRIESILMSLPLHASW 356


>gnl|CDD|33611 COG3818, COG3818, Predicted acetyltransferase, GNAT superfamily
           [General function prediction only].
          Length = 167

 Score = 28.4 bits (63), Expect = 2.3
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 181 SQHAVANYTHYKEWCDRYFYLPH-----RQESRGIGGIFFDHLHSSPEMGG 226
           +++   N+  ++E  + +FY+       R   RG+    +  L S  E+ G
Sbjct: 67  ARYDSPNFLWFRERYENFFYVDRVVVASRARGRGVARALYADLFSYAELAG 117


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,068,107
Number of extensions: 221899
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 7
Length of query: 307
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 213
Effective length of database: 4,232,491
Effective search space: 901520583
Effective search space used: 901520583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)