RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase
[Candidatus Liberibacter asiaticus str. psy62]
(307 letters)
>gnl|CDD|180020 PRK05330, PRK05330, coproporphyrinogen III oxidase; Provisional.
Length = 300
Score = 376 bits (967), Expect = e-105
Identities = 125/305 (40%), Positives = 165/305 (54%), Gaps = 37/305 (12%)
Query: 11 PDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDL 70
++ R+ LQ IC E L+ EA F W Q+ +
Sbjct: 1 TMMEPDKARVKAW-LLGLQDRICAALEALDGEAR----------FVEDSW-----QRPEG 44
Query: 71 GGGRMATLCAGKVFEKAAVLVSTVYGDLSP----DFKDQILGTTKNPYFWATGLSVIVHP 126
GGGR L G+VFEKA V S V+G+ P + ++ G + F ATG+S++ HP
Sbjct: 45 GGGRSRVLENGRVFEKAGVNFSHVHGEFLPPSATAHRPELAGRS----FEATGVSLVAHP 100
Query: 127 YNPHVPAVHFNIRMIVTG----AYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQ 182
NP+VP VH N+R + +WFGGG DLTP ++ D + FH T K+ C
Sbjct: 101 RNPYVPTVHMNVRFFIATKPGPVWWFGGGFDLTPYYP-----FEEDAVHFHRTAKDACDP 155
Query: 183 HAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFI 242
Y +K+WCD YFYL HR E RG+GGIFFD L+S G + DF+F AVGD F+
Sbjct: 156 FGPEYYPRFKKWCDEYFYLKHRNEPRGVGGIFFDDLNS----PGFERDFAFTQAVGDAFL 211
Query: 243 KLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASMPP 302
Y +V R + E++R+ QL RRGRY EFNL+YD+GT FG +TGG ESIL S+PP
Sbjct: 212 DAYLPIVERRKDTPYGEREREFQLYRRGRYVEFNLVYDRGTLFGLQTGGRTESILMSLPP 271
Query: 303 LVAWP 307
LV W
Sbjct: 272 LVRWE 276
>gnl|CDD|178461 PLN02873, PLN02873, coproporphyrinogen-III oxidase.
Length = 274
Score = 253 bits (648), Expect = 5e-68
Identities = 106/255 (41%), Positives = 139/255 (54%), Gaps = 29/255 (11%)
Query: 71 GGGRMATLCAGKVFEKAAVLVSTVYGDLSPD---------FKDQILGTTKNPYFWATGLS 121
GGG L G VFEKA V VS VYG + P+ + P+F A GLS
Sbjct: 4 GGGISRVLQDGNVFEKAGVNVSVVYGTMPPEAYRAATGRGSRKGGDPAGGVPFF-AAGLS 62
Query: 122 VIVHPYNPHVPAVHFNIRMIVTGA----------YWFGGGIDLTPSLESRRHSYDPDVIF 171
++HP NP P HFN R T A +WFGGG DLTPS + ++ DV
Sbjct: 63 SVMHPKNPMAPTFHFNYRYFETDAPKDVPGAPRQWWFGGGTDLTPS-----YLFEEDVKH 117
Query: 172 FHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADF 231
FH T K++C +H Y +K+WCD YFY+ HR E RG+GGIFFD L+ +
Sbjct: 118 FHGTYKDVCDKHDPEFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLND----RDQEDLL 173
Query: 232 SFISAVGDCFIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGG 291
+F + V + + Y +V + F+E+ + Q +RRGRY EFNL+YD+GT FG KTGG
Sbjct: 174 AFATDVANSVVPAYLPIVEKRKDDPFTEEQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGG 233
Query: 292 NVESILASMPPLVAW 306
+ESIL S+PP W
Sbjct: 234 RIESILVSLPPTARW 248
>gnl|CDD|102369 PRK06424, PRK06424, transcription factor; Provisional.
Length = 144
Score = 30.3 bits (68), Expect = 0.57
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 64 KSQKEDLGGGRMATLCAGKVFEKAAVLVSTVYGDLSPDFK-----DQILGTT 110
K+ +E L + A L A K+FE+ V+ S GDL PD K ++ILG T
Sbjct: 90 KNARERLSMSQ-ADL-AAKIFERKNVIASIERGDLLPDIKTARKLEKILGIT 139
>gnl|CDD|180699 PRK06799, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 431
Score = 29.9 bits (67), Expect = 0.85
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 101 DFKDQILGTTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTG 144
D +D+IL T + Y + V NP++ +V N + V G
Sbjct: 200 DERDRIL-TEMSKY---ANIEVSYESMNPNIASVRMNGVLTVNG 239
>gnl|CDD|177604 PHA03367, PHA03367, single-stranded DNA binding protein;
Provisional.
Length = 1115
Score = 30.0 bits (68), Expect = 0.87
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 28/92 (30%)
Query: 118 TGLSVIVHPYNPHVPAVHFNIRMIVTGAYWFGGGIDLTPSLESRRHSYDPDVIFFHNT-- 175
GL+V ++ +V A H I G + + + S+ + I FHNT
Sbjct: 50 CGLTV-EPDFSFNVKAPHKKIDP---------GTVLVKVT------SFHREAIVFHNTDK 93
Query: 176 ---------LKEMCSQ-HAVANYTHYKEWCDR 197
L+ +C + YT + R
Sbjct: 94 FPPIFEGPGLERLCEETREKFGYTSFVPPGSR 125
>gnl|CDD|183297 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
Length = 1485
Score = 29.1 bits (66), Expect = 1.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 10/36 (27%)
Query: 163 HSYDPDVIFFHNTLKEMCSQHAVA--NYTHYKEWCD 196
H+Y+PDV+ NTL Q AV +Y+ Y+E+
Sbjct: 796 HAYNPDVV---NTL-----QKAVQSGDYSDYQEYAK 823
>gnl|CDD|185064 PRK15109, PRK15109, antimicrobial peptide ABC transporter
periplasmic binding protein SapA; Provisional.
Length = 547
Score = 28.5 bits (64), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 164 SYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYF 199
S DPD F + + S A+ + T+Y WCD F
Sbjct: 441 SNDPDSFF-----RPLLSCAAIRSQTNYAHWCDPAF 471
>gnl|CDD|162465 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 27.3 bits (61), Expect = 4.6
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 88 AVLVST-VYGDL--SPDFKDQILGTTKNPYFWATGLSVIV 124
L+ VY + SP F FW L +++
Sbjct: 992 VWLIFVIVYSSIFPSPAFYKAAPRVMGTFGFWLVLLVIVL 1031
>gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 26.7 bits (59), Expect = 7.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 13 DIEERKRISQRKFENLQSIICTEFEKLENEAHE 45
+++E K I + F LQ +I E K+EN HE
Sbjct: 1252 NVDELKEIKLQVFSYLQQVI-KENNKMENALHE 1283
>gnl|CDD|177575 PHA03283, PHA03283, envelope glycoprotein E; Provisional.
Length = 542
Score = 26.8 bits (59), Expect = 7.6
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 109 TTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVTGAYWFGGGIDLTPSLESRRHSYDPD 168
T K P + P P F++R + Y G DL+ LES DP
Sbjct: 167 TVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLSVHLES--DIGDPS 224
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.139 0.442
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,252,053
Number of extensions: 337417
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 16
Length of query: 307
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 214
Effective length of database: 3,984,929
Effective search space: 852774806
Effective search space used: 852774806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)