RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase
[Candidatus Liberibacter asiaticus str. psy62]
         (307 letters)



>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania
           major [TaxId: 5664]}
          Length = 302

 Score =  254 bits (650), Expect = 6e-69
 Identities = 105/288 (36%), Positives = 141/288 (48%), Gaps = 30/288 (10%)

Query: 25  FENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDLGGGRMATLCAGKVF 84
              LQ  IC   E  + +A           F    W      +E  GGGR   +  G V 
Sbjct: 13  LLKLQDDICEALEAEDGQAT----------FVEDKW-----TREGGGGGRTRVMVDGAVI 57

Query: 85  EKAAVLVSTVYGDLSPDFKDQILGTTKNPYFWATGLSVIVHPYNPHVPAVHFNIRMIVT- 143
           EK  V  S VYG   P    +         F A G+S+++HP NPHVP  H N+R+ V  
Sbjct: 58  EKGGVNFSHVYGKGLPMSSTERHPDIAGCNFEAMGVSLVIHPKNPHVPTSHANVRLFVAE 117

Query: 144 -----GAYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRY 198
                  +WFGGG DLTP               FH   +++C       Y  +K WCD Y
Sbjct: 118 REGKEPVWWFGGGFDLTPYYAVEEDC-----RDFHQVAQDLCKPFGADVYARFKGWCDEY 172

Query: 199 FYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDCFIKLYPSLVRRNYHHLFS 258
           F++P+R E+RGIGG+FFD L+        +  F F+ AVG  ++  Y  +V R  +  ++
Sbjct: 173 FFIPYRNEARGIGGLFFDDLNE----WPFEKCFEFVQAVGKGYMDAYIPIVNRRKNTPYT 228

Query: 259 EQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASMPPLVAW 306
           EQ  + Q  RRGRYAEFNL+ D+GT FG ++GG  ESIL S+PP   W
Sbjct: 229 EQQVEFQEFRRGRYAEFNLVIDRGTKFGLQSGGRTESILISLPPRARW 276


>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 325

 Score =  244 bits (624), Expect = 7e-66
 Identities = 112/320 (35%), Positives = 152/320 (47%), Gaps = 49/320 (15%)

Query: 11  PDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHWLRDKSQKEDL 70
           P ++  R+++        Q+ I    E ++              F    W R      D 
Sbjct: 4   PRNLPIRQQMEAL-IRRKQAEITQGLESIDTVK-----------FHADTWTRGN----DG 47

Query: 71  GGGRMATLCAGKVFEKAAVLVSTVYGDLSPDFKDQILGTTKNPY---------------- 114
           GGG    +  G  FEK  V VS VYG LSP     +    KN                  
Sbjct: 48  GGGTSMVIQDGTTFEKGGVNVSVVYGQLSPAAVSAMKADHKNLRLPEDPKTGLPVTDGVK 107

Query: 115 FWATGLSVIVHPYNPHVPAVHFNIRMIVTG-------AYWFGGGIDLTPSLESRRHSYDP 167
           F+A GLS+++HP NPH P  H N R   T         +WFGGG DLTPS     + Y+ 
Sbjct: 108 FFACGLSMVIHPVNPHAPTTHLNYRYFETWNQDGTPQTWWFGGGADLTPS-----YLYEE 162

Query: 168 DVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGI 227
           D   FH   K+   +H  A Y  +K+WCD YFY+ HR+E+RGIGGIFFD           
Sbjct: 163 DGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQE-- 220

Query: 228 DADFSFISAVGDCFIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGF 287
                 +    D F+  Y ++V+R     ++++++Q Q IRRGRY EFNL+YD+GT FG 
Sbjct: 221 --ILKMVEDCFDAFLPSYLTIVKRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGL 278

Query: 288 KT-GGNVESILASMPPLVAW 306
           +T G  VESIL S+P   +W
Sbjct: 279 RTPGSRVESILMSLPEHASW 298


>d1poca_ a.133.1.1 (A:) Phospholipase A2 {European honeybee (Apis
           mellifera) [TaxId: 7460]}
          Length = 134

 Score = 27.5 bits (61), Expect = 1.3
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 161 RRHSYDPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFY-----LPHRQESRGIGGIFF 215
           R H   PDV+    +   + +     ++T     CD  FY           S  +G ++F
Sbjct: 32  RTHDMCPDVMSAGESKHGLTNTA---SHTRLSCDCDDKFYDCLKNSADTISSYFVGKMYF 88

Query: 216 DHLHSS 221
           + + + 
Sbjct: 89  NLIDTK 94


>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
           TRIO {Human (Homo sapiens) [TaxId: 9606]}
          Length = 184

 Score = 25.8 bits (56), Expect = 5.2
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 217 HLHSSPEMGGIDADFSFISAVGDCFIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFN 276
             H++  +  ++        VG CF+        + Y      +    QLI     + F+
Sbjct: 60  EFHNNIFLKELEKYEQLPEDVGHCFVTWADKF--QMYVTYCKNKPDSTQLILEHAGSYFD 117


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 25.5 bits (56), Expect = 5.9
 Identities = 6/21 (28%), Positives = 7/21 (33%)

Query: 155 TPSLESRRHSYDPDVIFFHNT 175
             SL+     Y   V  FH  
Sbjct: 72  AVSLKLTPSHYSSSVYVFHGG 92


>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type
           2 [TaxId: 10515]}
          Length = 646

 Score = 24.7 bits (54), Expect = 8.8
 Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 10/28 (35%)

Query: 157 SLESRRH----------SYDPDVIFFHN 174
           S+  R            SYDPDV    N
Sbjct: 383 SIGDRTRYFSMWNQAVDSYDPDVRIIEN 410


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0326    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,259,217
Number of extensions: 60979
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 13
Length of query: 307
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,240,546
Effective search space: 275401212
Effective search space used: 275401212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)