BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase
[Candidatus Liberibacter asiaticus str. psy62]
         (307 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 307

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/307 (100%), Positives = 307/307 (100%)

Query: 1   MNLCTIEIGCPDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHW 60
           MNLCTIEIGCPDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHW
Sbjct: 1   MNLCTIEIGCPDDIEERKRISQRKFENLQSIICTEFEKLENEAHENSANRSPKIFTVKHW 60

Query: 61  LRDKSQKEDLGGGRMATLCAGKVFEKAAVLVSTVYGDLSPDFKDQILGTTKNPYFWATGL 120
           LRDKSQKEDLGGGRMATLCAGKVFEKAAVLVSTVYGDLSPDFKDQILGTTKNPYFWATGL
Sbjct: 61  LRDKSQKEDLGGGRMATLCAGKVFEKAAVLVSTVYGDLSPDFKDQILGTTKNPYFWATGL 120

Query: 121 SVIVHPYNPHVPAVHFNIRMIVTGAYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMC 180
           SVIVHPYNPHVPAVHFNIRMIVTGAYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMC
Sbjct: 121 SVIVHPYNPHVPAVHFNIRMIVTGAYWFGGGIDLTPSLESRRHSYDPDVIFFHNTLKEMC 180

Query: 181 SQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDC 240
           SQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDC
Sbjct: 181 SQHAVANYTHYKEWCDRYFYLPHRQESRGIGGIFFDHLHSSPEMGGIDADFSFISAVGDC 240

Query: 241 FIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASM 300
           FIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASM
Sbjct: 241 FIKLYPSLVRRNYHHLFSEQDRQEQLIRRGRYAEFNLLYDKGTNFGFKTGGNVESILASM 300

Query: 301 PPLVAWP 307
           PPLVAWP
Sbjct: 301 PPLVAWP 307


>gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 304

 Score = 23.9 bits (50), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 6/39 (15%)

Query: 166 DPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHR 204
           D D++F    L+EM S +AVA       WC   FY   R
Sbjct: 65  DADIVF----LQEMGSYNAVAKVFPKNTWC--IFYSTER 97


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,578
Number of Sequences: 1233
Number of extensions: 9062
Number of successful extensions: 12
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 307
length of database: 328,796
effective HSP length: 74
effective length of query: 233
effective length of database: 237,554
effective search space: 55350082
effective search space used: 55350082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)