HHsearch alignment for GI: 254781074 and conserved domain: pfam03585
>pfam03585 Herpes_ICP4_C Herpesvirus ICP4-like protein C-terminal region. The immediate-early protein ICP4 (infected-cell polypeptide 4) is required for efficient transcription of early and late viral genes and is thus essential for productive infection. ICP4 is a large phosphoprotein that binds DNA in a sequence specific manner as a homodimer. ICP4 represses transcription from LAT, ICP4 and ORF-P that have high-affinity a ICP4 binding site that spans the transcription initiation site. ICP4 proteins have two highly conserved regions, this family contains the C-terminal region that probably acts as an enhancer for the N-terminal region.
Probab=93.53 E-value=0.64 Score=26.49 Aligned_cols=184 Identities=16% Similarity=0.219 Sum_probs=98.0
Q ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC-----------EECCCHHHHHHHHHCC-CHHHCEEEEEECCCC
Q ss_conf 8686873389998887265899999999999997798-----------0858876999998429-986177999811888
Q gi|254781074|r 2 EGVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGK-----------RIFPRGSHYFRAFDIT-PFNKVKVVILGQDPY 69 (227)
Q Consensus 2 ~~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~-----------~i~P~~~~IF~af~~~-p~~~vKVVIlGQDPY 69 (227)
T Consensus 35 d~plfP~~WRpaL~--fdP~ALA~IAa-----r~~~~~~~~~~~~g~l~as~pLRrr~AWMrQi~dPEDVrvVvLY-~PL 106 (425)
T pfam03585 35 DHPLFPEPWRPALA--FDPEALAEIAA-----RCNGPPPRSDRGFGPLTASGPLRRRTAWMRQIADPEDVRVVVLY-SPL 106 (425)
T ss_pred CCCCCCCCCCHHHC--CCHHHHHHHHH-----HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEE-CCC
T ss_conf 78767754322220--49899999986-----43799985555437644436788888887518984333799983-699
Q ss_pred CCCCCCCC---------CEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC----------CHHHHHHCCCEEEECCHHCC
Q ss_conf 77520007---------100034798630469999999997418888774----------01243220896886010112
Q gi|254781074|r 70 HNYGQAHG---------LCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTH----------GFLEHWGHEGVLLLNAVLTV 130 (227)
Q Consensus 70 ~~~g~A~G---------LaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~----------g~L~~Wa~QGVLLLNt~LTv 130 (227)
T Consensus 107 pgE~L~~~~~~~~~~~~P~w~~~rG-----GLS~LLAAl~NRLc--~p~s~AWAGnWtgaPDiSaLnaqGVLlLSt---- 175 (425)
T pfam03585 107 PGEHLFGVPPPGDPPGGPRWSPTRG-----GLSFLLAALSNRLC--LPDSHAWAGNWTGAPDISALNAQGVLLLST---- 175 (425)
T ss_pred CCHHHCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHHHCCCC--CCCCHHHCCCCCCCCCCCHHHCCCEEEEEC----
T ss_conf 9525317798888889987786777-----49999999856555--865303206767898723120071599752----
Q ss_pred CCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH---HCCCCCCCEEEEECCCCHHH-------------
Q ss_conf 36860445432599999999999961789879999753233344---20576660799847888222-------------
Q gi|254781074|r 131 EEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQ---DVLDHKRHLVLKAAHPSPLS------------- 194 (227)
Q Consensus 131 ~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~---~~i~~~~~~il~~~HPSPls------------- 194 (227)
T Consensus 176 --------~DL~FaGaVEyL~l~~~~a~rRLIV~D-tV~~~dwP~dGPavs-~~h~Y~r~~-v~P~aqc~vRWP~~~~L~ 244 (425)
T pfam03585 176 --------RDLAFAGAVEYLCLRLGSARRRLIVLD-TVDPEDWPEDGPAVS-QYHVYVRCA-VSPRAQCAVRWPGARDLA 244 (425)
T ss_pred --------CHHHHHHHHHHHHHHHHHCCCEEEEEE-CCCHHHCCCCCCCCE-EEEEEEECC-CCCHHHCEEECCCCCCHH
T ss_conf --------302567699999998752464179972-457311788897111-105788544-472122133378852110
Q ss_pred ----CCCCCCCCCHHHHHHHHHHHC
Q ss_conf ----578862787089999999987
Q gi|254781074|r 195 ----ASHGFFGCRHFSKANRYLQEH 215 (227)
Q Consensus 195 ----~~~gF~~~~~F~~~N~~L~~~ 215 (227)
T Consensus 245 raVltS~~v~GP~~farvEaafarl 269 (425)
T pfam03585 245 RAVLTSSRVFGPGSFARVEAAFARL 269 (425)
T ss_pred HHHEECCCCCCCHHHHHHHHHHHHH
T ss_conf 3421035544717999999999864