HHsearch alignment of GI: 254781074 and MMDB domain: 1ui0_A_
>1ui0_A (A:) Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus}
Probab=91.92 E-value=0.36 Score=27.67 Aligned_cols=137 Identities=17% Similarity=0.079 Sum_probs=71.3
Q ss_pred HHHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCC--CC
Q ss_conf 8617799981188877520007100034798630469999999997418888774012432208968860101123--68
Q gi|254781074|r 56 FNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVE--EG 133 (227)
Q Consensus 56 ~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~--~g 133 (227)
..+-||+||||.|=.. ...+|..|+-..+. =|++++.++ |+.. +-|.+.|.+=-.. ..
T Consensus 31 ~~~a~iliIg~~P~~~-~~~~G~~f~g~aG~----~L~~~l~~~----gl~~-----------~~vyit~lvkc~p~~~~ 90 (205)
T 1ui0_A 31 NPDAKLMIVGEGPGEE-EDKTGRPFVGKAGQ----LLNRILEAA----GIPR-----------EEVYITNIVKCRPPQNR 90 (205)
T ss_dssp CTTCSEEEEESCCCHH-HHHHSCSSCSHHHH----HHHHHHHHH----TCCG-----------GGSEEEESCSSCCGGGC
T ss_pred CCCCCEEEEECCHHHH-HHHHHHCCCCCHHH----HHHHHHHHH----CCCH-----------HHEEEEEEEEECCCCCC
T ss_conf 9999999997821454-44444111535043----688889983----9889-----------99588614646033456
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCC------------CCCCCEEEEECCCCHHHCCCCCCC
Q ss_conf 60445432599999999999961789879999753233344205------------766607998478882225788627
Q gi|254781074|r 134 RAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVL------------DHKRHLVLKAAHPSPLSASHGFFG 201 (227)
Q Consensus 134 ~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i------------~~~~~~il~~~HPSPls~~~gF~~ 201 (227)
.+.... .+......++...+.-++-+.++.|+.|.+..--- +.....++-..|||++.....-..
T Consensus 91 ~~~~~e---i~~c~~~~L~~ei~l~~P~~ii~lG~~a~~~ll~~~~~~~~~~g~~~~~~~~~~~~~~hPS~l~~~~~~~~ 167 (205)
T 1ui0_A 91 APLPDE---AKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGEKVSITKVRGKWYEWHGIKVFPMFHPAYLLRNPSRAP 167 (205)
T ss_dssp CCCHHH---HHHHHHHTHHHHHHHHCCSEEEEBSHHHHHHHHTSCCCHHHHTTCCEEETTEEECCBCCHHHHHHSCCCST
T ss_pred CCCHHH---HHHHHHHHHHHHHHHCCCCEEEECCCHHEEHHHHCCCCHHHHCCCEEECCCCEEEEECCCHHHHHCCCCCC
T ss_conf 798599---99999999999998548848995250100011310352012148348628977999828689876925343
Q ss_pred C-------CHHHHHHHHHHHC
Q ss_conf 8-------7089999999987
Q gi|254781074|r 202 C-------RHFSKANRYLQEH 215 (227)
Q Consensus 202 ~-------~~F~~~N~~L~~~ 215 (227)
- ..+.++.+.|.+.
T Consensus 168 p~~~~~~~~~L~~~~~~l~~~ 188 (205)
T 1ui0_A 168 GSPKHLTWLDIQEVKRALDAL 188 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHCC
T ss_conf 046789999999999999726