HHsearch results for GI: 254781074 and protein with PDBid: 3cxm_A
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MSGPP, SGPP, hydrolase, 5-bromouracil, structural genomics; 1.50A {Leishmania naiffi}
Probab=100.00 E-value=0 Score=614.15 Aligned_cols=227 Identities=47% Similarity=0.920 Sum_probs=216.7
Q ss_pred CCCCCCCHHHHHHHH----HHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCC
Q ss_conf 986868733899988----8726589999999999999779808588769999984299861779998118887752000
Q gi|254781074|r 1 MEGVKIHESWKSLLE----NHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAH 76 (227)
Q Consensus 1 l~~l~i~~sW~~~L~----~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~ 76 (227)
+..+-++++|+++|+ +++.++||.+|.+||.+|+.++++|||+.++|||||++||+++||||||||||||++|||+
T Consensus 31 ~~~~~~dp~W~~~L~p~~~~~~~k~~f~~l~~fl~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPYh~~gqA~ 110 (268)
T 3cxm_A 31 LAGLITNPEWRDFLAPITADSWRKGAFIRIERFLDEEKEKGRVILPPAADIFNAFNSCPFRGLKVVLLGQDPYHDLHQAH 110 (268)
T ss_dssp TGGGCCCHHHHHHHHHHHSTTTTTTHHHHHHHHHHHHHHTTCCEESCGGGTTHHHHTSCSTTCCEEEEESSCCCSTTTCC
T ss_pred HHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCC
T ss_conf 66566894599998663305230299999999999999869977698799999886089879379997427998999710
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHC-CHHHHHHHHHHHH
Q ss_conf 710003479863046999999999741-88887740124322089688601011236860445432-5999999999999
Q gi|254781074|r 77 GLCFSVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGR-GWEQFTDSVIDLI 154 (227)
Q Consensus 77 GLaFsv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~-gW~~ft~~ii~~l 154 (227)
||||||++++++|||||||||||.+|+ ++..+.+|||+.||+||||||||+|||++|+++||+++ ||++||+.||++|
T Consensus 111 GLaFSv~~~~k~PpSLrNI~KeL~~d~~~~~~p~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~~GWe~fT~~vI~~i 190 (268)
T 3cxm_A 111 GLCFSVLPEVPLPPSLRNIYKELTTDIAGFQAPKHGYLQSWSEQGMLMLNATLTVEAHKANSHSKTSGWAAFTDAVIQHL 190 (268)
T ss_dssp SSTTCCCTTSCCCHHHHHHHHHHHHHSTTCCCCSSCCCHHHHTTTEEEEESSCCEETTCTTTTTTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 68654899999981599999999975288889998526889849858873248887787343578877899999999999
Q ss_pred HCCCC-CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 61789-87999975323334420576660799847888222578862787089999999987889746508898
Q gi|254781074|r 155 SNNHQ-NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIPLS 227 (227)
Q Consensus 155 ~~~~~-~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~lp~~ 227 (227)
+++++ ++||||||++||+++.+|+.++|+||+++|||||||+||||||+||++||+||+++|++||||+||++
T Consensus 191 ~~~~~~~vVflLWG~~Aq~~~~~i~~~~h~Il~s~HPSPLSa~rgF~g~~~Fsk~N~~L~~~g~~pIdW~lp~~ 264 (268)
T 3cxm_A 191 SQHHPNRLVFLLWGGYAQQKKRLIDANRHVVLENVHPSPLSANRGWFGCRCFSACNEALQRMSHLPMHWQLPLN 264 (268)
T ss_dssp HHHCSSCCEEEEESHHHHGGGGGSCTTTSEEEEECCSSHHHHTTTTTTCCHHHHHHHHHHHTTCCCCCCCCCSS
T ss_pred HHCCCCCEEEEEECHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf 85277887999717589998842898786699757999734467988887689999999977999872228998