Query gi|254781074|ref|YP_003065487.1| uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 227 No_of_seqs 140 out of 1475 Neff 5.8 Searched_HMMs 23785 Date Wed Jun 1 00:15:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781074.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3cxm_A Uracil-DNA glycosylase; 100.0 0 0 614.1 21.0 227 1-227 31-264 (268) 2 2boo_A UDG, uracil-DNA glycosy 100.0 0 0 597.5 23.2 223 3-227 20-243 (247) 3 3a7n_A UDG, uracil-DNA glycosy 100.0 0 0 598.2 19.8 218 5-225 20-238 (238) 4 4eug_A UDG, UNG, protein (glyc 100.0 0 0 596.9 20.7 218 7-225 4-222 (229) 5 3fci_A UDG, uracil-DNA glycosy 100.0 0 0 591.6 20.5 220 1-223 1-221 (223) 6 1udg_A Uracil-DNA glycosylase; 100.0 0 0 589.5 18.1 219 3-224 25-244 (244) 7 2j8x_A Uracil-DNA glycosylase; 100.0 0 0 582.1 19.9 221 2-224 2-231 (231) 8 2owr_A UDG, uracil-DNA glycosy 100.0 0 0 476.5 13.3 203 2-223 11-213 (218) 9 1oe4_A SMUG1, single-strand se 96.7 0.021 9E-07 34.3 10.4 148 54-217 50-241 (247) 10 1mug_A Protein (G:T/U specific 95.7 0.12 4.9E-06 29.7 11.1 127 57-194 8-145 (168) 11 1wyw_A TDG, G/T mismatch-speci 95.7 0.12 4.9E-06 29.7 11.5 146 57-216 21-191 (230) 12 1vk2_A Uracil-DNA glycosylase 91.2 0.56 2.4E-05 25.5 6.4 116 57-197 49-181 (204) 13 3ikb_A Uncharacterized conserv 89.5 0.62 2.6E-05 25.2 5.4 116 54-194 34-169 (198) 14 1ui0_A Uracil-DNA glycosylase; 87.6 0.84 3.5E-05 24.4 5.1 136 57-216 32-189 (205) 15 2c2q_A G/U mismatch-specific D 86.6 1.8 7.4E-05 22.4 6.7 126 57-197 24-167 (199) 16 2l3f_A Uncharacterized protein 78.1 0.45 1.9E-05 26.1 0.5 129 57-198 12-145 (166) 17 2d3y_A Uracil-DNA glycosylase; 66.0 7.1 0.0003 18.7 10.8 129 57-196 49-197 (219) 18 2vdj_A Homoserine O-succinyltr 63.5 1.3 5.4E-05 23.3 0.1 34 139-174 118-151 (301) 19 2ywr_A Phosphoribosylglycinami 36.1 22 0.00092 15.6 4.0 54 143-199 65-119 (216) 20 3da8_A Probable 5'-phosphoribo 33.1 25 0.001 15.3 3.4 56 142-200 73-129 (215) 21 2h2w_A Homoserine O-succinyltr 33.0 7.7 0.00032 18.5 0.1 33 139-173 130-162 (312) 22 1meo_A Phosophoribosylglycinam 29.2 28 0.0012 14.9 3.7 53 144-199 65-118 (209) 23 2kyg_A CAMP-dependent protein 28.0 21 0.00089 15.8 1.6 38 79-118 2-39 (50) 24 1fzq_A ADP-ribosylation factor 22.2 26 0.0011 15.2 1.2 22 46-67 4-25 (181) 25 3euf_A Uridine phosphorylase 1 22.0 23 0.00099 15.5 0.9 13 56-68 68-80 (328) No 1 >3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MSGPP, SGPP, hydrolase, 5-bromouracil, structural genomics; 1.50A {Leishmania naiffi} Probab=100.00 E-value=0 Score=614.15 Aligned_cols=227 Identities=47% Similarity=0.920 Sum_probs=216.7 Q ss_pred CCCCCCCHHHHHHHH----HHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCC Q ss_conf 986868733899988----8726589999999999999779808588769999984299861779998118887752000 Q gi|254781074|r 1 MEGVKIHESWKSLLE----NHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAH 76 (227) Q Consensus 1 l~~l~i~~sW~~~L~----~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~ 76 (227) +..+-++++|+++|+ +++.++||.+|.+||.+|+.++++|||+.++|||||++||+++||||||||||||++|||+ T Consensus 31 ~~~~~~dp~W~~~L~p~~~~~~~k~~f~~l~~fl~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPYh~~gqA~ 110 (268) T 3cxm_A 31 LAGLITNPEWRDFLAPITADSWRKGAFIRIERFLDEEKEKGRVILPPAADIFNAFNSCPFRGLKVVLLGQDPYHDLHQAH 110 (268) T ss_dssp TGGGCCCHHHHHHHHHHHSTTTTTTHHHHHHHHHHHHHHTTCCEESCGGGTTHHHHTSCSTTCCEEEEESSCCCSTTTCC T ss_pred HHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCC T ss_conf 66566894599998663305230299999999999999869977698799999886089879379997427998999710 Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHC-CHHHHHHHHHHHH Q ss_conf 710003479863046999999999741-88887740124322089688601011236860445432-5999999999999 Q gi|254781074|r 77 GLCFSVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGR-GWEQFTDSVIDLI 154 (227) Q Consensus 77 GLaFsv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~-gW~~ft~~ii~~l 154 (227) ||||||++++++|||||||||||.+|+ ++..+.+|||+.||+||||||||+|||++|+++||+++ ||++||+.||++| T Consensus 111 GLaFSv~~~~k~PpSLrNI~KeL~~d~~~~~~p~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~~GWe~fT~~vI~~i 190 (268) T 3cxm_A 111 GLCFSVLPEVPLPPSLRNIYKELTTDIAGFQAPKHGYLQSWSEQGMLMLNATLTVEAHKANSHSKTSGWAAFTDAVIQHL 190 (268) T ss_dssp SSTTCCCTTSCCCHHHHHHHHHHHHHSTTCCCCSSCCCHHHHTTTEEEEESSCCEETTCTTTTTTTSCHHHHHHHHHHHH T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 68654899999981599999999975288889998526889849858873248887787343578877899999999999 Q ss_pred HCCCC-CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 61789-87999975323334420576660799847888222578862787089999999987889746508898 Q gi|254781074|r 155 SNNHQ-NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIPLS 227 (227) Q Consensus 155 ~~~~~-~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~lp~~ 227 (227) +++++ ++||||||++||+++.+|+.++|+||+++|||||||+||||||+||++||+||+++|++||||+||++ T Consensus 191 ~~~~~~~vVflLWG~~Aq~~~~~i~~~~h~Il~s~HPSPLSa~rgF~g~~~Fsk~N~~L~~~g~~pIdW~lp~~ 264 (268) T 3cxm_A 191 SQHHPNRLVFLLWGGYAQQKKRLIDANRHVVLENVHPSPLSANRGWFGCRCFSACNEALQRMSHLPMHWQLPLN 264 (268) T ss_dssp HHHCSSCCEEEEESHHHHGGGGGSCTTTSEEEEECCSSHHHHTTTTTTCCHHHHHHHHHHHTTCCCCCCCCCSS T ss_pred HHCCCCCEEEEEECHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCC T ss_conf 85277887999717589998842898786699757999734467988887689999999977999872228998 No 2 >2boo_A UDG, uracil-DNA glycosylase; UNG, base excision repair, radiation resistance, DNA damage, DNA repair, glycosidase, hydrolase; 1.8A {Deinococcus radiodurans} Probab=100.00 E-value=0 Score=597.55 Aligned_cols=223 Identities=48% Similarity=0.928 Sum_probs=215.5 Q ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEEC Q ss_conf 68687338999888726589999999999999779808588769999984299861779998118887752000710003 Q gi|254781074|r 3 GVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSV 82 (227) Q Consensus 3 ~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv 82 (227) ..+|+++|+++|.+|+.++|+.+|.++|.+++.. .+|||+.++|||||++||+++||||||||||||++|||+|||||| T Consensus 20 ~~~l~~~W~~~L~~e~~~~y~~~l~~~l~~~~~~-~~i~P~~~~iF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFSv 98 (247) T 2boo_A 20 PANLPEDWQEALLPEFSAPYFHELTDFLRQERKE-YTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSV 98 (247) T ss_dssp CTTCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHH-SCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTCCSSSSSCC T ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCEEEEC T ss_conf 7888888999999885439999999999999828-933398899999986369757269996068997989527246654 Q ss_pred CCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCE Q ss_conf 479863046999999999741-8888774012432208968860101123686044543259999999999996178987 Q gi|254781074|r 83 PLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNI 161 (227) Q Consensus 83 ~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v 161 (227) +.++++|||||||||||++|+ ++..+++|||++||+||||||||+|||++|+++||+++||++||+.+|++|+++++++ T Consensus 99 ~~~~k~ppSL~NI~kel~~d~~~~~~p~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~i~~~~~~v 178 (247) T 2boo_A 99 RPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAGQANSHQGKGWEHFTDAVIKAVNAKEERV 178 (247) T ss_dssp CTTSCCCHHHHHHHHHHHHHSTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHTCSSCC T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCE T ss_conf 78898886689999999875079877887627779859889960647753899998545887999999999998647886 Q ss_pred EEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 999975323334420576660799847888222578862787089999999987889746508898 Q gi|254781074|r 162 VFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIPLS 227 (227) Q Consensus 162 VfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~lp~~ 227 (227) ||||||++||+++.+|+..+|+||+++||||||+ ||||||+||++||++|+++|++||||+||++ T Consensus 179 Vf~LWG~~A~~~~~~i~~~~h~il~~~HPSPls~-~~F~g~~~F~k~N~~L~~~g~~pIdW~lp~~ 243 (247) T 2boo_A 179 VFILWGSYARKKKKLITGKNHVVIESGHPSPLSE-QYFFGTRPFSKTNEALEKAGRGPVEWQLPAT 243 (247) T ss_dssp EEEEESHHHHGGGGGCCCTTCEEEEECCSSTTTG-GGTTTCCHHHHHHHHHHHTTCCCCCCCCCSS T ss_pred EEEEECHHHHHHHCCCCCCCCEEEECCCCCHHHC-CCCCCCCHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 9999687899865035888867996589881224-8999998789999999986999973108873 No 3 >3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A* Probab=100.00 E-value=0 Score=598.24 Aligned_cols=218 Identities=41% Similarity=0.784 Sum_probs=211.7 Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCC Q ss_conf 68733899988872658999999999999977980858876999998429986177999811888775200071000347 Q gi|254781074|r 5 KIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPL 84 (227) Q Consensus 5 ~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~ 84 (227) .++++|++.|+.+ ++|+.+|.++|.+|+.+++.|||+.++|||||+ +|+++|||||+||||||++|||+||||||+. T Consensus 20 l~~~~W~~~L~~~--~~~~~~l~~fL~~e~~~~~~i~P~~~~IF~af~-~p~~~vKVVIlGQDPYh~~gqA~GLaFSv~~ 96 (238) T 3a7n_A 20 LVERGWAAALEPV--ADQVAHMGQFLRAEIAAGRRYLPAGSNVLRAFT-FPFDNVRVLIVGQDPYPTPGHAVGLSFSVAP 96 (238) T ss_dssp TSCHHHHHHTGGG--HHHHHHHHHHHHHHHHTTCCCBSCGGGTTGGGS-SCGGGCCEEEEESSCCSSTTTCCSSTTCCCT T ss_pred HCCHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHC-CCHHHCEEEEEECCCCCCCCCCCEECCCCCC T ss_conf 3177799999998--999999999999999868978928899999852-8987917998842799999961517143489 Q ss_pred CCC-CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEE Q ss_conf 986-3046999999999741888877401243220896886010112368604454325999999999999617898799 Q gi|254781074|r 85 GIR-IPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVF 163 (227) Q Consensus 85 ~~~-~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVf 163 (227) +++ +|||||||||||+.|++...+++|||+.||+||||||||+|||++|+++||+++||++||+.+|++|+++++++|| T Consensus 97 ~~~~iPpSLrNI~Kel~~d~g~~~~~~gdL~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~fT~~vi~~l~~~~~~vVf 176 (238) T 3a7n_A 97 DVRPWPRSLANIFDEYTADLGYPLPSNGDLTPWAQRGVLLLNRVLTVRPSNPASHRGKGWEAVTECAIRALAARAAPLVA 176 (238) T ss_dssp TCSSCCHHHHHHHHHHHHHHCCCCCSSCCCHHHHHTTEEEEESSCCBCTTCTTTTTTSSHHHHHHHHHHHHHHSSSCEEE T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE T ss_conf 98778889999999999852999999988889986988997634551288877654788699999999999815799589 Q ss_pred EEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 99753233344205766607998478882225788627870899999999878897465088 Q gi|254781074|r 164 MLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIP 225 (227) Q Consensus 164 iLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~lp 225 (227) ||||++||+++.+|+..+|+||+++|||||||+||||||+||++||++|+++|++||||+|| T Consensus 177 iLWG~~Aq~~~~~I~~~~h~il~s~HPSPlSa~rgF~gs~~Fsk~N~~L~~~g~~pIdW~lp 238 (238) T 3a7n_A 177 ILWGRDASTLKPMLAAGNCVAIESPHPSPLSASRGFFGSRPFSRANELLVGMGAEPIDWRLP 238 (238) T ss_dssp EEESHHHHTTHHHHTTSSEEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCCCCC T ss_pred EEECHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC T ss_conf 98675898610345878857997889995022679989986899999999869998078897 No 4 >4eug_A UDG, UNG, protein (glycosylase); hydrolase; 1.40A {Escherichia coli B} SCOP: c.18.1.1 PDB: 5eug_A 1eug_A 2uug_A 3eug_A 2eug_A 1uug_A 1lqj_A 1lqm_A 1lqg_A 1flz_A 1eui_A 2jhq_A Probab=100.00 E-value=0 Score=596.88 Aligned_cols=218 Identities=52% Similarity=0.961 Sum_probs=212.2 Q ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCCC Q ss_conf 73389998887265899999999999997798085887699999842998617799981188877520007100034798 Q gi|254781074|r 7 HESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPLGI 86 (227) Q Consensus 7 ~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~ 86 (227) .-+|+++|.+|+.++||.+|.++|.+|+.++.+|||+.++|||||++||+++||||||||||||++|||+||||||+.++ T Consensus 4 ~~sW~~~L~~e~~~~yf~~l~~~l~~e~~~~~~i~P~~~~iF~af~~~p~~~vKVVIlGQDPY~~~~~A~GLaFsv~~~~ 83 (229) T 4eug_A 4 ELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGI 83 (229) T ss_dssp -CCHHHHHTTGGGSHHHHHHHHHHHHHHTTTSCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTTCSSSTTCCCTTS T ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHEEEEEEECCCCCCCCCCCCEEEECCCCC T ss_conf 65699999989758999999999999998599564987999998862896374899972479998887687654458998 Q ss_pred CCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 63046999999999741-88887740124322089688601011236860445432599999999999961789879999 Q gi|254781074|r 87 RIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFML 165 (227) Q Consensus 87 ~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiL 165 (227) ++|||||||||||++|+ ++..+++|||+.||+||||||||+|||++|+++||+++||++||+.+|++|+++++++|||| T Consensus 84 k~PpSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~vVf~L 163 (229) T 4eug_A 84 AIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLL 163 (229) T ss_dssp CCCHHHHHHHHHHHHHSTTCCCCSCCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEE T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEEECEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 88888999999999853898778988664375398799723388877788887787879999999999984689849999 Q ss_pred ECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 753233344205766607998478882225788627870899999999878897465088 Q gi|254781074|r 166 WGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIP 225 (227) Q Consensus 166 wG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~lp 225 (227) ||++||+++.+|+..+|+||+++|||||||+||||||+||++||++|+++|++|||| +| T Consensus 164 WG~~A~~~~~~i~~~~~~Il~s~HPSPlsa~rgF~g~~~F~k~N~~L~~~~~~pIdW-~~ 222 (229) T 4eug_A 164 WGSHAQKKGAIIDKQRHHVLKAPQPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDW-MP 222 (229) T ss_dssp ESHHHHHHTTTSCTTTSEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCC-SC T ss_pred ECHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEC-CC T ss_conf 676889877417988866997279980004789889987999999999869998327-88 No 5 >3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 4skn_E* 1okb_A Probab=100.00 E-value=0 Score=591.65 Aligned_cols=220 Identities=51% Similarity=0.905 Sum_probs=212.6 Q ss_pred CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEE Q ss_conf 98686873389998887265899999999999997798085887699999842998617799981188877520007100 Q gi|254781074|r 1 MEGVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCF 80 (227) Q Consensus 1 l~~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaF 80 (227) || .|+++|+++|.+|+.++|+.+|.++|.+++.. .+|||+.++|||||++||+++||||||||||||++|||+|||| T Consensus 1 m~--~~~~sW~~~l~~e~~~~y~~~l~~~l~~~~~~-~~i~P~~~~iF~af~~~~~~~vKVVIlGQDPY~~~~~A~GLaF 77 (223) T 3fci_A 1 ME--FFGESWKKHLSGEFGKPYFIKLMGFVAEERKH-YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCF 77 (223) T ss_dssp CC--SSCHHHHHHHGGGTTSHHHHHHHHHHHHHHHH-SCEESCGGGTTGGGTSSCGGGCCEEEEECSCCCSTTTCCSSTT T ss_pred CC--CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC-CCEECCHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCEEE T ss_conf 99--65667999999886659999999999999818-9252880899999873898684799961689999985254443 Q ss_pred ECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC Q ss_conf 03479863046999999999741-88887740124322089688601011236860445432599999999999961789 Q gi|254781074|r 81 SVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQ 159 (227) Q Consensus 81 sv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~ 159 (227) ||++++++|||||||||||++|+ ++..|.+|||++||+||||||||+|||++|+|+||+++||++||+.+|++|+++++ T Consensus 78 sv~~~~k~ppSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~~~~~SH~~~gW~~ft~~ii~~l~~~~~ 157 (223) T 3fci_A 78 SVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSN 157 (223) T ss_dssp CCCTTSCCCHHHHHHHHHHHHHSTTCCCCSSCCTHHHHTTTEEEEESSCCEETTCTTTTTTSSHHHHHHHHHHHHHHHCC T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 16799887930999999998614888889987577787499898606477667788997778889999999998741478 Q ss_pred CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC Q ss_conf 8799997532333442057666079984788822257886278708999999998788974650 Q gi|254781074|r 160 NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQ 223 (227) Q Consensus 160 ~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~ 223 (227) ++||||||++||++++.|+..+|+||+++|||||||+|||+||+||++||++|+++|++||||. T Consensus 158 ~vVfiLWG~~A~~~~~~i~~~~h~il~~~HPSPlsa~~gF~~s~~F~k~N~~L~~~~~~pIdW~ 221 (223) T 3fci_A 158 GLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWK 221 (223) T ss_dssp SCEEEEESHHHHHHTTTCCTTTSEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCTT T ss_pred CEEEEEECHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC T ss_conf 8699995668999885279878759970799830116798899879999999998698895880 No 6 >1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} SCOP: c.18.1.1 PDB: 1lau_E 1udh_A 1udi_E 2c53_A* 2c56_A* Probab=100.00 E-value=0 Score=589.50 Aligned_cols=219 Identities=39% Similarity=0.666 Sum_probs=208.3 Q ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEEC Q ss_conf 68687338999888726589999999999999779808588769999984299861779998118887752000710003 Q gi|254781074|r 3 GVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSV 82 (227) Q Consensus 3 ~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv 82 (227) .+.|+++|+++|.+|+.++|+.+|.++|.+++. +.+|||+.++|||||++||+++||||||||||||++|||+|||||| T Consensus 25 ~~~i~~sW~~~L~~e~~k~y~~~l~~~l~~~~~-~~~i~P~~~~iF~af~~~~~~~vKVVIlGQDPY~~~~~A~GLaFsv 103 (244) T 1udg_A 25 VFLIDDAWRPLMEPELANPLTAHLLAEYNRRCQ-TEEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAFSV 103 (244) T ss_dssp HHTCCGGGHHHHHHHHTSHHHHHHHHHHHHHHH-HSCEESCTTTTTTHHHHSCGGGCCEEEEECSCCCSTTTCSSSSSCC T ss_pred HCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCEEECCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCEEECC T ss_conf 668986899999999754999999999999981-9958897299999884798668679998517999998607655136 Q ss_pred CCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCE Q ss_conf 479863046999999999741-8888774012432208968860101123686044543259999999999996178987 Q gi|254781074|r 83 PLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNI 161 (227) Q Consensus 83 ~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v 161 (227) +.++++|||||||||||++|+ ++..+.+|||++||+||||||||+|||++|+++||+++||++||+.+|++|+++++++ T Consensus 104 ~~~~~~ppSLrNI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~i 183 (244) T 1udg_A 104 RANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGL 183 (244) T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCCCSCCCCHHHHHTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSC T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCE T ss_conf 89999985699999999864378888887777778649899970658861577888788987999999999998368986 Q ss_pred EEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC Q ss_conf 999975323334420576660799847888222578862787089999999987889746508 Q gi|254781074|r 162 VFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQI 224 (227) Q Consensus 162 VfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~l 224 (227) ||||||++||++.. ++..+|+||+++||||||+ +||+||+||++||++|+++|++||||+| T Consensus 184 VfiLWG~~Aq~~~~-~~~~~h~Il~~~HPSPls~-~gF~gs~~F~k~N~~L~~~~~~pIdW~l 244 (244) T 1udg_A 184 VFMLWGTHAQNAIR-PDPRVHCVLKFSHPSPLSK-VPFGTCQHFLVANRYLETRSISPIDWSV 244 (244) T ss_dssp EEEEESHHHHHHCC-CCTTTSEEEEECCSSTTSS-SCGGGCCHHHHHHHHHHTTTCCCCCCCC T ss_pred EEEEECHHHHHHCC-CCCCCCEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCCC T ss_conf 99996789885342-4788886998689882113-6899997689999999987999903739 No 7 >2j8x_A Uracil-DNA glycosylase; hydrolase/inhibitor, hydrolase/inhibitor complex, EBV, DNA repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1 Probab=100.00 E-value=0 Score=582.09 Aligned_cols=221 Identities=41% Similarity=0.790 Sum_probs=211.1 Q ss_pred CCCCCCHHHHHHHH-HHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEE Q ss_conf 86868733899988-87265899999999999997798085887699999842998617799981188877520007100 Q gi|254781074|r 2 EGVKIHESWKSLLE-NHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCF 80 (227) Q Consensus 2 ~~l~i~~sW~~~L~-~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaF 80 (227) |++.|+++|+++|+ .++.+.++.++.+++.+++ ++.+|||+.++|||||++||+++||||||||||||+ |||+|||| T Consensus 2 e~~~l~~~W~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~iyP~~~~iF~af~~~~~~~vKVVIlGQDPY~~-~~A~GLaF 79 (231) T 2j8x_A 2 ENLLLPDLWLDFLQLSPIFQRKLAAVIACVRRLR-TQATVYPEEDMCMAWARFCDPSDIKVVILGQDPYHG-GQANGLAF 79 (231) T ss_dssp CCCCCCHHHHHHHTCCHHHHHHHHHHHHHHHHHH-TTSCEESCTTTTTGGGSSSCGGGCCEEEEECSCCSS-SCCCSSSS T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH-CCCEECCCHHHHHHHHHCCCHHHEEEEEEECCCCCC-CCEEEEEE T ss_conf 8774285899988049867999999999999986-498147988999999872888890799995689988-84201532 Q ss_pred ECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC Q ss_conf 03479863046999999999741-88887740124322089688601011236860445432599999999999961789 Q gi|254781074|r 81 SVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQ 159 (227) Q Consensus 81 sv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~ 159 (227) ||+.++++|||||||||||+.|+ ++..+.+|||+.||+||||||||+|||++|+++||+++||+.||+.+|++|+++++ T Consensus 80 Sv~~~~~~ppSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~vi~~l~~~~~ 159 (231) T 2j8x_A 80 SVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERLK 159 (231) T ss_dssp CCCTTSCCCHHHHHHHHHHHHHCTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCS T ss_pred ECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 13589979934999999998645878889989878887487688714389748998886679816469999999971667 Q ss_pred CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHH-------HCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC Q ss_conf 8799997532333442057666079984788822-------2578862787089999999987889746508 Q gi|254781074|r 160 NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPL-------SASHGFFGCRHFSKANRYLQEHGKTTVNWQI 224 (227) Q Consensus 160 ~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPl-------s~~~gF~~~~~F~~~N~~L~~~~~~~IdW~l 224 (227) ++||||||++||+++.+|+..+|+||+++||||| ||+||||||+||++||++|+++|++||||+| T Consensus 160 ~vVfiLWG~~A~~~~~~i~~~~h~Il~s~HPSPl~~~~~~~sa~~gF~g~~~F~~~N~~L~~~~~~pIdW~l 231 (231) T 2j8x_A 160 ACVFMLWGAKAGDKASLINSKKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNFLREKGLGEIDWRL 231 (231) T ss_dssp SCEEEEESHHHHGGGGGSCTTTSEEEEECCSSGGGGGCCSSCSSCCSTTCCHHHHHHHHHHHTTCCCCCCCC T ss_pred CEEEEEECHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC T ss_conf 859999587899753035887877997579983013666653258988997699999999987999904719 No 8 >2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A Probab=100.00 E-value=0 Score=476.48 Aligned_cols=203 Identities=20% Similarity=0.359 Sum_probs=181.8 Q ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEE Q ss_conf 86868733899988872658999999999999977980858876999998429986177999811888775200071000 Q gi|254781074|r 2 EGVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFS 81 (227) Q Consensus 2 ~~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFs 81 (227) ..+++|++|+++|++. ++++.+|.+++.+ ..++|++++|||||+ +|+++|||||+|||||| ++|+||||| T Consensus 11 ~~~~~h~sW~~~l~~~--~~~~~~i~~~l~~-----e~i~P~~~~iF~af~-~~~~~vKVVIlGQDPYp--~~a~GLaFS 80 (218) T 2owr_A 11 YTITYHNDWEPVMSQL--VEFYNEVASWLLR-----DETSPIPDKFFIQLK-QPLRNKRVCVCGIDPYP--KDGTGVPFE 80 (218) T ss_dssp CEEEEEGGGHHHHHHH--HHHHHTTHHHHTT-----SCEESCGGGTTGGGG-SCSTTCCEEEEESSCCS--SCCCSSTTC T ss_pred CCCCCCCHHHHHHHHH--HHHHHHHHHHHHC-----CCCCCCHHHHHHHHC-CCHHHCEEEEEECCCCC--CCCCCCCCC T ss_conf 5560182799999999--9999999999964-----877989899999972-99889379998457999--867672246 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCE Q ss_conf 34798630469999999997418888774012432208968860101123686044543259999999999996178987 Q gi|254781074|r 82 VPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNI 161 (227) Q Consensus 82 v~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v 161 (227) |+. ++|||||||||||++|++...+.++++ ||+||||||||+|||++|+|+||+ .||++||+.+|+.|++ +.++ T Consensus 81 v~~--~~ppSL~NI~kel~~~~~~~~~~~~~~--wa~QGVLLLNt~LTv~~g~~~sH~-~~W~~ft~~ii~~l~~-~~~v 154 (218) T 2owr_A 81 SPN--FTKKSIKEIASSISRLTGVIDYKGYNL--NIIDGVIPWNYYLSCKLGETKSHA-IYWDKISKLLLQHITK-HVSV 154 (218) T ss_dssp CTT--SCCHHHHHHHHHHHHHHCCCCCSEECG--GGSTTEEEEESSSCEETTCTTTTH-HHHHHHHHHHHHHHTT-TCSE T ss_pred CCC--CCCHHHHHHHHHHHHCCCCCCCCCCCH--HHCCCEEEEECEEEEECCCCCCCC-CCHHHHHHHHHHHHHC-CCCE T ss_conf 789--877699999999886229888898751--321988987555887569878777-5849999999999973-6872 Q ss_pred EEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC Q ss_conf 99997532333442057666079984788822257886278708999999998788974650 Q gi|254781074|r 162 VFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQ 223 (227) Q Consensus 162 VfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~ 223 (227) ||+|||++|++++..|+. +|.+++++|||| ++|||+||+||++||++|+++|++||||+ T Consensus 155 v~ll~g~~a~~~~~~i~~-~~~~i~~~HPss--~~rgF~g~~~F~k~N~~L~~~g~~~IdW~ 213 (218) T 2owr_A 155 LYCLGKTDFSNIRAKLES-PVTTIVGYHPAA--RDRQFEKDRSFEIINVLLELDNKAPINWA 213 (218) T ss_dssp EEEECHHHHHHHHHHCSC-CCEEEEECCTTC------CCCCCCCHHHHHHHHTTTSCCCCGG T ss_pred EEEEECHHHHHHHHCCCC-CCEEEECCCCCC--CCCCCCCCCHHHHHHHHHHHCCCCCCCCC T ss_conf 899840898867634788-958997988744--47798999718999999998699981378 No 9 >1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A* 1oe6_A* Probab=96.72 E-value=0.021 Score=34.29 Aligned_cols=148 Identities=17% Similarity=0.150 Sum_probs=83.3 Q ss_pred CCHHHCEEEEEECCCCCCCCCCCCCEEECCC-------------------------CCC---CHHHHHHHHHHHHHHCCC Q ss_conf 9986177999811888775200071000347-------------------------986---304699999999974188 Q gi|254781074|r 54 TPFNKVKVVILGQDPYHNYGQAHGLCFSVPL-------------------------GIR---IPPSLVNVYKELQEDVNF 105 (227) Q Consensus 54 ~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~-------------------------~~~---~p~SLrNI~Kel~~d~~~ 105 (227) +. ...||++||++|=|.-+--+|+.|.-.. +.. --.|=+-|...+++-++. T Consensus 50 ~~-~~~~vl~lGmNPGp~Gm~qTGVPFgd~~~vr~~l~i~~~v~~P~~~HPKRpi~G~~c~r~EvSg~rlW~l~~~~~g~ 128 (247) T 1oe4_A 50 CK-SKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLCGQ 128 (247) T ss_dssp CS-SCCSEEEEESSCCTTTHHHHSSTTCCHHHHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHHSS T ss_pred CC-CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 18-99988998328987778641868588799987851667467885447677654657665565398899999988399 Q ss_pred CCCCCCHHHHHHCCCEEEECCH-HCC--CCCCCH-------H-HHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH Q ss_conf 8877401243220896886010-112--368604-------4-5432599999999999961789879999753233344 Q gi|254781074|r 106 IPPTHGFLEHWGHEGVLLLNAV-LTV--EEGRAA-------S-HRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQ 174 (227) Q Consensus 106 ~~~~~g~L~~Wa~QGVLLLNt~-LTv--~~g~~~-------S-H~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~ 174 (227) |.. .-+-+++.|.+ |.. +.|+.- + -..+ ++.-.+.+.+.|..-+.. +.+--|++|++.. T Consensus 129 --pe~------ff~~~fv~N~CPL~f~~~~GkN~TP~~l~~~e~~~l-~~~Cd~~L~~~v~~L~p~-~VVgVG~~Ae~ra 198 (247) T 1oe4_A 129 --PET------FFKHCFVHNHCPLIFMNHSGKNLTPTDLPKAQRDTL-LEICDEALCQAVRVLGVK-LVIGVGRFSEQRA 198 (247) T ss_dssp --HHH------HHTTEEEEESCCCEEECTTCCEECGGGSCHHHHHHH-HHHHHHHHHHHHHHHTCS-EEEEESHHHHHHH T ss_pred --HHH------HHHHHEEEECCCCEECCCCCCCCCCHHCCHHHHHHH-HHHHHHHHHHHHHHCCCC-EEEEECHHHHHHH T ss_conf --989------865342572377333188998688000588899999-999999999999861972-8999778999999 Q ss_pred HCC-C--CCCCEEEEECCCCHHH--CCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 205-7--6660799847888222--57886278708999999998788 Q gi|254781074|r 175 DVL-D--HKRHLVLKAAHPSPLS--ASHGFFGCRHFSKANRYLQEHGK 217 (227) Q Consensus 175 ~~i-~--~~~~~il~~~HPSPls--~~~gF~~~~~F~~~N~~L~~~~~ 217 (227) +.. . ...-.|..-.||||.| |+||+- .++...|+++|. T Consensus 199 ~~al~~~g~~V~v~~i~HPSPasp~aN~~W~-----~~a~~~l~~~g~ 241 (247) T 1oe4_A 199 RKALMAEGIDVTVKGIMHPSPRNPQANKGWE-----GIVRGQLLELGV 241 (247) T ss_dssp HHHHHHTTCSCEEEEECCCCTTCGGGTTTHH-----HHHHHHHHHHTC T ss_pred HHHHCCCCCCCEEEECCCCCCCCCHHCCCCH-----HHHHHHHHHCCC T ss_conf 9986046998558645799998800005848-----999999998774 No 10 >1mug_A Protein (G:T/U specific DNA glycosylase); hydrolase; 1.80A {Escherichia coli} SCOP: c.18.1.2 PDB: 1mtl_A 1mwi_A* 1mwj_A Probab=95.74 E-value=0.12 Score=29.75 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=67.9 Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHCCCEEEECCHHCCCCCCC Q ss_conf 61779998118887752000710003479863046999999999741888877-40124322089688601011236860 Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPT-HGFLEHWGHEGVLLLNAVLTVEEGRA 135 (227) Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~-~g~L~~Wa~QGVLLLNt~LTv~~g~~ 135 (227) .+.||+|+|+-|=.. ...+|..|+-+.+ . ..+.|........+. --+...-.+.||-+.|.+-.+..... T Consensus 8 p~~~vlivG~~Pg~~-s~~~g~~y~~p~n-~-------fw~~l~~~~~~~~~~~~~~~~~l~~~~i~ltd~v~~~~~~~~ 78 (168) T 1mug_A 8 PGLRVVFCGINPGLS-SAGTGFPFAHPAN-R-------FWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQAN 78 (168) T ss_dssp TTCSEEEEESSCCHH-HHHHSSTTCSTTC-C-------HHHHHHHTTSSSSCCCGGGGGGGGGGTEEEEESCCCCCSSGG T ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCCHH-H-------HHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCC T ss_conf 999889984798977-8855998679557-9-------999999826877788877764123366798513245577889 Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH-HHCCCC---------CCCEEEEECCCCHHH Q ss_conf 44543259999999999996178987999975323334-420576---------660799847888222 Q gi|254781074|r 136 ASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKK-QDVLDH---------KRHLVLKAAHPSPLS 194 (227) Q Consensus 136 ~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~-~~~i~~---------~~~~il~~~HPSPls 194 (227) .....- .+.-...+.+.|...++.+| ++.|+.|.+. ...... ....++..+||||+. T Consensus 79 ~~~~~E-~~~~~~~L~~~l~~~~P~iI-~~~G~~a~~~~~~~~~~~~g~q~~~~~~~~~~vlPspS~~~ 145 (168) T 1mug_A 79 EVSKQE-LHAGGRKLIEKIEDYQPQAL-AILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLS 145 (168) T ss_dssp GSCHHH-HHHHHHHHHHHHHHHCCSEE-EEECHHHHHHHHTCCSCCSEEEEEEETTEEEEEECCCSTTS T ss_pred CCCHHH-HHHHHHHHHHHHHHHCCCHH-HHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCHHH T ss_conf 973899-98721889999998391801-42699999998477877655324567997779944899677 No 11 >1wyw_A TDG, G/T mismatch-specific thymine DNA glycosylase; hydrolase; 2.10A {Homo sapiens} SCOP: c.18.1.2 PDB: 2d07_A 2rba_A* Probab=95.73 E-value=0.12 Score=29.72 Aligned_cols=146 Identities=14% Similarity=0.069 Sum_probs=80.3 Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCC---CCCCHHHHHHCCCEEEECCHHCCCCC Q ss_conf 617799981188877520007100034798630469999999997418888---77401243220896886010112368 Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIP---PTHGFLEHWGHEGVLLLNAVLTVEEG 133 (227) Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~---~~~g~L~~Wa~QGVLLLNt~LTv~~g 133 (227) .+.||+|||+-|=.. ..+.|--|+=+.+. +.+.|..- +... ...-+..--...||-+.|.+--+..+ T Consensus 21 p~~~vLivG~~PG~~-S~~~G~~ya~p~N~--------FW~~L~~~-g~~~~~~~~~e~~~~l~~~gigltdvv~r~t~~ 90 (230) T 1wyw_A 21 FNLDIVIIGINPGLM-AAYKGHHYPGPGNH--------FWKCLFMS-GLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPG 90 (230) T ss_dssp SSCSEEEEESSCCHH-HHHHTSSSCSSSBC--------HHHHHHHT-TSSSSCCCGGGGGGHHHHHSEEEEESCCSCCSC T ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCCCHH--------HHHHHHHH-CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 999789984288966-78438888786134--------99999997-488866787787666653144302122156877 Q ss_pred C--CHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHH-HHHC-----------------CCCCCCEEEEECCCCHH Q ss_conf 6--04454325999999999999617898799997532333-4420-----------------57666079984788822 Q gi|254781074|r 134 R--AASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQK-KQDV-----------------LDHKRHLVLKAAHPSPL 193 (227) Q Consensus 134 ~--~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~-~~~~-----------------i~~~~~~il~~~HPSPl 193 (227) . +.+..-.-+.++....|+.+ ++. +.++-|+.|.. +... +......++..+||||+ T Consensus 91 ~s~ls~~E~~~~~~~L~~~I~~~---~P~-~iv~~G~~A~~~f~~~~~g~~~~~~~~G~q~~~~~~~~~~v~vlPS~S~~ 166 (230) T 1wyw_A 91 SKDLSSKEFREGGRILVQKLQKY---QPR-IAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSAR 166 (230) T ss_dssp GGGCCHHHHHHHHHHHHHHHHHH---CCS-EEEEESHHHHHHHHHHHTCCCCSSCCSEECSCCSTTSCCEEEEECCCBTT T ss_pred CCCCCHHHHHHHHHHHHHHHHHH---CCC-EEEEECHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEECCCCCHH T ss_conf 78987789987589999999983---996-89870789999998642167753311213554568878569985898188 Q ss_pred HCCCCCCCC--CHHHHHHHHHHHCC Q ss_conf 257886278--70899999999878 Q gi|254781074|r 194 SASHGFFGC--RHFSKANRYLQEHG 216 (227) Q Consensus 194 s~~~gF~~~--~~F~~~N~~L~~~~ 216 (227) .|+-.+..- ..|...-+++.+.+ T Consensus 167 na~~~r~~~k~~~~~~L~~~~d~l~ 191 (230) T 1wyw_A 167 CAQFPRAQDKVHYYIKLKDLRDQLK 191 (230) T ss_dssp CSSCCSGGGTHHHHHHHHHHHHHHT T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 6087748999999999999999987 No 12 >1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A Probab=91.18 E-value=0.56 Score=25.51 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=66.3 Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCC-CC-C Q ss_conf 617799981188877520007100034798630469999999997418888774012432208968860101123-68-6 Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVE-EG-R 134 (227) Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~-~g-~ 134 (227) .+-||+|+|+.|-.. +..+|..|+-+.+ .-|+++..+ .+.. .+.|.+.|.+--.. .+ . T Consensus 49 ~~a~imiVgeaPg~~-e~~~g~pf~g~sG----~ll~~~l~~----~gl~-----------~~~vyitn~vkc~pp~n~~ 108 (204) T 1vk2_A 49 LDTRIVFVGEGPGEE-EDKTGRPFVGRAG----MLLTELLRE----SGIR-----------REDVYICNVVKCRPPNNRT 108 (204) T ss_dssp TTCSEEEEESCCCHH-HHHHTCSSCSHHH----HHHHHHHHH----TTCC-----------GGGSEEEESCSSCCGGGCC T ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCCHH----HHHHHHHHH----HCCC-----------CCCEEEEEEEEECCCCCCC T ss_conf 999999998997455-6052985456538----789988776----2457-----------0235797678760886789 Q ss_pred CH-HHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC-----C--------C-CCCCEEEEECCCCHHHCCC Q ss_conf 04-4543259999999999996178987999975323334420-----5--------7-6660799847888222578 Q gi|254781074|r 135 AA-SHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDV-----L--------D-HKRHLVLKAAHPSPLSASH 197 (227) Q Consensus 135 ~~-SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~-----i--------~-~~~~~il~~~HPSPls~~~ 197 (227) +. ....- ..++...-|+.+. +-|.++.|+.|.+..-. + + .....++-+.|||++-.+. T Consensus 109 ~~~~e~~~-c~~~l~~eI~li~----PkiIv~LG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~~pt~HPs~llrnp 181 (204) T 1vk2_A 109 PTPEEQAA-CGHFLLAQIEIIN----PDVIVALGATALSFFVDGKKVSITKVRGNPIDWLGGKKVIPTFHPSYLLRNR 181 (204) T ss_dssp CCHHHHHH-HHHHHHHHHHHHC----CSEEEEESHHHHHHTTTTCCCCHHHHTTCCEECGGGCEEEEECCHHHHHHCC T ss_pred CCHHHHHH-CCCHHHHHHHCCC----CCEEEEECHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHCC T ss_conf 99899988-4746777763148----6479715899999997267766420369558867998799981965987793 No 13 >3ikb_A Uncharacterized conserved protein; APC63946, streptococcus mutans UA159, structural genomics, PSI-2, protein structure initiative; HET: FLC; 1.67A {Streptococcus mutans} Probab=89.49 E-value=0.62 Score=25.22 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=63.3 Q ss_pred CCHHHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCCC Q ss_conf 99861779998118887752000710003479863046999999999741888877401243220896886010112368 Q gi|254781074|r 54 TPFNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEEG 133 (227) Q Consensus 54 ~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g 133 (227) .+ .+-|++|+||.|--. ...+|..|.-..| +.+++.| |... .. -....-|...|++.-.--+ T Consensus 34 g~-~~A~imiIGeAPG~~-ed~~G~PF~g~sG-------~~L~~~l----gl~r-~~----~~~~~~v~i~n~v~c~Pp~ 95 (198) T 3ikb_A 34 AP-KTARINIVGQAPGIK-AQESRLYWNDKSG-------DRLREWM----GVDY-DT----FYHSGYFAVIPMDFYYPGK 95 (198) T ss_dssp CC-TTCCEEEECSCCCHH-HHHHCCSSCSHHH-------HHHHHHH----TCCH-HH----HHHSSCEEECCSCSSCCCB T ss_pred CC-CCCCEEEEECCCCHH-HHHCCCCCCCCHH-------HHHHHHH----CCCH-HH----CCCCCCEEEEECCCCCCCC T ss_conf 69-999889986898466-5215998878258-------8999995----9755-33----4655788998556678999 Q ss_pred -CCH-----HH-HHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC----CC------C-CC--CEEEEECCCCHH Q ss_conf -604-----45-43259999999999996178987999975323334420----57------6-66--079984788822 Q gi|254781074|r 134 -RAA-----SH-RGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDV----LD------H-KR--HLVLKAAHPSPL 193 (227) Q Consensus 134 -~~~-----SH-~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~----i~------~-~~--~~il~~~HPSPl 193 (227) +.+ .. ..+ |.++... .| .++-|.++.|+.|.+..-- +. . .. -.++-..||||+ T Consensus 96 nr~~~~~p~~~~~~~-~~~~l~~---~l---~~pklIv~LG~~A~~~~L~~~~~~~~~~~~~~~~~~~~~~~pl~HPS~r 168 (198) T 3ikb_A 96 GKSGDLPPRKGFAQK-WHQPILD---LL---PDIQLTILIGNYAQKYYLHQKSSVKLTDTVAHYKKYLPDYFPLVHPSPR 168 (198) T ss_dssp CSSSBCCCCTTHHHH-HHHHHHT---TC---TTCCEEEEESHHHHHHHTTCCTTSCHHHHHHTGGGGTTTEEEECCCCGG T ss_pred CCCCCCCCCHHHHHH-HHHHHHH---HC---CCCEEEEEECHHHHHHHHCCCCCCCHHHHHHCCHHHCCCEEEECCCCCC T ss_conf 989999971999999-9999998---66---8970999878999998828677887043421115528897885489846 Q ss_pred H Q ss_conf 2 Q gi|254781074|r 194 S 194 (227) Q Consensus 194 s 194 (227) + T Consensus 169 N 169 (198) T 3ikb_A 169 N 169 (198) T ss_dssp G T ss_pred C T ss_conf 6 No 14 >1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} SCOP: c.18.1.2 PDB: 1ui1_A Probab=87.64 E-value=0.84 Score=24.41 Aligned_cols=136 Identities=18% Similarity=0.144 Sum_probs=74.7 Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCC--CCC Q ss_conf 617799981188877520007100034798630469999999997418888774012432208968860101123--686 Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVE--EGR 134 (227) Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~--~g~ 134 (227) .+.||+|+||-|-.. +..+|..|+-..|. =|++++.++ |+. ++.|-+.|.+--.. ... T Consensus 32 ~~a~imiVg~aPg~~-e~~~g~pf~G~aG~----lL~~~L~~~----gl~-----------~~~vyitn~vkc~p~~~~~ 91 (205) T 1ui0_A 32 PDAKLMIVGEGPGEE-EDKTGRPFVGKAGQ----LLNRILEAA----GIP-----------REEVYITNIVKCRPPQNRA 91 (205) T ss_dssp TTCSEEEEESCCCHH-HHHHSCSSCSHHHH----HHHHHHHHH----TCC-----------GGGSEEEESCSSCCGGGCC T ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCCHHH----HHHHHHHHC----CCC-----------HHHEEEECCEEECCCCCCC T ss_conf 999999995887607-76208864675788----999999983----999-----------8998866004013776789 Q ss_pred CHHH-HHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC----C--------CCCCCEEEEECCCCHHHCCCCCCC Q ss_conf 0445-43259999999999996178987999975323334420----5--------766607998478882225788627 Q gi|254781074|r 135 AASH-RGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDV----L--------DHKRHLVLKAAHPSPLSASHGFFG 201 (227) Q Consensus 135 ~~SH-~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~----i--------~~~~~~il~~~HPSPls~~~gF~~ 201 (227) +... ...-+++|....|+.+ ++-|.++.|+.|.+..-. + +...-.++-+.|||.|-.+...-. T Consensus 92 ~~~~ei~~C~~p~L~~ei~li----~Pkiii~lG~~a~~~~l~~~~~~~~~rG~~~~~~~~~~~~tyHPs~LlrnP~~~~ 167 (205) T 1ui0_A 92 PLPDEAKICTDKWLLKQIELI----APQIIVPLGAVAAEFFLGEKVSITKVRGKWYEWHGIKVFPMFHPAYLLRNPSRAP 167 (205) T ss_dssp CCHHHHHHHHHHTHHHHHHHH----CCSEEEEBSHHHHHHHHTSCCCHHHHTTCCEEETTEEECCBCCHHHHHHSCCCST T ss_pred CCHHHHHHHHHHHHHHHHHHC----CCCEEEEHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCHHHHHCCCCCC T ss_conf 986999999999999999854----8836733089999998612544122247138738966999859768865935343 Q ss_pred C-------CHHHHHHHHHHHCC Q ss_conf 8-------70899999999878 Q gi|254781074|r 202 C-------RHFSKANRYLQEHG 216 (227) Q Consensus 202 ~-------~~F~~~N~~L~~~~ 216 (227) . ..|.++=+.|.+.- T Consensus 168 ~~~K~~~w~Dl~~lk~~L~~l~ 189 (205) T 1ui0_A 168 GSPKHLTWLDIQEVKRALDALP 189 (205) T ss_dssp TCHHHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHHHHCCC T ss_conf 0468899999999999998279 No 15 >2c2q_A G/U mismatch-specific DNA glycosylase; radiation resistance, DNA repair enzymes, uracil-DNA glycosylase, MUG, hydrolase; 1.7A {Deinococcus radiodurans} PDB: 2c2p_A Probab=86.57 E-value=1.8 Score=22.44 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=66.9 Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC--HHHHHHCCCEEEECCHHCCCCCC Q ss_conf 6177999811888775200071000347986304699999999974188887740--12432208968860101123686 Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHG--FLEHWGHEGVLLLNAVLTVEEGR 134 (227) Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g--~L~~Wa~QGVLLLNt~LTv~~g~ 134 (227) .+.+|+|+|+-|=.. ...+|.-|+-+ +.. ..+.|.. .|....... +.......|+-+.|.+-....+. T Consensus 24 p~~rilivG~aPG~~-s~~~G~~f~~p-~n~-------fw~~L~~-~Gl~~~~~~~~~~~~l~~~~i~~~~~v~~~~~~~ 93 (199) T 2c2q_A 24 PGLTLVLVGTAPSGI-SARARAYYANP-ENK-------FWRTLHA-VGLTPRQLVPQEYATLPQYGLGLTDVAKRHSGVA 93 (199) T ss_dssp TTCSEEEEESCCCHH-HHHHTSSSCST-TCC-------HHHHHHH-TTSSSSCCCGGGGGGGGGGTEEEEESCCSCCSCG T ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCH-HHH-------HHHHHHH-HCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCC T ss_conf 999789982697988-99669853680-788-------9999999-1898666788887676640542225668889888 Q ss_pred CH-HHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH-CC--------------CCCCCEEEEECCCCHHHCCC Q ss_conf 04-454325999999999999617898799997532333442-05--------------76660799847888222578 Q gi|254781074|r 135 AA-SHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQD-VL--------------DHKRHLVLKAAHPSPLSASH 197 (227) Q Consensus 135 ~~-SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~-~i--------------~~~~~~il~~~HPSPls~~~ 197 (227) .. +.... ....+.+.|... ++.+.++.|+.|.+..- .- ......++-.+||||+.+.. T Consensus 94 ~~~~~~e~----~~~~L~~~i~~~-~PrvIv~lG~~a~~~~l~~~~~~~~~g~~~~~~~~~~~~~v~~lphpS~l~~~~ 167 (199) T 2c2q_A 94 AALPGEAW----RPDELRRKVEHY-RPRIVAFTSKRGASETLGVPTGKLPYGPQPQPLDWPAETELWVLPSTSPLGHNH 167 (199) T ss_dssp GGSCGGGC----CHHHHHHHHHHH-CCSEEEESSHHHHHHHHCSCGGGCCSEECCCCSSCCTTCEEEECCCCSGGGTTT T ss_pred CCCCHHHH----HHHHHHHHHHHC-CCCEEEECCHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEECCCCHHHHCC T ss_conf 87556565----118799999867-986999849899999853455423324543001345772079856975887173 No 16 >2l3f_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} Probab=78.14 E-value=0.45 Score=26.09 Aligned_cols=129 Identities=11% Similarity=0.076 Sum_probs=71.6 Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC---CCHHHHHHCCCEEEECCHHCCC-C Q ss_conf 61779998118887752000710003479863046999999999741888877---4012432208968860101123-6 Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPT---HGFLEHWGHEGVLLLNAVLTVE-E 132 (227) Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~---~g~L~~Wa~QGVLLLNt~LTv~-~ 132 (227) .+.||+|+|--|=.. -.+.|.-|+-+.+. .-+-|.+-++...+. .-++..-.+.||=|.+.+-.+. + T Consensus 12 ~~~~VLilGs~Pg~~-S~~~g~yYa~p~N~--------FW~il~~~~~~~~~~~~~~~~~~~L~~~gIgl~Dvv~~~~r~ 82 (166) T 2l3f_A 12 ENTEILILGSLPSDE-SIRKQQYYGNPGND--------FWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSRE 82 (166) T ss_dssp SSCSEEEEESSCCHH-HHHHTSGGGSTTCT--------HHHHHHHHHTSCSTTSCHHHHHHHHHHTTEEEEESEEEECCC T ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCCCCC--------HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHCCC T ss_conf 998689985288977-88668875799884--------177899873898755571889999998595301001242106 Q ss_pred CCCHHHHHCCHHHHHHHHHHHHHCCCCCE-EEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCC Q ss_conf 86044543259999999999996178987-9999753233344205766607998478882225788 Q gi|254781074|r 133 GRAASHRGRGWEQFTDSVIDLISNNHQNI-VFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHG 198 (227) Q Consensus 133 g~~~SH~~~gW~~ft~~ii~~l~~~~~~v-VfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~g 198 (227) |.. .+.+ .+... +.++.|.+..+.+ +.++=|+.|.+.........-.++.-+-+||+.++.. T Consensus 83 gs~--d~~i-~~~~~-nd~~~l~~~~p~i~~i~fnG~~A~~~~~~~~~~~~~~~vLPSTSpana~~~ 145 (166) T 2l3f_A 83 GSQ--DSKI-GDEEI-NDFSGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRRFS 145 (166) T ss_dssp SSS--SCCC-CCCEE-CCCTTHHHHCSSCCEEEEESHHHHTTHHHHGGGTCEEEEECCCSHHHHTTC T ss_pred CCC--HHHH-HHHHH-HHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCCCCEEEECCCCCHHHHCCC T ss_conf 767--7787-77666-689999985888119997899998565012578973898589876656629 No 17 >2d3y_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, structural genomics, NPPSFA; HET: DU; 1.55A {Thermus thermophilus HB8} PDB: 2ddg_A* 2dem_A* 2dp6_A* Probab=65.97 E-value=7.1 Score=18.67 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=63.3 Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHCCCEEEECCHHCC-CCC Q ss_conf 617799981188877520007100034798630469999999997418888774012--43220896886010112-368 Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFL--EHWGHEGVLLLNAVLTV-EEG 133 (227) Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L--~~Wa~QGVLLLNt~LTv-~~g 133 (227) .+-+++|+|+-|--..+...|--|-+. +|-....+.|.. .+... ....+ .......|..-|.+--- -.+ T Consensus 49 ~~A~imiIGeaPg~~ed~~~g~pf~g~------~sG~lL~~~l~~-~gl~~-~~~~~~~~~~~~~~~~~tn~vk~rpP~n 120 (219) T 2d3y_A 49 PEARILLFGLAPGAHGSNRTGRPFTGD------ASGAFLYPLLHE-AGLSS-KPESLPGDDLRLYGVYLTAAVRCAPPKN 120 (219) T ss_dssp TTCSEEEEESCCCTTTHHHHSSTTTTS------HHHHHHHHHHHH-TTCBS-CSCCCTTSCCCBSSEEEEESCCSCCGGG T ss_pred CCCCEEEEECCCCCCCCCCCCCCCEEE------CHHHHHHHHHHH-HHCCC-CCCCCCCCCCCEEEEEECCCCCCCCCCC T ss_conf 999989996898732023268984332------449899999999-86446-4201013323210147616513359888 Q ss_pred CCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC----CCC-------------CCCEEEEECCCCHHHCC Q ss_conf 6044543259999999999996178987999975323334420----576-------------66079984788822257 Q gi|254781074|r 134 RAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDV----LDH-------------KRHLVLKAAHPSPLSAS 196 (227) Q Consensus 134 ~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~----i~~-------------~~~~il~~~HPSPls~~ 196 (227) .+.... -...-..+++.+..-.++.|.++.|+.|-+..-- ... ..-.++-+-|||++... T Consensus 121 rp~~~e---~~~~~~~ll~e~~~lv~PkvIV~LG~~A~kall~~~~~~~~~~~~~~~~~~~~~~g~~v~ptyHPS~llr~ 197 (219) T 2d3y_A 121 KPTPEE---LRACARWTEVELGLLPEVRVYVALGRIALEALLAHFGLRKSAHPFRHGAHYPLPGGRHLLASYHVSRQNTQ 197 (219) T ss_dssp CCCHHH---HHHHHHHHHHHHHTCTTCCEEEEESHHHHHHHHHHHTCCTTTSCCCTTCEEEETTTEEEEEECCCSHHHHH T ss_pred CCCHHH---HHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCC T ss_conf 998599---99852899999998618621320109999999876077644443324526737999189999688754559 No 18 >2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A Probab=63.54 E-value=1.3 Score=23.30 Aligned_cols=34 Identities=21% Similarity=0.504 Sum_probs=27.1 Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH Q ss_conf 432599999999999961789879999753233344 Q gi|254781074|r 139 RGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQ 174 (227) Q Consensus 139 ~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~ 174 (227) ..+ |+++++ +++...+++..++++|||.+|.-.. T Consensus 118 v~y-w~eL~~-ii~wa~~~~~~~LgiCwGaQa~l~~ 151 (301) T 2vdj_A 118 VDY-WEELKR-IMEYSKTNVTSTLHICWGAQAGLYH 151 (301) T ss_dssp STT-HHHHHH-HHHHHHHHEEEEEEETHHHHHHHHH T ss_pred CHH-HHHHHH-HHHHHHHCCCCEEEEHHHHHHHHHH T ss_conf 628-999999-9999997299836551889999999 No 19 >2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Probab=36.08 E-value=22 Score=15.65 Aligned_cols=54 Identities=17% Similarity=0.256 Sum_probs=34.9 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEE-ECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCC Q ss_conf 99999999999961789879999-7532333442057666079984788822257886 Q gi|254781074|r 143 WEQFTDSVIDLISNNHQNIVFML-WGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGF 199 (227) Q Consensus 143 W~~ft~~ii~~l~~~~~~vVfiL-wG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF 199 (227) ...+-..+++.|...+..++++. |+.--.+ .+++.-++-++ --|||.|-.+||. T Consensus 65 ~~~~~~~~~~~l~~~~~Dliv~~g~~~il~~--~~l~~~~~~~i-N~HpSlLP~~rG~ 119 (216) T 2ywr_A 65 KKEFEERMALELKKKGVELVVLAGFMRILSH--NFLKYFPNKVI-NIHPSLIPAFQGL 119 (216) T ss_dssp HHHHHHHHHHHHHHTTCCEEEESSCCSCCCH--HHHTTSTTCEE-EEESSCTTTTCST T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCH--HHHHHCCCCEE-ECCCCCCCCCCCC T ss_conf 6677999999998709999999471211778--78620369827-8189986658986 No 20 >3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Probab=33.09 E-value=25 Score=15.35 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=35.4 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEE-EECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCC Q ss_conf 59999999999996178987999-975323334420576660799847888222578862 Q gi|254781074|r 142 GWEQFTDSVIDLISNNHQNIVFM-LWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFF 200 (227) Q Consensus 142 gW~~ft~~ii~~l~~~~~~vVfi-LwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~ 200 (227) ..+.|-+.+++.|.+.+..++++ -|+.--.+- +++.-+..++ -.|||+|-.+||.. T Consensus 73 ~r~~~~~~l~~~l~~~~~Dliv~~g~~~il~~~--~l~~~~~~~i-N~HpslLP~~rG~~ 129 (215) T 3da8_A 73 SRDAWDVAITAATAAHEPDLVVSAGFMRILGPQ--FLSRFYGRTL-NTHPALLPAFPGTH 129 (215) T ss_dssp SHHHHHHHHHHHHHTTCCSEEEEEECCSCCCHH--HHHHHTTTEE-EEESSCTTSSCSTT T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCHHHHCCHH--HHHHHCCCCC-CCCCCCCCCCCCCC T ss_conf 999999999999876099999984613346888--8642204875-07888798889988 No 21 >2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), homoserine O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} Probab=33.03 E-value=7.7 Score=18.47 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=25.0 Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH Q ss_conf 43259999999999996178987999975323334 Q gi|254781074|r 139 RGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKK 173 (227) Q Consensus 139 ~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~ 173 (227) ..+ |++++ .+|+...+++..++++|||.+|.-. T Consensus 130 v~y-w~eL~-~ii~wa~~~~~s~LgICwGaQa~~~ 162 (312) T 2h2w_A 130 VDY-WEELT-EIMEWSRHNVYSTMFICWAAQAGLY 162 (312) T ss_dssp STT-HHHHH-HHHHHHHHHEEEEEEETHHHHHHHH T ss_pred CHH-HHHHH-HHHHHHHHCCCCEEEECHHHHHHHH T ss_conf 638-99999-9999999709984877399999999 No 22 >1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Probab=29.24 E-value=28 Score=14.95 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHHCCCCCEEEEE-ECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCC Q ss_conf 9999999999961789879999-7532333442057666079984788822257886 Q gi|254781074|r 144 EQFTDSVIDLISNNHQNIVFML-WGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGF 199 (227) Q Consensus 144 ~~ft~~ii~~l~~~~~~vVfiL-wG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF 199 (227) +.....+++.+...+..++++. |+.--.+ .+++..+..++ -.|||+|-.+||. T Consensus 65 ~~~~~~l~~~l~~~~~Dliv~~g~~~ii~~--~il~~~~~~~i-N~HpslLP~~rG~ 118 (209) T 1meo_A 65 VEFDSAIDLVLEEFSIDIVCLAGFMRILSG--PFVQKWNGKML-NIHPSLLPSFKGS 118 (209) T ss_dssp HHHHHHHHHHHHHTTCCEEEEESCCSCCCH--HHHHHTTTSEE-EEESSSTTSSCSS T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCHHCCH--HHHHHHHCCCE-ECCCCCCCCCCCC T ss_conf 888999999998619999999560010778--99987607958-7578667777786 No 23 >2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens} Probab=27.98 E-value=21 Score=15.76 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=22.6 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHC Q ss_conf 0003479863046999999999741888877401243220 Q gi|254781074|r 79 CFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGH 118 (227) Q Consensus 79 aFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~ 118 (227) |.++...+++|+-|++|.+++.++.=-..|. ||-.||- T Consensus 2 ~m~s~~~i~IP~gl~~lL~~ftreVLR~qP~--di~~Faa 39 (50) T 2kyg_A 2 AMGSMSHIQIPPGLTELLQGYTVEVLRQQPP--DLVEFAV 39 (50) T ss_dssp CCCTTCCCCCCTTHHHHHHHHHHHHHHHCCS--CHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC--HHHHHHH T ss_conf 6653223679965699999999999998951--5999999 No 24 >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Probab=22.23 E-value=26 Score=15.17 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=17.8 Q ss_pred HHHHHHHCCCHHHCEEEEEECC Q ss_conf 9999984299861779998118 Q gi|254781074|r 46 HYFRAFDITPFNKVKVVILGQD 67 (227) Q Consensus 46 ~IF~af~~~p~~~vKVVIlGQD 67 (227) .+++-|+.+|..++||+++|.. T Consensus 4 ~~~~k~~~~~~~~~kI~vvG~~ 25 (181) T 1fzq_A 4 SILRKLKSAPDQEVRILLLGLD 25 (181) T ss_dssp CHHHHCSSCCSSCEEEEEEEST T ss_pred HHHHHCCCCCCCEEEEEEECCC T ss_conf 8997630589978799999999 No 25 >3euf_A Uridine phosphorylase 1; nucleoside phosphorylase, uridine rescue, 5- benzylacyclouridine, alternative splicing, glycosyltransferase, transferase; HET: BAU; 1.90A {Homo sapiens} PDB: 3eue_A* 3ku4_A 3kuk_A* 3kvr_A 3kvy_A Probab=22.02 E-value=23 Score=15.47 Aligned_cols=13 Identities=46% Similarity=0.830 Sum_probs=11.7 Q ss_pred HHHCEEEEEECCC Q ss_conf 8617799981188 Q gi|254781074|r 56 FNKVKVVILGQDP 68 (227) Q Consensus 56 ~~~vKVVIlGQDP 68 (227) |.|||+|++|-|| T Consensus 68 fgDvk~V~~~GdP 80 (328) T 3euf_A 68 FGDVKFVCVGGSP 80 (328) T ss_dssp HTTCCEEEEESCH T ss_pred HCCEEEEEECCCH T ss_conf 1987799907998 Done!