Query         gi|254781074|ref|YP_003065487.1| uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 227
No_of_seqs    140 out of 1475
Neff          5.8 
Searched_HMMs 23785
Date          Wed Jun  1 00:15:24 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781074.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3cxm_A Uracil-DNA glycosylase; 100.0       0       0  614.1  21.0  227    1-227    31-264 (268)
  2 2boo_A UDG, uracil-DNA glycosy 100.0       0       0  597.5  23.2  223    3-227    20-243 (247)
  3 3a7n_A UDG, uracil-DNA glycosy 100.0       0       0  598.2  19.8  218    5-225    20-238 (238)
  4 4eug_A UDG, UNG, protein (glyc 100.0       0       0  596.9  20.7  218    7-225     4-222 (229)
  5 3fci_A UDG, uracil-DNA glycosy 100.0       0       0  591.6  20.5  220    1-223     1-221 (223)
  6 1udg_A Uracil-DNA glycosylase; 100.0       0       0  589.5  18.1  219    3-224    25-244 (244)
  7 2j8x_A Uracil-DNA glycosylase; 100.0       0       0  582.1  19.9  221    2-224     2-231 (231)
  8 2owr_A UDG, uracil-DNA glycosy 100.0       0       0  476.5  13.3  203    2-223    11-213 (218)
  9 1oe4_A SMUG1, single-strand se  96.7   0.021   9E-07   34.3  10.4  148   54-217    50-241 (247)
 10 1mug_A Protein (G:T/U specific  95.7    0.12 4.9E-06   29.7  11.1  127   57-194     8-145 (168)
 11 1wyw_A TDG, G/T mismatch-speci  95.7    0.12 4.9E-06   29.7  11.5  146   57-216    21-191 (230)
 12 1vk2_A Uracil-DNA glycosylase   91.2    0.56 2.4E-05   25.5   6.4  116   57-197    49-181 (204)
 13 3ikb_A Uncharacterized conserv  89.5    0.62 2.6E-05   25.2   5.4  116   54-194    34-169 (198)
 14 1ui0_A Uracil-DNA glycosylase;  87.6    0.84 3.5E-05   24.4   5.1  136   57-216    32-189 (205)
 15 2c2q_A G/U mismatch-specific D  86.6     1.8 7.4E-05   22.4   6.7  126   57-197    24-167 (199)
 16 2l3f_A Uncharacterized protein  78.1    0.45 1.9E-05   26.1   0.5  129   57-198    12-145 (166)
 17 2d3y_A Uracil-DNA glycosylase;  66.0     7.1  0.0003   18.7  10.8  129   57-196    49-197 (219)
 18 2vdj_A Homoserine O-succinyltr  63.5     1.3 5.4E-05   23.3   0.1   34  139-174   118-151 (301)
 19 2ywr_A Phosphoribosylglycinami  36.1      22 0.00092   15.6   4.0   54  143-199    65-119 (216)
 20 3da8_A Probable 5'-phosphoribo  33.1      25   0.001   15.3   3.4   56  142-200    73-129 (215)
 21 2h2w_A Homoserine O-succinyltr  33.0     7.7 0.00032   18.5   0.1   33  139-173   130-162 (312)
 22 1meo_A Phosophoribosylglycinam  29.2      28  0.0012   14.9   3.7   53  144-199    65-118 (209)
 23 2kyg_A CAMP-dependent protein   28.0      21 0.00089   15.8   1.6   38   79-118     2-39  (50)
 24 1fzq_A ADP-ribosylation factor  22.2      26  0.0011   15.2   1.2   22   46-67      4-25  (181)
 25 3euf_A Uridine phosphorylase 1  22.0      23 0.00099   15.5   0.9   13   56-68     68-80  (328)

No 1  
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MSGPP, SGPP, hydrolase, 5-bromouracil, structural genomics; 1.50A {Leishmania naiffi}
Probab=100.00  E-value=0  Score=614.15  Aligned_cols=227  Identities=47%  Similarity=0.920  Sum_probs=216.7

Q ss_pred             CCCCCCCHHHHHHHH----HHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCC
Q ss_conf             986868733899988----8726589999999999999779808588769999984299861779998118887752000
Q gi|254781074|r    1 MEGVKIHESWKSLLE----NHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAH   76 (227)
Q Consensus         1 l~~l~i~~sW~~~L~----~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~   76 (227)
                      +..+-++++|+++|+    +++.++||.+|.+||.+|+.++++|||+.++|||||++||+++||||||||||||++|||+
T Consensus        31 ~~~~~~dp~W~~~L~p~~~~~~~k~~f~~l~~fl~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPYh~~gqA~  110 (268)
T 3cxm_A           31 LAGLITNPEWRDFLAPITADSWRKGAFIRIERFLDEEKEKGRVILPPAADIFNAFNSCPFRGLKVVLLGQDPYHDLHQAH  110 (268)
T ss_dssp             TGGGCCCHHHHHHHHHHHSTTTTTTHHHHHHHHHHHHHHTTCCEESCGGGTTHHHHTSCSTTCCEEEEESSCCCSTTTCC
T ss_pred             HHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCC
T ss_conf             66566894599998663305230299999999999999869977698799999886089879379997427998999710


Q ss_pred             CCEEECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHC-CHHHHHHHHHHHH
Q ss_conf             710003479863046999999999741-88887740124322089688601011236860445432-5999999999999
Q gi|254781074|r   77 GLCFSVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGR-GWEQFTDSVIDLI  154 (227)
Q Consensus        77 GLaFsv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~-gW~~ft~~ii~~l  154 (227)
                      ||||||++++++|||||||||||.+|+ ++..+.+|||+.||+||||||||+|||++|+++||+++ ||++||+.||++|
T Consensus       111 GLaFSv~~~~k~PpSLrNI~KeL~~d~~~~~~p~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~~GWe~fT~~vI~~i  190 (268)
T 3cxm_A          111 GLCFSVLPEVPLPPSLRNIYKELTTDIAGFQAPKHGYLQSWSEQGMLMLNATLTVEAHKANSHSKTSGWAAFTDAVIQHL  190 (268)
T ss_dssp             SSTTCCCTTSCCCHHHHHHHHHHHHHSTTCCCCSSCCCHHHHTTTEEEEESSCCEETTCTTTTTTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             68654899999981599999999975288889998526889849858873248887787343578877899999999999


Q ss_pred             HCCCC-CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             61789-87999975323334420576660799847888222578862787089999999987889746508898
Q gi|254781074|r  155 SNNHQ-NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIPLS  227 (227)
Q Consensus       155 ~~~~~-~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~lp~~  227 (227)
                      +++++ ++||||||++||+++.+|+.++|+||+++|||||||+||||||+||++||+||+++|++||||+||++
T Consensus       191 ~~~~~~~vVflLWG~~Aq~~~~~i~~~~h~Il~s~HPSPLSa~rgF~g~~~Fsk~N~~L~~~g~~pIdW~lp~~  264 (268)
T 3cxm_A          191 SQHHPNRLVFLLWGGYAQQKKRLIDANRHVVLENVHPSPLSANRGWFGCRCFSACNEALQRMSHLPMHWQLPLN  264 (268)
T ss_dssp             HHHCSSCCEEEEESHHHHGGGGGSCTTTSEEEEECCSSHHHHTTTTTTCCHHHHHHHHHHHTTCCCCCCCCCSS
T ss_pred             HHCCCCCEEEEEECHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf             85277887999717589998842898786699757999734467988887689999999977999872228998


No 2  
>2boo_A UDG, uracil-DNA glycosylase; UNG, base excision repair, radiation resistance, DNA damage, DNA repair, glycosidase, hydrolase; 1.8A {Deinococcus radiodurans}
Probab=100.00  E-value=0  Score=597.55  Aligned_cols=223  Identities=48%  Similarity=0.928  Sum_probs=215.5

Q ss_pred             CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEEC
Q ss_conf             68687338999888726589999999999999779808588769999984299861779998118887752000710003
Q gi|254781074|r    3 GVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSV   82 (227)
Q Consensus         3 ~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv   82 (227)
                      ..+|+++|+++|.+|+.++|+.+|.++|.+++.. .+|||+.++|||||++||+++||||||||||||++|||+||||||
T Consensus        20 ~~~l~~~W~~~L~~e~~~~y~~~l~~~l~~~~~~-~~i~P~~~~iF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFSv   98 (247)
T 2boo_A           20 PANLPEDWQEALLPEFSAPYFHELTDFLRQERKE-YTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSV   98 (247)
T ss_dssp             CTTCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHH-SCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTCCSSSSSCC
T ss_pred             CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCEEEEC
T ss_conf             7888888999999885439999999999999828-933398899999986369757269996068997989527246654


Q ss_pred             CCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             479863046999999999741-8888774012432208968860101123686044543259999999999996178987
Q gi|254781074|r   83 PLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNI  161 (227)
Q Consensus        83 ~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v  161 (227)
                      +.++++|||||||||||++|+ ++..+++|||++||+||||||||+|||++|+++||+++||++||+.+|++|+++++++
T Consensus        99 ~~~~k~ppSL~NI~kel~~d~~~~~~p~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~i~~~~~~v  178 (247)
T 2boo_A           99 RPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAGQANSHQGKGWEHFTDAVIKAVNAKEERV  178 (247)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHSTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHTCSSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             78898886689999999875079877887627779859889960647753899998545887999999999998647886


Q ss_pred             EEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             999975323334420576660799847888222578862787089999999987889746508898
Q gi|254781074|r  162 VFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIPLS  227 (227)
Q Consensus       162 VfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~lp~~  227 (227)
                      ||||||++||+++.+|+..+|+||+++||||||+ ||||||+||++||++|+++|++||||+||++
T Consensus       179 Vf~LWG~~A~~~~~~i~~~~h~il~~~HPSPls~-~~F~g~~~F~k~N~~L~~~g~~pIdW~lp~~  243 (247)
T 2boo_A          179 VFILWGSYARKKKKLITGKNHVVIESGHPSPLSE-QYFFGTRPFSKTNEALEKAGRGPVEWQLPAT  243 (247)
T ss_dssp             EEEEESHHHHGGGGGCCCTTCEEEEECCSSTTTG-GGTTTCCHHHHHHHHHHHTTCCCCCCCCCSS
T ss_pred             EEEEECHHHHHHHCCCCCCCCEEEECCCCCHHHC-CCCCCCCHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             9999687899865035888867996589881224-8999998789999999986999973108873


No 3  
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A*
Probab=100.00  E-value=0  Score=598.24  Aligned_cols=218  Identities=41%  Similarity=0.784  Sum_probs=211.7

Q ss_pred             CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCC
Q ss_conf             68733899988872658999999999999977980858876999998429986177999811888775200071000347
Q gi|254781074|r    5 KIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPL   84 (227)
Q Consensus         5 ~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~   84 (227)
                      .++++|++.|+.+  ++|+.+|.++|.+|+.+++.|||+.++|||||+ +|+++|||||+||||||++|||+||||||+.
T Consensus        20 l~~~~W~~~L~~~--~~~~~~l~~fL~~e~~~~~~i~P~~~~IF~af~-~p~~~vKVVIlGQDPYh~~gqA~GLaFSv~~   96 (238)
T 3a7n_A           20 LVERGWAAALEPV--ADQVAHMGQFLRAEIAAGRRYLPAGSNVLRAFT-FPFDNVRVLIVGQDPYPTPGHAVGLSFSVAP   96 (238)
T ss_dssp             TSCHHHHHHTGGG--HHHHHHHHHHHHHHHHTTCCCBSCGGGTTGGGS-SCGGGCCEEEEESSCCSSTTTCCSSTTCCCT
T ss_pred             HCCHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHC-CCHHHCEEEEEECCCCCCCCCCCEECCCCCC
T ss_conf             3177799999998--999999999999999868978928899999852-8987917998842799999961517143489


Q ss_pred             CCC-CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             986-3046999999999741888877401243220896886010112368604454325999999999999617898799
Q gi|254781074|r   85 GIR-IPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVF  163 (227)
Q Consensus        85 ~~~-~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVf  163 (227)
                      +++ +|||||||||||+.|++...+++|||+.||+||||||||+|||++|+++||+++||++||+.+|++|+++++++||
T Consensus        97 ~~~~iPpSLrNI~Kel~~d~g~~~~~~gdL~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~fT~~vi~~l~~~~~~vVf  176 (238)
T 3a7n_A           97 DVRPWPRSLANIFDEYTADLGYPLPSNGDLTPWAQRGVLLLNRVLTVRPSNPASHRGKGWEAVTECAIRALAARAAPLVA  176 (238)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCCCCCSSCCCHHHHHTTEEEEESSCCBCTTCTTTTTTSSHHHHHHHHHHHHHHSSSCEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             98778889999999999852999999988889986988997634551288877654788699999999999815799589


Q ss_pred             EEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             99753233344205766607998478882225788627870899999999878897465088
Q gi|254781074|r  164 MLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIP  225 (227)
Q Consensus       164 iLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~lp  225 (227)
                      ||||++||+++.+|+..+|+||+++|||||||+||||||+||++||++|+++|++||||+||
T Consensus       177 iLWG~~Aq~~~~~I~~~~h~il~s~HPSPlSa~rgF~gs~~Fsk~N~~L~~~g~~pIdW~lp  238 (238)
T 3a7n_A          177 ILWGRDASTLKPMLAAGNCVAIESPHPSPLSASRGFFGSRPFSRANELLVGMGAEPIDWRLP  238 (238)
T ss_dssp             EEESHHHHTTHHHHTTSSEEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCCCCC
T ss_pred             EEECHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             98675898610345878857997889995022679989986899999999869998078897


No 4  
>4eug_A UDG, UNG, protein (glycosylase); hydrolase; 1.40A {Escherichia coli B} SCOP: c.18.1.1 PDB: 5eug_A 1eug_A 2uug_A 3eug_A 2eug_A 1uug_A 1lqj_A 1lqm_A 1lqg_A 1flz_A 1eui_A 2jhq_A
Probab=100.00  E-value=0  Score=596.88  Aligned_cols=218  Identities=52%  Similarity=0.961  Sum_probs=212.2

Q ss_pred             CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCCC
Q ss_conf             73389998887265899999999999997798085887699999842998617799981188877520007100034798
Q gi|254781074|r    7 HESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPLGI   86 (227)
Q Consensus         7 ~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~   86 (227)
                      .-+|+++|.+|+.++||.+|.++|.+|+.++.+|||+.++|||||++||+++||||||||||||++|||+||||||+.++
T Consensus         4 ~~sW~~~L~~e~~~~yf~~l~~~l~~e~~~~~~i~P~~~~iF~af~~~p~~~vKVVIlGQDPY~~~~~A~GLaFsv~~~~   83 (229)
T 4eug_A            4 ELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGI   83 (229)
T ss_dssp             -CCHHHHHTTGGGSHHHHHHHHHHHHHHTTTSCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTTCSSSTTCCCTTS
T ss_pred             CCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHEEEEEEECCCCCCCCCCCCEEEECCCCC
T ss_conf             65699999989758999999999999998599564987999998862896374899972479998887687654458998


Q ss_pred             CCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             63046999999999741-88887740124322089688601011236860445432599999999999961789879999
Q gi|254781074|r   87 RIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFML  165 (227)
Q Consensus        87 ~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiL  165 (227)
                      ++|||||||||||++|+ ++..+++|||+.||+||||||||+|||++|+++||+++||++||+.+|++|+++++++||||
T Consensus        84 k~PpSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~vVf~L  163 (229)
T 4eug_A           84 AIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLL  163 (229)
T ss_dssp             CCCHHHHHHHHHHHHHSTTCCCCSCCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEEECEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             88888999999999853898778988664375398799723388877788887787879999999999984689849999


Q ss_pred             ECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             753233344205766607998478882225788627870899999999878897465088
Q gi|254781074|r  166 WGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIP  225 (227)
Q Consensus       166 wG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~lp  225 (227)
                      ||++||+++.+|+..+|+||+++|||||||+||||||+||++||++|+++|++|||| +|
T Consensus       164 WG~~A~~~~~~i~~~~~~Il~s~HPSPlsa~rgF~g~~~F~k~N~~L~~~~~~pIdW-~~  222 (229)
T 4eug_A          164 WGSHAQKKGAIIDKQRHHVLKAPQPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDW-MP  222 (229)
T ss_dssp             ESHHHHHHTTTSCTTTSEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCC-SC
T ss_pred             ECHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEC-CC
T ss_conf             676889877417988866997279980004789889987999999999869998327-88


No 5  
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 4skn_E* 1okb_A
Probab=100.00  E-value=0  Score=591.65  Aligned_cols=220  Identities=51%  Similarity=0.905  Sum_probs=212.6

Q ss_pred             CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEE
Q ss_conf             98686873389998887265899999999999997798085887699999842998617799981188877520007100
Q gi|254781074|r    1 MEGVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCF   80 (227)
Q Consensus         1 l~~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaF   80 (227)
                      ||  .|+++|+++|.+|+.++|+.+|.++|.+++.. .+|||+.++|||||++||+++||||||||||||++|||+||||
T Consensus         1 m~--~~~~sW~~~l~~e~~~~y~~~l~~~l~~~~~~-~~i~P~~~~iF~af~~~~~~~vKVVIlGQDPY~~~~~A~GLaF   77 (223)
T 3fci_A            1 ME--FFGESWKKHLSGEFGKPYFIKLMGFVAEERKH-YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCF   77 (223)
T ss_dssp             CC--SSCHHHHHHHGGGTTSHHHHHHHHHHHHHHHH-SCEESCGGGTTGGGTSSCGGGCCEEEEECSCCCSTTTCCSSTT
T ss_pred             CC--CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHC-CCEECCHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCEEE
T ss_conf             99--65667999999886659999999999999818-9252880899999873898684799961689999985254443


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             03479863046999999999741-88887740124322089688601011236860445432599999999999961789
Q gi|254781074|r   81 SVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQ  159 (227)
Q Consensus        81 sv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~  159 (227)
                      ||++++++|||||||||||++|+ ++..|.+|||++||+||||||||+|||++|+|+||+++||++||+.+|++|+++++
T Consensus        78 sv~~~~k~ppSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~~~~~SH~~~gW~~ft~~ii~~l~~~~~  157 (223)
T 3fci_A           78 SVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSN  157 (223)
T ss_dssp             CCCTTSCCCHHHHHHHHHHHHHSTTCCCCSSCCTHHHHTTTEEEEESSCCEETTCTTTTTTSSHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             16799887930999999998614888889987577787499898606477667788997778889999999998741478


Q ss_pred             CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             8799997532333442057666079984788822257886278708999999998788974650
Q gi|254781074|r  160 NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQ  223 (227)
Q Consensus       160 ~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~  223 (227)
                      ++||||||++||++++.|+..+|+||+++|||||||+|||+||+||++||++|+++|++||||.
T Consensus       158 ~vVfiLWG~~A~~~~~~i~~~~h~il~~~HPSPlsa~~gF~~s~~F~k~N~~L~~~~~~pIdW~  221 (223)
T 3fci_A          158 GLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWK  221 (223)
T ss_dssp             SCEEEEESHHHHHHTTTCCTTTSEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCTT
T ss_pred             CEEEEEECHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf             8699995668999885279878759970799830116798899879999999998698895880


No 6  
>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} SCOP: c.18.1.1 PDB: 1lau_E 1udh_A 1udi_E 2c53_A* 2c56_A*
Probab=100.00  E-value=0  Score=589.50  Aligned_cols=219  Identities=39%  Similarity=0.666  Sum_probs=208.3

Q ss_pred             CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEEC
Q ss_conf             68687338999888726589999999999999779808588769999984299861779998118887752000710003
Q gi|254781074|r    3 GVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSV   82 (227)
Q Consensus         3 ~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv   82 (227)
                      .+.|+++|+++|.+|+.++|+.+|.++|.+++. +.+|||+.++|||||++||+++||||||||||||++|||+||||||
T Consensus        25 ~~~i~~sW~~~L~~e~~k~y~~~l~~~l~~~~~-~~~i~P~~~~iF~af~~~~~~~vKVVIlGQDPY~~~~~A~GLaFsv  103 (244)
T 1udg_A           25 VFLIDDAWRPLMEPELANPLTAHLLAEYNRRCQ-TEEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAFSV  103 (244)
T ss_dssp             HHTCCGGGHHHHHHHHTSHHHHHHHHHHHHHHH-HSCEESCTTTTTTHHHHSCGGGCCEEEEECSCCCSTTTCSSSSSCC
T ss_pred             HCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCEEECCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCEEECC
T ss_conf             668986899999999754999999999999981-9958897299999884798668679998517999998607655136


Q ss_pred             CCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             479863046999999999741-8888774012432208968860101123686044543259999999999996178987
Q gi|254781074|r   83 PLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNI  161 (227)
Q Consensus        83 ~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v  161 (227)
                      +.++++|||||||||||++|+ ++..+.+|||++||+||||||||+|||++|+++||+++||++||+.+|++|+++++++
T Consensus       104 ~~~~~~ppSLrNI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~~i  183 (244)
T 1udg_A          104 RANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGL  183 (244)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCTTCCCCSCCCCHHHHHTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             89999985699999999864378888887777778649899970658861577888788987999999999998368986


Q ss_pred             EEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             999975323334420576660799847888222578862787089999999987889746508
Q gi|254781074|r  162 VFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQI  224 (227)
Q Consensus       162 VfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~l  224 (227)
                      ||||||++||++.. ++..+|+||+++||||||+ +||+||+||++||++|+++|++||||+|
T Consensus       184 VfiLWG~~Aq~~~~-~~~~~h~Il~~~HPSPls~-~gF~gs~~F~k~N~~L~~~~~~pIdW~l  244 (244)
T 1udg_A          184 VFMLWGTHAQNAIR-PDPRVHCVLKFSHPSPLSK-VPFGTCQHFLVANRYLETRSISPIDWSV  244 (244)
T ss_dssp             EEEEESHHHHHHCC-CCTTTSEEEEECCSSTTSS-SCGGGCCHHHHHHHHHHTTTCCCCCCCC
T ss_pred             EEEEECHHHHHHCC-CCCCCCEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99996789885342-4788886998689882113-6899997689999999987999903739


No 7  
>2j8x_A Uracil-DNA glycosylase; hydrolase/inhibitor, hydrolase/inhibitor complex, EBV, DNA repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1
Probab=100.00  E-value=0  Score=582.09  Aligned_cols=221  Identities=41%  Similarity=0.790  Sum_probs=211.1

Q ss_pred             CCCCCCHHHHHHHH-HHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEE
Q ss_conf             86868733899988-87265899999999999997798085887699999842998617799981188877520007100
Q gi|254781074|r    2 EGVKIHESWKSLLE-NHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCF   80 (227)
Q Consensus         2 ~~l~i~~sW~~~L~-~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaF   80 (227)
                      |++.|+++|+++|+ .++.+.++.++.+++.+++ ++.+|||+.++|||||++||+++||||||||||||+ |||+||||
T Consensus         2 e~~~l~~~W~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~iyP~~~~iF~af~~~~~~~vKVVIlGQDPY~~-~~A~GLaF   79 (231)
T 2j8x_A            2 ENLLLPDLWLDFLQLSPIFQRKLAAVIACVRRLR-TQATVYPEEDMCMAWARFCDPSDIKVVILGQDPYHG-GQANGLAF   79 (231)
T ss_dssp             CCCCCCHHHHHHHTCCHHHHHHHHHHHHHHHHHH-TTSCEESCTTTTTGGGSSSCGGGCCEEEEECSCCSS-SCCCSSSS
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH-CCCEECCCHHHHHHHHHCCCHHHEEEEEEECCCCCC-CCEEEEEE
T ss_conf             8774285899988049867999999999999986-498147988999999872888890799995689988-84201532


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             03479863046999999999741-88887740124322089688601011236860445432599999999999961789
Q gi|254781074|r   81 SVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQ  159 (227)
Q Consensus        81 sv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~  159 (227)
                      ||+.++++|||||||||||+.|+ ++..+.+|||+.||+||||||||+|||++|+++||+++||+.||+.+|++|+++++
T Consensus        80 Sv~~~~~~ppSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~vi~~l~~~~~  159 (231)
T 2j8x_A           80 SVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERLK  159 (231)
T ss_dssp             CCCTTSCCCHHHHHHHHHHHHHCTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCS
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             13589979934999999998645878889989878887487688714389748998886679816469999999971667


Q ss_pred             CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHH-------HCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             8799997532333442057666079984788822-------2578862787089999999987889746508
Q gi|254781074|r  160 NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPL-------SASHGFFGCRHFSKANRYLQEHGKTTVNWQI  224 (227)
Q Consensus       160 ~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPl-------s~~~gF~~~~~F~~~N~~L~~~~~~~IdW~l  224 (227)
                      ++||||||++||+++.+|+..+|+||+++|||||       ||+||||||+||++||++|+++|++||||+|
T Consensus       160 ~vVfiLWG~~A~~~~~~i~~~~h~Il~s~HPSPl~~~~~~~sa~~gF~g~~~F~~~N~~L~~~~~~pIdW~l  231 (231)
T 2j8x_A          160 ACVFMLWGAKAGDKASLINSKKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNFLREKGLGEIDWRL  231 (231)
T ss_dssp             SCEEEEESHHHHGGGGGSCTTTSEEEEECCSSGGGGGCCSSCSSCCSTTCCHHHHHHHHHHHTTCCCCCCCC
T ss_pred             CEEEEEECHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             859999587899753035887877997579983013666653258988997699999999987999904719


No 8  
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A
Probab=100.00  E-value=0  Score=476.48  Aligned_cols=203  Identities=20%  Similarity=0.359  Sum_probs=181.8

Q ss_pred             CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEE
Q ss_conf             86868733899988872658999999999999977980858876999998429986177999811888775200071000
Q gi|254781074|r    2 EGVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFS   81 (227)
Q Consensus         2 ~~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFs   81 (227)
                      ..+++|++|+++|++.  ++++.+|.+++.+     ..++|++++|||||+ +|+++|||||+||||||  ++|+|||||
T Consensus        11 ~~~~~h~sW~~~l~~~--~~~~~~i~~~l~~-----e~i~P~~~~iF~af~-~~~~~vKVVIlGQDPYp--~~a~GLaFS   80 (218)
T 2owr_A           11 YTITYHNDWEPVMSQL--VEFYNEVASWLLR-----DETSPIPDKFFIQLK-QPLRNKRVCVCGIDPYP--KDGTGVPFE   80 (218)
T ss_dssp             CEEEEEGGGHHHHHHH--HHHHHTTHHHHTT-----SCEESCGGGTTGGGG-SCSTTCCEEEEESSCCS--SCCCSSTTC
T ss_pred             CCCCCCCHHHHHHHHH--HHHHHHHHHHHHC-----CCCCCCHHHHHHHHC-CCHHHCEEEEEECCCCC--CCCCCCCCC
T ss_conf             5560182799999999--9999999999964-----877989899999972-99889379998457999--867672246


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             34798630469999999997418888774012432208968860101123686044543259999999999996178987
Q gi|254781074|r   82 VPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNI  161 (227)
Q Consensus        82 v~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v  161 (227)
                      |+.  ++|||||||||||++|++...+.++++  ||+||||||||+|||++|+|+||+ .||++||+.+|+.|++ +.++
T Consensus        81 v~~--~~ppSL~NI~kel~~~~~~~~~~~~~~--wa~QGVLLLNt~LTv~~g~~~sH~-~~W~~ft~~ii~~l~~-~~~v  154 (218)
T 2owr_A           81 SPN--FTKKSIKEIASSISRLTGVIDYKGYNL--NIIDGVIPWNYYLSCKLGETKSHA-IYWDKISKLLLQHITK-HVSV  154 (218)
T ss_dssp             CTT--SCCHHHHHHHHHHHHHHCCCCCSEECG--GGSTTEEEEESSSCEETTCTTTTH-HHHHHHHHHHHHHHTT-TCSE
T ss_pred             CCC--CCCHHHHHHHHHHHHCCCCCCCCCCCH--HHCCCEEEEECEEEEECCCCCCCC-CCHHHHHHHHHHHHHC-CCCE
T ss_conf             789--877699999999886229888898751--321988987555887569878777-5849999999999973-6872


Q ss_pred             EEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99997532333442057666079984788822257886278708999999998788974650
Q gi|254781074|r  162 VFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQ  223 (227)
Q Consensus       162 VfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~  223 (227)
                      ||+|||++|++++..|+. +|.+++++||||  ++|||+||+||++||++|+++|++||||+
T Consensus       155 v~ll~g~~a~~~~~~i~~-~~~~i~~~HPss--~~rgF~g~~~F~k~N~~L~~~g~~~IdW~  213 (218)
T 2owr_A          155 LYCLGKTDFSNIRAKLES-PVTTIVGYHPAA--RDRQFEKDRSFEIINVLLELDNKAPINWA  213 (218)
T ss_dssp             EEEECHHHHHHHHHHCSC-CCEEEEECCTTC------CCCCCCCHHHHHHHHTTTSCCCCGG
T ss_pred             EEEEECHHHHHHHHCCCC-CCEEEECCCCCC--CCCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf             899840898867634788-958997988744--47798999718999999998699981378


No 9  
>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A* 1oe6_A*
Probab=96.72  E-value=0.021  Score=34.29  Aligned_cols=148  Identities=17%  Similarity=0.150  Sum_probs=83.3

Q ss_pred             CCHHHCEEEEEECCCCCCCCCCCCCEEECCC-------------------------CCC---CHHHHHHHHHHHHHHCCC
Q ss_conf             9986177999811888775200071000347-------------------------986---304699999999974188
Q gi|254781074|r   54 TPFNKVKVVILGQDPYHNYGQAHGLCFSVPL-------------------------GIR---IPPSLVNVYKELQEDVNF  105 (227)
Q Consensus        54 ~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~-------------------------~~~---~p~SLrNI~Kel~~d~~~  105 (227)
                      +. ...||++||++|=|.-+--+|+.|.-..                         +..   --.|=+-|...+++-++.
T Consensus        50 ~~-~~~~vl~lGmNPGp~Gm~qTGVPFgd~~~vr~~l~i~~~v~~P~~~HPKRpi~G~~c~r~EvSg~rlW~l~~~~~g~  128 (247)
T 1oe4_A           50 CK-SKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLCGQ  128 (247)
T ss_dssp             CS-SCCSEEEEESSCCTTTHHHHSSTTCCHHHHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHHSS
T ss_pred             CC-CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             18-99988998328987778641868588799987851667467885447677654657665565398899999988399


Q ss_pred             CCCCCCHHHHHHCCCEEEECCH-HCC--CCCCCH-------H-HHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
Q ss_conf             8877401243220896886010-112--368604-------4-5432599999999999961789879999753233344
Q gi|254781074|r  106 IPPTHGFLEHWGHEGVLLLNAV-LTV--EEGRAA-------S-HRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQ  174 (227)
Q Consensus       106 ~~~~~g~L~~Wa~QGVLLLNt~-LTv--~~g~~~-------S-H~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~  174 (227)
                        |..      .-+-+++.|.+ |..  +.|+.-       + -..+ ++.-.+.+.+.|..-+.. +.+--|++|++..
T Consensus       129 --pe~------ff~~~fv~N~CPL~f~~~~GkN~TP~~l~~~e~~~l-~~~Cd~~L~~~v~~L~p~-~VVgVG~~Ae~ra  198 (247)
T 1oe4_A          129 --PET------FFKHCFVHNHCPLIFMNHSGKNLTPTDLPKAQRDTL-LEICDEALCQAVRVLGVK-LVIGVGRFSEQRA  198 (247)
T ss_dssp             --HHH------HHTTEEEEESCCCEEECTTCCEECGGGSCHHHHHHH-HHHHHHHHHHHHHHHTCS-EEEEESHHHHHHH
T ss_pred             --HHH------HHHHHEEEECCCCEECCCCCCCCCCHHCCHHHHHHH-HHHHHHHHHHHHHHCCCC-EEEEECHHHHHHH
T ss_conf             --989------865342572377333188998688000588899999-999999999999861972-8999778999999


Q ss_pred             HCC-C--CCCCEEEEECCCCHHH--CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             205-7--6660799847888222--57886278708999999998788
Q gi|254781074|r  175 DVL-D--HKRHLVLKAAHPSPLS--ASHGFFGCRHFSKANRYLQEHGK  217 (227)
Q Consensus       175 ~~i-~--~~~~~il~~~HPSPls--~~~gF~~~~~F~~~N~~L~~~~~  217 (227)
                      +.. .  ...-.|..-.||||.|  |+||+-     .++...|+++|.
T Consensus       199 ~~al~~~g~~V~v~~i~HPSPasp~aN~~W~-----~~a~~~l~~~g~  241 (247)
T 1oe4_A          199 RKALMAEGIDVTVKGIMHPSPRNPQANKGWE-----GIVRGQLLELGV  241 (247)
T ss_dssp             HHHHHHTTCSCEEEEECCCCTTCGGGTTTHH-----HHHHHHHHHHTC
T ss_pred             HHHHCCCCCCCEEEECCCCCCCCCHHCCCCH-----HHHHHHHHHCCC
T ss_conf             9986046998558645799998800005848-----999999998774


No 10 
>1mug_A Protein (G:T/U specific DNA glycosylase); hydrolase; 1.80A {Escherichia coli} SCOP: c.18.1.2 PDB: 1mtl_A 1mwi_A* 1mwj_A
Probab=95.74  E-value=0.12  Score=29.75  Aligned_cols=127  Identities=15%  Similarity=0.110  Sum_probs=67.9

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHCCCEEEECCHHCCCCCCC
Q ss_conf             61779998118887752000710003479863046999999999741888877-40124322089688601011236860
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPT-HGFLEHWGHEGVLLLNAVLTVEEGRA  135 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~-~g~L~~Wa~QGVLLLNt~LTv~~g~~  135 (227)
                      .+.||+|+|+-|=.. ...+|..|+-+.+ .       ..+.|........+. --+...-.+.||-+.|.+-.+.....
T Consensus         8 p~~~vlivG~~Pg~~-s~~~g~~y~~p~n-~-------fw~~l~~~~~~~~~~~~~~~~~l~~~~i~ltd~v~~~~~~~~   78 (168)
T 1mug_A            8 PGLRVVFCGINPGLS-SAGTGFPFAHPAN-R-------FWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQAN   78 (168)
T ss_dssp             TTCSEEEEESSCCHH-HHHHSSTTCSTTC-C-------HHHHHHHTTSSSSCCCGGGGGGGGGGTEEEEESCCCCCSSGG
T ss_pred             CCCCEEEEECCCCHH-HHHCCCCCCCCHH-H-------HHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf             999889984798977-8855998679557-9-------999999826877788877764123366798513245577889


Q ss_pred             HHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH-HHCCCC---------CCCEEEEECCCCHHH
Q ss_conf             44543259999999999996178987999975323334-420576---------660799847888222
Q gi|254781074|r  136 ASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKK-QDVLDH---------KRHLVLKAAHPSPLS  194 (227)
Q Consensus       136 ~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~-~~~i~~---------~~~~il~~~HPSPls  194 (227)
                      .....- .+.-...+.+.|...++.+| ++.|+.|.+. ......         ....++..+||||+.
T Consensus        79 ~~~~~E-~~~~~~~L~~~l~~~~P~iI-~~~G~~a~~~~~~~~~~~~g~q~~~~~~~~~~vlPspS~~~  145 (168)
T 1mug_A           79 EVSKQE-LHAGGRKLIEKIEDYQPQAL-AILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLS  145 (168)
T ss_dssp             GSCHHH-HHHHHHHHHHHHHHHCCSEE-EEECHHHHHHHHTCCSCCSEEEEEEETTEEEEEECCCSTTS
T ss_pred             CCCHHH-HHHHHHHHHHHHHHHCCCHH-HHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCHHH
T ss_conf             973899-98721889999998391801-42699999998477877655324567997779944899677


No 11 
>1wyw_A TDG, G/T mismatch-specific thymine DNA glycosylase; hydrolase; 2.10A {Homo sapiens} SCOP: c.18.1.2 PDB: 2d07_A 2rba_A*
Probab=95.73  E-value=0.12  Score=29.72  Aligned_cols=146  Identities=14%  Similarity=0.069  Sum_probs=80.3

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCC---CCCCHHHHHHCCCEEEECCHHCCCCC
Q ss_conf             617799981188877520007100034798630469999999997418888---77401243220896886010112368
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIP---PTHGFLEHWGHEGVLLLNAVLTVEEG  133 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~---~~~g~L~~Wa~QGVLLLNt~LTv~~g  133 (227)
                      .+.||+|||+-|=.. ..+.|--|+=+.+.        +.+.|..- +...   ...-+..--...||-+.|.+--+..+
T Consensus        21 p~~~vLivG~~PG~~-S~~~G~~ya~p~N~--------FW~~L~~~-g~~~~~~~~~e~~~~l~~~gigltdvv~r~t~~   90 (230)
T 1wyw_A           21 FNLDIVIIGINPGLM-AAYKGHHYPGPGNH--------FWKCLFMS-GLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPG   90 (230)
T ss_dssp             SSCSEEEEESSCCHH-HHHHTSSSCSSSBC--------HHHHHHHT-TSSSSCCCGGGGGGHHHHHSEEEEESCCSCCSC
T ss_pred             CCCCEEEEECCCCHH-HHHCCCCCCCCCHH--------HHHHHHHH-CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             999789984288966-78438888786134--------99999997-488866787787666653144302122156877


Q ss_pred             C--CHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHH-HHHC-----------------CCCCCCEEEEECCCCHH
Q ss_conf             6--04454325999999999999617898799997532333-4420-----------------57666079984788822
Q gi|254781074|r  134 R--AASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQK-KQDV-----------------LDHKRHLVLKAAHPSPL  193 (227)
Q Consensus       134 ~--~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~-~~~~-----------------i~~~~~~il~~~HPSPl  193 (227)
                      .  +.+..-.-+.++....|+.+   ++. +.++-|+.|.. +...                 +......++..+||||+
T Consensus        91 ~s~ls~~E~~~~~~~L~~~I~~~---~P~-~iv~~G~~A~~~f~~~~~g~~~~~~~~G~q~~~~~~~~~~v~vlPS~S~~  166 (230)
T 1wyw_A           91 SKDLSSKEFREGGRILVQKLQKY---QPR-IAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSAR  166 (230)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHH---CCS-EEEEESHHHHHHHHHHHTCCCCSSCCSEECSCCSTTSCCEEEEECCCBTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH---CCC-EEEEECHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEECCCCCHH
T ss_conf             78987789987589999999983---996-89870789999998642167753311213554568878569985898188


Q ss_pred             HCCCCCCCC--CHHHHHHHHHHHCC
Q ss_conf             257886278--70899999999878
Q gi|254781074|r  194 SASHGFFGC--RHFSKANRYLQEHG  216 (227)
Q Consensus       194 s~~~gF~~~--~~F~~~N~~L~~~~  216 (227)
                      .|+-.+..-  ..|...-+++.+.+
T Consensus       167 na~~~r~~~k~~~~~~L~~~~d~l~  191 (230)
T 1wyw_A          167 CAQFPRAQDKVHYYIKLKDLRDQLK  191 (230)
T ss_dssp             CSSCCSGGGTHHHHHHHHHHHHHHT
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             6087748999999999999999987


No 12 
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=91.18  E-value=0.56  Score=25.51  Aligned_cols=116  Identities=22%  Similarity=0.255  Sum_probs=66.3

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCC-CC-C
Q ss_conf             617799981188877520007100034798630469999999997418888774012432208968860101123-68-6
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVE-EG-R  134 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~-~g-~  134 (227)
                      .+-||+|+|+.|-.. +..+|..|+-+.+    .-|+++..+    .+..           .+.|.+.|.+--.. .+ .
T Consensus        49 ~~a~imiVgeaPg~~-e~~~g~pf~g~sG----~ll~~~l~~----~gl~-----------~~~vyitn~vkc~pp~n~~  108 (204)
T 1vk2_A           49 LDTRIVFVGEGPGEE-EDKTGRPFVGRAG----MLLTELLRE----SGIR-----------REDVYICNVVKCRPPNNRT  108 (204)
T ss_dssp             TTCSEEEEESCCCHH-HHHHTCSSCSHHH----HHHHHHHHH----TTCC-----------GGGSEEEESCSSCCGGGCC
T ss_pred             CCCCEEEEECCCCHH-HHHCCCCCCCCHH----HHHHHHHHH----HCCC-----------CCCEEEEEEEEECCCCCCC
T ss_conf             999999998997455-6052985456538----789988776----2457-----------0235797678760886789


Q ss_pred             CH-HHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC-----C--------C-CCCCEEEEECCCCHHHCCC
Q ss_conf             04-4543259999999999996178987999975323334420-----5--------7-6660799847888222578
Q gi|254781074|r  135 AA-SHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDV-----L--------D-HKRHLVLKAAHPSPLSASH  197 (227)
Q Consensus       135 ~~-SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~-----i--------~-~~~~~il~~~HPSPls~~~  197 (227)
                      +. ....- ..++...-|+.+.    +-|.++.|+.|.+..-.     +        + .....++-+.|||++-.+.
T Consensus       109 ~~~~e~~~-c~~~l~~eI~li~----PkiIv~LG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~~pt~HPs~llrnp  181 (204)
T 1vk2_A          109 PTPEEQAA-CGHFLLAQIEIIN----PDVIVALGATALSFFVDGKKVSITKVRGNPIDWLGGKKVIPTFHPSYLLRNR  181 (204)
T ss_dssp             CCHHHHHH-HHHHHHHHHHHHC----CSEEEEESHHHHHHTTTTCCCCHHHHTTCCEECGGGCEEEEECCHHHHHHCC
T ss_pred             CCHHHHHH-CCCHHHHHHHCCC----CCEEEEECHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHCC
T ss_conf             99899988-4746777763148----6479715899999997267766420369558867998799981965987793


No 13 
>3ikb_A Uncharacterized conserved protein; APC63946, streptococcus mutans UA159, structural genomics, PSI-2, protein structure initiative; HET: FLC; 1.67A {Streptococcus mutans}
Probab=89.49  E-value=0.62  Score=25.22  Aligned_cols=116  Identities=19%  Similarity=0.224  Sum_probs=63.3

Q ss_pred             CCHHHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCCC
Q ss_conf             99861779998118887752000710003479863046999999999741888877401243220896886010112368
Q gi|254781074|r   54 TPFNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEEG  133 (227)
Q Consensus        54 ~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g  133 (227)
                      .+ .+-|++|+||.|--. ...+|..|.-..|       +.+++.|    |... ..    -....-|...|++.-.--+
T Consensus        34 g~-~~A~imiIGeAPG~~-ed~~G~PF~g~sG-------~~L~~~l----gl~r-~~----~~~~~~v~i~n~v~c~Pp~   95 (198)
T 3ikb_A           34 AP-KTARINIVGQAPGIK-AQESRLYWNDKSG-------DRLREWM----GVDY-DT----FYHSGYFAVIPMDFYYPGK   95 (198)
T ss_dssp             CC-TTCCEEEECSCCCHH-HHHHCCSSCSHHH-------HHHHHHH----TCCH-HH----HHHSSCEEECCSCSSCCCB
T ss_pred             CC-CCCCEEEEECCCCHH-HHHCCCCCCCCHH-------HHHHHHH----CCCH-HH----CCCCCCEEEEECCCCCCCC
T ss_conf             69-999889986898466-5215998878258-------8999995----9755-33----4655788998556678999


Q ss_pred             -CCH-----HH-HHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC----CC------C-CC--CEEEEECCCCHH
Q ss_conf             -604-----45-43259999999999996178987999975323334420----57------6-66--079984788822
Q gi|254781074|r  134 -RAA-----SH-RGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDV----LD------H-KR--HLVLKAAHPSPL  193 (227)
Q Consensus       134 -~~~-----SH-~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~----i~------~-~~--~~il~~~HPSPl  193 (227)
                       +.+     .. ..+ |.++...   .|   .++-|.++.|+.|.+..--    +.      . ..  -.++-..||||+
T Consensus        96 nr~~~~~p~~~~~~~-~~~~l~~---~l---~~pklIv~LG~~A~~~~L~~~~~~~~~~~~~~~~~~~~~~~pl~HPS~r  168 (198)
T 3ikb_A           96 GKSGDLPPRKGFAQK-WHQPILD---LL---PDIQLTILIGNYAQKYYLHQKSSVKLTDTVAHYKKYLPDYFPLVHPSPR  168 (198)
T ss_dssp             CSSSBCCCCTTHHHH-HHHHHHT---TC---TTCCEEEEESHHHHHHHTTCCTTSCHHHHHHTGGGGTTTEEEECCCCGG
T ss_pred             CCCCCCCCCHHHHHH-HHHHHHH---HC---CCCEEEEEECHHHHHHHHCCCCCCCHHHHHHCCHHHCCCEEEECCCCCC
T ss_conf             989999971999999-9999998---66---8970999878999998828677887043421115528897885489846


Q ss_pred             H
Q ss_conf             2
Q gi|254781074|r  194 S  194 (227)
Q Consensus       194 s  194 (227)
                      +
T Consensus       169 N  169 (198)
T 3ikb_A          169 N  169 (198)
T ss_dssp             G
T ss_pred             C
T ss_conf             6


No 14 
>1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} SCOP: c.18.1.2 PDB: 1ui1_A
Probab=87.64  E-value=0.84  Score=24.41  Aligned_cols=136  Identities=18%  Similarity=0.144  Sum_probs=74.7

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCC--CCC
Q ss_conf             617799981188877520007100034798630469999999997418888774012432208968860101123--686
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVE--EGR  134 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~--~g~  134 (227)
                      .+.||+|+||-|-.. +..+|..|+-..|.    =|++++.++    |+.           ++.|-+.|.+--..  ...
T Consensus        32 ~~a~imiVg~aPg~~-e~~~g~pf~G~aG~----lL~~~L~~~----gl~-----------~~~vyitn~vkc~p~~~~~   91 (205)
T 1ui0_A           32 PDAKLMIVGEGPGEE-EDKTGRPFVGKAGQ----LLNRILEAA----GIP-----------REEVYITNIVKCRPPQNRA   91 (205)
T ss_dssp             TTCSEEEEESCCCHH-HHHHSCSSCSHHHH----HHHHHHHHH----TCC-----------GGGSEEEESCSSCCGGGCC
T ss_pred             CCCCEEEEECCCCHH-HHHCCCCCCCCHHH----HHHHHHHHC----CCC-----------HHHEEEECCEEECCCCCCC
T ss_conf             999999995887607-76208864675788----999999983----999-----------8998866004013776789


Q ss_pred             CHHH-HHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC----C--------CCCCCEEEEECCCCHHHCCCCCCC
Q ss_conf             0445-43259999999999996178987999975323334420----5--------766607998478882225788627
Q gi|254781074|r  135 AASH-RGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDV----L--------DHKRHLVLKAAHPSPLSASHGFFG  201 (227)
Q Consensus       135 ~~SH-~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~----i--------~~~~~~il~~~HPSPls~~~gF~~  201 (227)
                      +... ...-+++|....|+.+    ++-|.++.|+.|.+..-.    +        +...-.++-+.|||.|-.+...-.
T Consensus        92 ~~~~ei~~C~~p~L~~ei~li----~Pkiii~lG~~a~~~~l~~~~~~~~~rG~~~~~~~~~~~~tyHPs~LlrnP~~~~  167 (205)
T 1ui0_A           92 PLPDEAKICTDKWLLKQIELI----APQIIVPLGAVAAEFFLGEKVSITKVRGKWYEWHGIKVFPMFHPAYLLRNPSRAP  167 (205)
T ss_dssp             CCHHHHHHHHHHTHHHHHHHH----CCSEEEEBSHHHHHHHHTSCCCHHHHTTCCEEETTEEECCBCCHHHHHHSCCCST
T ss_pred             CCHHHHHHHHHHHHHHHHHHC----CCCEEEEHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCHHHHHCCCCCC
T ss_conf             986999999999999999854----8836733089999998612544122247138738966999859768865935343


Q ss_pred             C-------CHHHHHHHHHHHCC
Q ss_conf             8-------70899999999878
Q gi|254781074|r  202 C-------RHFSKANRYLQEHG  216 (227)
Q Consensus       202 ~-------~~F~~~N~~L~~~~  216 (227)
                      .       ..|.++=+.|.+.-
T Consensus       168 ~~~K~~~w~Dl~~lk~~L~~l~  189 (205)
T 1ui0_A          168 GSPKHLTWLDIQEVKRALDALP  189 (205)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC
T ss_conf             0468899999999999998279


No 15 
>2c2q_A G/U mismatch-specific DNA glycosylase; radiation resistance, DNA repair enzymes, uracil-DNA glycosylase, MUG, hydrolase; 1.7A {Deinococcus radiodurans} PDB: 2c2p_A
Probab=86.57  E-value=1.8  Score=22.44  Aligned_cols=126  Identities=13%  Similarity=0.127  Sum_probs=66.9

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC--HHHHHHCCCEEEECCHHCCCCCC
Q ss_conf             6177999811888775200071000347986304699999999974188887740--12432208968860101123686
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHG--FLEHWGHEGVLLLNAVLTVEEGR  134 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g--~L~~Wa~QGVLLLNt~LTv~~g~  134 (227)
                      .+.+|+|+|+-|=.. ...+|.-|+-+ +..       ..+.|.. .|.......  +.......|+-+.|.+-....+.
T Consensus        24 p~~rilivG~aPG~~-s~~~G~~f~~p-~n~-------fw~~L~~-~Gl~~~~~~~~~~~~l~~~~i~~~~~v~~~~~~~   93 (199)
T 2c2q_A           24 PGLTLVLVGTAPSGI-SARARAYYANP-ENK-------FWRTLHA-VGLTPRQLVPQEYATLPQYGLGLTDVAKRHSGVA   93 (199)
T ss_dssp             TTCSEEEEESCCCHH-HHHHTSSSCST-TCC-------HHHHHHH-TTSSSSCCCGGGGGGGGGGTEEEEESCCSCCSCG
T ss_pred             CCCCEEEEECCCCHH-HHHCCCCCCCH-HHH-------HHHHHHH-HCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCC
T ss_conf             999789982697988-99669853680-788-------9999999-1898666788887676640542225668889888


Q ss_pred             CH-HHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH-CC--------------CCCCCEEEEECCCCHHHCCC
Q ss_conf             04-454325999999999999617898799997532333442-05--------------76660799847888222578
Q gi|254781074|r  135 AA-SHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQD-VL--------------DHKRHLVLKAAHPSPLSASH  197 (227)
Q Consensus       135 ~~-SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~-~i--------------~~~~~~il~~~HPSPls~~~  197 (227)
                      .. +....    ....+.+.|... ++.+.++.|+.|.+..- .-              ......++-.+||||+.+..
T Consensus        94 ~~~~~~e~----~~~~L~~~i~~~-~PrvIv~lG~~a~~~~l~~~~~~~~~g~~~~~~~~~~~~~v~~lphpS~l~~~~  167 (199)
T 2c2q_A           94 AALPGEAW----RPDELRRKVEHY-RPRIVAFTSKRGASETLGVPTGKLPYGPQPQPLDWPAETELWVLPSTSPLGHNH  167 (199)
T ss_dssp             GGSCGGGC----CHHHHHHHHHHH-CCSEEEESSHHHHHHHHCSCGGGCCSEECCCCSSCCTTCEEEECCCCSGGGTTT
T ss_pred             CCCCHHHH----HHHHHHHHHHHC-CCCEEEECCHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEECCCCHHHHCC
T ss_conf             87556565----118799999867-986999849899999853455423324543001345772079856975887173


No 16 
>2l3f_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=78.14  E-value=0.45  Score=26.09  Aligned_cols=129  Identities=11%  Similarity=0.076  Sum_probs=71.6

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC---CCHHHHHHCCCEEEECCHHCCC-C
Q ss_conf             61779998118887752000710003479863046999999999741888877---4012432208968860101123-6
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPT---HGFLEHWGHEGVLLLNAVLTVE-E  132 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~---~g~L~~Wa~QGVLLLNt~LTv~-~  132 (227)
                      .+.||+|+|--|=.. -.+.|.-|+-+.+.        .-+-|.+-++...+.   .-++..-.+.||=|.+.+-.+. +
T Consensus        12 ~~~~VLilGs~Pg~~-S~~~g~yYa~p~N~--------FW~il~~~~~~~~~~~~~~~~~~~L~~~gIgl~Dvv~~~~r~   82 (166)
T 2l3f_A           12 ENTEILILGSLPSDE-SIRKQQYYGNPGND--------FWRLVGHAIGENLQDMAYEKKLKTLKHNRIGLWDVFKAGSRE   82 (166)
T ss_dssp             SSCSEEEEESSCCHH-HHHHTSGGGSTTCT--------HHHHHHHHHTSCSTTSCHHHHHHHHHHTTEEEEESEEEECCC
T ss_pred             CCCCEEEEECCCCHH-HHHCCCCCCCCCCC--------HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHCCC
T ss_conf             998689985288977-88668875799884--------177899873898755571889999998595301001242106


Q ss_pred             CCCHHHHHCCHHHHHHHHHHHHHCCCCCE-EEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCC
Q ss_conf             86044543259999999999996178987-9999753233344205766607998478882225788
Q gi|254781074|r  133 GRAASHRGRGWEQFTDSVIDLISNNHQNI-VFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHG  198 (227)
Q Consensus       133 g~~~SH~~~gW~~ft~~ii~~l~~~~~~v-VfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~g  198 (227)
                      |..  .+.+ .+... +.++.|.+..+.+ +.++=|+.|.+.........-.++.-+-+||+.++..
T Consensus        83 gs~--d~~i-~~~~~-nd~~~l~~~~p~i~~i~fnG~~A~~~~~~~~~~~~~~~vLPSTSpana~~~  145 (166)
T 2l3f_A           83 GSQ--DSKI-GDEEI-NDFSGLKEMVPKLRLICFNGRKAGEYEPLLRGMGYETKVLPSSSGANRRFS  145 (166)
T ss_dssp             SSS--SCCC-CCCEE-CCCTTHHHHCSSCCEEEEESHHHHTTHHHHGGGTCEEEEECCCSHHHHTTC
T ss_pred             CCC--HHHH-HHHHH-HHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCCCCEEEECCCCCHHHHCCC
T ss_conf             767--7787-77666-689999985888119997899998565012578973898589876656629


No 17 
>2d3y_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, structural genomics, NPPSFA; HET: DU; 1.55A {Thermus thermophilus HB8} PDB: 2ddg_A* 2dem_A* 2dp6_A*
Probab=65.97  E-value=7.1  Score=18.67  Aligned_cols=129  Identities=16%  Similarity=0.121  Sum_probs=63.3

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHCCCEEEECCHHCC-CCC
Q ss_conf             617799981188877520007100034798630469999999997418888774012--43220896886010112-368
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFL--EHWGHEGVLLLNAVLTV-EEG  133 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L--~~Wa~QGVLLLNt~LTv-~~g  133 (227)
                      .+-+++|+|+-|--..+...|--|-+.      +|-....+.|.. .+... ....+  .......|..-|.+--- -.+
T Consensus        49 ~~A~imiIGeaPg~~ed~~~g~pf~g~------~sG~lL~~~l~~-~gl~~-~~~~~~~~~~~~~~~~~tn~vk~rpP~n  120 (219)
T 2d3y_A           49 PEARILLFGLAPGAHGSNRTGRPFTGD------ASGAFLYPLLHE-AGLSS-KPESLPGDDLRLYGVYLTAAVRCAPPKN  120 (219)
T ss_dssp             TTCSEEEEESCCCTTTHHHHSSTTTTS------HHHHHHHHHHHH-TTCBS-CSCCCTTSCCCBSSEEEEESCCSCCGGG
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCCEEE------CHHHHHHHHHHH-HHCCC-CCCCCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf             999989996898732023268984332------449899999999-86446-4201013323210147616513359888


Q ss_pred             CCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHC----CCC-------------CCCEEEEECCCCHHHCC
Q ss_conf             6044543259999999999996178987999975323334420----576-------------66079984788822257
Q gi|254781074|r  134 RAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDV----LDH-------------KRHLVLKAAHPSPLSAS  196 (227)
Q Consensus       134 ~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~----i~~-------------~~~~il~~~HPSPls~~  196 (227)
                      .+....   -...-..+++.+..-.++.|.++.|+.|-+..--    ...             ..-.++-+-|||++...
T Consensus       121 rp~~~e---~~~~~~~ll~e~~~lv~PkvIV~LG~~A~kall~~~~~~~~~~~~~~~~~~~~~~g~~v~ptyHPS~llr~  197 (219)
T 2d3y_A          121 KPTPEE---LRACARWTEVELGLLPEVRVYVALGRIALEALLAHFGLRKSAHPFRHGAHYPLPGGRHLLASYHVSRQNTQ  197 (219)
T ss_dssp             CCCHHH---HHHHHHHHHHHHHTCTTCCEEEEESHHHHHHHHHHHTCCTTTSCCCTTCEEEETTTEEEEEECCCSHHHHH
T ss_pred             CCCHHH---HHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCC
T ss_conf             998599---99852899999998618621320109999999876077644443324526737999189999688754559


No 18 
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=63.54  E-value=1.3  Score=23.30  Aligned_cols=34  Identities=21%  Similarity=0.504  Sum_probs=27.1

Q ss_pred             HHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
Q ss_conf             432599999999999961789879999753233344
Q gi|254781074|r  139 RGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQ  174 (227)
Q Consensus       139 ~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~  174 (227)
                      ..+ |+++++ +++...+++..++++|||.+|.-..
T Consensus       118 v~y-w~eL~~-ii~wa~~~~~~~LgiCwGaQa~l~~  151 (301)
T 2vdj_A          118 VDY-WEELKR-IMEYSKTNVTSTLHICWGAQAGLYH  151 (301)
T ss_dssp             STT-HHHHHH-HHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             CHH-HHHHHH-HHHHHHHCCCCEEEEHHHHHHHHHH
T ss_conf             628-999999-9999997299836551889999999


No 19 
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=36.08  E-value=22  Score=15.65  Aligned_cols=54  Identities=17%  Similarity=0.256  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEE-ECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCC
Q ss_conf             99999999999961789879999-7532333442057666079984788822257886
Q gi|254781074|r  143 WEQFTDSVIDLISNNHQNIVFML-WGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGF  199 (227)
Q Consensus       143 W~~ft~~ii~~l~~~~~~vVfiL-wG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF  199 (227)
                      ...+-..+++.|...+..++++. |+.--.+  .+++.-++-++ --|||.|-.+||.
T Consensus        65 ~~~~~~~~~~~l~~~~~Dliv~~g~~~il~~--~~l~~~~~~~i-N~HpSlLP~~rG~  119 (216)
T 2ywr_A           65 KKEFEERMALELKKKGVELVVLAGFMRILSH--NFLKYFPNKVI-NIHPSLIPAFQGL  119 (216)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEESSCCSCCCH--HHHTTSTTCEE-EEESSCTTTTCST
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCH--HHHHHCCCCEE-ECCCCCCCCCCCC
T ss_conf             6677999999998709999999471211778--78620369827-8189986658986


No 20 
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=33.09  E-value=25  Score=15.35  Aligned_cols=56  Identities=14%  Similarity=0.152  Sum_probs=35.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEE-EECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCC
Q ss_conf             59999999999996178987999-975323334420576660799847888222578862
Q gi|254781074|r  142 GWEQFTDSVIDLISNNHQNIVFM-LWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFF  200 (227)
Q Consensus       142 gW~~ft~~ii~~l~~~~~~vVfi-LwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~  200 (227)
                      ..+.|-+.+++.|.+.+..++++ -|+.--.+-  +++.-+..++ -.|||+|-.+||..
T Consensus        73 ~r~~~~~~l~~~l~~~~~Dliv~~g~~~il~~~--~l~~~~~~~i-N~HpslLP~~rG~~  129 (215)
T 3da8_A           73 SRDAWDVAITAATAAHEPDLVVSAGFMRILGPQ--FLSRFYGRTL-NTHPALLPAFPGTH  129 (215)
T ss_dssp             SHHHHHHHHHHHHHTTCCSEEEEEECCSCCCHH--HHHHHTTTEE-EEESSCTTSSCSTT
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEECCHHHHCCHH--HHHHHCCCCC-CCCCCCCCCCCCCC
T ss_conf             999999999999876099999984613346888--8642204875-07888798889988


No 21 
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), homoserine O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=33.03  E-value=7.7  Score=18.47  Aligned_cols=33  Identities=24%  Similarity=0.524  Sum_probs=25.0

Q ss_pred             HHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH
Q ss_conf             43259999999999996178987999975323334
Q gi|254781074|r  139 RGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKK  173 (227)
Q Consensus       139 ~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~  173 (227)
                      ..+ |++++ .+|+...+++..++++|||.+|.-.
T Consensus       130 v~y-w~eL~-~ii~wa~~~~~s~LgICwGaQa~~~  162 (312)
T 2h2w_A          130 VDY-WEELT-EIMEWSRHNVYSTMFICWAAQAGLY  162 (312)
T ss_dssp             STT-HHHHH-HHHHHHHHHEEEEEEETHHHHHHHH
T ss_pred             CHH-HHHHH-HHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf             638-99999-9999999709984877399999999


No 22 
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=29.24  E-value=28  Score=14.95  Aligned_cols=53  Identities=17%  Similarity=0.199  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEE-ECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCC
Q ss_conf             9999999999961789879999-7532333442057666079984788822257886
Q gi|254781074|r  144 EQFTDSVIDLISNNHQNIVFML-WGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGF  199 (227)
Q Consensus       144 ~~ft~~ii~~l~~~~~~vVfiL-wG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF  199 (227)
                      +.....+++.+...+..++++. |+.--.+  .+++..+..++ -.|||+|-.+||.
T Consensus        65 ~~~~~~l~~~l~~~~~Dliv~~g~~~ii~~--~il~~~~~~~i-N~HpslLP~~rG~  118 (209)
T 1meo_A           65 VEFDSAIDLVLEEFSIDIVCLAGFMRILSG--PFVQKWNGKML-NIHPSLLPSFKGS  118 (209)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEESCCSCCCH--HHHHHTTTSEE-EEESSSTTSSCSS
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCHHCCH--HHHHHHHCCCE-ECCCCCCCCCCCC
T ss_conf             888999999998619999999560010778--99987607958-7578667777786


No 23 
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=27.98  E-value=21  Score=15.76  Aligned_cols=38  Identities=21%  Similarity=0.280  Sum_probs=22.6

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHC
Q ss_conf             0003479863046999999999741888877401243220
Q gi|254781074|r   79 CFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGH  118 (227)
Q Consensus        79 aFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~  118 (227)
                      |.++...+++|+-|++|.+++.++.=-..|.  ||-.||-
T Consensus         2 ~m~s~~~i~IP~gl~~lL~~ftreVLR~qP~--di~~Faa   39 (50)
T 2kyg_A            2 AMGSMSHIQIPPGLTELLQGYTVEVLRQQPP--DLVEFAV   39 (50)
T ss_dssp             CCCTTCCCCCCTTHHHHHHHHHHHHHHHCCS--CHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC--HHHHHHH
T ss_conf             6653223679965699999999999998951--5999999


No 24 
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=22.23  E-value=26  Score=15.17  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=17.8

Q ss_pred             HHHHHHHCCCHHHCEEEEEECC
Q ss_conf             9999984299861779998118
Q gi|254781074|r   46 HYFRAFDITPFNKVKVVILGQD   67 (227)
Q Consensus        46 ~IF~af~~~p~~~vKVVIlGQD   67 (227)
                      .+++-|+.+|..++||+++|..
T Consensus         4 ~~~~k~~~~~~~~~kI~vvG~~   25 (181)
T 1fzq_A            4 SILRKLKSAPDQEVRILLLGLD   25 (181)
T ss_dssp             CHHHHCSSCCSSCEEEEEEEST
T ss_pred             HHHHHCCCCCCCEEEEEEECCC
T ss_conf             8997630589978799999999


No 25 
>3euf_A Uridine phosphorylase 1; nucleoside phosphorylase, uridine rescue, 5- benzylacyclouridine, alternative splicing, glycosyltransferase, transferase; HET: BAU; 1.90A {Homo sapiens} PDB: 3eue_A* 3ku4_A 3kuk_A* 3kvr_A 3kvy_A
Probab=22.02  E-value=23  Score=15.47  Aligned_cols=13  Identities=46%  Similarity=0.830  Sum_probs=11.7

Q ss_pred             HHHCEEEEEECCC
Q ss_conf             8617799981188
Q gi|254781074|r   56 FNKVKVVILGQDP   68 (227)
Q Consensus        56 ~~~vKVVIlGQDP   68 (227)
                      |.|||+|++|-||
T Consensus        68 fgDvk~V~~~GdP   80 (328)
T 3euf_A           68 FGDVKFVCVGGSP   80 (328)
T ss_dssp             HTTCCEEEEESCH
T ss_pred             HCCEEEEEECCCH
T ss_conf             1987799907998


Done!