Query         gi|254781074|ref|YP_003065487.1| uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 227
No_of_seqs    140 out of 1475
Neff          5.8 
Searched_HMMs 13730
Date          Wed Jun  1 11:20:49 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781074.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d3euga_ c.18.1.1 (A:) Uracil-D 100.0       0       0  596.6  21.0  218    9-226     2-222 (225)
  2 d2hxma1 c.18.1.1 (A:82-304) Ur 100.0       0       0  594.8  20.4  217    6-223     4-221 (223)
  3 d1laue_ c.18.1.1 (E:) Uracil-D 100.0       0       0  595.4  17.9  221    1-224     7-228 (228)
  4 d2j8xa1 c.18.1.1 (A:26-255) Ur 100.0       0       0  579.8  19.9  221    2-224     1-230 (230)
  5 d1oe4a_ c.18.1.3 (A:) Single-s  96.7   0.008 5.9E-07   35.4   9.2  146   57-217    51-240 (245)
  6 d1muga_ c.18.1.2 (A:) G:T/U mi  94.5    0.15 1.1E-05   27.5   9.3  125   57-195     8-146 (165)
  7 d1vk2a_ c.18.1.2 (A:) Thermoph  90.1    0.29 2.1E-05   25.8   5.4  116   57-197    37-169 (191)
  8 d1ui0a_ c.18.1.2 (A:) Thermoph  80.9     1.8 0.00013   21.0   5.6  116   57-196    31-161 (192)
  9 d1dxha2 c.78.1.1 (A:151-335) O  64.9     2.9 0.00021   19.6   3.4   57   55-114     2-69  (185)
 10 d1duvg2 c.78.1.1 (G:151-333) O  50.3     5.7 0.00041   17.8   2.9   57   55-114     2-69  (183)
 11 d2ghra1 c.23.16.8 (A:17-297) H  25.6     8.2  0.0006   16.8   0.4   33  139-173   102-134 (281)
 12 d2blna2 c.65.1.1 (A:1-203) Pol  23.8      21  0.0015   14.3   3.0   49  148-199    65-114 (203)
 13 d1meoa_ c.65.1.1 (A:) Glycinam  22.6      22  0.0016   14.2   3.5   53  144-199    65-118 (205)
 14 d1o1ya_ c.23.16.1 (A:) Hypothe  22.6      22  0.0016   14.2   3.8   90   58-171     3-97  (230)
 15 d2ozlb1 c.36.1.7 (B:0-191) E1-  22.4      15  0.0011   15.2   1.2   25   44-68      7-31  (192)
 16 d1jkxa_ c.65.1.1 (A:) Glycinam  21.3      23  0.0017   14.0   3.1   99   90-200    12-119 (209)

No 1  
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=596.62  Aligned_cols=218  Identities=53%  Similarity=0.981  Sum_probs=211.9

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             38999888726589999999999999779808588769999984299861779998118887752000710003479863
Q gi|254781074|r    9 SWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRI   88 (227)
Q Consensus         9 sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~   88 (227)
                      +|+++|.+|+.++||.+|.++|.+|+.++.+|||+.++|||||++||+++||||||||||||++|||+||||||++++++
T Consensus         2 sW~~~l~~e~~~~yf~~l~~~l~~e~~~~~~i~P~~~~IF~af~~~~~~~vKVVIlGQDPYh~~~~A~GLaFsv~~~~~~   81 (225)
T d3euga_           2 TWHDVLAEEKQQPHFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAI   81 (225)
T ss_dssp             CHHHHHTTGGGSHHHHHHHHHHHHHHHTTCCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTTCSSSTTCCCTTSCC
T ss_pred             CHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCEEEEEEECCCCCCC
T ss_conf             82899998976799999999999999859956798789999987069757569999657887555113641331589888


Q ss_pred             HHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             046999999999741-8888774012432208968860101123686044543259999999999996178987999975
Q gi|254781074|r   89 PPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWG  167 (227)
Q Consensus        89 p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG  167 (227)
                      |||||||||||++|+ ++..+.+|||+.||+|||||||++|||++|+|+||+++||++||+.+|++|+++++++||||||
T Consensus        82 PpSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLN~~LTv~~g~~~SH~~~GWe~ft~~ii~~l~~~~~~vvfiLwG  161 (225)
T d3euga_          82 PPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWG  161 (225)
T ss_dssp             CHHHHHHHHHHHHHSTTCCCCSCCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEEES
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             83499999999986389878999852035417657774359998575666211158999999999997367785999861


Q ss_pred             CHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC--CCCC
Q ss_conf             3233344205766607998478882225788627870899999999878897465--0889
Q gi|254781074|r  168 ASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNW--QIPL  226 (227)
Q Consensus       168 ~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW--~lp~  226 (227)
                      ++||+++.+|+.++|+||+++|||||||+||||||+||++||++|+++|++||||  .||.
T Consensus       162 ~~A~~~~~~i~~~~h~il~s~HPSPlsa~rgF~g~~~F~k~N~~L~~~~~~pIdW~~~~~~  222 (225)
T d3euga_         162 SHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDWMPVLPA  222 (225)
T ss_dssp             HHHHHHTTTSCTTTSEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCCSCCCCC
T ss_pred             EHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf             3066777651567876998279982214899878977999999999869998658887977


No 2  
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=0  Score=594.78  Aligned_cols=217  Identities=51%  Similarity=0.910  Sum_probs=210.9

Q ss_pred             CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCC
Q ss_conf             87338999888726589999999999999779808588769999984299861779998118887752000710003479
Q gi|254781074|r    6 IHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPLG   85 (227)
Q Consensus         6 i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~   85 (227)
                      ||++|+++|++|+.++|+.+|.++|.+|+.. .+|||+.++|||||++||+++|||||+||||||++|+|+||||||+++
T Consensus         4 ~~~sW~~~L~~e~~k~~~~~l~~~l~~e~~~-~~i~P~~~~IFraf~~~p~~~vKVVIlGQDPY~~~~~A~GlaFSv~~~   82 (223)
T d2hxma1           4 FGESWKKHLSGEFGKPYFIKLMGFVAEERKH-YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRP   82 (223)
T ss_dssp             SCHHHHHHHGGGTTSHHHHHHHHHHHHHHHH-SCEESCGGGTTGGGTSSCGGGCCEEEEECSCCCSTTTCCSSTTCCCTT
T ss_pred             CCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCEEEEEECCCC
T ss_conf             6767999999896659999999999999809-905188189999997379757469999526876678510033103688


Q ss_pred             CCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             863046999999999741-8888774012432208968860101123686044543259999999999996178987999
Q gi|254781074|r   86 IRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFM  164 (227)
Q Consensus        86 ~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfi  164 (227)
                      +++|||||||||||++|+ +...|.+|||++||+||||||||+|||++|+|+||+++||++||+.+|++|+++++++|||
T Consensus        83 ~~~ppSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfi  162 (223)
T d2hxma1          83 VPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFL  162 (223)
T ss_dssp             SCCCHHHHHHHHHHHHHCTTCCCCSSCCTHHHHHTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCCSCEEE
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             55684199999999876356878886613544207768886516787540247402689999999999986546783998


Q ss_pred             EECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             97532333442057666079984788822257886278708999999998788974650
Q gi|254781074|r  165 LWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQ  223 (227)
Q Consensus       165 LwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~  223 (227)
                      |||++||+++.+|+.++|+||+++|||||||+||||||+||++||++|+++|++||||.
T Consensus       163 LWG~~A~~~~~~i~~~~h~il~~~HPSPls~~~gF~~s~~F~k~N~~L~~~~~~~IdW~  221 (223)
T d2hxma1         163 LWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWK  221 (223)
T ss_dssp             EESHHHHHHTTTSCTTTSEEEEECCCSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCTT
T ss_pred             EEEEHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCE
T ss_conf             73232789988625689879982799721107798789879999999998698995880


No 3  
>d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex virus type 1 [TaxId: 10298]}
Probab=100.00  E-value=0  Score=595.39  Aligned_cols=221  Identities=38%  Similarity=0.658  Sum_probs=209.6

Q ss_pred             CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEE
Q ss_conf             98686873389998887265899999999999997798085887699999842998617799981188877520007100
Q gi|254781074|r    1 MEGVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCF   80 (227)
Q Consensus         1 l~~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaF   80 (227)
                      ++++.||++|+++|++|+.++|+.+|.+++.+++. +.+|||+.++|||||++||+++||||||||||||++|||+||||
T Consensus         7 ~~~~~i~~sW~~~L~~e~~~~~~~~l~~~l~~~~~-~~~i~P~~~~IF~af~~~~~~~vKVVIlGQDPYh~~~~A~GLaF   85 (228)
T d1laue_           7 RRVFLIDDAWRPLMEPELANPLTAHLLAEYNRRCQ-TEEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAF   85 (228)
T ss_dssp             HHHHTCCGGGHHHHGGGGGSHHHHHHHHHHHHHHH-HSCEESCGGGTTGGGTSSCGGGCCEEEEECSCCCSTTTCCSSSS
T ss_pred             HHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCEEECCCHHHHHHHHCCCHHHCEEEEEEECCCCCCCEEEEEEC
T ss_conf             88668986899999999731999999999999973-99278960899999982996363599996148876641311312


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             03479863046999999999741-88887740124322089688601011236860445432599999999999961789
Q gi|254781074|r   81 SVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQ  159 (227)
Q Consensus        81 sv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~  159 (227)
                      ||++++++|||||||||||.+|+ ++..+++|||+.||+||||||||+|||++|+|+||+++||++||+.+|++|+++++
T Consensus        86 sv~~~~~~ppSLrNI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~  165 (228)
T d1laue_          86 SVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRP  165 (228)
T ss_dssp             CCCTTSCCCHHHHHHHHHHHHHCTTCCCCSCCCCHHHHHTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             35888465067899999988644777678766543433287899960278877975676554399999999999975888


Q ss_pred             CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             87999975323334420576660799847888222578862787089999999987889746508
Q gi|254781074|r  160 NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQI  224 (227)
Q Consensus       160 ~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~l  224 (227)
                      ++||||||++||++.. ++..+|+||+++||||||| +||+||+||++||++|+++|++||||+|
T Consensus       166 ~vVfiLWG~~Aq~~~~-~~~~~h~il~~~HPSPlsa-~gF~g~~~F~~~N~~L~~~~~~pIdW~l  228 (228)
T d1laue_         166 GLVFMLWGTHAQNAIR-PDPRVHCVLKFSHPSPLSK-VPFGTCQHFLVANRYLETRSISPIDWSV  228 (228)
T ss_dssp             TCEEEEESHHHHHHCC-CCTTTSEEEEECCCSTTSS-SCGGGCCHHHHHHHHHHHTTCCCCCCCC
T ss_pred             CCEEEEEHHHHHHHHH-CCCCCCEEEEECCCCHHHC-CCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             8289973115777754-4799985999789982431-6889997599999999987999945839


No 4  
>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 10376]}
Probab=100.00  E-value=0  Score=579.84  Aligned_cols=221  Identities=41%  Similarity=0.790  Sum_probs=210.9

Q ss_pred             CCCCCCHHHHHHHH-HHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEE
Q ss_conf             86868733899988-87265899999999999997798085887699999842998617799981188877520007100
Q gi|254781074|r    2 EGVKIHESWKSLLE-NHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCF   80 (227)
Q Consensus         2 ~~l~i~~sW~~~L~-~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaF   80 (227)
                      |++.|+++|+++|+ .++.+.++.++.+++.+++ ++.+|||+.++|||||++||+++||||||||||||+ |||+||||
T Consensus         1 e~l~l~~~W~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~i~P~~~~iF~af~~~~~~~vKVVIlGQDPY~~-~~A~GLaF   78 (230)
T d2j8xa1           1 ENLLLPDLWLDFLQLSPIFQRKLAAVIACVRRLR-TQATVYPEEDMCMAWARFCDPSDIKVVILGQDPYHG-GQANGLAF   78 (230)
T ss_dssp             CCCCCCHHHHHHHTCCHHHHHHHHHHHHHHHHHH-TTSCEESCTTTTTGGGSSSCGGGCCEEEEECSCCSS-SCCCSSSS
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH-CCCEECCCHHHHHHHHHCCCHHHEEEEEEECCCCCC-CCEEEEEE
T ss_conf             9875474899987338766999999999999996-499668787999999874997683799985367878-75214432


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             03479863046999999999741-88887740124322089688601011236860445432599999999999961789
Q gi|254781074|r   81 SVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQ  159 (227)
Q Consensus        81 sv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~  159 (227)
                      ||+.++++|||||||||||++|+ ++..+.+|||+.||+||||||||+|||++|+|+||+++||+.||+.+|++|+++++
T Consensus        79 Sv~~~~~~PpSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLN~~LTv~~g~~~SH~~~gWe~ft~~~i~~l~~~~~  158 (230)
T d2j8xa1          79 SVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERLK  158 (230)
T ss_dssp             CCCTTSCCCHHHHHHHHHHHHHCTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             04678978942999999998645788877789868996388776630367747999983334748899999999972778


Q ss_pred             CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHH-------HCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             8799997532333442057666079984788822-------2578862787089999999987889746508
Q gi|254781074|r  160 NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPL-------SASHGFFGCRHFSKANRYLQEHGKTTVNWQI  224 (227)
Q Consensus       160 ~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPl-------s~~~gF~~~~~F~~~N~~L~~~~~~~IdW~l  224 (227)
                      ++||||||++||+++.+|+..+|+||+++|||||       |++||||||+||++||++|+++|++||||+|
T Consensus       159 ~vVfiLWG~~A~~~~~~i~~~~h~Il~s~HPSPls~~~~~~sa~~gF~g~~~F~k~N~~L~~~~~~pIdW~l  230 (230)
T d2j8xa1         159 ACVFMLWGAKAGDKASLINSKKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNFLREKGLGEIDWRL  230 (230)
T ss_dssp             SCEEEEESHHHHGGGGGSCTTTSEEEEECCSSGGGGGCCSSCSSCCSTTCCHHHHHHHHHHHTTCCCCCCCC
T ss_pred             CEEEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             879984014466666531577876996789994224666531148987888689999999987999923739


No 5  
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=96.68  E-value=0.008  Score=35.44  Aligned_cols=146  Identities=16%  Similarity=0.152  Sum_probs=82.9

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCC----------CC------------------CCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             6177999811888775200071000347----------98------------------6304699999999974188887
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPL----------GI------------------RIPPSLVNVYKELQEDVNFIPP  108 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~----------~~------------------~~p~SLrNI~Kel~~d~~~~~~  108 (227)
                      ...||++||++|=|.-+--+|+.|.-..          .+                  +--.|=+-++..+++-+|.  |
T Consensus        51 ~~~~~l~lGmNPGp~Gm~qTGVPFgd~~~vr~~l~I~~~v~~P~~~HPKRpi~Gl~~~r~EvSg~rlW~l~~~~~g~--p  128 (245)
T d1oe4a_          51 SKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLCGQ--P  128 (245)
T ss_dssp             SCCSEEEEESSCCTTTHHHHSSTTCCHHHHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHHSS--H
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--H
T ss_conf             99978998328987767652868687799887754777557885337777655656665401798999999998299--8


Q ss_pred             CCCHHHHHHCCCEEEECCH-HCC--CCCCCHH--------HHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCC
Q ss_conf             7401243220896886010-112--3686044--------5432599999999999961789879999753233344205
Q gi|254781074|r  109 THGFLEHWGHEGVLLLNAV-LTV--EEGRAAS--------HRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVL  177 (227)
Q Consensus       109 ~~g~L~~Wa~QGVLLLNt~-LTv--~~g~~~S--------H~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i  177 (227)
                      .     .-.+ -+++.|.+ |-.  +.|+.-.        -..+ .+.-.+.+.+.+..-+.. +.+--|+.|++..+..
T Consensus       129 e-----~ff~-~~fv~N~CPL~f~~e~GkN~TP~~l~~~~~~~l-~~~Cd~~L~~~v~~L~p~-~VIgVG~~Ae~ra~~a  200 (245)
T d1oe4a_         129 E-----TFFK-HCFVHNHCPLIFMNHSGKNLTPTDLPKAQRDTL-LEICDEALCQAVRVLGVK-LVIGVGRFSEQRARKA  200 (245)
T ss_dssp             H-----HHHT-TEEEEESCCCEEECTTCCEECGGGSCHHHHHHH-HHHHHHHHHHHHHHHTCS-EEEEESHHHHHHHHHH
T ss_pred             H-----HHHH-HHHEEECCCCCCCCCCCCCCCCHHCCHHHHHHH-HHHHHHHHHHHHHHCCCE-EEEEECHHHHHHHHHH
T ss_conf             9-----9876-550364178664588899898211578899999-999999999999754960-9998378999999998


Q ss_pred             -CC--CCCEEEEECCCCHHH--CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             -76--660799847888222--57886278708999999998788
Q gi|254781074|r  178 -DH--KRHLVLKAAHPSPLS--ASHGFFGCRHFSKANRYLQEHGK  217 (227)
Q Consensus       178 -~~--~~~~il~~~HPSPls--~~~gF~~~~~F~~~N~~L~~~~~  217 (227)
                       ..  -.-.|..-.||||.|  |+||+-     .++...|+++|.
T Consensus       201 l~~~g~~v~v~~i~HPSPasp~aN~~W~-----e~a~~~L~~~g~  240 (245)
T d1oe4a_         201 LMAEGIDVTVKGIMHPSPRNPQANKGWE-----GIVRGQLLELGV  240 (245)
T ss_dssp             HHHTTCSCEEEEECCCCTTCGGGTTTHH-----HHHHHHHHHHTC
T ss_pred             HHCCCCCCEEEECCCCCCCCHHCCCCCH-----HHHHHHHHHCCC
T ss_conf             6236998458647899998800005848-----999999998736


No 6  
>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug {Escherichia coli [TaxId: 562]}
Probab=94.53  E-value=0.15  Score=27.52  Aligned_cols=125  Identities=16%  Similarity=0.174  Sum_probs=66.9

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHCCCEEEECCHHCCCCC-
Q ss_conf             6177999811888775200071000347986304699999999974188887--7401243220896886010112368-
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPP--THGFLEHWGHEGVLLLNAVLTVEEG-  133 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~--~~g~L~~Wa~QGVLLLNt~LTv~~g-  133 (227)
                      .+.||+|+|+-|=.. ..+.|..|+=+ +..       ..+.|.. .+....  .-.+...--+.||-+.|.+-.+... 
T Consensus         8 p~~~vlivG~~PG~~-s~~~g~~f~~p-~n~-------fw~~l~~-~g~~~~~~~~~~~~~l~~~~i~~~d~~~~~~~~~   77 (165)
T d1muga_           8 PGLRVVFCGINPGLS-SAGTGFPFAHP-ANR-------FWKVIYQ-AGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQA   77 (165)
T ss_dssp             TTCSEEEEESSCCHH-HHHHSSTTCST-TCC-------HHHHHHH-TTSSSSCCCGGGGGGGGGGTEEEEESCCCCCSSG
T ss_pred             CCCCEEEEECCCCHH-HHHCCCCCCCC-HHH-------HHHHHHH-HHCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf             999889980798977-88559982684-889-------9999999-7378766777676443104468843766778888


Q ss_pred             C-CHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-HCCCC---------CCCEEEEECCCCHHHC
Q ss_conf             6-0445432599999999999961789879999753233344-20576---------6607998478882225
Q gi|254781074|r  134 R-AASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQ-DVLDH---------KRHLVLKAAHPSPLSA  195 (227)
Q Consensus       134 ~-~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~-~~i~~---------~~~~il~~~HPSPls~  195 (227)
                      . +..+.   -+.....+.+.|...++.+ .++-|+.|.+.. .....         ....++..+||||+.+
T Consensus        78 ~~~s~~E---i~~~~~~l~~~i~~~~Pki-i~~~G~~a~~~~~~~~~~~~g~q~~~~~~~~~~vlPspSp~~~  146 (165)
T d1muga_          78 NEVSKQE---LHAGGRKLIEKIEDYQPQA-LAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSR  146 (165)
T ss_dssp             GGSCHHH---HHHHHHHHHHHHHHHCCSE-EEEECHHHHHHHHTCCSCCSEEEEEEETTEEEEEECCCSTTSC
T ss_pred             CCCCHHH---HHHCCCCHHHHHHHHCCCE-EEECCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHH
T ss_conf             9999999---9865500899999849948-9982879999984677644454232249967899707986785


No 7  
>d1vk2a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermotoga maritima [TaxId: 2336]}
Probab=90.15  E-value=0.29  Score=25.78  Aligned_cols=116  Identities=22%  Similarity=0.273  Sum_probs=66.8

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCC--CC
Q ss_conf             6177999811888775200071000347986304699999999974188887740124322089688601011236--86
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEE--GR  134 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~--g~  134 (227)
                      .+.||+|+||-|=.. +..+|..|+-+.+    .-|++++.+    .|..           .+.|.+.|.+--...  ..
T Consensus        37 ~~a~imiVgeaPg~~-e~~~g~pf~g~aG----~~L~~~l~~----~gl~-----------~~~~~it~~~kc~pp~~~~   96 (191)
T d1vk2a_          37 LDTRIVFVGEGPGEE-EDKTGRPFVGRAG----MLLTELLRE----SGIR-----------REDVYICNVVKCRPPNNRT   96 (191)
T ss_dssp             TTCSEEEEESCCCHH-HHHHTCSSCSHHH----HHHHHHHHH----TTCC-----------GGGSEEEESCSSCCGGGCC
T ss_pred             CCCCEEEEECCHHHH-HHHHCCCCCHHHH----HHHHHHHHH----HHHC-----------CCCEEEEEEECCCCCCCCC
T ss_conf             986789996133566-7764765417789----999999886----3202-----------0472797333134764334


Q ss_pred             CH-HHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-HC------------CCC-CCCEEEEECCCCHHHCCC
Q ss_conf             04-45432599999999999961789879999753233344-20------------576-660799847888222578
Q gi|254781074|r  135 AA-SHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQ-DV------------LDH-KRHLVLKAAHPSPLSASH  197 (227)
Q Consensus       135 ~~-SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~-~~------------i~~-~~~~il~~~HPSPls~~~  197 (227)
                      +. +...- ..+|...-|+.+   ++ -|.++.|+.|.+.. ..            ++. ....++-+.|||.+-.+.
T Consensus        97 p~~~ei~~-C~p~L~~ei~~i---~P-kiii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~~pt~HPs~llr~p  169 (191)
T d1vk2a_          97 PTPEEQAA-CGHFLLAQIEII---NP-DVIVALGATALSFFVDGKKVSITKVRGNPIDWLGGKKVIPTFHPSYLLRNR  169 (191)
T ss_dssp             CCHHHHHH-HHHHHHHHHHHH---CC-SEEEEESHHHHHHTTTTCCCCHHHHTTCCEECGGGCEEEEECCHHHHHHCC
T ss_pred             CCHHHHHH-HHHHHHHHHHHH---CC-CEEEEECCHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHCC
T ss_conf             55589999-999888887652---03-013432608999986035565332367158868998799984988986597


No 8  
>d1ui0a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermus thermophilus [TaxId: 274]}
Probab=80.89  E-value=1.8  Score=20.97  Aligned_cols=116  Identities=19%  Similarity=0.187  Sum_probs=62.4

Q ss_pred             HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCC--CCC
Q ss_conf             617799981188877520007100034798630469999999997418888774012432208968860101123--686
Q gi|254781074|r   57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVE--EGR  134 (227)
Q Consensus        57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~--~g~  134 (227)
                      .+-||+|+|+-|=-. +..+|..|+-+.|    .=|++++.+    .|..           ++.|.+.|.+--..  ...
T Consensus        31 ~~a~imiVgeaPg~~-e~~~g~pf~G~aG----~lL~~~l~~----~gl~-----------~~~vyitn~vkc~p~~~~~   90 (192)
T d1ui0a_          31 PDAKLMIVGEGPGEE-EDKTGRPFVGKAG----QLLNRILEA----AGIP-----------REEVYITNIVKCRPPQNRA   90 (192)
T ss_dssp             TTCSEEEEESCCCHH-HHHHSCSSCSHHH----HHHHHHHHH----HTCC-----------GGGSEEEESCSSCCGGGCC
T ss_pred             CCCCEEEEECHHHHH-HHHHHHHHCCCHH----HHHHHHHHH----HCCC-----------HHHEEEEEEEEECCCCCCC
T ss_conf             998899996324555-6645301002268----899999997----1888-----------8896886026571344556


Q ss_pred             CHHHHHCCHH-HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCC------------CCCCCEEEEECCCCHHHCC
Q ss_conf             0445432599-999999999961789879999753233344205------------7666079984788822257
Q gi|254781074|r  135 AASHRGRGWE-QFTDSVIDLISNNHQNIVFMLWGASAQKKQDVL------------DHKRHLVLKAAHPSPLSAS  196 (227)
Q Consensus       135 ~~SH~~~gW~-~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i------------~~~~~~il~~~HPSPls~~  196 (227)
                      +....-.-.. +|....|+.+   ++ -|.+++|+.|.+..--.            +.....++-+.|||.|-.+
T Consensus        91 ~~~~e~~~C~~~~L~~ei~li---~P-~iii~lG~~a~~~~l~~~~~~~~~rG~~~~~~~~~~~~t~HPs~llrn  161 (192)
T d1ui0a_          91 PLPDEAKICTDKWLLKQIELI---AP-QIIVPLGAVAAEFFLGEKVSITKVRGKWYEWHGIKVFPMFHPAYLLRN  161 (192)
T ss_dssp             CCHHHHHHHHHHTHHHHHHHH---CC-SEEEEBSHHHHHHHHTSCCCHHHHTTCCEEETTEEECCBCCHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHHHHC---CC-CEEEECCCEEEEEECCCCCCCHHCCCCEEECCCCEEEEECCCHHHHHC
T ss_conf             781799999999999999743---06-599951310123320113530100582587189779998094787669


No 9  
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=64.93  E-value=2.9  Score=19.59  Aligned_cols=57  Identities=18%  Similarity=0.246  Sum_probs=37.6

Q ss_pred             CHHHCEEEEEECCCCCCCCCCCCC-----------EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf             986177999811888775200071-----------000347986304699999999974188887740124
Q gi|254781074|r   55 PFNKVKVVILGQDPYHNYGQAHGL-----------CFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLE  114 (227)
Q Consensus        55 p~~~vKVVIlGQDPY~~~g~A~GL-----------aFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~  114 (227)
                      |++++||+++| |. ++ +.|+=+           .|..|++...++.+....+++..+.+....-..++.
T Consensus         2 ~l~~lkia~vG-D~-~n-nV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   69 (185)
T d1dxha2           2 PLHDISYAYLG-DA-RN-NMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPK   69 (185)
T ss_dssp             CGGGCEEEEES-CC-SS-HHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHH
T ss_pred             CCCCCEEEEEC-CC-CC-HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
T ss_conf             88888899986-78-45-59999999999859979998667987513789999887641588189996746


No 10 
>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}
Probab=50.35  E-value=5.7  Score=17.81  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=37.4

Q ss_pred             CHHHCEEEEEECCCCCCCCCCCCC-----------EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf             986177999811888775200071-----------000347986304699999999974188887740124
Q gi|254781074|r   55 PFNKVKVVILGQDPYHNYGQAHGL-----------CFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLE  114 (227)
Q Consensus        55 p~~~vKVVIlGQDPY~~~g~A~GL-----------aFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~  114 (227)
                      +++++||+++| |. ++ +.|+=+           .|..|++...|+.+.+..++.....|....-..+++
T Consensus         2 ~~~~l~i~~vG-D~-~n-nv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~   69 (183)
T d1duvg2           2 AFNEMTLVYAG-DA-RN-NMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVA   69 (183)
T ss_dssp             CGGGCEEEEES-CT-TS-HHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHH
T ss_pred             CCCCCEEEEEC-CC-CC-HHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf             86787899993-78-24-89999999999849979997136763118999998888875188528984223


No 11 
>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}
Probab=25.60  E-value=8.2  Score=16.82  Aligned_cols=33  Identities=21%  Similarity=0.507  Sum_probs=23.1

Q ss_pred             HHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH
Q ss_conf             43259999999999996178987999975323334
Q gi|254781074|r  139 RGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKK  173 (227)
Q Consensus       139 ~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~  173 (227)
                      ..+ |+++.+ +++.+.+++..+++++||.+|.-.
T Consensus       102 v~y-~~eL~e-ii~~a~~~~~~~lgiCwGaQa~~~  134 (281)
T d2ghra1         102 VDY-WEELKR-IMEYSKTNVTSTLHICWGAQAGLY  134 (281)
T ss_dssp             STT-HHHHHH-HHHHHHHHEEEEEEETHHHHHHHH
T ss_pred             CCC-HHHHHH-HHHHHHHCCCCEEEECHHHHHHHH
T ss_conf             520-899999-999998658873887088999999


No 12 
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.76  E-value=21  Score=14.33  Aligned_cols=49  Identities=14%  Similarity=0.196  Sum_probs=23.4

Q ss_pred             HHHHHHHHCCCCCEEEEE-ECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCC
Q ss_conf             999999961789879999-7532333442057666079984788822257886
Q gi|254781074|r  148 DSVIDLISNNHQNIVFML-WGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGF  199 (227)
Q Consensus       148 ~~ii~~l~~~~~~vVfiL-wG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF  199 (227)
                      +.+++.+.+.+..++++. |+.--.  ..+++..+..++ .-|||+|-.+||.
T Consensus        65 ~~~~~~i~~~~~Dlii~~g~~~ii~--~~il~~~~~~~i-N~H~slLP~yrG~  114 (203)
T d2blna2          65 PLWVERIAQLSPDVIFSFYYRHLIY--DEILQLAPAGAF-NLHGSLLPKYRGR  114 (203)
T ss_dssp             HHHHHHHHHTCCSEEEEESCCSCCC--HHHHTTCTTCEE-EEESSCTTTTEES
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCHH--CCCCHHHHHHHH-HHHHHCCHHHHHH
T ss_conf             1234454320335146541110000--011012377898-8755222055443


No 13 
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.60  E-value=22  Score=14.19  Aligned_cols=53  Identities=17%  Similarity=0.179  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEEE-EECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCC
Q ss_conf             999999999996178987999-97532333442057666079984788822257886
Q gi|254781074|r  144 EQFTDSVIDLISNNHQNIVFM-LWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGF  199 (227)
Q Consensus       144 ~~ft~~ii~~l~~~~~~vVfi-LwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF  199 (227)
                      +.+.+.+++.|.+.+..++++ -|+.--.+  .+++..+..++ -.|||+|-.+||.
T Consensus        65 ~~~~~~l~~~l~~~~~Dliv~~g~~~il~~--~~l~~~~~~~i-N~HpslLP~~rG~  118 (205)
T d1meoa_          65 VEFDSAIDLVLEEFSIDIVCLAGFMRILSG--PFVQKWNGKML-NIHPSLLPSFKGS  118 (205)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEESCCSCCCH--HHHHHTTTSEE-EEESSSTTSSCSS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECHHCCCCH--HHHHHCCCCEE-ECCCCCCCHHHHH
T ss_conf             357899999985016543342002200687--88873257735-2376422111100


No 14 
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}
Probab=22.55  E-value=22  Score=14.18  Aligned_cols=90  Identities=14%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             HCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHCCCEEEECCHHCCCC
Q ss_conf             177999811888775200071000347986304699999999974188887740-----124322089688601011236
Q gi|254781074|r   58 KVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHG-----FLEHWGHEGVLLLNAVLTVEE  132 (227)
Q Consensus        58 ~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g-----~L~~Wa~QGVLLLNt~LTv~~  132 (227)
                      ..||+||=..++-++                 .++.+++++...++....+..+     +|+.  -.|++++-...++..
T Consensus         3 ~mrvli~qh~~~e~~-----------------G~~~~~l~~~g~~~~~~~~~~~~~~p~~l~~--~d~iii~Ggp~~~~d   63 (230)
T d1o1ya_           3 HVRVLAIRHVEIEDL-----------------GMMEDIFREKNWSFDYLDTPKGEKLERPLEE--YSLVVLLGGYMGAYE   63 (230)
T ss_dssp             CCEEEEECSSTTSSC-----------------THHHHHHHHTTCEEEEECGGGTCCCSSCGGG--CSEEEECCCSCCTTC
T ss_pred             CEEEEEEECCCCCCC-----------------HHHHHHHHHCCCEEEEEECCCCCCCCCCHHH--CCEEEECCCCCCCCC
T ss_conf             508999979999893-----------------7999999978997999978998768766433--788998299765564


Q ss_pred             CCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHH
Q ss_conf             860445432599999999999961789879999753233
Q gi|254781074|r  133 GRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQ  171 (227)
Q Consensus       133 g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~  171 (227)
                           -....|-.....+|+.+.+.+.++.-++||-++-
T Consensus        64 -----~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qll   97 (230)
T d1o1ya_          64 -----EEKYPFLKYEFQLIEEILKKEIPFLGICLGSQML   97 (230)
T ss_dssp             -----TTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHH
T ss_pred             -----CHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHH
T ss_conf             -----1004555789999999997311078760579999


No 15 
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.39  E-value=15  Score=15.19  Aligned_cols=25  Identities=20%  Similarity=0.213  Sum_probs=17.2

Q ss_pred             HHHHHHHHHCCCHHHCEEEEEECCC
Q ss_conf             7699999842998617799981188
Q gi|254781074|r   44 GSHYFRAFDITPFNKVKVVILGQDP   68 (227)
Q Consensus        44 ~~~IF~af~~~p~~~vKVVIlGQDP   68 (227)
                      ++-|-.|+...=-.|-+|||+|||=
T Consensus         7 ~eAi~~al~~~m~~d~~v~i~Gedv   31 (192)
T d2ozlb1           7 RDAINQGMDEELERDEKVFLLGEEV   31 (192)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEETTS
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             9999999999996598999992687


No 16 
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]}
Probab=21.28  E-value=23  Score=14.02  Aligned_cols=99  Identities=15%  Similarity=0.141  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHH-CCC-------CCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             4699999999974-188-------88774012432208968860101123686044543259999999999996178987
Q gi|254781074|r   90 PSLVNVYKELQED-VNF-------IPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNI  161 (227)
Q Consensus        90 ~SLrNI~Kel~~d-~~~-------~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v  161 (227)
                      .+|++|.+.++.. ++.       ..+....++.-.+.++.........  ...       =+.+-..+++.|.+.+..+
T Consensus        12 SnL~aLl~a~~~~~l~~~I~~Visn~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~l~~~~~Dl   82 (209)
T d1jkxa_          12 SNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASA--FDS-------REAYDRELIHEIDMYAPDV   82 (209)
T ss_dssp             HHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGG--CSS-------HHHHHHHHHHHHGGGCCSE
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEECCC--CCC-------CCCHHHHHHHHHHHCCCCE
T ss_conf             7799999998718999789999957987531201201343202320012--344-------3334899999998609988


Q ss_pred             EE-EEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCC
Q ss_conf             99-9975323334420576660799847888222578862
Q gi|254781074|r  162 VF-MLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFF  200 (227)
Q Consensus       162 Vf-iLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~  200 (227)
                      ++ +-|+..-.  ..+++..+..++ --|||+|-.+||..
T Consensus        83 iv~~g~~~il~--~~~l~~~~~~~i-N~HpslLP~~rG~~  119 (209)
T d1jkxa_          83 VVLAGFMRILS--PAFVSHYAGRLL-NIHPSLLPKYPGLH  119 (209)
T ss_dssp             EEESSCCSCCC--HHHHHHTTTSEE-EEESSCTTSCCSSC
T ss_pred             EEEEEEEEECC--HHHHCCCCCCEE-EECCCHHCCCCCCC
T ss_conf             99830568617--055302336779-70773110367767


Done!