Query gi|254781074|ref|YP_003065487.1| uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 227 No_of_seqs 140 out of 1475 Neff 5.8 Searched_HMMs 13730 Date Wed Jun 1 11:20:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781074.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d3euga_ c.18.1.1 (A:) Uracil-D 100.0 0 0 596.6 21.0 218 9-226 2-222 (225) 2 d2hxma1 c.18.1.1 (A:82-304) Ur 100.0 0 0 594.8 20.4 217 6-223 4-221 (223) 3 d1laue_ c.18.1.1 (E:) Uracil-D 100.0 0 0 595.4 17.9 221 1-224 7-228 (228) 4 d2j8xa1 c.18.1.1 (A:26-255) Ur 100.0 0 0 579.8 19.9 221 2-224 1-230 (230) 5 d1oe4a_ c.18.1.3 (A:) Single-s 96.7 0.008 5.9E-07 35.4 9.2 146 57-217 51-240 (245) 6 d1muga_ c.18.1.2 (A:) G:T/U mi 94.5 0.15 1.1E-05 27.5 9.3 125 57-195 8-146 (165) 7 d1vk2a_ c.18.1.2 (A:) Thermoph 90.1 0.29 2.1E-05 25.8 5.4 116 57-197 37-169 (191) 8 d1ui0a_ c.18.1.2 (A:) Thermoph 80.9 1.8 0.00013 21.0 5.6 116 57-196 31-161 (192) 9 d1dxha2 c.78.1.1 (A:151-335) O 64.9 2.9 0.00021 19.6 3.4 57 55-114 2-69 (185) 10 d1duvg2 c.78.1.1 (G:151-333) O 50.3 5.7 0.00041 17.8 2.9 57 55-114 2-69 (183) 11 d2ghra1 c.23.16.8 (A:17-297) H 25.6 8.2 0.0006 16.8 0.4 33 139-173 102-134 (281) 12 d2blna2 c.65.1.1 (A:1-203) Pol 23.8 21 0.0015 14.3 3.0 49 148-199 65-114 (203) 13 d1meoa_ c.65.1.1 (A:) Glycinam 22.6 22 0.0016 14.2 3.5 53 144-199 65-118 (205) 14 d1o1ya_ c.23.16.1 (A:) Hypothe 22.6 22 0.0016 14.2 3.8 90 58-171 3-97 (230) 15 d2ozlb1 c.36.1.7 (B:0-191) E1- 22.4 15 0.0011 15.2 1.2 25 44-68 7-31 (192) 16 d1jkxa_ c.65.1.1 (A:) Glycinam 21.3 23 0.0017 14.0 3.1 99 90-200 12-119 (209) No 1 >d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=596.62 Aligned_cols=218 Identities=53% Similarity=0.981 Sum_probs=211.9 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCCCCC Q ss_conf 38999888726589999999999999779808588769999984299861779998118887752000710003479863 Q gi|254781074|r 9 SWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPLGIRI 88 (227) Q Consensus 9 sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~ 88 (227) +|+++|.+|+.++||.+|.++|.+|+.++.+|||+.++|||||++||+++||||||||||||++|||+||||||++++++ T Consensus 2 sW~~~l~~e~~~~yf~~l~~~l~~e~~~~~~i~P~~~~IF~af~~~~~~~vKVVIlGQDPYh~~~~A~GLaFsv~~~~~~ 81 (225) T d3euga_ 2 TWHDVLAEEKQQPHFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAI 81 (225) T ss_dssp CHHHHHTTGGGSHHHHHHHHHHHHHHHTTCCEESCGGGTTHHHHHSCGGGCCEEEEESSCCCSTTTCSSSTTCCCTTSCC T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCEEEEEEECCCCCCC T ss_conf 82899998976799999999999999859956798789999987069757569999657887555113641331589888 Q ss_pred HHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 046999999999741-8888774012432208968860101123686044543259999999999996178987999975 Q gi|254781074|r 89 PPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWG 167 (227) Q Consensus 89 p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG 167 (227) |||||||||||++|+ ++..+.+|||+.||+|||||||++|||++|+|+||+++||++||+.+|++|+++++++|||||| T Consensus 82 PpSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLN~~LTv~~g~~~SH~~~GWe~ft~~ii~~l~~~~~~vvfiLwG 161 (225) T d3euga_ 82 PPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWG 161 (225) T ss_dssp CHHHHHHHHHHHHHSTTCCCCSCCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEEES T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 83499999999986389878999852035417657774359998575666211158999999999997367785999861 Q ss_pred CHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC--CCCC Q ss_conf 3233344205766607998478882225788627870899999999878897465--0889 Q gi|254781074|r 168 ASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNW--QIPL 226 (227) Q Consensus 168 ~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW--~lp~ 226 (227) ++||+++.+|+.++|+||+++|||||||+||||||+||++||++|+++|++|||| .||. T Consensus 162 ~~A~~~~~~i~~~~h~il~s~HPSPlsa~rgF~g~~~F~k~N~~L~~~~~~pIdW~~~~~~ 222 (225) T d3euga_ 162 SHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDWMPVLPA 222 (225) T ss_dssp HHHHHHTTTSCTTTSEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCCSCCCCC T ss_pred EHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCC T ss_conf 3066777651567876998279982214899878977999999999869998658887977 No 2 >d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} Probab=100.00 E-value=0 Score=594.78 Aligned_cols=217 Identities=51% Similarity=0.910 Sum_probs=210.9 Q ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEEECCCC Q ss_conf 87338999888726589999999999999779808588769999984299861779998118887752000710003479 Q gi|254781074|r 6 IHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCFSVPLG 85 (227) Q Consensus 6 i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaFsv~~~ 85 (227) ||++|+++|++|+.++|+.+|.++|.+|+.. .+|||+.++|||||++||+++|||||+||||||++|+|+||||||+++ T Consensus 4 ~~~sW~~~L~~e~~k~~~~~l~~~l~~e~~~-~~i~P~~~~IFraf~~~p~~~vKVVIlGQDPY~~~~~A~GlaFSv~~~ 82 (223) T d2hxma1 4 FGESWKKHLSGEFGKPYFIKLMGFVAEERKH-YTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRP 82 (223) T ss_dssp SCHHHHHHHGGGTTSHHHHHHHHHHHHHHHH-SCEESCGGGTTGGGTSSCGGGCCEEEEECSCCCSTTTCCSSTTCCCTT T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCEEEEEECCCC T ss_conf 6767999999896659999999999999809-905188189999997379757469999526876678510033103688 Q ss_pred CCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 863046999999999741-8888774012432208968860101123686044543259999999999996178987999 Q gi|254781074|r 86 IRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFM 164 (227) Q Consensus 86 ~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfi 164 (227) +++|||||||||||++|+ +...|.+|||++||+||||||||+|||++|+|+||+++||++||+.+|++|+++++++||| T Consensus 83 ~~~ppSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfi 162 (223) T d2hxma1 83 VPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFL 162 (223) T ss_dssp SCCCHHHHHHHHHHHHHCTTCCCCSSCCTHHHHHTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCCSCEEE T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 55684199999999876356878886613544207768886516787540247402689999999999986546783998 Q ss_pred EECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCC Q ss_conf 97532333442057666079984788822257886278708999999998788974650 Q gi|254781074|r 165 LWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQ 223 (227) Q Consensus 165 LwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~ 223 (227) |||++||+++.+|+.++|+||+++|||||||+||||||+||++||++|+++|++||||. T Consensus 163 LWG~~A~~~~~~i~~~~h~il~~~HPSPls~~~gF~~s~~F~k~N~~L~~~~~~~IdW~ 221 (223) T d2hxma1 163 LWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWK 221 (223) T ss_dssp EESHHHHHHTTTSCTTTSEEEEECCCSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCTT T ss_pred EEEEHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCE T ss_conf 73232789988625689879982799721107798789879999999998698995880 No 3 >d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex virus type 1 [TaxId: 10298]} Probab=100.00 E-value=0 Score=595.39 Aligned_cols=221 Identities=38% Similarity=0.658 Sum_probs=209.6 Q ss_pred CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEE Q ss_conf 98686873389998887265899999999999997798085887699999842998617799981188877520007100 Q gi|254781074|r 1 MEGVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCF 80 (227) Q Consensus 1 l~~l~i~~sW~~~L~~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaF 80 (227) ++++.||++|+++|++|+.++|+.+|.+++.+++. +.+|||+.++|||||++||+++||||||||||||++|||+|||| T Consensus 7 ~~~~~i~~sW~~~L~~e~~~~~~~~l~~~l~~~~~-~~~i~P~~~~IF~af~~~~~~~vKVVIlGQDPYh~~~~A~GLaF 85 (228) T d1laue_ 7 RRVFLIDDAWRPLMEPELANPLTAHLLAEYNRRCQ-TEEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAF 85 (228) T ss_dssp HHHHTCCGGGHHHHGGGGGSHHHHHHHHHHHHHHH-HSCEESCGGGTTGGGTSSCGGGCCEEEEECSCCCSTTTCCSSSS T ss_pred HHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCEEECCCHHHHHHHHCCCHHHCEEEEEEECCCCCCCEEEEEEC T ss_conf 88668986899999999731999999999999973-99278960899999982996363599996148876641311312 Q ss_pred ECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC Q ss_conf 03479863046999999999741-88887740124322089688601011236860445432599999999999961789 Q gi|254781074|r 81 SVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQ 159 (227) Q Consensus 81 sv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~ 159 (227) ||++++++|||||||||||.+|+ ++..+++|||+.||+||||||||+|||++|+|+||+++||++||+.+|++|+++++ T Consensus 86 sv~~~~~~ppSLrNI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gWe~ft~~ii~~l~~~~~ 165 (228) T d1laue_ 86 SVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRP 165 (228) T ss_dssp CCCTTSCCCHHHHHHHHHHHHHCTTCCCCSCCCCHHHHHTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCT T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 35888465067899999988644777678766543433287899960278877975676554399999999999975888 Q ss_pred CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC Q ss_conf 87999975323334420576660799847888222578862787089999999987889746508 Q gi|254781074|r 160 NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQI 224 (227) Q Consensus 160 ~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~~~~~F~~~N~~L~~~~~~~IdW~l 224 (227) ++||||||++||++.. ++..+|+||+++||||||| +||+||+||++||++|+++|++||||+| T Consensus 166 ~vVfiLWG~~Aq~~~~-~~~~~h~il~~~HPSPlsa-~gF~g~~~F~~~N~~L~~~~~~pIdW~l 228 (228) T d1laue_ 166 GLVFMLWGTHAQNAIR-PDPRVHCVLKFSHPSPLSK-VPFGTCQHFLVANRYLETRSISPIDWSV 228 (228) T ss_dssp TCEEEEESHHHHHHCC-CCTTTSEEEEECCCSTTSS-SCGGGCCHHHHHHHHHHHTTCCCCCCCC T ss_pred CCEEEEEHHHHHHHHH-CCCCCCEEEEECCCCHHHC-CCCCCCCHHHHHHHHHHHCCCCCCCCCC T ss_conf 8289973115777754-4799985999789982431-6889997599999999987999945839 No 4 >d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr virus [TaxId: 10376]} Probab=100.00 E-value=0 Score=579.84 Aligned_cols=221 Identities=41% Similarity=0.790 Sum_probs=210.9 Q ss_pred CCCCCCHHHHHHHH-HHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCHHHCEEEEEECCCCCCCCCCCCCEE Q ss_conf 86868733899988-87265899999999999997798085887699999842998617799981188877520007100 Q gi|254781074|r 2 EGVKIHESWKSLLE-NHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYHNYGQAHGLCF 80 (227) Q Consensus 2 ~~l~i~~sW~~~L~-~e~~~~~~~~i~~~l~~e~~~~~~i~P~~~~IF~af~~~p~~~vKVVIlGQDPY~~~g~A~GLaF 80 (227) |++.|+++|+++|+ .++.+.++.++.+++.+++ ++.+|||+.++|||||++||+++||||||||||||+ |||+|||| T Consensus 1 e~l~l~~~W~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~i~P~~~~iF~af~~~~~~~vKVVIlGQDPY~~-~~A~GLaF 78 (230) T d2j8xa1 1 ENLLLPDLWLDFLQLSPIFQRKLAAVIACVRRLR-TQATVYPEEDMCMAWARFCDPSDIKVVILGQDPYHG-GQANGLAF 78 (230) T ss_dssp CCCCCCHHHHHHHTCCHHHHHHHHHHHHHHHHHH-TTSCEESCTTTTTGGGSSSCGGGCCEEEEECSCCSS-SCCCSSSS T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH-CCCEECCCHHHHHHHHHCCCHHHEEEEEEECCCCCC-CCEEEEEE T ss_conf 9875474899987338766999999999999996-499668787999999874997683799985367878-75214432 Q ss_pred ECCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC Q ss_conf 03479863046999999999741-88887740124322089688601011236860445432599999999999961789 Q gi|254781074|r 81 SVPLGIRIPPSLVNVYKELQEDV-NFIPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQ 159 (227) Q Consensus 81 sv~~~~~~p~SLrNI~Kel~~d~-~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~ 159 (227) ||+.++++|||||||||||++|+ ++..+.+|||+.||+||||||||+|||++|+|+||+++||+.||+.+|++|+++++ T Consensus 79 Sv~~~~~~PpSL~NI~kel~~d~~~~~~~~~g~L~~Wa~QGVLLLN~~LTv~~g~~~SH~~~gWe~ft~~~i~~l~~~~~ 158 (230) T d2j8xa1 79 SVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERLK 158 (230) T ss_dssp CCCTTSCCCHHHHHHHHHHHHHCTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCS T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 04678978942999999998645788877789868996388776630367747999983334748899999999972778 Q ss_pred CEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHH-------HCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC Q ss_conf 8799997532333442057666079984788822-------2578862787089999999987889746508 Q gi|254781074|r 160 NIVFMLWGASAQKKQDVLDHKRHLVLKAAHPSPL-------SASHGFFGCRHFSKANRYLQEHGKTTVNWQI 224 (227) Q Consensus 160 ~vVfiLwG~~A~~~~~~i~~~~~~il~~~HPSPl-------s~~~gF~~~~~F~~~N~~L~~~~~~~IdW~l 224 (227) ++||||||++||+++.+|+..+|+||+++||||| |++||||||+||++||++|+++|++||||+| T Consensus 159 ~vVfiLWG~~A~~~~~~i~~~~h~Il~s~HPSPls~~~~~~sa~~gF~g~~~F~k~N~~L~~~~~~pIdW~l 230 (230) T d2j8xa1 159 ACVFMLWGAKAGDKASLINSKKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNFLREKGLGEIDWRL 230 (230) T ss_dssp SCEEEEESHHHHGGGGGSCTTTSEEEEECCSSGGGGGCCSSCSSCCSTTCCHHHHHHHHHHHTTCCCCCCCC T ss_pred CEEEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC T ss_conf 879984014466666531577876996789994224666531148987888689999999987999923739 No 5 >d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Probab=96.68 E-value=0.008 Score=35.44 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=82.9 Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCC----------CC------------------CCHHHHHHHHHHHHHHCCCCCC Q ss_conf 6177999811888775200071000347----------98------------------6304699999999974188887 Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPL----------GI------------------RIPPSLVNVYKELQEDVNFIPP 108 (227) Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~----------~~------------------~~p~SLrNI~Kel~~d~~~~~~ 108 (227) ...||++||++|=|.-+--+|+.|.-.. .+ +--.|=+-++..+++-+|. | T Consensus 51 ~~~~~l~lGmNPGp~Gm~qTGVPFgd~~~vr~~l~I~~~v~~P~~~HPKRpi~Gl~~~r~EvSg~rlW~l~~~~~g~--p 128 (245) T d1oe4a_ 51 SKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLCGQ--P 128 (245) T ss_dssp SCCSEEEEESSCCTTTHHHHSSTTCCHHHHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHHSS--H T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--H T ss_conf 99978998328987767652868687799887754777557885337777655656665401798999999998299--8 Q ss_pred CCCHHHHHHCCCEEEECCH-HCC--CCCCCHH--------HHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCC Q ss_conf 7401243220896886010-112--3686044--------5432599999999999961789879999753233344205 Q gi|254781074|r 109 THGFLEHWGHEGVLLLNAV-LTV--EEGRAAS--------HRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVL 177 (227) Q Consensus 109 ~~g~L~~Wa~QGVLLLNt~-LTv--~~g~~~S--------H~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i 177 (227) . .-.+ -+++.|.+ |-. +.|+.-. -..+ .+.-.+.+.+.+..-+.. +.+--|+.|++..+.. T Consensus 129 e-----~ff~-~~fv~N~CPL~f~~e~GkN~TP~~l~~~~~~~l-~~~Cd~~L~~~v~~L~p~-~VIgVG~~Ae~ra~~a 200 (245) T d1oe4a_ 129 E-----TFFK-HCFVHNHCPLIFMNHSGKNLTPTDLPKAQRDTL-LEICDEALCQAVRVLGVK-LVIGVGRFSEQRARKA 200 (245) T ss_dssp H-----HHHT-TEEEEESCCCEEECTTCCEECGGGSCHHHHHHH-HHHHHHHHHHHHHHHTCS-EEEEESHHHHHHHHHH T ss_pred H-----HHHH-HHHEEECCCCCCCCCCCCCCCCHHCCHHHHHHH-HHHHHHHHHHHHHHCCCE-EEEEECHHHHHHHHHH T ss_conf 9-----9876-550364178664588899898211578899999-999999999999754960-9998378999999998 Q ss_pred -CC--CCCEEEEECCCCHHH--CCCCCCCCCHHHHHHHHHHHCCC Q ss_conf -76--660799847888222--57886278708999999998788 Q gi|254781074|r 178 -DH--KRHLVLKAAHPSPLS--ASHGFFGCRHFSKANRYLQEHGK 217 (227) Q Consensus 178 -~~--~~~~il~~~HPSPls--~~~gF~~~~~F~~~N~~L~~~~~ 217 (227) .. -.-.|..-.||||.| |+||+- .++...|+++|. T Consensus 201 l~~~g~~v~v~~i~HPSPasp~aN~~W~-----e~a~~~L~~~g~ 240 (245) T d1oe4a_ 201 LMAEGIDVTVKGIMHPSPRNPQANKGWE-----GIVRGQLLELGV 240 (245) T ss_dssp HHHTTCSCEEEEECCCCTTCGGGTTTHH-----HHHHHHHHHHTC T ss_pred HHCCCCCCEEEECCCCCCCCHHCCCCCH-----HHHHHHHHHCCC T ss_conf 6236998458647899998800005848-----999999998736 No 6 >d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug {Escherichia coli [TaxId: 562]} Probab=94.53 E-value=0.15 Score=27.52 Aligned_cols=125 Identities=16% Similarity=0.174 Sum_probs=66.9 Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHCCCEEEECCHHCCCCC- Q ss_conf 6177999811888775200071000347986304699999999974188887--7401243220896886010112368- Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPP--THGFLEHWGHEGVLLLNAVLTVEEG- 133 (227) Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~--~~g~L~~Wa~QGVLLLNt~LTv~~g- 133 (227) .+.||+|+|+-|=.. ..+.|..|+=+ +.. ..+.|.. .+.... .-.+...--+.||-+.|.+-.+... T Consensus 8 p~~~vlivG~~PG~~-s~~~g~~f~~p-~n~-------fw~~l~~-~g~~~~~~~~~~~~~l~~~~i~~~d~~~~~~~~~ 77 (165) T d1muga_ 8 PGLRVVFCGINPGLS-SAGTGFPFAHP-ANR-------FWKVIYQ-AGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQA 77 (165) T ss_dssp TTCSEEEEESSCCHH-HHHHSSTTCST-TCC-------HHHHHHH-TTSSSSCCCGGGGGGGGGGTEEEEESCCCCCSSG T ss_pred CCCCEEEEECCCCHH-HHHCCCCCCCC-HHH-------HHHHHHH-HHCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCC T ss_conf 999889980798977-88559982684-889-------9999999-7378766777676443104468843766778888 Q ss_pred C-CHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-HCCCC---------CCCEEEEECCCCHHHC Q ss_conf 6-0445432599999999999961789879999753233344-20576---------6607998478882225 Q gi|254781074|r 134 R-AASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQ-DVLDH---------KRHLVLKAAHPSPLSA 195 (227) Q Consensus 134 ~-~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~-~~i~~---------~~~~il~~~HPSPls~ 195 (227) . +..+. -+.....+.+.|...++.+ .++-|+.|.+.. ..... ....++..+||||+.+ T Consensus 78 ~~~s~~E---i~~~~~~l~~~i~~~~Pki-i~~~G~~a~~~~~~~~~~~~g~q~~~~~~~~~~vlPspSp~~~ 146 (165) T d1muga_ 78 NEVSKQE---LHAGGRKLIEKIEDYQPQA-LAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSR 146 (165) T ss_dssp GGSCHHH---HHHHHHHHHHHHHHHCCSE-EEEECHHHHHHHHTCCSCCSEEEEEEETTEEEEEECCCSTTSC T ss_pred CCCCHHH---HHHCCCCHHHHHHHHCCCE-EEECCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHH T ss_conf 9999999---9865500899999849948-9982879999984677644454232249967899707986785 No 7 >d1vk2a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermotoga maritima [TaxId: 2336]} Probab=90.15 E-value=0.29 Score=25.78 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=66.8 Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCCC--CC Q ss_conf 6177999811888775200071000347986304699999999974188887740124322089688601011236--86 Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVEE--GR 134 (227) Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~~--g~ 134 (227) .+.||+|+||-|=.. +..+|..|+-+.+ .-|++++.+ .|.. .+.|.+.|.+--... .. T Consensus 37 ~~a~imiVgeaPg~~-e~~~g~pf~g~aG----~~L~~~l~~----~gl~-----------~~~~~it~~~kc~pp~~~~ 96 (191) T d1vk2a_ 37 LDTRIVFVGEGPGEE-EDKTGRPFVGRAG----MLLTELLRE----SGIR-----------REDVYICNVVKCRPPNNRT 96 (191) T ss_dssp TTCSEEEEESCCCHH-HHHHTCSSCSHHH----HHHHHHHHH----TTCC-----------GGGSEEEESCSSCCGGGCC T ss_pred CCCCEEEEECCHHHH-HHHHCCCCCHHHH----HHHHHHHHH----HHHC-----------CCCEEEEEEECCCCCCCCC T ss_conf 986789996133566-7764765417789----999999886----3202-----------0472797333134764334 Q ss_pred CH-HHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-HC------------CCC-CCCEEEEECCCCHHHCCC Q ss_conf 04-45432599999999999961789879999753233344-20------------576-660799847888222578 Q gi|254781074|r 135 AA-SHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQ-DV------------LDH-KRHLVLKAAHPSPLSASH 197 (227) Q Consensus 135 ~~-SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~-~~------------i~~-~~~~il~~~HPSPls~~~ 197 (227) +. +...- ..+|...-|+.+ ++ -|.++.|+.|.+.. .. ++. ....++-+.|||.+-.+. T Consensus 97 p~~~ei~~-C~p~L~~ei~~i---~P-kiii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~~pt~HPs~llr~p 169 (191) T d1vk2a_ 97 PTPEEQAA-CGHFLLAQIEII---NP-DVIVALGATALSFFVDGKKVSITKVRGNPIDWLGGKKVIPTFHPSYLLRNR 169 (191) T ss_dssp CCHHHHHH-HHHHHHHHHHHH---CC-SEEEEESHHHHHHTTTTCCCCHHHHTTCCEECGGGCEEEEECCHHHHHHCC T ss_pred CCHHHHHH-HHHHHHHHHHHH---CC-CEEEEECCHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHCC T ss_conf 55589999-999888887652---03-013432608999986035565332367158868998799984988986597 No 8 >d1ui0a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermus thermophilus [TaxId: 274]} Probab=80.89 E-value=1.8 Score=20.97 Aligned_cols=116 Identities=19% Similarity=0.187 Sum_probs=62.4 Q ss_pred HHCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCHHCCC--CCC Q ss_conf 617799981188877520007100034798630469999999997418888774012432208968860101123--686 Q gi|254781074|r 57 NKVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEGVLLLNAVLTVE--EGR 134 (227) Q Consensus 57 ~~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~~Wa~QGVLLLNt~LTv~--~g~ 134 (227) .+-||+|+|+-|=-. +..+|..|+-+.| .=|++++.+ .|.. ++.|.+.|.+--.. ... T Consensus 31 ~~a~imiVgeaPg~~-e~~~g~pf~G~aG----~lL~~~l~~----~gl~-----------~~~vyitn~vkc~p~~~~~ 90 (192) T d1ui0a_ 31 PDAKLMIVGEGPGEE-EDKTGRPFVGKAG----QLLNRILEA----AGIP-----------REEVYITNIVKCRPPQNRA 90 (192) T ss_dssp TTCSEEEEESCCCHH-HHHHSCSSCSHHH----HHHHHHHHH----HTCC-----------GGGSEEEESCSSCCGGGCC T ss_pred CCCCEEEEECHHHHH-HHHHHHHHCCCHH----HHHHHHHHH----HCCC-----------HHHEEEEEEEEECCCCCCC T ss_conf 998899996324555-6645301002268----899999997----1888-----------8896886026571344556 Q ss_pred CHHHHHCCHH-HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCC------------CCCCCEEEEECCCCHHHCC Q ss_conf 0445432599-999999999961789879999753233344205------------7666079984788822257 Q gi|254781074|r 135 AASHRGRGWE-QFTDSVIDLISNNHQNIVFMLWGASAQKKQDVL------------DHKRHLVLKAAHPSPLSAS 196 (227) Q Consensus 135 ~~SH~~~gW~-~ft~~ii~~l~~~~~~vVfiLwG~~A~~~~~~i------------~~~~~~il~~~HPSPls~~ 196 (227) +....-.-.. +|....|+.+ ++ -|.+++|+.|.+..--. +.....++-+.|||.|-.+ T Consensus 91 ~~~~e~~~C~~~~L~~ei~li---~P-~iii~lG~~a~~~~l~~~~~~~~~rG~~~~~~~~~~~~t~HPs~llrn 161 (192) T d1ui0a_ 91 PLPDEAKICTDKWLLKQIELI---AP-QIIVPLGAVAAEFFLGEKVSITKVRGKWYEWHGIKVFPMFHPAYLLRN 161 (192) T ss_dssp CCHHHHHHHHHHTHHHHHHHH---CC-SEEEEBSHHHHHHHHTSCCCHHHHTTCCEEETTEEECCBCCHHHHHHS T ss_pred CCCHHHHHHHHHHHHHHHHHC---CC-CEEEECCCEEEEEECCCCCCCHHCCCCEEECCCCEEEEECCCHHHHHC T ss_conf 781799999999999999743---06-599951310123320113530100582587189779998094787669 No 9 >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} Probab=64.93 E-value=2.9 Score=19.59 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=37.6 Q ss_pred CHHHCEEEEEECCCCCCCCCCCCC-----------EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH Q ss_conf 986177999811888775200071-----------000347986304699999999974188887740124 Q gi|254781074|r 55 PFNKVKVVILGQDPYHNYGQAHGL-----------CFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLE 114 (227) Q Consensus 55 p~~~vKVVIlGQDPY~~~g~A~GL-----------aFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~ 114 (227) |++++||+++| |. ++ +.|+=+ .|..|++...++.+....+++..+.+....-..++. T Consensus 2 ~l~~lkia~vG-D~-~n-nV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 69 (185) T d1dxha2 2 PLHDISYAYLG-DA-RN-NMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPK 69 (185) T ss_dssp CGGGCEEEEES-CC-SS-HHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHH T ss_pred CCCCCEEEEEC-CC-CC-HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH T ss_conf 88888899986-78-45-59999999999859979998667987513789999887641588189996746 No 10 >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} Probab=50.35 E-value=5.7 Score=17.81 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=37.4 Q ss_pred CHHHCEEEEEECCCCCCCCCCCCC-----------EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH Q ss_conf 986177999811888775200071-----------000347986304699999999974188887740124 Q gi|254781074|r 55 PFNKVKVVILGQDPYHNYGQAHGL-----------CFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLE 114 (227) Q Consensus 55 p~~~vKVVIlGQDPY~~~g~A~GL-----------aFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g~L~ 114 (227) +++++||+++| |. ++ +.|+=+ .|..|++...|+.+.+..++.....|....-..+++ T Consensus 2 ~~~~l~i~~vG-D~-~n-nv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ 69 (183) T d1duvg2 2 AFNEMTLVYAG-DA-RN-NMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVA 69 (183) T ss_dssp CGGGCEEEEES-CT-TS-HHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHH T ss_pred CCCCCEEEEEC-CC-CC-HHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECHH T ss_conf 86787899993-78-24-89999999999849979997136763118999998888875188528984223 No 11 >d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} Probab=25.60 E-value=8.2 Score=16.82 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=23.1 Q ss_pred HHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH Q ss_conf 43259999999999996178987999975323334 Q gi|254781074|r 139 RGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKK 173 (227) Q Consensus 139 ~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~~~ 173 (227) ..+ |+++.+ +++.+.+++..+++++||.+|.-. T Consensus 102 v~y-~~eL~e-ii~~a~~~~~~~lgiCwGaQa~~~ 134 (281) T d2ghra1 102 VDY-WEELKR-IMEYSKTNVTSTLHICWGAQAGLY 134 (281) T ss_dssp STT-HHHHHH-HHHHHHHHEEEEEEETHHHHHHHH T ss_pred CCC-HHHHHH-HHHHHHHCCCCEEEECHHHHHHHH T ss_conf 520-899999-999998658873887088999999 No 12 >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=23.76 E-value=21 Score=14.33 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=23.4 Q ss_pred HHHHHHHHCCCCCEEEEE-ECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCC Q ss_conf 999999961789879999-7532333442057666079984788822257886 Q gi|254781074|r 148 DSVIDLISNNHQNIVFML-WGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGF 199 (227) Q Consensus 148 ~~ii~~l~~~~~~vVfiL-wG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF 199 (227) +.+++.+.+.+..++++. |+.--. ..+++..+..++ .-|||+|-.+||. T Consensus 65 ~~~~~~i~~~~~Dlii~~g~~~ii~--~~il~~~~~~~i-N~H~slLP~yrG~ 114 (203) T d2blna2 65 PLWVERIAQLSPDVIFSFYYRHLIY--DEILQLAPAGAF-NLHGSLLPKYRGR 114 (203) T ss_dssp HHHHHHHHHTCCSEEEEESCCSCCC--HHHHTTCTTCEE-EEESSCTTTTEES T ss_pred HHHHHHHHHHCCCCEEEEECCCCHH--CCCCHHHHHHHH-HHHHHCCHHHHHH T ss_conf 1234454320335146541110000--011012377898-8755222055443 No 13 >d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Probab=22.60 E-value=22 Score=14.19 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=30.4 Q ss_pred HHHHHHHHHHHHCCCCCEEEE-EECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCC Q ss_conf 999999999996178987999-97532333442057666079984788822257886 Q gi|254781074|r 144 EQFTDSVIDLISNNHQNIVFM-LWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGF 199 (227) Q Consensus 144 ~~ft~~ii~~l~~~~~~vVfi-LwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF 199 (227) +.+.+.+++.|.+.+..++++ -|+.--.+ .+++..+..++ -.|||+|-.+||. T Consensus 65 ~~~~~~l~~~l~~~~~Dliv~~g~~~il~~--~~l~~~~~~~i-N~HpslLP~~rG~ 118 (205) T d1meoa_ 65 VEFDSAIDLVLEEFSIDIVCLAGFMRILSG--PFVQKWNGKML-NIHPSLLPSFKGS 118 (205) T ss_dssp HHHHHHHHHHHHHTTCCEEEEESCCSCCCH--HHHHHTTTSEE-EEESSSTTSSCSS T ss_pred HHHHHHHHHHHHHCCCCEEEEECHHCCCCH--HHHHHCCCCEE-ECCCCCCCHHHHH T ss_conf 357899999985016543342002200687--88873257735-2376422111100 No 14 >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} Probab=22.55 E-value=22 Score=14.18 Aligned_cols=90 Identities=14% Similarity=0.231 Sum_probs=48.9 Q ss_pred HCEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHCCCEEEECCHHCCCC Q ss_conf 177999811888775200071000347986304699999999974188887740-----124322089688601011236 Q gi|254781074|r 58 KVKVVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHG-----FLEHWGHEGVLLLNAVLTVEE 132 (227) Q Consensus 58 ~vKVVIlGQDPY~~~g~A~GLaFsv~~~~~~p~SLrNI~Kel~~d~~~~~~~~g-----~L~~Wa~QGVLLLNt~LTv~~ 132 (227) ..||+||=..++-++ .++.+++++...++....+..+ +|+. -.|++++-...++.. T Consensus 3 ~mrvli~qh~~~e~~-----------------G~~~~~l~~~g~~~~~~~~~~~~~~p~~l~~--~d~iii~Ggp~~~~d 63 (230) T d1o1ya_ 3 HVRVLAIRHVEIEDL-----------------GMMEDIFREKNWSFDYLDTPKGEKLERPLEE--YSLVVLLGGYMGAYE 63 (230) T ss_dssp CCEEEEECSSTTSSC-----------------THHHHHHHHTTCEEEEECGGGTCCCSSCGGG--CSEEEECCCSCCTTC T ss_pred CEEEEEEECCCCCCC-----------------HHHHHHHHHCCCEEEEEECCCCCCCCCCHHH--CCEEEECCCCCCCCC T ss_conf 508999979999893-----------------7999999978997999978998768766433--788998299765564 Q ss_pred CCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCHHH Q ss_conf 860445432599999999999961789879999753233 Q gi|254781074|r 133 GRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQ 171 (227) Q Consensus 133 g~~~SH~~~gW~~ft~~ii~~l~~~~~~vVfiLwG~~A~ 171 (227) -....|-.....+|+.+.+.+.++.-++||-++- T Consensus 64 -----~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qll 97 (230) T d1o1ya_ 64 -----EEKYPFLKYEFQLIEEILKKEIPFLGICLGSQML 97 (230) T ss_dssp -----TTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHH T ss_pred -----CHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHH T ss_conf -----1004555789999999997311078760579999 No 15 >d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Probab=22.39 E-value=15 Score=15.19 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=17.2 Q ss_pred HHHHHHHHHCCCHHHCEEEEEECCC Q ss_conf 7699999842998617799981188 Q gi|254781074|r 44 GSHYFRAFDITPFNKVKVVILGQDP 68 (227) Q Consensus 44 ~~~IF~af~~~p~~~vKVVIlGQDP 68 (227) ++-|-.|+...=-.|-+|||+|||= T Consensus 7 ~eAi~~al~~~m~~d~~v~i~Gedv 31 (192) T d2ozlb1 7 RDAINQGMDEELERDEKVFLLGEEV 31 (192) T ss_dssp HHHHHHHHHHHHHHCTTEEEEETTS T ss_pred HHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 9999999999996598999992687 No 16 >d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Probab=21.28 E-value=23 Score=14.02 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=46.1 Q ss_pred HHHHHHHHHHHHH-CCC-------CCCCCCHHHHHHCCCEEEECCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCE Q ss_conf 4699999999974-188-------88774012432208968860101123686044543259999999999996178987 Q gi|254781074|r 90 PSLVNVYKELQED-VNF-------IPPTHGFLEHWGHEGVLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNI 161 (227) Q Consensus 90 ~SLrNI~Kel~~d-~~~-------~~~~~g~L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~gW~~ft~~ii~~l~~~~~~v 161 (227) .+|++|.+.++.. ++. ..+....++.-.+.++......... ... =+.+-..+++.|.+.+..+ T Consensus 12 SnL~aLl~a~~~~~l~~~I~~Visn~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~l~~~~~Dl 82 (209) T d1jkxa_ 12 SNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASA--FDS-------REAYDRELIHEIDMYAPDV 82 (209) T ss_dssp HHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGG--CSS-------HHHHHHHHHHHHGGGCCSE T ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCEEEEECCC--CCC-------CCCHHHHHHHHHHHCCCCE T ss_conf 7799999998718999789999957987531201201343202320012--344-------3334899999998609988 Q ss_pred EE-EEECCHHHHHHHCCCCCCCEEEEECCCCHHHCCCCCC Q ss_conf 99-9975323334420576660799847888222578862 Q gi|254781074|r 162 VF-MLWGASAQKKQDVLDHKRHLVLKAAHPSPLSASHGFF 200 (227) Q Consensus 162 Vf-iLwG~~A~~~~~~i~~~~~~il~~~HPSPls~~~gF~ 200 (227) ++ +-|+..-. ..+++..+..++ --|||+|-.+||.. T Consensus 83 iv~~g~~~il~--~~~l~~~~~~~i-N~HpslLP~~rG~~ 119 (209) T d1jkxa_ 83 VVLAGFMRILS--PAFVSHYAGRLL-NIHPSLLPKYPGLH 119 (209) T ss_dssp EEESSCCSCCC--HHHHHHTTTSEE-EEESSCTTSCCSSC T ss_pred EEEEEEEEECC--HHHHCCCCCCEE-EECCCHHCCCCCCC T ss_conf 99830568617--055302336779-70773110367767 Done!