BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781074|ref|YP_003065487.1| uracil-DNA glycosylase
[Candidatus Liberibacter asiaticus str. psy62]
         (227 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781074|ref|YP_003065487.1| uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 227

 Score =  471 bits (1212), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MEGVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVK 60
           MEGVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVK
Sbjct: 1   MEGVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVK 60

Query: 61  VVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEG 120
           VVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEG
Sbjct: 61  VVILGQDPYHNYGQAHGLCFSVPLGIRIPPSLVNVYKELQEDVNFIPPTHGFLEHWGHEG 120

Query: 121 VLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDHK 180
           VLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDHK
Sbjct: 121 VLLLNAVLTVEEGRAASHRGRGWEQFTDSVIDLISNNHQNIVFMLWGASAQKKQDVLDHK 180

Query: 181 RHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIPLS 227
           RHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIPLS
Sbjct: 181 RHLVLKAAHPSPLSASHGFFGCRHFSKANRYLQEHGKTTVNWQIPLS 227


>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 898

 Score = 25.0 bits (53), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 149 SVIDLISNNHQNIVFMLWGASAQKKQDVL 177
           SV+D +    Q+ + ML G S +KK  VL
Sbjct: 811 SVMDALQKKIQSGIIMLVGISKEKKASVL 839


>gi|254780318|ref|YP_003064731.1| ribosomal protein L20 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 123

 Score = 23.9 bits (50), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 180 KRHLVLKAAHPSPLSASHGFFGCR 203
           KR +V  A H   L ++ GF+G R
Sbjct: 5   KRGVVSSAKHKKVLKSAKGFYGRR 28


>gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 297

 Score = 22.7 bits (47), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 132 EGRAASHRGRGWEQFTDSVIDLISNNHQN 160
           EG    HR +      D  IDLI + H+N
Sbjct: 49  EGMIDHHRSKILSIIADKPIDLIIHRHEN 77


>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
           decarboxylase/phosphopantothenate synthase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 405

 Score = 22.3 bits (46), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 11/82 (13%)

Query: 27  KEFLLSEKRKGKRIFPRGSHYFRAFDITPFNKVKVVILGQDPYH-----NYGQAHGLCFS 81
           KE LL    KGKR        +   D  P   +     GQ  +       Y  A  +  S
Sbjct: 186 KELLL----KGKRALVTSGPTYEPLD--PMRYIANRSSGQQGHAIAKSLAYFGAEVILIS 239

Query: 82  VPLGIRIPPSLVNVYKELQEDV 103
            P+ I  PP+++ ++ E  ED+
Sbjct: 240 GPVSIADPPNVMTIHVERAEDM 261


>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 957

 Score = 21.9 bits (45), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 2   EGVKIHESWKSLLENHFQSEHMRNLKEFLLSEKRKGKRIFPRGS 45
           EG K+  S +      F   H       +L ++  GKR FP G+
Sbjct: 620 EGYKVRLSGQDCERGTFSHRHA------ILCDQETGKRYFPLGN 657


>gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 141

 Score = 21.9 bits (45), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 11 KSLLENHFQSEHMRNLKEFLLSEKRKGKRI 40
          ++LL   F+++   NL   L  E  KGKR+
Sbjct: 2  RTLLFYRFKNDWEYNLLVLLQDEYEKGKRV 31


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.138    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,352
Number of Sequences: 1233
Number of extensions: 6521
Number of successful extensions: 17
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 8
length of query: 227
length of database: 328,796
effective HSP length: 71
effective length of query: 156
effective length of database: 241,253
effective search space: 37635468
effective search space used: 37635468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)