Query         gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 266
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed Jun  1 00:26:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781075.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1wyu_B Glycine dehydrogenase s  53.6     6.2 0.00026   18.9   2.3   98   23-140    45-147 (474)
  2 3mtv_A NSP1B, papain-like cyst  42.1      10 0.00043   17.6   1.9   37    9-50     84-120 (203)
  3 1wyu_A Glycine dehydrogenase (  38.8      19 0.00081   15.8   3.7   39  100-138   108-146 (438)
  4 3del_B Arginine binding protei  21.1      39  0.0016   13.8   3.0   41  176-222   197-237 (242)
  5 2g48_C Islet amyloid polypepti  18.6      25  0.0011   15.0   0.5   23    3-28     10-32  (37)
  6 1erd_A Pheromone ER-2; NMR {Eu  15.9      34  0.0014   14.2   0.6   14  104-117    22-35  (40)
  7 1kvp_A SPV4 capsid protein VP1  15.7      51  0.0022   13.0   2.9   52  132-183   262-315 (497)
  8 3iqc_A FLIS, flagellar protein  14.9      54  0.0023   12.9   1.9   18  126-143   108-125 (131)
  9 3f4m_A Tumor necrosis factor,   14.6      55  0.0023   12.8   1.7   54  141-194    54-112 (161)
 10 2doh_C Fragment, plasminogen-b  14.0      57  0.0024   12.7   1.5   24  191-215     7-30  (30)

No 1  
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomics initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus HB8} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=53.65  E-value=6.2  Score=18.93  Aligned_cols=98  Identities=18%  Similarity=0.076  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEHHHHH--HH---
Q ss_conf             0878887899999999843334566667999999999999999999999999998531420022222011200--65---
Q gi|254781075|r   23 LSPTEVYNVHRRIWHLLRDDFGYFTKRTFFCFAFFITIIYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYT--WH---   97 (266)
Q Consensus        23 lsptevynvhrriwhllrddfgyftkrtffcfaffitiiyvffpifinflisyiyknigykissqyyslteyt--wh---   97 (266)
                      +|-.|   +-|.+-.|...+.+-.+  . |+|+=--+  +-+-|-.+..+++            -|-++|-|.  .-   
T Consensus        45 ~SE~e---l~r~l~~La~kN~~~~~--~-~~glG~~~--~hyvP~vv~~~~~------------~yTaYTPYQPaEiSQG  104 (474)
T 1wyu_B           45 VDELT---LVRHYTGLSRRQVGVDT--T-FYPLGSCT--MKYNPKLHEEAAR------------LFADLHPYQDPRTAQG  104 (474)
T ss_dssp             CCHHH---HHHHHHHHHTTCCCTTT--S-CCCBTTTC--CCCCCHHHHHHHH------------TTSSCCTTSCGGGCHH
T ss_pred             CCHHH---HHHHHHHHHHCCCCCCC--C-CCCCCCCC--CCCCHHHHHHHHH------------HHHCCCCCCCHHHHHH
T ss_conf             89999---99999999957778444--5-25670316--7728777667999------------9757799998799999


Q ss_pred             HHHHHHHHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             4999999999865641117741333102259999999999999
Q gi|254781075|r   98 DIETFLALLYMSCILVATDDRKLRMIEDGDRIIEIIQSIRRAF  140 (266)
Q Consensus        98 dietflallymscilvatddrklrmiedgdriieiiqsirraf  140 (266)
                      -.+...-.--|-|-|...|--..-|-..+.-.-|-+...+|..
T Consensus       105 ~LQalfEfQsmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~  147 (474)
T 1wyu_B          105 ALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYH  147 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999999999999996887446677427899999999999988


No 2  
>3mtv_A NSP1B, papain-like cysteine protease; PRRSV, nuclease, hydrol; 2.80A {Porcine reproductive and respiratory svirus}
Probab=42.12  E-value=10  Score=17.56  Aligned_cols=37  Identities=32%  Similarity=0.400  Sum_probs=27.4

Q ss_pred             HHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             652143210032010878887899999999843334566667
Q gi|254781075|r    9 IVATSKKWSFLFAILSPTEVYNVHRRIWHLLRDDFGYFTKRT   50 (266)
Q Consensus         9 ivatskkwsflfailsptevynvhrriwhllrddfgyftkrt   50 (266)
                      .|-.+|-|--+| -.+|+||-+-.-+    +.|.|||-||-.
T Consensus        84 tv~~g~CW~~~F-~~l~~~v~~~E~~----~A~~fGYQTk~G  120 (203)
T 3mtv_A           84 TVPEGNCWWRLL-DSLPPEVQYKEIR----HANQFGYQTKHG  120 (203)
T ss_dssp             GSCCSCTTGGGG-CSSCHHHHHHHHH----HHHHSSCSSTTC
T ss_pred             CCCCCCCHHHHH-CCCCHHHHHHHHH----HHHHHCCCCCCC
T ss_conf             777774306532-6997677256776----677627535667


No 3  
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomics initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus HB8} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=38.78  E-value=19  Score=15.78  Aligned_cols=39  Identities=13%  Similarity=0.074  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf             999999998656411177413331022599999999999
Q gi|254781075|r  100 ETFLALLYMSCILVATDDRKLRMIEDGDRIIEIIQSIRR  138 (266)
Q Consensus       100 etflallymscilvatddrklrmiedgdriieiiqsirr  138 (266)
                      +....+--|-|-|..-|--.+-|-..+.-..|-+.-++|
T Consensus       108 q~l~e~q~~l~eltGmd~~n~s~~dga~a~~ea~~~~~~  146 (438)
T 1wyu_A          108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR  146 (438)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             999999999999719775565762688999999999876


No 4  
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, protein binding, transport protein; 1.92A {Chlamydia trachomatis}
Probab=21.13  E-value=39  Score=13.82  Aligned_cols=41  Identities=12%  Similarity=0.361  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             41248878999975889999986665202456999985403012665
Q gi|254781075|r  176 IGLHQKQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPL  222 (266)
Q Consensus       176 iglhqkqidlihqnidrhlarmknqlvaesdeledilsrysiesipl  222 (266)
                      +++.+..-+|+. -+++-+++|+     .+.+++.|+.+|.++++--
T Consensus       197 va~~k~~~~l~~-~ln~al~~l~-----~~G~~~~I~~ky~l~~~~~  237 (242)
T 3del_B          197 IGVASDRPALAL-KIEAAVQEIR-----KEGVLAELEQKWGLNNLEH  237 (242)
T ss_dssp             EEEETTCHHHHH-HHHHHHHHHH-----HTTHHHHHHHHTTGGGCSS
T ss_pred             EEEECCCHHHHH-HHHHHHHHHH-----HCCHHHHHHHHHCCCHHHH
T ss_conf             999489999999-9999999999-----7878999999979954650


No 5  
>2g48_C Islet amyloid polypeptide; protein-peptide complex, hydrolase; 2.60A {Homo sapiens} PDB: 2kb8_A 3hgz_D 2kj7_A
Probab=18.62  E-value=25  Score=15.03  Aligned_cols=23  Identities=48%  Similarity=0.587  Sum_probs=13.9

Q ss_pred             HHHHHHHHHCCCCHHHHHHHCCHHHH
Q ss_conf             66655665214321003201087888
Q gi|254781075|r    3 ERIANTIVATSKKWSFLFAILSPTEV   28 (266)
Q Consensus         3 eriantivatskkwsflfailsptev   28 (266)
                      .|.||-.+..|..   +=||+|||.|
T Consensus        10 qrLanFL~rssnn---~Gai~spt~v   32 (37)
T 2g48_C           10 QRLANFLVHSSNN---FGAILSSTNV   32 (37)
T ss_pred             HHHHHHHHHCCCC---CCCEECCCCC
T ss_conf             9999998643556---6522077656


No 6  
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=15.89  E-value=34  Score=14.22  Aligned_cols=14  Identities=50%  Similarity=0.883  Sum_probs=11.3

Q ss_pred             HHHHHHHHHEECCC
Q ss_conf             99998656411177
Q gi|254781075|r  104 ALLYMSCILVATDD  117 (266)
Q Consensus       104 allymscilvatdd  117 (266)
                      .-|||.||-+.||.
T Consensus        22 gplymtcigittdp   35 (40)
T 1erd_A           22 GPLYMTCIGITTDP   35 (40)
T ss_dssp             HHHHHHHHHHHTCT
T ss_pred             CCEEEEEEEECCCC
T ss_conf             87057887421487


No 7  
>1kvp_A SPV4 capsid protein VP1; bacteriophage SPV4 coat protein, chimera, icosahedral virus; 27.00A {Enterobacteria phage PHIX174} SCOP: b.121.5.1
Probab=15.73  E-value=51  Score=13.03  Aligned_cols=52  Identities=8%  Similarity=0.098  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHEEEECCCHHHHHHHHHHHH
Q ss_conf             9999999998755888887--889999973003100253146477641248878
Q gi|254781075|r  132 IIQSIRRAFDQYKEEERKA--LSDIQEQLLNDASKKIVFSSDREEYIGLHQKQI  183 (266)
Q Consensus       132 iiqsirrafdqykeeerka--lsdiqeqllndaskkivfssdreeyiglhqkqi  183 (266)
                      -|.++|+||-.-|-.|+.|  -++-.|++..--....--..+|-||+|-..-.+
T Consensus       262 tI~~Lr~a~~~q~~~e~~ar~gtrY~e~i~~hfgv~~~d~~~rpeyLgg~~~~i  315 (497)
T 1kvp_A          262 DIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNLWA  315 (497)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCE
T ss_conf             299999999999999998761763899999857904763012866342863312


No 8  
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} PDB: 3k1i_A
Probab=14.91  E-value=54  Score=12.90  Aligned_cols=18  Identities=11%  Similarity=0.311  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             259999999999999875
Q gi|254781075|r  126 GDRIIEIIQSIRRAFDQY  143 (266)
Q Consensus       126 gdriieiiqsirrafdqy  143 (266)
                      =|.++.+++.+|-||.|-
T Consensus       108 l~ev~~il~~L~eaW~~i  125 (131)
T 3iqc_A          108 IDLVLNVARGLLEAWREI  125 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999988


No 9  
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=14.60  E-value=55  Score=12.85  Aligned_cols=54  Identities=17%  Similarity=0.294  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHEEEE-----CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8755888887889999973003100253-----14647764124887899997588999
Q gi|254781075|r  141 DQYKEEERKALSDIQEQLLNDASKKIVF-----SSDREEYIGLHQKQIDLIHQNIDRHL  194 (266)
Q Consensus       141 dqykeeerkalsdiqeqllndaskkivf-----ssdreeyiglhqkqidlihqnidrhl  194 (266)
                      +|...||-+-..+++..+-.-|-.-|-|     +-||.--+++-...-+++||-+.|||
T Consensus        54 ~qf~~eEl~~~~~fr~K~~~~amt~iSFyevdfTfD~~~L~~~L~ecr~~L~~lV~~HL  112 (161)
T 3f4m_A           54 GSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHHL  112 (161)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             88999999999999999998889985220111342699999999999999999998768


No 10 
>2doh_C Fragment, plasminogen-binding group A steptococcal M-like protein PAM; lysine-binding site, kringle domains, hydrolase; HET: DIO; 2.30A {Homo sapiens} PDB: 2kj4_B 1i5k_C 2doi_C
Probab=14.04  E-value=57  Score=12.75  Aligned_cols=24  Identities=50%  Similarity=0.740  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8999998666520245699998540
Q gi|254781075|r  191 DRHLARMKNQLVAESDELEDILSRY  215 (266)
Q Consensus       191 drhlarmknqlvaesdeledilsry  215 (266)
                      |..|.|.||. -.|..|||..||.|
T Consensus         7 daelqrlkne-rheeaelerllsey   30 (30)
T 2doh_C            7 DAELQRLKNE-RHEEAELERLLSEY   30 (30)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHCC---
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHCC
T ss_conf             2999998764-55699999987639


Done!