Query gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 266
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:19:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781075.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wyub1 c.67.1.7 (B:2-472) Gly 41.9 7.1 0.00052 17.0 2.3 53 88-140 89-146 (471)
2 d1zmaa1 c.47.1.1 (A:1-115) Bac 17.1 18 0.0013 14.5 0.7 77 140-223 5-88 (115)
3 d1erda_ a.10.1.1 (A:) ER-2 {Eu 15.9 19 0.0014 14.2 0.6 14 104-117 22-35 (40)
4 d1jvaa2 d.95.2.2 (A:464-581) V 13.0 19 0.0014 14.3 -0.1 20 238-257 28-47 (118)
5 d2fgga1 d.50.5.1 (A:4-87) Hypo 11.3 40 0.0029 12.2 1.2 20 148-167 59-78 (84)
6 d1wj9a1 d.58.53.1 (A:1-87) Hyp 10.8 40 0.0029 12.2 1.0 17 26-42 20-36 (87)
7 d3c7ba3 d.134.1.1 (A:167-238,A 10.6 42 0.0031 12.1 3.0 48 130-177 106-164 (185)
8 d1urfa_ a.2.6.1 (A:) Protein k 8.2 52 0.0038 11.5 2.4 48 129-194 23-70 (81)
9 d1qgva_ c.47.1.8 (A:) spliceos 7.8 43 0.0032 12.0 0.2 65 152-223 11-80 (137)
10 d1xwaa_ c.47.1.1 (A:) Thioredo 6.7 60 0.0044 11.1 0.5 65 156-221 17-81 (111)
No 1
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}
Probab=41.94 E-value=7.1 Score=17.04 Aligned_cols=53 Identities=17% Similarity=0.083 Sum_probs=29.9
Q ss_pred EEEHHHHH-----HHHHHHHHHHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 22011200-----654999999999865641117741333102259999999999999
Q gi|254781075|r 88 YYSLTEYT-----WHDIETFLALLYMSCILVATDDRKLRMIEDGDRIIEIIQSIRRAF 140 (266)
Q Consensus 88 yyslteyt-----whdietflallymscilvatddrklrmiedgdriieiiqsirraf 140 (266)
|-+.|-|. ---.+.+...--|-|-|...|--..-|-..+.-.-|-+.-.+|..
T Consensus 89 ~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~ 146 (471)
T d1wyub1 89 FADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYH 146 (471)
T ss_dssp TSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7552899987888999999999999999995877635566217789999998888776
No 2
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}
Probab=17.14 E-value=18 Score=14.45 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q ss_conf 98755888887889999973003100253146477641248878999975889999986665-------20245699998
Q gi|254781075|r 140 FDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQNIDRHLARMKNQL-------VAESDELEDIL 212 (266)
Q Consensus 140 fdqykeeerkalsdiqeqllndaskkivfssdreeyiglhqkqidlihqnidrhlarmknql-------vaesdeledil 212 (266)
.+..|+-+.....++++.+-+.-.--+.|.++.-.+- +.....+ ..-.+..+.++ ..+.+++.++.
T Consensus 5 ~~n~~~~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C---~~~~p~l----~~~~~~~~~~v~~v~~~~~~~~~~~~~~~ 77 (115)
T d1zmaa1 5 LDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYC---RKFAGTL----SGVVAETKAHIYFINSEEPSQLNDLQAFR 77 (115)
T ss_dssp HHHTTTSEECCHHHHHHHHHTTCCEEEEEECTTCHHH---HHHHHHH----HHHHHHHCCCCEEEETTCGGGHHHHHHHH
T ss_pred HHCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCH---HHHHHHH----HHHHHHHHHHHHHHEEECCCCCCCCCCCC
T ss_conf 6324223658999999999669989999929998327---8799998----99999854323221010002320023211
Q ss_pred HHCCCCCCCCC
Q ss_conf 54030126656
Q gi|254781075|r 213 SRYSIESIPLD 223 (266)
Q Consensus 213 srysiesipld 223 (266)
.+|.|.++|-=
T Consensus 78 ~~~~V~~~PTl 88 (115)
T d1zmaa1 78 SRYGIPTVPGF 88 (115)
T ss_dssp HHHTCCSSCEE
T ss_pred CCCCCCCCCEE
T ss_conf 00122565279
No 3
>d1erda_ a.10.1.1 (A:) ER-2 {Euplotes raikovi [TaxId: 5938]}
Probab=15.89 E-value=19 Score=14.22 Aligned_cols=14 Identities=50% Similarity=0.883 Sum_probs=11.3
Q ss_pred HHHHHHHHHEECCC
Q ss_conf 99998656411177
Q gi|254781075|r 104 ALLYMSCILVATDD 117 (266)
Q Consensus 104 allymscilvatdd 117 (266)
.-|||.||-+.||.
T Consensus 22 gplymtcigittdp 35 (40)
T d1erda_ 22 GPLYMTCIGITTDP 35 (40)
T ss_dssp HHHHHHHHHHHTCT
T ss_pred CCEEEEEEEECCCC
T ss_conf 87057887421487
No 4
>d1jvaa2 d.95.2.2 (A:464-581) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.05 E-value=19 Score=14.35 Aligned_cols=20 Identities=40% Similarity=0.793 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 88887766413243488877
Q gi|254781075|r 238 HVYLLGKWISRGEIQRSQIA 257 (266)
Q Consensus 238 hvyllgkwisrgeiqrsqia 257 (266)
..|+||-|+.-|--.+++|.
T Consensus 28 ~aYlLGlWlGDG~s~~~~it 47 (118)
T d1jvaa2 28 LAYLLGLWIGDGLSDRATFS 47 (118)
T ss_dssp HHHHHHHHHHHBCTTSSEEE
T ss_pred HHHHHHEEECCCCCCCCEEE
T ss_conf 65565304547766774266
No 5
>d2fgga1 d.50.5.1 (A:4-87) Hypothetical protein Rv2632c/MT2708 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=11.33 E-value=40 Score=12.23 Aligned_cols=20 Identities=40% Similarity=0.481 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHCCHHHEEE
Q ss_conf 88788999997300310025
Q gi|254781075|r 148 RKALSDIQEQLLNDASKKIV 167 (266)
Q Consensus 148 rkalsdiqeqllndaskkiv 167 (266)
-.||||+-.|||..|+..|-
T Consensus 59 ARAL~dLa~qLl~~aa~dIe 78 (84)
T d2fgga1 59 ARALSDLANQLFALTSSDIE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998887
No 6
>d1wj9a1 d.58.53.1 (A:1-87) Hypothetical protein TTHB192 {Thermus thermophilus [TaxId: 274]}
Probab=10.81 E-value=40 Score=12.17 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 88878999999998433
Q gi|254781075|r 26 TEVYNVHRRIWHLLRDD 42 (266)
Q Consensus 26 tevynvhrriwhllrdd 42 (266)
+.+|..|+.+|.+.-|+
T Consensus 20 ~~~~~~H~~v~~~FP~~ 36 (87)
T d1wj9a1 20 ANPYEMHRTLSKAVSRA 36 (87)
T ss_dssp HCHHHHHHHHHGGGHHH
T ss_pred CCHHHHHHHHHHHCCCC
T ss_conf 79999999999878997
No 7
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.55 E-value=42 Score=12.06 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHCCHHHEEEECCCHHHHHH
Q ss_conf 99999999999875588-----------8887889999973003100253146477641
Q gi|254781075|r 130 IEIIQSIRRAFDQYKEE-----------ERKALSDIQEQLLNDASKKIVFSSDREEYIG 177 (266)
Q Consensus 130 ieiiqsirrafdqykee-----------erkalsdiqeqllndaskkivfssdreeyig 177 (266)
-|++.-+.+.++-|+|+ +|-.+..++|.+.-++.-+.|...+...|+-
T Consensus 106 dev~~~v~~ii~~y~e~g~~~ER~g~~ieRvGle~fke~l~~~~~p~~~~~~~~~py~~ 164 (185)
T d3c7ba3 106 DEIKEILEAIWDWWDEEGKFRERIGELIWRKGMREFLKVIGREADVRMVKAPRNNPFMF 164 (185)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHCHHHHHHHTTCCCCGGGBSSCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHCCCCCCCCEE
T ss_conf 99999999999999986888531899998718199999877898867766999888542
No 8
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.16 E-value=52 Score=11.47 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999875588888788999997300310025314647764124887899997588999
Q gi|254781075|r 129 IIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQNIDRHL 194 (266)
Q Consensus 129 iieiiqsirrafdqykeeerkalsdiqeqllndaskkivfssdreeyiglhqkqidlihqnidrhl 194 (266)
+.|-...+++++..-+..+||++++.|.. |.+.+.| |+++++.+.+-.
T Consensus 23 vkeGaEnm~k~~~~~~~~DrK~l~eaq~~-l~eS~~K-----------------i~lLr~~L~~~~ 70 (81)
T d1urfa_ 23 VKQGAENMIQTYSNGSTKDRKLLLTAQQM-LQDSKTK-----------------IDIIRMQLRRAL 70 (81)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHHH-HHHHHHH-----------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHH-HHHHHHH-----------------HHHHHHHHHHHH
T ss_conf 99999999999856885217779999999-9989999-----------------999999999998
No 9
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.76 E-value=43 Score=11.98 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=35.3
Q ss_pred HHHHHHHHCCHHHEEE--ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 8999997300310025--3146477641248878999975889999986665---2024569999854030126656
Q gi|254781075|r 152 SDIQEQLLNDASKKIV--FSSDREEYIGLHQKQIDLIHQNIDRHLARMKNQL---VAESDELEDILSRYSIESIPLD 223 (266)
Q Consensus 152 sdiqeqllndaskkiv--fssdreeyiglhqkqidlihqnidrhlarmknql---vaesdeledilsrysiesipld 223 (266)
.++.+.+.+...|-+| |.++.-. +-++++-+ +++-...+++++ ....|+..++..+|.|.++|--
T Consensus 11 ~~~dq~i~~~~~k~vvv~F~a~wC~----~C~~~~p~---l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~ 80 (137)
T d1qgva_ 11 WQVDQAILSEEDRVVVIRFGHDWDP----TCMKMDEV---LYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTV 80 (137)
T ss_dssp HHHHHHHHTCSSSEEEEEEECTTSH----HHHHHHHH---HHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEE
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCC----CCHHCCHH---HHHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEEEEE
T ss_conf 9999999707998899999799775----52010848---9999987501005788643335100434574257899
No 10
>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.73 E-value=60 Score=11.07 Aligned_cols=65 Identities=26% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHCCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 997300310025314647764124887899997588999998666520245699998540301266
Q gi|254781075|r 156 EQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIP 221 (266)
Q Consensus 156 eqllndaskkivfssdreeyiglhqkqidlihqnidrhlarmknqlvaesdeledilsrysiesip 221 (266)
++.|.+++.|.|+-.=--.+-|--++....+ +.+-..+...-.-.....|+..++..+|.|.++|
T Consensus 17 ~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~-~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~P 81 (111)
T d1xwaa_ 17 DGQLTKASGKLVVLDFFATWCGPCKMISPKL-VELSTQFADNVVVLKVDVDECEDIAMEYNISSMP 81 (111)
T ss_dssp HHHHHHHTTSEEEEEEECTTCHHHHHHHHHH-HHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSS
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCCCCHHH-HHHHHHCCCCEEEEEEEEECCCCHHHCCCCCCCC
T ss_conf 9999865999899999978656850001457-9886411552479999850370122217775350
Done!