RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781075|ref|YP_003065488.1| hypothetical protein
CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)



>gnl|CDD|151372 pfam10925, DUF2680, Protein of unknown function (DUF2680).  Members
           in this family of proteins are annotated as yckD however
           currently no function is known.
          Length = 59

 Score = 31.5 bits (72), Expect = 0.24
 Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 145 EEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQNIDRHLARMKN 199
           ++++K +  + +Q+  +  K+++      E   + ++Q D I +NID+ +  MK 
Sbjct: 3   DQQKKEIEALYKQIA-ELRKQVI--DKYVEAGVITKEQADHIKKNIDKRVEYMKQ 54


>gnl|CDD|150893 pfam10292, 7TM_GPCR_Srab, Serpentine type 7TM GPCR receptor class
           ab chemoreceptor.  Chemoreception is mediated in
           Caenorhabditis elegans by members of the
           seven-transmembrane G-protein-coupled receptor class
           (7TM GPCRs) of proteins which are of the serpentine
           type. Srab is part of the Sra superfamily of
           chemoreceptors. Chemoperception is one of the central
           senses of soil nematodes like C. elegans which are
           otherwise 'blind' and 'deaf'. The expression pattern of
           the srab genes is biologically intriguing. Of the six
           promoters successfully expressed in transgenic
           organisms, one was exclusively expressed in the tail
           phasmid neurons, two were exclusively expressed in a
           head amphid neuron, and two were expressed both in the
           head and tail neurons as well as a limited number of
           other cells.
          Length = 324

 Score = 31.1 bits (71), Expect = 0.32
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 13/107 (12%)

Query: 48  KRTFFCFAFFITIIYVFFPIFINFLISYIYKNIGYKISS-QYYSLTEYTWHDIETFLALL 106
            R+      F  +  +F  + I           G  +S   Y++L E     +   L L 
Sbjct: 229 LRSITTLKIFANLDTIF--VVIQITGFLFLHFFGSSMSKPTYFALIE-----LNHCLPLY 281

Query: 107 YM-SCILVATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKALS 152
            + S I++    +K+R          +   ++  FD Y +   K  +
Sbjct: 282 AIISIIILYRKIKKIR----VKIKTSLEAHMQADFDAYFDNFNKQWT 324


>gnl|CDD|132362 TIGR03319, YmdA_YtgF, conserved hypothetical protein YmdA/YtgF. 
          Length = 514

 Score = 30.3 bits (69), Expect = 0.55
 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 131 EIIQSIRRAFDQYKEEERKALSDIQEQLLNDA---SKKIVFSSDREEYIGLHQKQIDLIH 187
           E +  +R   ++  +E R  L  ++ +LL       +K+     +EE +   +K++    
Sbjct: 58  EEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKE 117

Query: 188 QNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEAIKYI 236
           +N+D      + +L     E  + L R S          ++Q+EA + +
Sbjct: 118 KNLD----EKEEELEELIAEQREELERIS---------GLTQEEAKEIL 153


>gnl|CDD|181733 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
          Length = 569

 Score = 29.6 bits (67), Expect = 0.84
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 200 QLVAESDELEDILSRYSIESIPL-DLPEMSQDEAIKYI 236
            LV ++ +L  I + Y +  IP+ DL  ++Q E I+YI
Sbjct: 14  HLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYI 51


>gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated.
          Length = 444

 Score = 29.5 bits (67), Expect = 0.97
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)

Query: 122 MIEDGDRIIEIIQSIRR--AF---DQYKEEERKAL 151
           ++ED + +  I+++ RR  AF   D+Y+  ERK L
Sbjct: 160 LVEDDEGLRRILRNGRRRAAFHSEDEYRLRERKGL 194


>gnl|CDD|178869 PRK00108, mraY,
          phospho-N-acetylmuramoyl-pentapeptide-transferase;
          Provisional.
          Length = 344

 Score = 29.3 bits (67), Expect = 1.0
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 4/32 (12%)

Query: 43 FGYFTKRTFFCF--AFFITIIYVFFPIFINFL 72
          F Y T R       A  I++I    P FI FL
Sbjct: 4  FRYLTFRALLALLTALLISLI--LGPRFIRFL 33


>gnl|CDD|162694 TIGR02089, TTC, tartrate dehydrogenase.  Tartrate dehydrogenase
           catalyzes the oxidation of both meso- and (+)-tartrate
           as well as a D-malate. These enzymes are closely related
           to the 3-isopropylmalate and isohomocitrate
           dehydrogenases found in TIGR00169 and TIGR02088,
           respectively.
          Length = 352

 Score = 29.0 bits (65), Expect = 1.3
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 136 IRRAFDQYKE-EERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQNIDRHL 194
           IRR FDQY      K L  +   L N       F   RE   G +      IH+  D  +
Sbjct: 95  IRREFDQYANVRPAKLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIHRGTDEEV 154

Query: 195 A 195
           A
Sbjct: 155 A 155


>gnl|CDD|147876 pfam05960, DUF885, Bacterial protein of unknown function (DUF885). 
           This family consists of several hypothetical bacterial
           proteins several of which are putative membrane
           proteins.
          Length = 536

 Score = 28.8 bits (65), Expect = 1.3
 Identities = 9/59 (15%), Positives = 21/59 (35%)

Query: 93  EYTWHDIETFLALLYMSCILVATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKAL 151
              +      L+  ++      +D      +ED +  +  + +I R  DQ +   R+  
Sbjct: 72  RPWYRYPLNQLSGAHLGLPSFLSDQAPFETVEDAEAYLARLAAIPRLLDQARANLREGA 130


>gnl|CDD|131830 TIGR02783, TrbL_P, P-type conjugative transfer protein TrbL.  The
           TrbL protein is found in the trb locus of Agrobacterium
           Ti plasmids where it is involved in the type IV
           secretion system for plasmid conjugative transfer. TrbL
           is a homolog of the F-type TraG protein (which is
           believed to be a mating pair stabilization pore-forming
           protein, pfam07916) as well as the vir system VirB6
           protein.
          Length = 298

 Score = 28.9 bits (65), Expect = 1.4
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 43  FGYFTKRTFFCFAFFITIIYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWHDIETF 102
           FG       F + +    + V   +F+  LI+     IG    +Q+++        I+  
Sbjct: 174 FGGSRWTRDFAWNYLKYALSVGVKLFVLTLIA----GIGSSFFAQFHTALPAGTIGIQAL 229

Query: 103 LALLYMSCILVA 114
           L ++  S +++ 
Sbjct: 230 LVVVGASVVILG 241


>gnl|CDD|184048 PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional.
          Length = 445

 Score = 28.5 bits (64), Expect = 1.9
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 20/91 (21%)

Query: 124 EDGDRIIEIIQSIRRAFDQYKEEERK----ALSD---IQEQLLNDASKKIVFSSDRE-EY 175
              DR+ E  Q+  +A +  K E  +    A  D   I EQL   A        D E E 
Sbjct: 46  TAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQA--------DAEAER 97

Query: 176 IGLH-QKQIDLIHQNIDRHLARMKNQLVAES 205
           I +   +Q+ L+   + R L   + +L  ES
Sbjct: 98  IKVQGARQVQLLRAQLTRQL---RLELGHES 125


>gnl|CDD|182955 PRK11089, PRK11089, PTS system glucose-specific transporter
           subunits  IIBC; Provisional.
          Length = 477

 Score = 28.1 bits (63), Expect = 2.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 51  FFCFAFFITIIYVFFPIFINFLISYIYKNIGYKISS 86
           FF    F+ II     IF   ++S+I+  IG  I +
Sbjct: 146 FFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQT 181


>gnl|CDD|180864 PRK07168, PRK07168, bifunctional uroporphyrinogen-III
           methyltransferase/uroporphyrinogen-III synthase;
           Reviewed.
          Length = 474

 Score = 28.0 bits (62), Expect = 2.6
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 154 IQEQLLNDA--SKKIVFSSDREEYIGLHQKQIDLIHQNIDRHLARMKNQLVAES--DELE 209
            QE+L+     SK+  FSSD   Y+G +  +I  I + I      M ++   +   DE+ 
Sbjct: 340 TQEKLMQYGLLSKEAKFSSDTTVYLGRNINRIAFIQEKIGAGSYMMTHKYTIDHRFDEVH 399

Query: 210 D-ILSRYSIESI 220
             +LS +  +SI
Sbjct: 400 SRMLSEFLWDSI 411


>gnl|CDD|152113 pfam11677, DUF3273, Protein of unknown function (DUF3273).  Some
           members in this family of proteins are annotated as
           multi-transmembrane proteins however this cannot be
           confirmed. Currently this family has no known function.
          Length = 265

 Score = 27.7 bits (62), Expect = 2.8
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 37  HLLRDDFGYFTKRTFFCFAFFITIIYVFFPIFINFLISYIYKNIG--YKISSQYYSLTEY 94
           + LR  F           +  +  I  +       ++S+    +    K+ S ++     
Sbjct: 22  YNLRSGF------LLQLLSLTLLFISYWS-GGGLGILSFDLYALPESVKVGSAFFLSI-S 73

Query: 95  TWHDIETFLALLYMSCILVATDDRK 119
             H       LL MS  ++  DD K
Sbjct: 74  LLHGGYLLGTLLIMSFQVLLADDSK 98


>gnl|CDD|149633 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68).  Proteins in
           this family are subunits the FACT complex. The FACT
           complex plays a role in transcription initiation and
           promotes binding of TATA-binding protein (TBP) to a TATA
           box in chromatin.
          Length = 152

 Score = 28.0 bits (63), Expect = 2.9
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 129 IIEIIQSIRRAFDQYKEEERKALSDI--QEQL-LNDASKKIVFS 169
           + + I+ +++   + +E ERK  +D+  QE+L LN   +     
Sbjct: 83  VFKAIKELQKRVKK-RETERKEKADVVEQEKLILNRNKRPPRLK 125


>gnl|CDD|183402 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed.
          Length = 431

 Score = 27.7 bits (62), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 188 QNIDRHLARMK---NQLVAESDELEDIL 212
           + IDR LA M+     L+A   ++EDIL
Sbjct: 280 ERIDRELAPMRERYEALIARPADIEDIL 307


>gnl|CDD|180186 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
          Length = 619

 Score = 27.8 bits (63), Expect = 3.0
 Identities = 10/65 (15%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 124 EDGDRIIEIIQSIRRAFDQYKE--EERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQK 181
           E  ++++E  +++ + + + ++  E++      Q +      +K+    +  + + L  K
Sbjct: 215 ELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLK---EELKSLRLTSK 271

Query: 182 QIDLI 186
           QID +
Sbjct: 272 QIDEL 276


>gnl|CDD|129888 TIGR00806, rfc, RFC reduced folate carrier.  Proteins of the RFC
           family are so-far restricted to animals. RFC proteins
           possess 12 putative transmembrane a-helical spanners
           (TMSs) and evidence for a 12 TMS topology has been
           published for the human RFC. The RFC transporters appear
           to transport reduced folate by an energy-dependent,
           pH-dependent, Na+-independent mechanism. Folate:H+
           symport, folate:OH- antiport and folate:anion antiport
           mechanisms have been proposed, but the energetic
           mechanism is not well defined.
          Length = 511

 Score = 27.5 bits (61), Expect = 3.4
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 60  IIYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCI-LVATDDR 118
           + YV F     FL+      I   +S +  +L       I TF+A    + I  V +D R
Sbjct: 358 VTYVLFRGIYQFLVPIATFQIASSLSKELCALV----FGINTFVATALKTIITAVVSDKR 413

Query: 119 KL 120
            L
Sbjct: 414 GL 415


>gnl|CDD|172952 PRK14477, PRK14477, bifunctional nitrogenase molybdenum-cofactor
           biosynthesis protein NifE/NifN; Provisional.
          Length = 917

 Score = 27.4 bits (61), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 212 LSRYSIESIPLDLPEMSQDEAI 233
           LSR+  ESI L+   MS+  AI
Sbjct: 531 LSRHFKESIALNTTAMSEVTAI 552


>gnl|CDD|147793 pfam05832, DUF846, Eukaryotic protein of unknown function
          (DUF846).  This family consists of several of unknown
          function from a variety of eukaryotic organisms.
          Length = 140

 Score = 27.6 bits (62), Expect = 3.8
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 50 TFFCFAFFITIIYVFFPIFINFLISYI 76
              F     ++Y+   +F NF++ +I
Sbjct: 10 FHLLFKLLAILLYLLGGLFSNFILQFI 36


>gnl|CDD|151461 pfam11014, DUF2852, Protein of unknown function (DUF2852).  This
           bacterial family of proteins has no known function.
          Length = 115

 Score = 27.2 bits (61), Expect = 4.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 138 RAFDQYKEEERKALSDIQEQ 157
            AFD+Y+ E  + L + Q  
Sbjct: 70  EAFDEYRAETLRRLEEEQRA 89


>gnl|CDD|179718 PRK04028, PRK04028, glutamyl-tRNA(Gln) amidotransferase subunit E;
           Validated.
          Length = 630

 Score = 27.1 bits (61), Expect = 4.3
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 111 ILVATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKALSD 153
           ILVA ++ K     +      +I+  + A +   EE R AL D
Sbjct: 376 ILVADEEEKAEKALE-----AVIERAKEALEGVPEETRGALPD 413


>gnl|CDD|165201 PHA02867, PHA02867, C-type lectin protein; Provisional.
          Length = 167

 Score = 27.0 bits (59), Expect = 5.4
 Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 12/65 (18%)

Query: 45 YFTKRTFFCFAFFITIIYVFFPIFINFLIS--YIYKN---------IGYKISSQYYSLTE 93
                +        +  + F I +       Y +           IGY     Y+++ E
Sbjct: 9  VSEVSCYAITVLG-ILCLILFTILVVVTCKWYYAFPYFSKVCPDEWIGYNSKCYYFTINE 67

Query: 94 YTWHD 98
            W+D
Sbjct: 68 TNWND 72


>gnl|CDD|165227 PHA02909, PHA02909, hypothetical protein; Provisional.
          Length = 72

 Score = 26.8 bits (59), Expect = 5.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 38 LLRDDFG-----YFTKRTFFCFAFFITIIYVFFPIFINFLISYIY 77
          +L  D+G     Y+T+ TF     FI  + +F  +F     SY+Y
Sbjct: 14 MLSVDYGNGKKVYYTENTFCIMVSFILFVIIFLSMFTILACSYVY 58


>gnl|CDD|152563 pfam12128, DUF3584, Protein of unknown function (DUF3584).  This
           protein is found in bacteria and eukaryotes. Proteins in
           this family are typically between 943 to 1234 amino
           acids in length. There are two conserved sequence
           motifs: GKT and YLP.
          Length = 1192

 Score = 26.9 bits (60), Expect = 6.2
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 22/92 (23%)

Query: 122 MIEDGDRIIEIIQSIRRAFDQ----YKEEERKALSDIQEQLLNDASKKIVFSSDREEYIG 177
           +    D +    Q I+R +++     KE+  + L     +              REE   
Sbjct: 362 VEARLDLLTGKHQDIQRKYERRKQKIKEQLERDLEKNNARRAA----------IREE--- 408

Query: 178 LHQKQIDLIHQNIDRHLARMKNQLVAESDELE 209
                       I+  L+ +++QL  + + L+
Sbjct: 409 -----KARQKAAIEEALSALESQLRQQLEALK 435


>gnl|CDD|149949 pfam09073, BUD22, BUD22.  BUD22 has been shown in yeast to be a
           nuclear protein involved in bud-site selection. It plays
           a role in positioning the proximal bud pole signal.
          Length = 426

 Score = 26.7 bits (59), Expect = 6.2
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 134 QSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQNIDRH 193
           + +RRA  + K  ER+ L    +      S     +   EE   L  K +DL  Q   ++
Sbjct: 7   KKLRRALKKAKGFERQKLGRRIKNAEKKKSDNDKLARIEEEIEAL--KTLDL-DQLAKKY 63

Query: 194 LAR 196
           L  
Sbjct: 64  LFS 66


>gnl|CDD|162068 TIGR00852, pts-Glc, PTS system, maltose and glucose-specific
           subfamily, IIC component.  permeases are in this class,
           as the cellobiose (Cel) b-glucoside PTS permease is in
           the Lac family (TC #4.A.3). These permeases show limited
           sequence similarity with members of the Fru family (TC
           #4.A.2). Several of the E. coli PTS permeases in the Glc
           family lack their own IIA domains and instead use the
           glucose IIA protein (IIAglc or Crr). Most of these
           permeases have the B and C domains linked together in a
           single polypeptide chain, and a cysteyl residue in the
           IIB domain is phosphorylated by direct phosphoryl
           transfer from IIAglc(his~P). Those permeases which lack
           a IIA domain include the maltose (Mal),
           arbutin-salicin-cellobiose (ASC), trehalose (Tre),
           putative glucoside (Glv) and sucrose (Scr) permeases of
           E. coli. Most, but not all Scr permeases of other
           bacteria also lack a IIA domain. This model is specific
           for the IIC domain of the Glc family PTS transporters.
          Length = 289

 Score = 26.5 bits (59), Expect = 7.0
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 17/98 (17%)

Query: 2   WERIANTIVATSKKWSFLFAILSPTEVYNVHRRIWHLLRDDFGYFTKRT-----FFCFAF 56
           W       +A       +  IL       +H R          +  K+      FF    
Sbjct: 50  WGNFFGFEIAKVGYTGVVGPILVGAIALALHER----------FLDKKLPDVLGFFLGPR 99

Query: 57  FITIIYVFFPIFINFLISYIYKNIGYKISSQYYSLTEY 94
           F+ II  F  I +   +  ++  +G  IS+  + L   
Sbjct: 100 FVVIIAGFVAILLIGPLGRVWPPVG--ISALLHWLYSA 135


>gnl|CDD|178902 PRK00149, dnaA, chromosomal replication initiation protein;
           Reviewed.
          Length = 450

 Score = 26.7 bits (60), Expect = 7.3
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 39/133 (29%)

Query: 129 IIEIIQSIRR-AFDQYKEEERKA----LSDIQ---------EQL------LNDASKKIVF 168
             + + ++R    +++KE+ R      + DIQ         E+       L++A K+IV 
Sbjct: 190 TNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVL 249

Query: 169 SSDREEYIGLHQKQIDLIHQNIDRHLARMKNQLVA--ESDELED---ILSRYSIESIPLD 223
           +SDR        K++  +    +R  +R +  L    E  +LE    IL +   E   +D
Sbjct: 250 TSDR------PPKELPGLE---ERLRSRFEWGLTVDIEPPDLETRIAIL-KKKAEEEGID 299

Query: 224 LPEMSQDEAIKYI 236
           LP    DE +++I
Sbjct: 300 LP----DEVLEFI 308


>gnl|CDD|152507 pfam12072, DUF3552, Domain of unknown function (DUF3552).  This
           presumed domain is functionally uncharacterized. This
           domain is found in bacteria, archaea and eukaryotes.
           This domain is about 200 amino acids in length. This
           domain is found associated with pfam00013, pfam01966.
           This domain has a single completely conserved residue A
           that may be functionally important.
          Length = 201

 Score = 26.4 bits (59), Expect = 8.2
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 131 EIIQSIRRAFDQYKEEERKALSDIQEQLL---NDASKKIVFSSDREEYIGLHQKQIDLIH 187
           E I  +R   ++  +E R  L   +++LL       +K      +EE +   +K++    
Sbjct: 60  EEIHKLRAEAERELKERRNELQRQEKRLLQKEETLDRKDESLEKKEESLEEKEKELAARQ 119

Query: 188 QNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEAIKYI 236
           Q ++     ++  +  +  ELE I               ++ +EA + +
Sbjct: 120 QQLEEKEEELEELIEEQQQELERI-------------SGLTAEEAKEIL 155


>gnl|CDD|151445 pfam10998, DUF2838, Protein of unknown function (DUF2838).  This
          bacterial family of proteins has no known function.
          Length = 111

 Score = 26.1 bits (58), Expect = 8.6
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 3/42 (7%)

Query: 17 SFLFAILSPTEVYNVHRRIWHLLRDDFGYFTKRTFFCFAFFI 58
          + L+    P   Y   ++ +H    D  YF     F    FI
Sbjct: 31 TVLYFYFMPIRFYTYRKKGYHYFLADLCYF---VNFLLLLFI 69


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.141    0.418 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,531,069
Number of extensions: 303775
Number of successful extensions: 1379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1369
Number of HSP's successfully gapped: 109
Length of query: 266
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,006,537
Effective search space: 697137438
Effective search space used: 697137438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.3 bits)