RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781075|ref|YP_003065488.1| hypothetical protein
CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)



>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
           [TaxId: 9606]}
          Length = 144

 Score = 29.8 bits (67), Expect = 0.23
 Identities = 14/112 (12%), Positives = 39/112 (34%), Gaps = 8/112 (7%)

Query: 112 LVATDDRKLRMIED---GDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIV- 167
           +    ++    +        +  ++    +    YK E  + L+ + E+     SK++  
Sbjct: 19  VQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQA 78

Query: 168 ----FSSDREEYIGLHQKQIDLIHQNIDRHLARMKNQLVAESDELEDILSRY 215
                 +D E+  G   +    +   + +    ++ +L +   +L   L R 
Sbjct: 79  AQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRD 130


>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
           (P-protein) {Thermus thermophilus [TaxId: 274]}
          Length = 471

 Score = 29.4 bits (65), Expect = 0.30
 Identities = 8/39 (20%), Positives = 20/39 (51%)

Query: 200 QLVAESDELEDILSRYSIESIPLDLPEMSQDEAIKYINH 238
           +LV    + ED++ +  +  +P  LPE+ +   +++   
Sbjct: 17  KLVKAVPKAEDLIPKEHLREVPPRLPEVDELTLVRHYTG 55


>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
           [TaxId: 562]}
          Length = 208

 Score = 27.1 bits (59), Expect = 1.4
 Identities = 18/180 (10%), Positives = 49/180 (27%), Gaps = 20/180 (11%)

Query: 27  EVYNVHRRIWHLLRDDFGYFTKRTFFCFAFFITIIYVFFPIFINFLISYIYKNI--GYKI 84
           +V        H + D FG                  +F        ++ +   +      
Sbjct: 39  QVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQ 98

Query: 85  SSQYYSLTEYTWHDIETFLALLYMSC---ILVATDDRKLRMIEDGDRIIEIIQSIRRAFD 141
                + + Y    +   +          +LV     + ++     R     + + +   
Sbjct: 99  HQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILA 158

Query: 142 -QYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQNIDRHLARMKNQ 200
            Q   E R A++D    + N+ +   +               +  +H +  +  ++  +Q
Sbjct: 159 AQATREARLAVADD--VIDNNGAPDAI------------ASDVARLHAHYLQLASQFVSQ 204


>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
          Length = 309

 Score = 25.2 bits (54), Expect = 5.4
 Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 93  EYTWHDIETFLALLYMSCILVATDDRKLRMIEDGDRIIE-IIQSIRRAFDQYKEEERKAL 151
                 +        +  I  A      +    G R +  +++ +         +     
Sbjct: 224 LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQT 283

Query: 152 SDIQEQLLNDASKKIVFSSDREEYI 176
            +I    + DA  ++V + D   +I
Sbjct: 284 VNIDAAYVADALGEVVENEDLSRFI 308


>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae
           [TaxId: 727]}
          Length = 205

 Score = 24.8 bits (53), Expect = 8.2
 Identities = 16/158 (10%), Positives = 42/158 (26%), Gaps = 5/158 (3%)

Query: 31  VHRRIWHLLRDDFGYFTKRTFFCFAFFITIIYVFFPIFINFLISYIYKNIGYKISSQYYS 90
           V      +L +                         +    +   + + +  + +     
Sbjct: 51  VEHFGAQILTEQGELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLF 110

Query: 91  LTEYTWHDIETFLALLYMSCILVATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKA 150
           +      +  T L    +   +            D +   +I + +     Q  ++ER  
Sbjct: 111 VVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIMNS---QVSQQERLK 167

Query: 151 LSDIQEQLLNDASKKIVFSSDREEYIGLHQKQIDLIHQ 188
            +D    + NDA         +++ + LHQ  +     
Sbjct: 168 WADD--VINNDAELAQNLPHLQQKVLELHQFYLQQAEN 203


>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit,
           N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 246

 Score = 24.7 bits (54), Expect = 8.4
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 13/71 (18%)

Query: 51  FFCFAFFIT-IIYVFFPIFINFL-------ISYIYKNIGYKISSQYYSLTEYTWHDIETF 102
           FF F F +  II     + + FL        + I  ++  KI    Y    YT  DI   
Sbjct: 164 FFAFHFILPFIIMAIAMVHLLFLHETGSNNPTGISSDV-DKIPFHPY----YTIKDILGA 218

Query: 103 LALLYMSCILV 113
           L L+    +LV
Sbjct: 219 LLLILALMLLV 229


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.418 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,056,871
Number of extensions: 51838
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 36
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.2 bits)