BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62] (266 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 542 bits (1397), Expect = e-156, Method: Compositional matrix adjust. Identities = 266/266 (100%), Positives = 266/266 (100%) Query: 1 MWERIANTIVATSKKWSFLFAILSPTEVYNVHRRIWHLLRDDFGYFTKRTFFCFAFFITI 60 MWERIANTIVATSKKWSFLFAILSPTEVYNVHRRIWHLLRDDFGYFTKRTFFCFAFFITI Sbjct: 1 MWERIANTIVATSKKWSFLFAILSPTEVYNVHRRIWHLLRDDFGYFTKRTFFCFAFFITI 60 Query: 61 IYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILVATDDRKL 120 IYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILVATDDRKL Sbjct: 61 IYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILVATDDRKL 120 Query: 121 RMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQ 180 RMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQ Sbjct: 121 RMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQ 180 Query: 181 KQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEAIKYINHVY 240 KQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEAIKYINHVY Sbjct: 181 KQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEAIKYINHVY 240 Query: 241 LLGKWISRGEIQRSQIARREYIGYLQ 266 LLGKWISRGEIQRSQIARREYIGYLQ Sbjct: 241 LLGKWISRGEIQRSQIARREYIGYLQ 266 >gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62] Length = 214 Score = 39.7 bits (91), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/270 (20%), Positives = 100/270 (37%), Gaps = 73/270 (27%) Query: 3 ERIANTIVATSKKWSFL---FAILSPTEVYNVHRRIWHLLR---DDFGYFTKRTFF---C 53 + I +T K F+ F + E R++W LLR +F RTF C Sbjct: 6 DSIPKITSSTGKCLKFIMRAFGLFDSAE----QRKLWSLLRYWSVEFWELLCRTFLWLLC 61 Query: 54 FAFFITIIYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILV 113 FF Y FF + Y +S + I + +L S ++ Sbjct: 62 LGFFTLFAYWFFG-----------EKFSYDVSIK-----------IVLAINVLLFSFVIA 99 Query: 114 ATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDRE 173 + + M +D ++ +I +I + QY E + + ++++ N F + + Sbjct: 100 LLGNPNIEMAKDIAQLFTLIDNIENGYGQYLE--KISQKNVEKDFFNSK-----FFTHFK 152 Query: 174 EYIGLHQKQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEAI 233 EYI DE++ IL RY IE IP L + ++ Sbjct: 153 EYI-----------------------------DEVDKILMRYGIEGIP--LTDFDHEKIK 181 Query: 234 KYINHVYLLGKWISRGEIQRSQIARREYIG 263 Y+ H+ ++ + + I ++ R ++IG Sbjct: 182 SYLTHIKIVRDCLKKDNIHYAKELRNDWIG 211 >gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 342 Score = 25.4 bits (54), Expect = 1.0, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 172 REEYIGLHQKQIDLIHQNIDRHLAR 196 +E ++ L KQID++ +N D L R Sbjct: 86 KERFLALQSKQIDILSRNTDWTLLR 110 >gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 24.3 bits (51), Expect = 2.5, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%) Query: 243 GKWI-SRGEIQRSQIARREYIGY 264 G W+ SRG++ SQ+ R +Y+ Y Sbjct: 176 GYWLASRGKVADSQVHRPKYLEY 198 >gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter asiaticus str. psy62] Length = 252 Score = 23.9 bits (50), Expect = 3.4, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 209 EDILSRYSIESIPLDLPEMSQDEAIKYINHVYLLGKWISRGEIQRSQIARREY 261 ED +S Y P D+ +Y H L W+ +G+ IAR+ + Sbjct: 200 EDTISLYVDPLTPRDI------SFTQYEKHACALVNWLEKGKFNEMSIARKAF 246 >gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus str. psy62] Length = 297 Score = 23.1 bits (48), Expect = 5.9, Method: Compositional matrix adjust. Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%) Query: 181 KQIDLIHQNIDRHLARMKNQLVAESD 206 K IDLI I RH R KN L+A+ D Sbjct: 66 KPIDLI---IHRHENRRKNLLIADMD 88 >gi|254780669|ref|YP_003065082.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter asiaticus str. psy62] Length = 301 Score = 22.7 bits (47), Expect = 6.7, Method: Compositional matrix adjust. Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 23/109 (21%) Query: 166 IVFSSDREEYIGLHQKQID---LIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPL 222 I++ + EE Q++ID +IH N HL KNQ+ +++ R+ + + P Sbjct: 3 ILYPQNLEEK----QRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQ------RFVLIAGPC 52 Query: 223 DLPEMSQDEAIKYINHVYLLGKWISRG--------EIQRSQIARREYIG 263 + S D A +Y + + ++ G + RS +A + +G Sbjct: 53 QI--ESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVG 99 >gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 631 Score = 22.3 bits (46), Expect = 8.6, Method: Compositional matrix adjust. Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%) Query: 131 EIIQSIRRA--FDQYKEEERKALSDI 154 E QS+++ F Q EE+ K+LSDI Sbjct: 285 EAFQSLKKGKKFIQLAEEQGKSLSDI 310 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.141 0.418 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 172,904 Number of Sequences: 1233 Number of extensions: 7201 Number of successful extensions: 42 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 19 length of query: 266 length of database: 328,796 effective HSP length: 72 effective length of query: 194 effective length of database: 240,020 effective search space: 46563880 effective search space used: 46563880 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 37 (18.9 bits)