BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781075|ref|YP_003065488.1| hypothetical protein
CLIBASIA_04885 [Candidatus Liberibacter asiaticus str. psy62]
(266 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 266
Score = 542 bits (1397), Expect = e-156, Method: Compositional matrix adjust.
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MWERIANTIVATSKKWSFLFAILSPTEVYNVHRRIWHLLRDDFGYFTKRTFFCFAFFITI 60
MWERIANTIVATSKKWSFLFAILSPTEVYNVHRRIWHLLRDDFGYFTKRTFFCFAFFITI
Sbjct: 1 MWERIANTIVATSKKWSFLFAILSPTEVYNVHRRIWHLLRDDFGYFTKRTFFCFAFFITI 60
Query: 61 IYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILVATDDRKL 120
IYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILVATDDRKL
Sbjct: 61 IYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILVATDDRKL 120
Query: 121 RMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQ 180
RMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQ
Sbjct: 121 RMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDREEYIGLHQ 180
Query: 181 KQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEAIKYINHVY 240
KQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEAIKYINHVY
Sbjct: 181 KQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEAIKYINHVY 240
Query: 241 LLGKWISRGEIQRSQIARREYIGYLQ 266
LLGKWISRGEIQRSQIARREYIGYLQ
Sbjct: 241 LLGKWISRGEIQRSQIARREYIGYLQ 266
>gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 214
Score = 39.7 bits (91), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 100/270 (37%), Gaps = 73/270 (27%)
Query: 3 ERIANTIVATSKKWSFL---FAILSPTEVYNVHRRIWHLLR---DDFGYFTKRTFF---C 53
+ I +T K F+ F + E R++W LLR +F RTF C
Sbjct: 6 DSIPKITSSTGKCLKFIMRAFGLFDSAE----QRKLWSLLRYWSVEFWELLCRTFLWLLC 61
Query: 54 FAFFITIIYVFFPIFINFLISYIYKNIGYKISSQYYSLTEYTWHDIETFLALLYMSCILV 113
FF Y FF + Y +S + I + +L S ++
Sbjct: 62 LGFFTLFAYWFFG-----------EKFSYDVSIK-----------IVLAINVLLFSFVIA 99
Query: 114 ATDDRKLRMIEDGDRIIEIIQSIRRAFDQYKEEERKALSDIQEQLLNDASKKIVFSSDRE 173
+ + M +D ++ +I +I + QY E + + ++++ N F + +
Sbjct: 100 LLGNPNIEMAKDIAQLFTLIDNIENGYGQYLE--KISQKNVEKDFFNSK-----FFTHFK 152
Query: 174 EYIGLHQKQIDLIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPLDLPEMSQDEAI 233
EYI DE++ IL RY IE IP L + ++
Sbjct: 153 EYI-----------------------------DEVDKILMRYGIEGIP--LTDFDHEKIK 181
Query: 234 KYINHVYLLGKWISRGEIQRSQIARREYIG 263
Y+ H+ ++ + + I ++ R ++IG
Sbjct: 182 SYLTHIKIVRDCLKKDNIHYAKELRNDWIG 211
>gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 342
Score = 25.4 bits (54), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 172 REEYIGLHQKQIDLIHQNIDRHLAR 196
+E ++ L KQID++ +N D L R
Sbjct: 86 KERFLALQSKQIDILSRNTDWTLLR 110
>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 24.3 bits (51), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 243 GKWI-SRGEIQRSQIARREYIGY 264
G W+ SRG++ SQ+ R +Y+ Y
Sbjct: 176 GYWLASRGKVADSQVHRPKYLEY 198
>gi|254781189|ref|YP_003065602.1| hypothetical protein CLIBASIA_05480 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 252
Score = 23.9 bits (50), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 209 EDILSRYSIESIPLDLPEMSQDEAIKYINHVYLLGKWISRGEIQRSQIARREY 261
ED +S Y P D+ +Y H L W+ +G+ IAR+ +
Sbjct: 200 EDTISLYVDPLTPRDI------SFTQYEKHACALVNWLEKGKFNEMSIARKAF 246
>gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus
str. psy62]
Length = 297
Score = 23.1 bits (48), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 181 KQIDLIHQNIDRHLARMKNQLVAESD 206
K IDLI I RH R KN L+A+ D
Sbjct: 66 KPIDLI---IHRHENRRKNLLIADMD 88
>gi|254780669|ref|YP_003065082.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 301
Score = 22.7 bits (47), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 166 IVFSSDREEYIGLHQKQID---LIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPL 222
I++ + EE Q++ID +IH N HL KNQ+ +++ R+ + + P
Sbjct: 3 ILYPQNLEEK----QRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQ------RFVLIAGPC 52
Query: 223 DLPEMSQDEAIKYINHVYLLGKWISRG--------EIQRSQIARREYIG 263
+ S D A +Y + + ++ G + RS +A + +G
Sbjct: 53 QI--ESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVG 99
>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 631
Score = 22.3 bits (46), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 131 EIIQSIRRA--FDQYKEEERKALSDI 154
E QS+++ F Q EE+ K+LSDI
Sbjct: 285 EAFQSLKKGKKFIQLAEEQGKSLSDI 310
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.141 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,904
Number of Sequences: 1233
Number of extensions: 7201
Number of successful extensions: 42
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 19
length of query: 266
length of database: 328,796
effective HSP length: 72
effective length of query: 194
effective length of database: 240,020
effective search space: 46563880
effective search space used: 46563880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 37 (18.9 bits)