HHsearch alignment for GI: 254781076 and conserved domain: PRK00015
>PRK00015 rnhB ribonuclease HII; Validated.
Probab=100.00 E-value=0 Score=468.07 Aligned_cols=195 Identities=51% Similarity=0.766 Sum_probs=187.3
Q ss_pred CCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-EEEEECC
Q ss_conf 886888999999779948999842787775222559999987010823311520289999987552110123-0788515
Q gi|254781076|r 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSA 86 (209)
Q Consensus 8 ~~p~~~~E~~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~~~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~~ 86 (209)
T Consensus 2 ~~p~~~~e~~l~~~g~~~ViGiDEaGRG~~~GP~vvaav~~~~~~~~~gv~DSK~Ls~~kR~~l~~~I~~~~~~~~i~~~ 81 (197)
T PRK00015 2 LVPMLSFEKALLKQGLGLIAGVDEAGRGPLAGPVVAAAVILDPNRIILGLNDSKKLSEKKREALYEEIKEKALAWSVGIA 81 (197)
T ss_pred CCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEC
T ss_conf 98727999999987990799863688787600016899998875676777310109999999999999998877631315
Q ss_pred CHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67998520479998865432100257532110126532246621226871147865200236666547758999999988
Q gi|254781076|r 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 (209)
Q Consensus 87 ~~~eID~~ni~~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~ 166 (209)
T Consensus 82 ~~~eID~~ni~~a~~~a~~~al~~l~~~~~~i~vDg~~~~~--~~~~~~~~KaD~~~~~VaAASIvAKv~RD~~m~~l~~ 159 (197)
T PRK00015 82 SPEEIDELNILEATMLAMRRAVAGLSVKPDYVLIDGNPVPV--PIPQEAIVKGDAKSPSIAAASILAKVTRDRLMEELDK 159 (197)
T ss_pred CHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79997400709999999999999649999999985999999--9974888525210035778899999899999999998
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 77798810289999989999999828583010784888
Q gi|254781076|r 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 (209)
Q Consensus 167 ~~p~Ygf~~nkGYgT~~H~~ai~~~G~~~~HR~Sf~~v 204 (209)
T Consensus 160 ~yp~Yg~~~nkGY~T~~H~~ai~~~G~~~~HR~S~~pi 197 (197)
T PRK00015 160 EYPGYGFAKHKGYGTKAHLEALKKHGPTPIHRRSFAPV 197 (197)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCC
T ss_conf 78898986587869799999999849698873998899