HHsearch alignment for GI: 254781076 and conserved domain: PRK00996

>PRK00996 ribonuclease HIII; Provisional.
Probab=100.00  E-value=3.2e-35  Score=240.62  Aligned_cols=182  Identities=28%  Similarity=0.382  Sum_probs=142.0

Q ss_pred             CCCEEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHH---
Q ss_conf             99489998427877752225599999870108----23311520289999987552110123078851567998520---
Q gi|254781076|r   22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH---   94 (209)
Q Consensus        22 ~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID~~---   94 (209)
T Consensus        86 ~~~~~iGsDE~G~Gd~FGPlvVaav~v~~~~~~~L~~lGVkDSK~Lsd~kI~~la~~I~~~~~~~~~~l~p~kYNel~~k  165 (303)
T PRK00996         86 DLRPHIGSDEVGKGDYFGPLTVAAVYVDKEQIPFLKKLGVDDSKKLTDTKIRQIAPQLREKIPHSVLLLSPEKYNELQAK  165 (303)
T ss_pred             CCCCCEEECCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHH
T ss_conf             56762003587788876771899999779999999975996601189999999999999748779999886878999984


Q ss_pred             CHHHHHHHHHH--HHCCCC---CCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             47999886543--210025---7532110126532246-----------6212268711478652002366665477589
Q gi|254781076|r   95 NIHKATLDAIY--HAVENL---QVIPRSALIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRD  158 (209)
Q Consensus        95 ni~~A~~~a~~--~ai~~l---~~~~~~ilIDg~~~~~-----------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD  158 (209)
T Consensus       166 ~~Nln~ika~lH~~aI~~ll~k~~~~~~ilIDqF~~~~~~~~yl~~~~~~~~~~i~~~~Kae~~~~aVAAASIiA---R~  242 (303)
T PRK00996        166 GYNQNKLKAWLHNQAIDNLLQKPSQPEAIVIDQFASPEVYLKYLAKEKNKFRDPVTFETKAESKHLAVAAASIIA---RY  242 (303)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH---HH
T ss_conf             348999999999999999983578998799716888078999987540478764488731554007899999999---99


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHH---HHHHHHCC------CCCCCCCCHHHHHH
Q ss_conf             99999988777988102899999899---99999828------58301078488864
Q gi|254781076|r  159 RLMRIAHKKYPDYGFDSHVGYPTAKH---QQVIKEKG------PSCIHRLTFRPLRN  206 (209)
Q Consensus       159 ~~m~~l~~~~p~Ygf~~nkGYgT~~H---~~ai~~~G------~~~~HR~Sf~~vk~  206 (209)
T Consensus       243 ~Fl~~m~~ls~~~g~~lPkGAg~~v~~~a~~i~~~~G~~~L~~~aKlHFknt~ka~~  299 (303)
T PRK00996        243 AFLENMDKLSKEAGMTLPKGAGAKVDKVAAQIIKKYGKEALEKIAKLHFANTEKAQK  299 (303)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999998199787888788999999999985999999999886113999999