HHsearch alignment for GI: 254781076 and conserved domain: PRK00996
>PRK00996 ribonuclease HIII; Provisional.
Probab=100.00 E-value=3.2e-35 Score=240.62 Aligned_cols=182 Identities=28% Similarity=0.382 Sum_probs=142.0
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHH---
Q ss_conf 99489998427877752225599999870108----23311520289999987552110123078851567998520---
Q gi|254781076|r 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH--- 94 (209)
Q Consensus 22 ~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID~~--- 94 (209)
T Consensus 86 ~~~~~iGsDE~G~Gd~FGPlvVaav~v~~~~~~~L~~lGVkDSK~Lsd~kI~~la~~I~~~~~~~~~~l~p~kYNel~~k 165 (303)
T PRK00996 86 DLRPHIGSDEVGKGDYFGPLTVAAVYVDKEQIPFLKKLGVDDSKKLTDTKIRQIAPQLREKIPHSVLLLSPEKYNELQAK 165 (303)
T ss_pred CCCCCEEECCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHH
T ss_conf 56762003587788876771899999779999999975996601189999999999999748779999886878999984
Q ss_pred CHHHHHHHHHH--HHCCCC---CCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 47999886543--210025---7532110126532246-----------6212268711478652002366665477589
Q gi|254781076|r 95 NIHKATLDAIY--HAVENL---QVIPRSALIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRD 158 (209)
Q Consensus 95 ni~~A~~~a~~--~ai~~l---~~~~~~ilIDg~~~~~-----------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD 158 (209)
T Consensus 166 ~~Nln~ika~lH~~aI~~ll~k~~~~~~ilIDqF~~~~~~~~yl~~~~~~~~~~i~~~~Kae~~~~aVAAASIiA---R~ 242 (303)
T PRK00996 166 GYNQNKLKAWLHNQAIDNLLQKPSQPEAIVIDQFASPEVYLKYLAKEKNKFRDPVTFETKAESKHLAVAAASIIA---RY 242 (303)
T ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH---HH
T ss_conf 348999999999999999983578998799716888078999987540478764488731554007899999999---99
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHH---HHHHHHCC------CCCCCCCCHHHHHH
Q ss_conf 99999988777988102899999899---99999828------58301078488864
Q gi|254781076|r 159 RLMRIAHKKYPDYGFDSHVGYPTAKH---QQVIKEKG------PSCIHRLTFRPLRN 206 (209)
Q Consensus 159 ~~m~~l~~~~p~Ygf~~nkGYgT~~H---~~ai~~~G------~~~~HR~Sf~~vk~ 206 (209)
T Consensus 243 ~Fl~~m~~ls~~~g~~lPkGAg~~v~~~a~~i~~~~G~~~L~~~aKlHFknt~ka~~ 299 (303)
T PRK00996 243 AFLENMDKLSKEAGMTLPKGAGAKVDKVAAQIIKKYGKEALEKIAKLHFANTEKAQK 299 (303)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998199787888788999999999985999999999886113999999