HHsearch alignment for GI: 254781076 and conserved domain: PRK13925
>PRK13925 rnhB ribonuclease HII; Provisional.
Probab=100.00 E-value=0 Score=459.96 Aligned_cols=184 Identities=43% Similarity=0.618 Sum_probs=174.7
Q ss_pred CCEEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCHHHHHHHCHH
Q ss_conf 9489998427877752225599999870108----23311520289999987552110123-078851567998520479
Q gi|254781076|r 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIH 97 (209)
Q Consensus 23 ~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~~~~~eID~~ni~ 97 (209)
T Consensus 7 ~g~IiGvDEaGRG~laGPvvvaav~~~~~~~~~l~~~gv~DSKkLs~kkR~~l~~~I~~~~~~~~i~~~s~~eID~~nI~ 86 (200)
T PRK13925 7 SGLIAGVDEVGRGCLFGPVVAAAVILPESAAEELLAAGLTDSKKLSQRRRAQLVPLIETVAIAWGIGQASAREIDRLNIL 86 (200)
T ss_pred CCCEEEECCCCCCCCHHCEEEEEEEEECCCCHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHCHH
T ss_conf 99899872888666410017999998065542230123404551578889999887875211028999089999875849
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99886543210025753211012653224662122687114786520023666654775899999998877798810289
Q gi|254781076|r 98 KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 (209)
Q Consensus 98 ~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~~p~Ygf~~nk 177 (209)
T Consensus 87 ~At~~am~~ai~~l~~~~~~vlvDG~~~~~~~~~~~~~ivKgD~~~~~IaAASIIAKV~RD~~M~~l~~~yP~Y~f~~nk 166 (200)
T PRK13925 87 QATELAMLRALQKLPSPPDLCLVDGNQPIRLLPGPQRTVVKGDSRSAAIAAASILAKVWRDALIKRLARRYPGYGLERNK 166 (200)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999863899778997368556778867477528971111005888999999999999999878699841265
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 99998999999982858301078488864
Q gi|254781076|r 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 (209)
Q Consensus 178 GYgT~~H~~ai~~~G~~~~HR~Sf~~vk~ 206 (209)
T Consensus 167 GYgTk~H~~ai~~~G~s~~HRkSf~P~~~ 195 (200)
T PRK13925 167 GYGTAKHRQALLQLGPTPLHRQSFLPCLI 195 (200)
T ss_pred CCCCHHHHHHHHHHCCCHHHCCCCHHHHH
T ss_conf 87819999999983949778698687999