HHsearch alignment for GI: 254781076 and conserved domain: TIGR00729
>TIGR00729 TIGR00729 ribonuclease HII; InterPro: IPR004649 Ribonuclease HII 3.1.26.4 from EC cleaves RNA from DNA-RNA hybrids. Archaeal members of this subfamily of RNase H are designated RNase HII and one has been shown to be active as a monomer. A member from Homo sapiens was characterised as RNase HI, large subunit.; GO: 0004523 ribonuclease H activity, 0016070 RNA metabolic process.
Probab=100.00 E-value=0 Score=329.17 Aligned_cols=179 Identities=34% Similarity=0.521 Sum_probs=149.6
Q ss_pred EEEEECCCCCCCCCCEEEE-EEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCC------CCEEEEECCCHHHHHH-
Q ss_conf 9998427877752225599-999870108----233115202899999875521101------2307885156799852-
Q gi|254781076|r 26 VAGIDEVGRGALAGPVVVA-AIILDPNNI----PFGINDSKKISHKKREELYEKITS------SAIISISSASHQYIDK- 93 (209)
Q Consensus 26 IiGvDEaGRG~~~GPlvva-av~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~------~~~~~i~~~~~~eID~- 93 (209)
T Consensus 1 v~GiDEAGRGpV~GPlVvag~~~~e~~~~~~L~~lGVkDSK~Lt~~~R~~L~~~i~~DneeL~~~~~~~~~i~p~eId~G 80 (235)
T TIGR00729 1 VAGIDEAGRGPVIGPLVVAGVFAIEEKREEELRKLGVKDSKKLTPGRRRELFRKIRQDNEELKLGRVEVLKITPEEIDRG 80 (235)
T ss_pred CCEEECCCCCCCCCCCEEEEEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCC
T ss_conf 91110058887206523687765313566454406844630169668999999860886527886689998630014662
Q ss_pred ----HC-HH----HHHHHHHHHHCCCCCCCC------CCCCCCCCCCCC------------------CCCEEEEEECCCC
Q ss_conf ----04-79----998865432100257532------110126532246------------------6212268711478
Q gi|254781076|r 94 ----HN-IH----KATLDAIYHAVENLQVIP------RSALIDGRSIPE------------------DLPCQAFAVIKGD 140 (209)
Q Consensus 94 ----~n-i~----~A~~~a~~~ai~~l~~~~------~~ilIDg~~~~~------------------~~~~~~~~i~KgD 140 (209)
T Consensus 81 mskf~~~~~~~~n~~e~~~~~~~~~~l~~kpnir~~~~~vyvD~~~~~~~rfedsfk~~~~~~~~~~~~~~~v~aEhKAD 160 (235)
T TIGR00729 81 MSKFERTRNINLNENEIEKFSAAVIILIVKPNIRVKLSEVYVDSVDVKPKRFEDSFKLKREIKLKERGEEIKVIAEHKAD 160 (235)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 12014227662058899999999864420466321412788833888840112457679999987517981899974778
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCC-HHHHHHHHH----C-C-CCCCCCCCHHHHHHHC
Q ss_conf 652002366665477589999999887---77988102899999-899999998----2-8-5830107848886403
Q gi|254781076|r 141 SISLSIAAASIIAKVTRDRLMRIAHKK---YPDYGFDSHVGYPT-AKHQQVIKE----K-G-PSCIHRLTFRPLRNLS 208 (209)
Q Consensus 141 ~~~~~VaaASIiAKv~RD~~m~~l~~~---~p~Ygf~~nkGYgT-~~H~~ai~~----~-G-~~~~HR~Sf~~vk~l~ 208 (209)
T Consensus 161 ~kY~~VSAASIiAKV~RD~~ie~lk~~~rkyG~~G----SGYPSDP~T~ewL~~~~~~~mG~~P~~vR~~W~Tv~~l~ 234 (235)
T TIGR00729 161 SKYPVVSAASIIAKVERDREIESLKRKPRKYGDIG----SGYPSDPRTREWLEEYFKSLMGELPDIVRRSWKTVRKLL 234 (235)
T ss_pred CCCCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHCC
T ss_conf 88862232334202245688998720232146557----878976356899999999862765300006506755115