HHsearch alignment of GI: 254781076 and MMDB domain: 1uax_A_1-168
>1uax_A (A:1-168) Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase; 2.00A {Pyrococcus horikoshii OT3}
Probab=100.00 E-value=1.1e-44 Score=299.29 Aligned_cols=148 Identities=32% Similarity=0.526 Sum_probs=135.2
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCCCCC----CCCCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCHHHHHHHCHHHH
Q ss_conf 899984278777522255999998701082----3311520289999987552110123-07885156799852047999
Q gi|254781076|r 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKA 99 (209)
Q Consensus 25 ~IiGvDEaGRG~~~GPlvvaav~~~~~~~~----~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~~~~~eID~~ni~~A 99 (209)
+|+|+|||||||+|||||+|||+++++... .|++|||+||+++|++|++.|++++ .|+++.++|+|||++|++.+
T Consensus 2 ~viGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~~~~~~v~~~~~~~id~~~~n~n 81 (168)
T 1uax_A 2 KVAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDILDDYYVLLVTPKEIDERHHSMN 81 (168)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHHTGGGSTTSCHHHHHHHHHHHHHHSSEEEEEEECHHHHHTCSSCHH
T ss_pred EEEEECCCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf 29824477766730330789999885650356545886400088999999998764204103776302688888630067
Q ss_pred HHHHH--HHHCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88654--32100257532110126532246-----------621226871147865200236666547758999999988
Q gi|254781076|r 100 TLDAI--YHAVENLQVIPRSALIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 (209)
Q Consensus 100 ~~~a~--~~ai~~l~~~~~~ilIDg~~~~~-----------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~ 166 (209)
+++++ .+++.++..++..+++|++..+. ..+.++.+++|||+++++||||||+|||+||++|.+|++
T Consensus 82 ~l~a~~~~~~i~~l~~~~~~~~iD~~~~~~~~~~~l~~~~~~~~~~~~~~~KgD~~~~~VaaASIiAKv~rd~~m~~l~~ 161 (168)
T 1uax_A 82 ELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQ 161 (168)
T ss_dssp HHHHHHHHHHHHTCSSCCSEEEEECTTSCHHHHHHHHHHHCSSCCEEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999741422212410112465311120002368888517877605533431048888879999999999998
Q ss_pred HCCCCC
Q ss_conf 777988
Q gi|254781076|r 167 KYPDYG 172 (209)
Q Consensus 167 ~~p~Yg 172 (209)
.||+||
T Consensus 162 ~yp~yG 167 (168)
T 1uax_A 162 KYGEFG 167 (168)
T ss_dssp HHCCCT
T ss_pred HCCCCC
T ss_conf 787889