HHsearch alignment of GI: 254781076 and MMDB domain: 2etj_A_1-171
>2etj_A (A:1-171) Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4) (RNAse HII), structural genomics, joint center for structural genomics; 1.74A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=333.37 Aligned_cols=164 Identities=44% Similarity=0.589 Sum_probs=154.5
Q ss_pred CCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 88688899999977994899984278777522255999998701082331152028999998755211012307885156
Q gi|254781076|r 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 (209)
Q Consensus 8 ~~p~~~~E~~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~ 87 (209)
..|.+.+|+.++..++.+++|+|||||||+|||||+|||+++.+. .|++|||+||+++|++|++.|++.+.|++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~viGiDEaGrG~~~GPlvvaav~~~~~~--~gi~DSK~Ls~~~r~~l~~~I~~~~~~~v~~i~ 85 (171)
T 2etj_A 8 HHHHHXGIDELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKEI--EGINDSKQLSPAKRERLLDEIXEKAAVGIGIAS 85 (171)
T ss_dssp -----CCGGGGGTTTSSSEEEEEEECTTCSBSCEEEEEEEECSCC--C----------CHHHHHHHHHHHHEEEEEEEEC
T ss_pred HHHCCCCHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEECCCC--CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 110246699999769977998637787885253689999977887--756411029989999876412245416999577
Q ss_pred HHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79985204799988654321002575321101265322466212268711478652002366665477589999999887
Q gi|254781076|r 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 (209)
Q Consensus 88 ~~eID~~ni~~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~ 167 (209)
|++||++||++++..+|.+++.++..+++.++||++..+. ++++.+++|||+++++||||||||||+||++|..|++.
T Consensus 86 p~~id~~ni~~~~~~~~~~~i~~l~~~~~~v~iD~~~~~~--~~~~~~~~KaD~~~~~VaaASIiAKv~RD~~m~~l~~~ 163 (171)
T 2etj_A 86 PEEIDLYNIFNATKLAXNRALENLSVKPSFVLVDGKGIEL--SVPGTCLVKGDQKSKLIGAASIVAKVFRDRLXSEFHRX 163 (171)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSSSCCSEEEEESSSCCC--SSCEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999870938899999999999534210100135777789--97856787788665400577778889999999999997
Q ss_pred CCCCCCCC
Q ss_conf 77988102
Q gi|254781076|r 168 YPDYGFDS 175 (209)
Q Consensus 168 ~p~Ygf~~ 175 (209)
||+|||++
T Consensus 164 yp~ygf~k 171 (171)
T 2etj_A 164 YPQFSFHK 171 (171)
T ss_dssp CTTSCHHH
T ss_pred CCCCCCCC
T ss_conf 87889846