HHsearch alignment of GI: 254781076 and MMDB domain: 3kio_A_1-208

>3kio_A (A:1-208) Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus}
Probab=100.00  E-value=0  Score=312.62  Aligned_cols=166  Identities=24%  Similarity=0.266  Sum_probs=143.8

Q ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCC---EEEEEC
Q ss_conf             89999997799489998427877752225599999870108----23311520289999987552110123---078851
Q gi|254781076|r   13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---IISISS   85 (209)
Q Consensus        13 ~~E~~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~---~~~i~~   85 (209)
                      .++..++..++.+|||+|||||||+|||||+|||+++++..    ..||+|||+||+++|++|++.|++.+   .|++..
T Consensus        17 ~~~~~~~~~~~~~viGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gi~DSK~Ls~~~r~~l~~~i~~~~~~~~~~v~~   96 (208)
T 3kio_A           17 SSPVPAVCLKEPCVLGVDEAGRGPVLGPXVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKXEEDGDFVGWALDV   96 (208)
T ss_dssp             ECCCCTHHHHSCEEEEEEEECSSCSBSCEEEEEEEEEGGGGGGCCCCCSCC--CCCHHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCCCHHHCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             58871545589819976276876620340689999812012303226875445299999999999999760676666312


Q ss_pred             CCHHHHHHHCH----------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---------CCCEEEEEECCCCCCCHHH
Q ss_conf             56799852047----------9998865432100257532110126532246---------6212268711478652002
Q gi|254781076|r   86 ASHQYIDKHNI----------HKATLDAIYHAVENLQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSI  146 (209)
Q Consensus        86 ~~~~eID~~ni----------~~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~---------~~~~~~~~i~KgD~~~~~V  146 (209)
                      ++|++||++|+          ..++..+|.+++.++...++.++|||+..+.         ..+.++.+++|||++|++|
T Consensus        97 ~~p~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iD~~~~~~~~~~~l~~~~~~~~~~~~~KaD~~~~~V  176 (208)
T 3kio_A           97 LSPNLISTSXLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGXPETYQARLQQHFPGIEVTVKAKADSLFPVV  176 (208)
T ss_dssp             ECHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSSCCHHHHHHHHHSSTTSEEEEETTGGGTSHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHH
T ss_conf             78999989999899999999999999999999985486522131244577055555411543312148873153110225


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             36666547758999999988777988102899
Q gi|254781076|r  147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG  178 (209)
Q Consensus       147 aaASIiAKv~RD~~m~~l~~~~p~Ygf~~nkG  178 (209)
                      |||||||||+||++|.+|++.||+|||.+|+|
T Consensus       177 AAASIiAKv~RD~~m~~l~~~yp~y~f~~~kG  208 (208)
T 3kio_A          177 SAASIFAKVARDKAVKNWQFVENLQDLDSDYG  208 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             69999999999999999986686767002698