HHsearch alignment of GI: 254781076 and MMDB domain: 3kio_A_1-208
>3kio_A (A:1-208) Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus}
Probab=100.00 E-value=0 Score=312.62 Aligned_cols=166 Identities=24% Similarity=0.266 Sum_probs=143.8
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCC---EEEEEC
Q ss_conf 89999997799489998427877752225599999870108----23311520289999987552110123---078851
Q gi|254781076|r 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---IISISS 85 (209)
Q Consensus 13 ~~E~~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~---~~~i~~ 85 (209)
.++..++..++.+|||+|||||||+|||||+|||+++++.. ..||+|||+||+++|++|++.|++.+ .|++..
T Consensus 17 ~~~~~~~~~~~~~viGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gi~DSK~Ls~~~r~~l~~~i~~~~~~~~~~v~~ 96 (208)
T 3kio_A 17 SSPVPAVCLKEPCVLGVDEAGRGPVLGPXVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKXEEDGDFVGWALDV 96 (208)
T ss_dssp ECCCCTHHHHSCEEEEEEEECSSCSBSCEEEEEEEEEGGGGGGCCCCCSCC--CCCHHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCHHHCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 58871545589819976276876620340689999812012303226875445299999999999999760676666312
Q ss_pred CCHHHHHHHCH----------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---------CCCEEEEEECCCCCCCHHH
Q ss_conf 56799852047----------9998865432100257532110126532246---------6212268711478652002
Q gi|254781076|r 86 ASHQYIDKHNI----------HKATLDAIYHAVENLQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSI 146 (209)
Q Consensus 86 ~~~~eID~~ni----------~~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~---------~~~~~~~~i~KgD~~~~~V 146 (209)
++|++||++|+ ..++..+|.+++.++...++.++|||+..+. ..+.++.+++|||++|++|
T Consensus 97 ~~p~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iD~~~~~~~~~~~l~~~~~~~~~~~~~KaD~~~~~V 176 (208)
T 3kio_A 97 LSPNLISTSXLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGXPETYQARLQQHFPGIEVTVKAKADSLFPVV 176 (208)
T ss_dssp ECHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSSCCHHHHHHHHHSSTTSEEEEETTGGGTSHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHH
T ss_conf 78999989999899999999999999999999985486522131244577055555411543312148873153110225
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 36666547758999999988777988102899
Q gi|254781076|r 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 (209)
Q Consensus 147 aaASIiAKv~RD~~m~~l~~~~p~Ygf~~nkG 178 (209)
|||||||||+||++|.+|++.||+|||.+|+|
T Consensus 177 AAASIiAKv~RD~~m~~l~~~yp~y~f~~~kG 208 (208)
T 3kio_A 177 SAASIFAKVARDKAVKNWQFVENLQDLDSDYG 208 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 69999999999999999986686767002698