Query gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 209
No_of_seqs 132 out of 2742
Neff 6.2
Searched_HMMs 33803
Date Wed Jun 1 21:24:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781076.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2etj_A Ribonuclease HII, RNAs 100.0 0 0 333.4 8.5 164 8-175 8-171 (171)
2 >1i39_A Ribonuclease HII, RNAs 100.0 0 0 318.8 8.6 165 8-172 4-181 (182)
3 >3kio_A Ribonuclease H2 subuni 100.0 0 0 312.6 9.2 166 13-178 17-208 (208)
4 >1io2_A Ribonuclease HII; endo 100.0 2.8E-45 0 302.6 11.9 148 25-172 2-167 (168)
5 >1uax_A Ribonuclease HII, ribo 100.0 1.1E-44 0 299.3 10.0 148 25-172 2-167 (168)
6 >1eke_A Ribonuclease HII; endo 100.0 7.8E-44 0 293.9 13.4 148 24-171 1-180 (180)
7 >2d0b_A RNAse HIII, ribonuclea 100.0 7.4E-43 0 287.8 13.1 153 17-169 2-179 (183)
8 >2etj_A Ribonuclease HII, RNAs 99.1 3.9E-11 1.2E-15 89.9 3.0 32 176-207 1-32 (79)
9 >3ga2_A Endonuclease V; alpha- 48.1 7.2 0.00021 19.7 1.1 82 22-125 11-93 (219)
10 >2jo7_A Glycosylphosphatidylin 38.0 14 0.00043 17.8 1.4 28 154-181 10-44 (96)
11 >2hqy_A Conserved hypothetical 27.0 45 0.0013 14.7 3.5 122 65-196 21-169 (172)
12 >1b25_A Protein (formaldehyde 26.5 22 0.00066 16.6 0.7 48 134-194 164-211 (224)
13 >2dsj_A Pyrimidine-nucleoside 23.4 30 0.00089 15.8 0.9 112 54-181 7-138 (182)
14 >1aor_A Aldehyde ferredoxin ox 20.7 22 0.00065 16.6 -0.2 36 156-195 385-420 (422)
15 >2q2k_A Hypothetical protein; 20.5 25 0.00073 16.3 0.0 25 167-191 35-62 (70)
No 1
>>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4) (RNAse HII), structural genomics, joint center for structural genomics; 1.74A {Thermotoga maritima} (A:1-171)
Probab=100.00 E-value=0 Score=333.37 Aligned_cols=164 Identities=44% Similarity=0.589 Sum_probs=154.5
Q ss_pred CCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 88688899999977994899984278777522255999998701082331152028999998755211012307885156
Q gi|254781076|r 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 (209)
Q Consensus 8 ~~p~~~~E~~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~ 87 (209)
..|.+.+|+.++..++.+++|+|||||||+|||||+|||+++.+. .|++|||+||+++|++|++.|++.+.|++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~viGiDEaGrG~~~GPlvvaav~~~~~~--~gi~DSK~Ls~~~r~~l~~~I~~~~~~~v~~i~ 85 (171)
T 2etj_A 8 HHHHHXGIDELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKEI--EGINDSKQLSPAKRERLLDEIXEKAAVGIGIAS 85 (171)
T ss_dssp -----CCGGGGGTTTSSSEEEEEEECTTCSBSCEEEEEEEECSCC--C----------CHHHHHHHHHHHHEEEEEEEEC
T ss_pred HHHCCCCHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEECCCC--CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 110246699999769977998637787885253689999977887--756411029989999876412245416999577
Q ss_pred HHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79985204799988654321002575321101265322466212268711478652002366665477589999999887
Q gi|254781076|r 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 (209)
Q Consensus 88 ~~eID~~ni~~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~ 167 (209)
|++||++||++++..+|.+++.++..+++.++||++..+. ++++.+++|||+++++||||||||||+||++|..|++.
T Consensus 86 p~~id~~ni~~~~~~~~~~~i~~l~~~~~~v~iD~~~~~~--~~~~~~~~KaD~~~~~VaaASIiAKv~RD~~m~~l~~~ 163 (171)
T 2etj_A 86 PEEIDLYNIFNATKLAXNRALENLSVKPSFVLVDGKGIEL--SVPGTCLVKGDQKSKLIGAASIVAKVFRDRLXSEFHRX 163 (171)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSSSCCSEEEEESSSCCC--SSCEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999870938899999999999534210100135777789--97856787788665400577778889999999999997
Q ss_pred CCCCCCCC
Q ss_conf 77988102
Q gi|254781076|r 168 YPDYGFDS 175 (209)
Q Consensus 168 ~p~Ygf~~ 175 (209)
||+|||++
T Consensus 164 yp~ygf~k 171 (171)
T 2etj_A 164 YPQFSFHK 171 (171)
T ss_dssp CTTSCHHH
T ss_pred CCCCCCCC
T ss_conf 87889846
No 2
>>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} (A:1-182)
Probab=100.00 E-value=0 Score=318.82 Aligned_cols=165 Identities=30% Similarity=0.425 Sum_probs=152.9
Q ss_pred CCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 8868889999997799489998427877752225599999870108--23311520289999987552110123078851
Q gi|254781076|r 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85 (209)
Q Consensus 8 ~~p~~~~E~~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~--~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~ 85 (209)
.+|++++|+.|++.++.+++|+|||||||+|||||+|||+++++.. ..||+|||+||+++|++|++.|++++.|++..
T Consensus 4 ~~~~~~~e~~l~~~~~~~viG~DEaGrG~~~GPlvvaav~~~~~~~~~~~gv~DSK~Ls~~~r~~l~~~i~~~~~~~v~~ 83 (182)
T 1i39_A 4 SHHHHHHSSGLVPRGSHMKAGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVLK 83 (182)
T ss_dssp -----------------CEEEEEEECTTCSBSCEEEEEEEESCHHHHHHTTCTTCTTCCHHHHHHHHHHHHHHEEEEEEE
T ss_pred CCCCCHHHHHHHHCCCEEEEEECCCCCCCCHHHEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEE
T ss_conf 53210125569877995899253888777220026999998631041316876343089999999999985200332666
Q ss_pred CCHHHHHHHCHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCC---------CCEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 5679985204799988654321002--575321101265322466---------21226871147865200236666547
Q gi|254781076|r 86 ASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRSIPED---------LPCQAFAVIKGDSISLSIAAASIIAK 154 (209)
Q Consensus 86 ~~~~eID~~ni~~A~~~a~~~ai~~--l~~~~~~ilIDg~~~~~~---------~~~~~~~i~KgD~~~~~VaaASIiAK 154 (209)
++|++||++|+.+++.++|.+++.+ ++..++.++|||+..++. .+.++.+++|||++|++|||||||||
T Consensus 84 i~p~~id~~~~~~~l~~~~~~~~~~~~~~~~~~~i~iD~~~~~~~~~~~l~~~~~~~~~~~~~Kad~~~~~VaaASIiAK 163 (182)
T 1i39_A 84 VSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAK 163 (182)
T ss_dssp ECHHHHHHHTTTSCHHHHHHHHHHHHHHHHCCSEEEEEESSSCCHHHHHHHHHHHCSEEEEEETGGGTCHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 43666788778999999999998776532587632036544573333023554304568999746644663207777669
Q ss_pred HHHHHHHHHHHHHCCCCC
Q ss_conf 758999999988777988
Q gi|254781076|r 155 VTRDRLMRIAHKKYPDYG 172 (209)
Q Consensus 155 v~RD~~m~~l~~~~p~Yg 172 (209)
|+||++|.+|+++||+||
T Consensus 164 v~rd~~m~~l~~~yp~yG 181 (182)
T 1i39_A 164 VEREREIERLKEKFGDFG 181 (182)
T ss_dssp HHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 999999999999776579
No 3
>>3kio_A Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} (A:1-208)
Probab=100.00 E-value=0 Score=312.62 Aligned_cols=166 Identities=24% Similarity=0.266 Sum_probs=143.8
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCC---EEEEEC
Q ss_conf 89999997799489998427877752225599999870108----23311520289999987552110123---078851
Q gi|254781076|r 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA---IISISS 85 (209)
Q Consensus 13 ~~E~~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~---~~~i~~ 85 (209)
.++..++..++.+|||+|||||||+|||||+|||+++++.. ..||+|||+||+++|++|++.|++.+ .|++..
T Consensus 17 ~~~~~~~~~~~~~viGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gi~DSK~Ls~~~r~~l~~~i~~~~~~~~~~v~~ 96 (208)
T 3kio_A 17 SSPVPAVCLKEPCVLGVDEAGRGPVLGPXVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKXEEDGDFVGWALDV 96 (208)
T ss_dssp ECCCCTHHHHSCEEEEEEEECSSCSBSCEEEEEEEEEGGGGGGCCCCCSCC--CCCHHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCHHHCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 58871545589819976276876620340689999812012303226875445299999999999999760676666312
Q ss_pred CCHHHHHHHCH----------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---------CCCEEEEEECCCCCCCHHH
Q ss_conf 56799852047----------9998865432100257532110126532246---------6212268711478652002
Q gi|254781076|r 86 ASHQYIDKHNI----------HKATLDAIYHAVENLQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSI 146 (209)
Q Consensus 86 ~~~~eID~~ni----------~~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~---------~~~~~~~~i~KgD~~~~~V 146 (209)
++|++||++|+ ..++..+|.+++.++...++.++|||+..+. ..+.++.+++|||++|++|
T Consensus 97 ~~p~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iD~~~~~~~~~~~l~~~~~~~~~~~~~KaD~~~~~V 176 (208)
T 3kio_A 97 LSPNLISTSXLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGXPETYQARLQQHFPGIEVTVKAKADSLFPVV 176 (208)
T ss_dssp ECHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSSCCHHHHHHHHHSSTTSEEEEETTGGGTSHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHH
T ss_conf 78999989999899999999999999999999985486522131244577055555411543312148873153110225
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 36666547758999999988777988102899
Q gi|254781076|r 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 (209)
Q Consensus 147 aaASIiAKv~RD~~m~~l~~~~p~Ygf~~nkG 178 (209)
|||||||||+||++|.+|++.||+|||.+|+|
T Consensus 177 AAASIiAKv~RD~~m~~l~~~yp~y~f~~~kG 208 (208)
T 3kio_A 177 SAASIFAKVARDKAVKNWQFVENLQDLDSDYG 208 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 69999999999999999986686767002698
No 4
>>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis KOD1} (A:1-168)
Probab=100.00 E-value=2.8e-45 Score=302.56 Aligned_cols=148 Identities=33% Similarity=0.548 Sum_probs=136.8
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCHHHHHHH--CHH
Q ss_conf 89998427877752225599999870108----23311520289999987552110123-078851567998520--479
Q gi|254781076|r 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKH--NIH 97 (209)
Q Consensus 25 ~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~~~~~eID~~--ni~ 97 (209)
.|+|+|||||||+|||||+|||+++++.. ..|++|||+||+++|++|++.|++++ .|++.+++|+|||+. |++
T Consensus 2 ~iiGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gi~DSK~Ls~~~r~~l~~~i~~~~~~~~v~~~~~~~id~~~~nln 81 (168)
T 1io2_A 2 KIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTLN 81 (168)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHTTGGGCTTCCHHHHHHHHHHHHTTCSEEEEEEECHHHHHTCSSCHH
T ss_pred EEEEECCCCCCCCCCCEEEEEEEECHHHCCHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 19824477877731000689999832534223304885322298989999999999887652000057999865688886
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998865432100257532110126532246-----------621226871147865200236666547758999999988
Q gi|254781076|r 98 KATLDAIYHAVENLQVIPRSALIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 (209)
Q Consensus 98 ~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~-----------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~ 166 (209)
+++..+|.++++++..+++.++||++..+. ..+.++.+++|||++|++||||||+|||+||++|++|++
T Consensus 82 ~~~~~a~~~ai~~l~~~~~~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~KaD~~~~~VaAASIiAKv~rd~~m~~l~~ 161 (168)
T 1io2_A 82 EFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKE 161 (168)
T ss_dssp HHHHHHHHHHHHHCSSCCSEEEEECCSSCHHHHHHHHHHTCSSCCEEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999836799999997876687301112103343554127986456433620108888989999999999999
Q ss_pred HCCCCC
Q ss_conf 777988
Q gi|254781076|r 167 KYPDYG 172 (209)
Q Consensus 167 ~~p~Yg 172 (209)
+||+||
T Consensus 162 ~yp~yG 167 (168)
T 1io2_A 162 EYGEIG 167 (168)
T ss_dssp HHSCCC
T ss_pred HCCCCC
T ss_conf 777469
No 5
>>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase; 2.00A {Pyrococcus horikoshii OT3} (A:1-168)
Probab=100.00 E-value=1.1e-44 Score=299.29 Aligned_cols=148 Identities=32% Similarity=0.526 Sum_probs=135.2
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCCCCC----CCCCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCHHHHHHHCHHHH
Q ss_conf 899984278777522255999998701082----3311520289999987552110123-07885156799852047999
Q gi|254781076|r 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKA 99 (209)
Q Consensus 25 ~IiGvDEaGRG~~~GPlvvaav~~~~~~~~----~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~~~~~eID~~ni~~A 99 (209)
+|+|+|||||||+|||||+|||+++++... .|++|||+||+++|++|++.|++++ .|+++.++|+|||++|++.+
T Consensus 2 ~viGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~~~~~~v~~~~~~~id~~~~n~n 81 (168)
T 1uax_A 2 KVAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDILDDYYVLLVTPKEIDERHHSMN 81 (168)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHHTGGGSTTSCHHHHHHHHHHHHHHSSEEEEEEECHHHHHTCSSCHH
T ss_pred EEEEECCCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf 29824477766730330789999885650356545886400088999999998764204103776302688888630067
Q ss_pred HHHHH--HHHCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88654--32100257532110126532246-----------621226871147865200236666547758999999988
Q gi|254781076|r 100 TLDAI--YHAVENLQVIPRSALIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 (209)
Q Consensus 100 ~~~a~--~~ai~~l~~~~~~ilIDg~~~~~-----------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~ 166 (209)
+++++ .+++.++..++..+++|++..+. ..+.++.+++|||+++++||||||+|||+||++|.+|++
T Consensus 82 ~l~a~~~~~~i~~l~~~~~~~~iD~~~~~~~~~~~l~~~~~~~~~~~~~~~KgD~~~~~VaaASIiAKv~rd~~m~~l~~ 161 (168)
T 1uax_A 82 ELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQ 161 (168)
T ss_dssp HHHHHHHHHHHHTCSSCCSEEEEECTTSCHHHHHHHHHHHCSSCCEEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999741422212410112465311120002368888517877605533431048888879999999999998
Q ss_pred HCCCCC
Q ss_conf 777988
Q gi|254781076|r 167 KYPDYG 172 (209)
Q Consensus 167 ~~p~Yg 172 (209)
.||+||
T Consensus 162 ~yp~yG 167 (168)
T 1uax_A 162 KYGEFG 167 (168)
T ss_dssp HHCCCT
T ss_pred HCCCCC
T ss_conf 787889
No 6
>>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} (A:1-180)
Probab=100.00 E-value=7.8e-44 Score=293.91 Aligned_cols=148 Identities=29% Similarity=0.409 Sum_probs=132.5
Q ss_pred CEEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHH----C
Q ss_conf 489998427877752225599999870108----23311520289999987552110123078851567998520----4
Q gi|254781076|r 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKH----N 95 (209)
Q Consensus 24 ~~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID~~----n 95 (209)
..|+|+|||||||+|||||+|||+++++.. ..|++|||+||+++|+++++.|++++.|+++.++|+|||++ |
T Consensus 1 ~~viGiDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~i~~~~~~~v~~~~~~eid~~~~~~n 80 (180)
T 1eke_A 1 XIIIGIDEAGRGPVLGPXVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGYVEKRILEAEEINQLXNSIN 80 (180)
T ss_dssp CEEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHTTTCC---CCCHHHHHHHHHHHHHHSEEEEEEECHHHHHHHTTTSC
T ss_pred CEEEEECCCCCCCCCCCEEEEEEEECHHHCHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHCC
T ss_conf 95998647787876366279999983310235652699752139999999999999852769999987999658987626
Q ss_pred HHHHHHHHHHHHCCCC------CCCCCCCCCCCCCCCC------------------CCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf 7999886543210025------7532110126532246------------------621226871147865200236666
Q gi|254781076|r 96 IHKATLDAIYHAVENL------QVIPRSALIDGRSIPE------------------DLPCQAFAVIKGDSISLSIAAASI 151 (209)
Q Consensus 96 i~~A~~~a~~~ai~~l------~~~~~~ilIDg~~~~~------------------~~~~~~~~i~KgD~~~~~VaaASI 151 (209)
+++++..++.+++..+ ...+..+++|++..+. .++.++.+++|||++|++||||||
T Consensus 81 ~~~~~~~a~~~ai~~l~~~l~~~~~~~~i~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~KgD~~~~~VaaASI 160 (180)
T 1eke_A 81 LNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASI 160 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSEEEEEEECCSSCHHHHHHHHHHHHHHHHTTTTCEEEEEEETTGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 99999999999999999861788885399986678600101133334444320345788765998411020199999999
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 54775899999998877798
Q gi|254781076|r 152 IAKVTRDRLMRIAHKKYPDY 171 (209)
Q Consensus 152 iAKv~RD~~m~~l~~~~p~Y 171 (209)
||||+||++|.+|++.||+|
T Consensus 161 iAKv~rd~~m~~l~~~yp~Y 180 (180)
T 1eke_A 161 IAKAERDEIIDYYKKIYGDI 180 (180)
T ss_dssp HHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999877799
No 7
>>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A (A:83-265)
Probab=100.00 E-value=7.4e-43 Score=287.83 Aligned_cols=153 Identities=23% Similarity=0.279 Sum_probs=132.9
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 9997799489998427877752225599999870108----233115202899999875521101230788515679985
Q gi|254781076|r 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIISISSASHQYID 92 (209)
Q Consensus 17 ~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID 92 (209)
.+++.+..+++|+|||||||+|||||+|||+++++.. ..||+|||+||+++|++|++.|++++.|.+..++|++||
T Consensus 2 ~~~~~~~~~iiGiDEaGrG~~~GPvvvaav~~~~~~~~~l~~~gv~DSK~Ls~~~r~~l~~~I~~~~~~~~~~i~~~~id 81 (183)
T 2d0b_A 2 AAHQLGSLSAIGSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIAPAIMETVPHAVTVLDNPQYN 81 (183)
T ss_dssp HHHHHTTSCEEEEEEECTTCSBSCEEEEEEEECGGGHHHHHHTCCTTGGGCCHHHHHHHHHHHHHHSCEEEEEECHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCHH
T ss_conf 44436898889881778767300318999998556503566559973120889999999999997548899998323467
Q ss_pred HH-----CHHHHHHHHHHHHCCCCC-----CCCCCCCCCCCCCC-----------CCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf 20-----479998865432100257-----53211012653224-----------6621226871147865200236666
Q gi|254781076|r 93 KH-----NIHKATLDAIYHAVENLQ-----VIPRSALIDGRSIP-----------EDLPCQAFAVIKGDSISLSIAAASI 151 (209)
Q Consensus 93 ~~-----ni~~A~~~a~~~ai~~l~-----~~~~~ilIDg~~~~-----------~~~~~~~~~i~KgD~~~~~VaaASI 151 (209)
++ |++..+..+|.++++.+. ..++.++|||+..+ ...+.++.+++|||+++++||||||
T Consensus 82 ~~~~~~~n~~~l~~~~~~~ai~~l~~~~~~~~~~~i~iD~~~~~~~~~~~l~~~~~~~~~~~~~~~KaD~~~~~VAAASI 161 (183)
T 2d0b_A 82 RWQRSGMPQTKMKALLHNRTLVKLVDAIAPAEPEAIIIDEFLKRDSYFRYLSDEDRIIRERVHCLPKAESVHVSVAAASI 161 (183)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSCHHHHHHHTTTCSSCCCTTEEEETTGGGTCHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 77275126999999999999999998735788766613666781678877502356888864899646543166689999
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 547758999999988777
Q gi|254781076|r 152 IAKVTRDRLMRIAHKKYP 169 (209)
Q Consensus 152 iAKv~RD~~m~~l~~~~p 169 (209)
||||.||+.|.+|+++||
T Consensus 162 iAKv~rd~~m~~L~~~y~ 179 (183)
T 2d0b_A 162 IARYVFLEEMEQLSRAVG 179 (183)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999709
No 8
>>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4) (RNAse HII), structural genomics, joint center for structural genomics; 1.74A {Thermotoga maritima} (A:172-250)
Probab=99.09 E-value=3.9e-11 Score=89.94 Aligned_cols=32 Identities=44% Similarity=0.765 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89999989999999828583010784888640
Q gi|254781076|r 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 (209)
Q Consensus 176 nkGYgT~~H~~ai~~~G~~~~HR~Sf~~vk~l 207 (209)
||||||++|+++|+++|+|++||+||+||+++
T Consensus 1 HKGYgT~~H~~AL~~~Gptp~HR~SF~Pvr~~ 32 (79)
T 2etj_A 1 HKGYATKEHLNEIRKNGVLPIHRLSFEPVLEL 32 (79)
T ss_dssp HTTCCCHHHHHHHHHHCCCTTBCTTSHHHHTT
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 85779699999999878093223894889999
No 9
>>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis} (A:28-246)
Probab=48.09 E-value=7.2 Score=19.66 Aligned_cols=82 Identities=21% Similarity=0.181 Sum_probs=42.3
Q ss_pred CCCEEEEEECCCCCCCCCCEEE-EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCHHHHH
Q ss_conf 9948999842787775222559-999987010823311520289999987552110123078851567998520479998
Q gi|254781076|r 22 NMWPVAGIDEVGRGALAGPVVV-AAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKAT 100 (209)
Q Consensus 22 ~~~~IiGvDEaGRG~~~GPlvv-aav~~~~~~~~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID~~ni~~A~ 100 (209)
+.+.|+|+|=+=.+.-.+.+.+ |.|+++-.....- +..+....-...|-=|..+=.|
T Consensus 11 ~~~~VaGvDvsy~~~~~~~~~~a~~Vvl~~~~~~~v------------~~~~~~~~~~~PYIPG~LaFRE---------- 68 (219)
T 3ga2_A 11 SINTTAGVDLAYWEQDGEPYGVCCIIVIDADTKEVI------------EKVHSXGRISVPYVSGFLAFRE---------- 68 (219)
T ss_dssp GCSEEEEEEEEEEEETTEEEEEEEEEEEETTTCCEE------------EEEEEEEECCCCSSSSCGGGGT----------
T ss_pred CCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCCEE------------EEEEEEEECCCCCCCCHHHHCC----------
T ss_conf 763899998754148886179999999976986089------------9999985315665640454300----------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 8654321002575321101265322
Q gi|254781076|r 101 LDAIYHAVENLQVIPRSALIDGRSI 125 (209)
Q Consensus 101 ~~a~~~ai~~l~~~~~~ilIDg~~~ 125 (209)
.-+|.+++++|+..|+.++|||+..
T Consensus 69 ~P~~l~al~~l~~~PdlilvDG~G~ 93 (219)
T 3ga2_A 69 LPLIIEAAKKLETEPDVFLFDGNGY 93 (219)
T ss_dssp HHHHHHHHHHCSSCCSCEEEEBCSS
T ss_pred CHHHHHHHHHCCCCCCEEEECCCCE
T ss_conf 6799999985689999999818610
No 10
>>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens} (A:129-224)
Probab=38.05 E-value=14 Score=17.78 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHCCC-------CCCCCCCCCCC
Q ss_conf 77589999999887779-------88102899999
Q gi|254781076|r 154 KVTRDRLMRIAHKKYPD-------YGFDSHVGYPT 181 (209)
Q Consensus 154 Kv~RD~~m~~l~~~~p~-------Ygf~~nkGYgT 181 (209)
|+.||.+|+++....|. |||-.---||.
T Consensus 10 ~~~~del~kKf~a~~psflt~eDIs~fLTVP~YG~ 44 (96)
T 2jo7_A 10 KTQHDELLKKFAALTPTFLTSEDISGYLTVPEYGA 44 (96)
T ss_dssp HHHHHHHHHHHHHSSSCCSCHHHHHHHHHCCSTTC
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHEECCCCCC
T ss_conf 42399999988851897664876633210665689
No 11
>>2hqy_A Conserved hypothetical protein; PSI2, MAD, structural genomics, protein structure initiative; HET: COA; 1.80A {Bacteroides thetaiotaomicron vpi-5482} (A:119-290)
Probab=26.98 E-value=45 Score=14.72 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHH---C-------------HHHHHHHHHHHHCC---CCCCCCCCCCCCCC--
Q ss_conf 999987552110123078851567998520---4-------------79998865432100---25753211012653--
Q gi|254781076|r 65 HKKREELYEKITSSAIISISSASHQYIDKH---N-------------IHKATLDAIYHAVE---NLQVIPRSALIDGR-- 123 (209)
Q Consensus 65 ~~~R~~l~~~i~~~~~~~i~~~~~~eID~~---n-------------i~~A~~~a~~~ai~---~l~~~~~~ilIDg~-- 123 (209)
.++|..+-.-++++..|.+..++++.+++. . .+.+...|+.++++ .|+.....+.|||.
T Consensus 21 hkKRNhiN~F~k~y~~~~~~~i~~~~~~e~l~~~~~W~~~~~~~~~~~l~~E~~ai~~~l~~~~~l~l~Gg~i~v~g~i~ 100 (172)
T 2hqy_A 21 QAKRNHINRFRNTYPDYEYTPITPDRIQECLDLEAEWCKVNNCDQQEGTGNERRALIYALHNFEALGLTGGILHVNGKIV 100 (172)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECCGGGHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTHHHHTCEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEE
T ss_conf 55889999999708987999898889999999999998755887542157789999999975787257642799999999
Q ss_pred --CCCCCCC--EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCC-CCCCCCCHHHHHHHHHCCCCCC
Q ss_conf --2246621--2268711478652002366665477589999999887-7798810-2899999899999998285830
Q gi|254781076|r 124 --SIPEDLP--CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK-YPDYGFD-SHVGYPTAKHQQVIKEKGPSCI 196 (209)
Q Consensus 124 --~~~~~~~--~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~-~p~Ygf~-~nkGYgT~~H~~ai~~~G~~~~ 196 (209)
.+-+.++ .-+..+.|||..+.-+-. .+..++.+. .+.|.|- +----|.+--++|=..|-|..+
T Consensus 101 aftige~l~~~t~~ih~EKa~~~~~G~Yq----------~In~~f~~~~~~~~~yiNREeDmG~egLRkaK~SY~P~~l 169 (172)
T 2hqy_A 101 AFTFGMPINHETFGVHVEKADTSIDGAYA----------MINYEFANRIPEQYIYINREEDLGIEGLRKAKLSYQPVTI 169 (172)
T ss_dssp EEEEEEEEETTEEEEEEEEECTTSTTHHH----------HHHHHHHHHSCTTCCEEECCCCTTCHHHHHHHHHTCCSEE
T ss_pred EEEECCCCCCCEEEEEEECCCCCCCCHHH----------HHHHHHHHHHHHCCEEEEHHHCCCCHHHHHHHHCCCCHHE
T ss_conf 99935463787378664114876566899----------9999999988744589931311697778987866694420
No 12
>>1b25_A Protein (formaldehyde ferredoxin oxidoreductase); MOCO, tungstoenzyme, tungsten containing protein, hyperthermophIle; HET: PTT; 1.85A {Pyrococcus furiosus} (A:208-229,A:418-619)
Probab=26.50 E-value=22 Score=16.60 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=34.4
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 8711478652002366665477589999999887779881028999998999999982858
Q gi|254781076|r 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 (209)
Q Consensus 134 ~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~~p~Ygf~~nkGYgT~~H~~ai~~~G~~ 194 (209)
..+.+|..+-. ++.|+.+-..+...|..-||+.+ |-||++ .|+++|+-
T Consensus 164 epl~~Gp~~G~---------~ld~e~~e~~l~~YY~~rGWDe~-G~Pt~e---~L~~LgL~ 211 (224)
T 1b25_A 164 EGLKSGPHKGE---------HLDEKKYDELLSEYYRIRGWDER-GIPKKE---TLKELDLD 211 (224)
T ss_dssp CCCSSSTTTTC---------CCCHHHHHHHHHHHHHHHTBCTT-SCBCHH---HHHHTTCT
T ss_pred CCCCCCCCCCC---------CCCHHHHHHHHHHHHHHCCCCCC-CCCCHH---HHHHCCCH
T ss_conf 88877876788---------68999999999999997398988-837999---99987996
No 13
>>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus HB8} (A:1-87,A:155-240,A:415-423)
Probab=23.39 E-value=30 Score=15.78 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCC--EEEEE---------CCCHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCC-
Q ss_conf 23311520289999987552110123--07885---------1567998520479998865432100257532110126-
Q gi|254781076|r 54 PFGINDSKKISHKKREELYEKITSSA--IISIS---------SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID- 121 (209)
Q Consensus 54 ~~~i~DSK~Ls~~~R~~l~~~i~~~~--~~~i~---------~~~~~eID~~ni~~A~~~a~~~ai~~l~~~~~~ilID- 121 (209)
...+++-..||..+..++++.|.+.- .+.++ -.+++|+ .+...+|.+.-..++......+||
T Consensus 7 I~kl~~G~~Ls~eE~~~~i~~il~g~vsd~QiaAFLmAl~~kGet~eEi------a~lt~AM~~~g~~i~~~~~~~vVDk 80 (182)
T 2dsj_A 7 IREKREGKKHRREDLEAFLLGYLRDEVPDYQVSAWLMAAFLRGLDPEET------LWLTETMARSGKVLDLSGLPHPVDK 80 (182)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHH------HHHHHHHHTSSBCCCCTTSSSBEEE
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHH------HHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 9999779996999999999999879999999999999998729899999------9999999980981788778874044
Q ss_pred ------CCCCCCCCCEEEEEE--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf ------532246621226871--147865200236666547758999999988777988102899999
Q gi|254781076|r 122 ------GRSIPEDLPCQAFAV--IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 (209)
Q Consensus 122 ------g~~~~~~~~~~~~~i--~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~~p~Ygf~~nkGYgT 181 (209)
|+-.|-+ -....+ +-++-.+..--+|||++| +++.--...-++.--|.|.
T Consensus 81 hgTGGDG~l~paD--~~l~~~rd~~~tvds~~li~aSilsK--------K~a~g~~~~v~Dv~~G~ga 138 (182)
T 2dsj_A 81 HSSGGVGDLAPLD--GKLYALRDVTATVESVPLIASSIMSK--------KLAAGARSIVLDVKVGRGA 138 (182)
T ss_dssp EEESSSCGBSHHH--HHHHHHHHTTTCCCCHHHHHHHHHHH--------HHHHTCSEEEEEEEESSST
T ss_pred CCCCCCCCCCHHH--HHHHHHHHCCCCCCCHHHCCCCCCCC--------CCCCCHHHHHHHCCCCCCC
T ss_conf 7899997553178--87766520234566221113432452--------0111056888861675422
No 14
>>1aor_A Aldehyde ferredoxin oxidoreductase; HET: PTE; 2.30A {Pyrococcus furiosus} (A:1-238,A:422-605)
Probab=20.69 E-value=22 Score=16.63 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 5899999998877798810289999989999999828583
Q gi|254781076|r 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 (209)
Q Consensus 156 ~RD~~m~~l~~~~p~Ygf~~nkGYgT~~H~~ai~~~G~~~ 195 (209)
.|+.+-+.+...|..-||+.+ |-||++ .|+++|+..
T Consensus 385 ~~~~~e~~l~~YY~~rGWd~~-G~Pt~e---~L~~LgL~~ 420 (422)
T 1aor_A 385 HTVRLKEMLPRYYKLRGWTED-GKIPKE---KLEELGIAE 420 (422)
T ss_dssp CCCCHHHHHHHHHHHHTCCTT-SCCCHH---HHHHHTCGG
T ss_pred CHHHHHHHHHHHHHHCCCCCC-CCCCHH---HHHHCCCCC
T ss_conf 766799999999997297989-977999---999768913
No 15
>>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus} (A:)
Probab=20.48 E-value=25 Score=16.31 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=15.2
Q ss_pred HCCC-CCCCCCCCCCCH-HH-HHHHHHC
Q ss_conf 7779-881028999998-99-9999982
Q gi|254781076|r 167 KYPD-YGFDSHVGYPTA-KH-QQVIKEK 191 (209)
Q Consensus 167 ~~p~-Ygf~~nkGYgT~-~H-~~ai~~~ 191 (209)
.||+ |+|-.|.--||+ +| ++++++|
T Consensus 35 dypqifdflenvprgtktahirealrry 62 (70)
T 2q2k_A 35 DYPQIFDFLENVPRGTKTAHIREALRRY 62 (70)
T ss_dssp TSHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HCHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 0469999997388776308999999999
Done!