HHsearch results for GI: 254781076 and protein with PDBid: 1eke_A

>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} SCOP: c.55.3.1
Probab=100.00  E-value=0  Score=315.62  Aligned_cols=183  Identities=27%  Similarity=0.351  Sum_probs=146.2

Q ss_pred             EEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHH----HCH
Q ss_conf             89998427877752225599999870108----2331152028999998755211012307885156799852----047
Q gi|254781076|r   25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDK----HNI   96 (209)
Q Consensus        25 ~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID~----~ni   96 (209)
                      .|||+|||||||+|||||+|||+++++..    ..||+|||+||+++|++|++.|++.+.+.+....+.+++.    .++
T Consensus         2 ~viGvDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~kr~~l~~~I~~~~~~~~~~~~~~~~~~~~~~~~~   81 (230)
T 1eke_A            2 IIIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGYVEKRILEAEEINQLMNSINL   81 (230)
T ss_dssp             EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHTTTCC---CCCHHHHHHHHHHHHHHSEEEEEEECHHHHHHHTTTSCH
T ss_pred             EEEEECCCCCCCCCCCEEEEEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEEEEEEEHHHHHHHHH
T ss_conf             79986588877720421699999810113455434686331189889999999999842011431000220233206888


Q ss_pred             HHHHHHHHHHHC----CCC--CCCCCCCCCCCCCCC------------------CCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             999886543210----025--753211012653224------------------66212268711478652002366665
Q gi|254781076|r   97 HKATLDAIYHAV----ENL--QVIPRSALIDGRSIP------------------EDLPCQAFAVIKGDSISLSIAAASII  152 (209)
Q Consensus        97 ~~A~~~a~~~ai----~~l--~~~~~~ilIDg~~~~------------------~~~~~~~~~i~KgD~~~~~VaaASIi  152 (209)
                      ..+...++.+++    ..+  ......+++|++...                  ...+.++.+++|||+++++||||||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kgD~~~~~VAaASIl  161 (230)
T 1eke_A           82 NDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASII  161 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSEEEEEEECCSSCHHHHHHHHHHHHHHHHTTTTCEEEEEEETTGGGTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCHHHEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             89899875432323220012466420220201102454724666543202356778887779985266410355999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--CCCCCCCCCCHHHHHHH
Q ss_conf             47758999999988777988102899999899999998--28583010784888640
Q gi|254781076|r  153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE--KGPSCIHRLTFRPLRNL  207 (209)
Q Consensus       153 AKv~RD~~m~~l~~~~p~Ygf~~nkGYgT~~H~~ai~~--~G~~~~HR~Sf~~vk~l  207 (209)
                      |||+||++|.+|+++||+|||..++||+|.+|.+++.+  +|++++||+||+|++++
T Consensus       162 AKv~Rd~~m~~l~~~~~~~g~g~~~~~~t~~~~~~~~~~~~g~~~~~R~sfkt~k~~  218 (230)
T 1eke_A          162 AKAERDEIIDYYKKIYGDIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRI  218 (230)
T ss_dssp             HHHHHHHHHHHHHHHTSCCTTSSTTSHHHHHHHHHHHHHHSSCCTTBCTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf             999999999998986667898789878999999998762169993010983769999