HHsearch results for GI: 254781076 and protein with PDBid: 1eke_A
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} SCOP: c.55.3.1
Probab=100.00 E-value=0 Score=315.62 Aligned_cols=183 Identities=27% Similarity=0.351 Sum_probs=146.2
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHH----HCH
Q ss_conf 89998427877752225599999870108----2331152028999998755211012307885156799852----047
Q gi|254781076|r 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDK----HNI 96 (209)
Q Consensus 25 ~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID~----~ni 96 (209)
.|||+|||||||+|||||+|||+++++.. ..||+|||+||+++|++|++.|++.+.+.+....+.+++. .++
T Consensus 2 ~viGvDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~kr~~l~~~I~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (230)
T 1eke_A 2 IIIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGYVEKRILEAEEINQLMNSINL 81 (230)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHTTTCC---CCCHHHHHHHHHHHHHHSEEEEEEECHHHHHHHTTTSCH
T ss_pred EEEEECCCCCCCCCCCEEEEEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEEEEEEEHHHHHHHHH
T ss_conf 79986588877720421699999810113455434686331189889999999999842011431000220233206888
Q ss_pred HHHHHHHHHHHC----CCC--CCCCCCCCCCCCCCC------------------CCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 999886543210----025--753211012653224------------------66212268711478652002366665
Q gi|254781076|r 97 HKATLDAIYHAV----ENL--QVIPRSALIDGRSIP------------------EDLPCQAFAVIKGDSISLSIAAASII 152 (209)
Q Consensus 97 ~~A~~~a~~~ai----~~l--~~~~~~ilIDg~~~~------------------~~~~~~~~~i~KgD~~~~~VaaASIi 152 (209)
..+...++.+++ ..+ ......+++|++... ...+.++.+++|||+++++||||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kgD~~~~~VAaASIl 161 (230)
T 1eke_A 82 NDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASII 161 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSEEEEEEECCSSCHHHHHHHHHHHHHHHHTTTTCEEEEEEETTGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 89899875432323220012466420220201102454724666543202356778887779985266410355999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--CCCCCCCCCCHHHHHHH
Q ss_conf 47758999999988777988102899999899999998--28583010784888640
Q gi|254781076|r 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE--KGPSCIHRLTFRPLRNL 207 (209)
Q Consensus 153 AKv~RD~~m~~l~~~~p~Ygf~~nkGYgT~~H~~ai~~--~G~~~~HR~Sf~~vk~l 207 (209)
|||+||++|.+|+++||+|||..++||+|.+|.+++.+ +|++++||+||+|++++
T Consensus 162 AKv~Rd~~m~~l~~~~~~~g~g~~~~~~t~~~~~~~~~~~~g~~~~~R~sfkt~k~~ 218 (230)
T 1eke_A 162 AKAERDEIIDYYKKIYGDIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRI 218 (230)
T ss_dssp HHHHHHHHHHHHHHHTSCCTTSSTTSHHHHHHHHHHHHHHSSCCTTBCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 999999999998986667898789878999999998762169993010983769999