HHsearch results for GI: 254781076 and protein with PDBid: 1io2_A
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis KOD1} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A
Probab=100.00 E-value=0 Score=356.97 Aligned_cols=179 Identities=31% Similarity=0.534 Sum_probs=158.4
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCHHHHH--HHCHH
Q ss_conf 89998427877752225599999870108----23311520289999987552110123-0788515679985--20479
Q gi|254781076|r 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-IISISSASHQYID--KHNIH 97 (209)
Q Consensus 25 ~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~~~~~eID--~~ni~ 97 (209)
.|||||||||||+|||||+|||+++.+.. ..||+|||+||+++|++|++.|++++ .|.+..+++++++ ..|++
T Consensus 2 ~I~GvDEaGRG~l~GPvvvaav~~~~~~~~~l~~~gv~DSK~Ls~~kR~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~n 81 (213)
T 1io2_A 2 KIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTLN 81 (213)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHTTGGGCTTCCHHHHHHHHHHHHTTCSEEEEEEECHHHHHTCSSCHH
T ss_pred EEEEECCCCCCCCCCCEEEEEEEEEHHHCCHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 29935477877731100689999801423033303775201099989999999999776652010157999854678898
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998865432100257532110126532246-----------621226871147865200236666547758999999988
Q gi|254781076|r 98 KATLDAIYHAVENLQVIPRSALIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 (209)
Q Consensus 98 ~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~-----------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~ 166 (209)
+++..+|.+++++|...++.+++||+.... ....+..+++|||++|++||||||||||+||++|.+|++
T Consensus 82 ~~~~~~~~~ai~~l~~~~~~i~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~KgD~~~~~VAAASIlAKv~RD~~m~~l~~ 161 (213)
T 1io2_A 82 EFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKE 161 (213)
T ss_dssp HHHHHHHHHHHHHCSSCCSEEEEECCSSCHHHHHHHHHHTCSSCCEEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999826899999998876776102222035444554127996456433620108889989999999999999
Q ss_pred HCCCCCCCCCCCCCCHHHHHHH-----HHC-CCCCCCCCCHHHHHHH
Q ss_conf 7779881028999998999999-----982-8583010784888640
Q gi|254781076|r 167 KYPDYGFDSHVGYPTAKHQQVI-----KEK-GPSCIHRLTFRPLRNL 207 (209)
Q Consensus 167 ~~p~Ygf~~nkGYgT~~H~~ai-----~~~-G~~~~HR~Sf~~vk~l 207 (209)
.||+|| +||||+.|.+++ +++ |++++||+||+|+|++
T Consensus 162 ~yp~~g----~GY~s~~h~~a~l~~~~~~~g~~~~~hR~sf~~~k~~ 204 (213)
T 1io2_A 162 EYGEIG----SGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKI 204 (213)
T ss_dssp HHSCCC----SSCTTSHHHHHHHHHHHHHHSSCCTTBCTTCHHHHHH
T ss_pred HCCCCC----CCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHH
T ss_conf 777779----9999889999999855400389995201984999999