HHsearch results for GI: 254781076 and protein with PDBid: 1io2_A

>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis KOD1} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A
Probab=100.00  E-value=0  Score=356.97  Aligned_cols=179  Identities=31%  Similarity=0.534  Sum_probs=158.4

Q ss_pred             EEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCHHHHH--HHCHH
Q ss_conf             89998427877752225599999870108----23311520289999987552110123-0788515679985--20479
Q gi|254781076|r   25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-IISISSASHQYID--KHNIH   97 (209)
Q Consensus        25 ~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~~~~~eID--~~ni~   97 (209)
                      .|||||||||||+|||||+|||+++.+..    ..||+|||+||+++|++|++.|++++ .|.+..+++++++  ..|++
T Consensus         2 ~I~GvDEaGRG~l~GPvvvaav~~~~~~~~~l~~~gv~DSK~Ls~~kR~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~n   81 (213)
T 1io2_A            2 KIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTLN   81 (213)
T ss_dssp             EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHTTGGGCTTCCHHHHHHHHHHHHTTCSEEEEEEECHHHHHTCSSCHH
T ss_pred             EEEEECCCCCCCCCCCEEEEEEEEEHHHCCHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             29935477877731100689999801423033303775201099989999999999776652010157999854678898


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998865432100257532110126532246-----------621226871147865200236666547758999999988
Q gi|254781076|r   98 KATLDAIYHAVENLQVIPRSALIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK  166 (209)
Q Consensus        98 ~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~-----------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~  166 (209)
                      +++..+|.+++++|...++.+++||+....           ....+..+++|||++|++||||||||||+||++|.+|++
T Consensus        82 ~~~~~~~~~ai~~l~~~~~~i~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~KgD~~~~~VAAASIlAKv~RD~~m~~l~~  161 (213)
T 1io2_A           82 EFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKE  161 (213)
T ss_dssp             HHHHHHHHHHHHHCSSCCSEEEEECCSSCHHHHHHHHHHTCSSCCEEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999826899999998876776102222035444554127996456433620108889989999999999999


Q ss_pred             HCCCCCCCCCCCCCCHHHHHHH-----HHC-CCCCCCCCCHHHHHHH
Q ss_conf             7779881028999998999999-----982-8583010784888640
Q gi|254781076|r  167 KYPDYGFDSHVGYPTAKHQQVI-----KEK-GPSCIHRLTFRPLRNL  207 (209)
Q Consensus       167 ~~p~Ygf~~nkGYgT~~H~~ai-----~~~-G~~~~HR~Sf~~vk~l  207 (209)
                      .||+||    +||||+.|.+++     +++ |++++||+||+|+|++
T Consensus       162 ~yp~~g----~GY~s~~h~~a~l~~~~~~~g~~~~~hR~sf~~~k~~  204 (213)
T 1io2_A          162 EYGEIG----SGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKI  204 (213)
T ss_dssp             HHSCCC----SSCTTSHHHHHHHHHHHHHHSSCCTTBCTTCHHHHHH
T ss_pred             HCCCCC----CCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHH
T ss_conf             777779----9999889999999855400389995201984999999