HHSEARCH alignment of GI: 254781076 and SCOP domain: d1i39a_

Alignment
>d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=100.00  E-value=0  Score=349.62  Aligned_cols=182  Identities=29%  Similarity=0.377  Sum_probs=151.9

Q ss_pred             EEEEECCCCCCCCCCEEEEEEEECCCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCHHHHHHHH
Q ss_conf             9998427877752225599999870108--23311520289999987552110123078851567998520479998865
Q gi|254781076|r   26 VAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDA  103 (209)
Q Consensus        26 IiGvDEaGRG~~~GPlvvaav~~~~~~~--~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID~~ni~~A~~~a  103 (209)
                      -+|+|||||||||||||+|||+++++..  ..||+|||+||+++|++|++.|++.+.|++..++|++||+.|+.+++.++
T Consensus         2 ~aGiDEaGrG~~~GPvvvaav~~~~~~~~~~~gv~DSK~Ls~~kr~~l~~~I~~~~~~~i~~~~~~~id~~~~~~~~~~~   81 (200)
T d1i39a_           2 KAGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVLKVSPENLDERMAAKTINEI   81 (200)
T ss_dssp             EEEEEEECTTCSBSCEEEEEEEESCHHHHHHTTCTTCTTCCHHHHHHHHHHHHHHEEEEEEEECHHHHHHHTTTSCHHHH
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCHHCCCCCCCHHHHCCCHHHHHHHHHHHHHCCHHHEEEECHHHHHHHHHHHHHHHH
T ss_conf             33774768777414348999998713142413606410078999999887775311011245205566677778888888


Q ss_pred             HHHHCCC--CCCCCCCCCCCCCCCCC---------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             4321002--57532110126532246---------621226871147865200236666547758999999988777988
Q gi|254781076|r  104 IYHAVEN--LQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG  172 (209)
Q Consensus       104 ~~~ai~~--l~~~~~~ilIDg~~~~~---------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~~p~Yg  172 (209)
                      |.++...  +...++.+++|+....+         ..+.++.+++|||++|++||||||||||+||++|.+|+++||+||
T Consensus        82 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~KgD~~~~~VAAASIiAKv~RD~~m~~l~~~~p~yG  161 (200)
T d1i39a_          82 LKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG  161 (200)
T ss_dssp             HHHHHHHHHHHHCCSEEEEEESSSCCHHHHHHHHHHHCSEEEEEETGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHCCCCCCEEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999998621142110320223124431344455663147999633212454019999999999999999999778689


Q ss_pred             CCCCCCCCCHHHHHHHHHC-CCCCCCCCCHHHHHHH
Q ss_conf             1028999998999999982-8583010784888640
Q gi|254781076|r  173 FDSHVGYPTAKHQQVIKEK-GPSCIHRLTFRPLRNL  207 (209)
Q Consensus       173 f~~nkGYgT~~H~~ai~~~-G~~~~HR~Sf~~vk~l  207 (209)
                      |..|+||+|++|++.+.++ |++.+||+||+|+++|
T Consensus       162 ~gy~s~~~t~~~l~~~~~~~~~~~~~R~sfk~~~~i  197 (200)
T d1i39a_         162 SGYASDPRTREVLKEWIASGRIPSCVRMRWKTVSNL  197 (200)
T ss_dssp             SSSTTSHHHHHHHHHHHHHTCCCTTBCTTSHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHH
T ss_conf             967886899999999875089985417894719999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: Class II ribonuclease H (RNase HII)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]