HHSEARCH alignment of GI: 254781076 and SCOP domain: d2etja1

Alignment

Probab=100.00  E-value=0  Score=430.07  Aligned_cols=188  Identities=46%  Similarity=0.664  Sum_probs=178.9

Q ss_pred             HHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCH
Q ss_conf             99977994899984278777522255999998701082331152028999998755211012307885156799852047
Q gi|254781076|r   17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNI   96 (209)
Q Consensus        17 ~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID~~ni   96 (209)
                      .|+++|+.+|||||||||||++||||+|||+++++.  .|++|||+||+++|++++..|++.+.|++++++++|||++||
T Consensus         5 ~l~~~~~~~iiGiDEAGRGpv~GPmVvaav~~~~~~--~gv~DSK~Lt~~kR~~l~~~i~~~~~~~i~~~~~~eid~~ni   82 (221)
T d2etja1           5 ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKEI--EGINDSKQLSPAKRERLLDEIMEKAAVGIGIASPEEIDLYNI   82 (221)
T ss_dssp             GGGTTTSSSEEEEEEECTTCSBSCEEEEEEEECSCC--C----------CHHHHHHHHHHHHEEEEEEEECHHHHHHHCH
T ss_pred             HHHHCCCCEEEEECCCCCCCCCCCEEEEEEEECCCC--CHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCH
T ss_conf             998769977998637887874132468999977986--521563039999998875532203415998565548775292


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99988654321002575321101265322466212268711478652002366665477589999999887779881028
Q gi|254781076|r   97 HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH  176 (209)
Q Consensus        97 ~~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~~p~Ygf~~n  176 (209)
                      ++|+.+||.+++.+|...++.+++||+.++  .+.++.+++|||++|++||||||+|||+||++|.+|++.||+|||+.|
T Consensus        83 ~~a~~~a~~~ai~~l~~~~~~~~~D~~~~~--~~~~~~~~~KaD~~~~~VaAASIiAKv~RD~~m~~l~~~~p~yg~~~~  160 (221)
T d2etja1          83 FNATKLAMNRALENLSVKPSFVLVDGKGIE--LSVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKH  160 (221)
T ss_dssp             HHHHHHHHHHHHHHSSSCCSEEEEESSSCC--CSSCEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             778999999999975222200003466778--888733577487432110388899999999999999987889987358


Q ss_pred             CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHC
Q ss_conf             99999899999998285830107848886403
Q gi|254781076|r  177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS  208 (209)
Q Consensus       177 kGYgT~~H~~ai~~~G~~~~HR~Sf~~vk~l~  208 (209)
                      +||||++|+++|+++|++++||+||+||++|-
T Consensus       161 sGY~T~~h~~ai~~~G~~~~hR~Sw~tvk~~l  192 (221)
T d2etja1         161 KGYATKEHLNEIRKNGVLPIHRLSFEPVLELL  192 (221)
T ss_dssp             TTCCCHHHHHHHHHHCCCTTBCTTSHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             68796999999998680903328829899986

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: Class II ribonuclease H (RNase HII)
species: Thermotoga maritima [TaxId: 2336]