Query gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 209
No_of_seqs 132 out of 2742
Neff 6.2
Searched_HMMs 13730
Date Wed Jun 1 11:27:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781076.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2etja1 c.55.3.1 (A:1-221) Cla 100.0 0 0 430.1 12.9 188 17-208 5-192 (221)
2 d1uaxa_ c.55.3.1 (A:) Class II 100.0 0 0 375.6 11.8 183 25-207 2-204 (211)
3 d1io2a_ c.55.3.1 (A:) Class II 100.0 0 0 358.7 14.6 179 25-207 2-204 (213)
4 d1i39a_ c.55.3.1 (A:) Class II 100.0 0 0 349.6 10.0 182 26-207 2-197 (200)
5 d1ekea_ c.55.3.1 (A:) Class II 100.0 0 0 334.3 16.2 179 25-207 2-218 (225)
6 d1b25a1 a.110.1.1 (A:211-619) 28.9 7.7 0.00056 17.0 0.7 37 154-194 360-396 (409)
7 d1aora1 a.110.1.1 (A:211-605) 26.0 6.1 0.00044 17.7 -0.2 30 162-195 364-393 (395)
8 d1bm9a_ a.4.5.7 (A:) Replicati 21.2 18 0.0013 14.8 1.4 13 154-166 102-114 (120)
9 d1tlha_ a.150.1.1 (A:) Anti-si 19.7 24 0.0017 14.0 1.8 31 144-174 9-42 (89)
10 d2hqya1 d.108.1.4 (A:135-298) 17.6 28 0.002 13.5 3.5 125 65-199 5-156 (164)
No 1
>d2etja1 c.55.3.1 (A:1-221) Class II ribonuclease H (RNase HII) {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=0 Score=430.07 Aligned_cols=188 Identities=46% Similarity=0.664 Sum_probs=178.9
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCH
Q ss_conf 99977994899984278777522255999998701082331152028999998755211012307885156799852047
Q gi|254781076|r 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNI 96 (209)
Q Consensus 17 ~l~~~~~~~IiGvDEaGRG~~~GPlvvaav~~~~~~~~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID~~ni 96 (209)
.|+++|+.+|||||||||||++||||+|||+++++. .|++|||+||+++|++++..|++.+.|++++++++|||++||
T Consensus 5 ~l~~~~~~~iiGiDEAGRGpv~GPmVvaav~~~~~~--~gv~DSK~Lt~~kR~~l~~~i~~~~~~~i~~~~~~eid~~ni 82 (221)
T d2etja1 5 ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKEI--EGINDSKQLSPAKRERLLDEIMEKAAVGIGIASPEEIDLYNI 82 (221)
T ss_dssp GGGTTTSSSEEEEEEECTTCSBSCEEEEEEEECSCC--C----------CHHHHHHHHHHHHEEEEEEEECHHHHHHHCH
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCEEEEEEEECCCC--CHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCH
T ss_conf 998769977998637887874132468999977986--521563039999998875532203415998565548775292
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99988654321002575321101265322466212268711478652002366665477589999999887779881028
Q gi|254781076|r 97 HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 (209)
Q Consensus 97 ~~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~~p~Ygf~~n 176 (209)
++|+.+||.+++.+|...++.+++||+.++ .+.++.+++|||++|++||||||+|||+||++|.+|++.||+|||+.|
T Consensus 83 ~~a~~~a~~~ai~~l~~~~~~~~~D~~~~~--~~~~~~~~~KaD~~~~~VaAASIiAKv~RD~~m~~l~~~~p~yg~~~~ 160 (221)
T d2etja1 83 FNATKLAMNRALENLSVKPSFVLVDGKGIE--LSVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKH 160 (221)
T ss_dssp HHHHHHHHHHHHHHSSSCCSEEEEESSSCC--CSSCEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 778999999999975222200003466778--888733577487432110388899999999999999987889987358
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHC
Q ss_conf 99999899999998285830107848886403
Q gi|254781076|r 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 (209)
Q Consensus 177 kGYgT~~H~~ai~~~G~~~~HR~Sf~~vk~l~ 208 (209)
+||||++|+++|+++|++++||+||+||++|-
T Consensus 161 sGY~T~~h~~ai~~~G~~~~hR~Sw~tvk~~l 192 (221)
T d2etja1 161 KGYATKEHLNEIRKNGVLPIHRLSFEPVLELL 192 (221)
T ss_dssp TTCCCHHHHHHHHHHCCCTTBCTTSHHHHTTC
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 68796999999998680903328829899986
No 2
>d1uaxa_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=100.00 E-value=0 Score=375.62 Aligned_cols=183 Identities=30% Similarity=0.443 Sum_probs=159.5
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCHHHHHHHCHHHH
Q ss_conf 89998427877752225599999870108----23311520289999987552110123-07885156799852047999
Q gi|254781076|r 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKA 99 (209)
Q Consensus 25 ~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~~~~~eID~~ni~~A 99 (209)
.|||||||||||+|||||+|||+++++.. ..||+|||+||+++|++|++.|++.+ .|+++.++|+|||+.|++.+
T Consensus 2 ~I~GvDEaGRG~l~GPvvvaav~~~~~~~~~l~~~gv~DSK~Ls~~kR~~l~~~i~~~~~~~~i~~~s~~eId~~~~~~n 81 (211)
T d1uaxa_ 2 KVAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDILDDYYVLLVTPKEIDERHHSMN 81 (211)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHHTGGGSTTSCHHHHHHHHHHHHHHSSEEEEEEECHHHHHTCSSCHH
T ss_pred EEEEECCCCCCCCHHHHEEEEEEECHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCHH
T ss_conf 09824477866600101899999981422345543775410189999999998774204103775304677765034346
Q ss_pred HHHHHH--HHCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 886543--2100257532110126532246-----------621226871147865200236666547758999999988
Q gi|254781076|r 100 TLDAIY--HAVENLQVIPRSALIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 (209)
Q Consensus 100 ~~~a~~--~ai~~l~~~~~~ilIDg~~~~~-----------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~ 166 (209)
+++||. +++..+...++.+++|+..+.. ..+.++.+++|||+++++||||||||||+||++|.+|++
T Consensus 82 ~l~a~~~~~~~~~l~~~~~~i~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~KgD~~~~~VAAASIiAKv~RD~~m~~l~~ 161 (211)
T d1uaxa_ 82 ELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQ 161 (211)
T ss_dssp HHHHHHHHHHHHTCSSCCSEEEEECTTSCHHHHHHHHHHHCSSCCEEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77788889899863788605642001466422110102478877527876604423533218888889999999999998
Q ss_pred HCCCCCCCCCCCCCCHHHHHH-HHHCC-CCCCCCCCHHHHHHH
Q ss_conf 777988102899999899999-99828-583010784888640
Q gi|254781076|r 167 KYPDYGFDSHVGYPTAKHQQV-IKEKG-PSCIHRLTFRPLRNL 207 (209)
Q Consensus 167 ~~p~Ygf~~nkGYgT~~H~~a-i~~~G-~~~~HR~Sf~~vk~l 207 (209)
+||+|||..|+||+|++|+++ ++++| ++++||+||+|+++|
T Consensus 162 ~~p~yg~~~~~gy~Tk~hl~~~~~~~g~~~~~hR~sf~~~k~~ 204 (211)
T d1uaxa_ 162 KYGEFGSGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETARKI 204 (211)
T ss_dssp HHCCCTTSCTTCHHHHHHHHHHHHHHSSCCTTBCTTSHHHHHH
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHH
T ss_conf 7777799899866089999999887289992031984889999
No 3
>d1io2a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}
Probab=100.00 E-value=0 Score=358.69 Aligned_cols=179 Identities=31% Similarity=0.534 Sum_probs=157.9
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCC-EEEEECCCHHHHH--HHCHH
Q ss_conf 89998427877752225599999870108----23311520289999987552110123-0788515679985--20479
Q gi|254781076|r 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-IISISSASHQYID--KHNIH 97 (209)
Q Consensus 25 ~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~-~~~i~~~~~~eID--~~ni~ 97 (209)
.|||||||||||+|||||+|||+++.+.. ..||+|||+||+++|++|++.|++++ .|.+...++++++ ..|++
T Consensus 2 ~i~GvDEaGRG~l~GPvvvaav~~~~~~~~~l~~~gv~DSK~Ls~~kR~~l~~~I~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (213)
T d1io2a_ 2 KIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTLN 81 (213)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHTTGGGCTTCCHHHHHHHHHHHHTTCSEEEEEEECHHHHHTCSSCHH
T ss_pred CEEEECCCCCCCCCCCEEEEEEEECHHHCCHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 38803376866631100789999820425233313761024476778899999999998775552016888751589999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998865432100257532110126532246-----------621226871147865200236666547758999999988
Q gi|254781076|r 98 KATLDAIYHAVENLQVIPRSALIDGRSIPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 (209)
Q Consensus 98 ~A~~~a~~~ai~~l~~~~~~ilIDg~~~~~-----------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~ 166 (209)
+++.++|.++++++...++.+++||..+.. ....+..+++|||++|++||||||||||+||++|.+|++
T Consensus 82 ~~~~~~~~~ai~~l~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~KgD~~~~~VAAASIlAKv~RD~~m~~l~~ 161 (213)
T d1io2a_ 82 EFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKE 161 (213)
T ss_dssp HHHHHHHHHHHHHCSSCCSEEEEECCSSCHHHHHHHHHHTCSSCCEEEEETTHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99899999999826799999998863122013433202333554216986344212303348899999999999999998
Q ss_pred HCCCCCCCCCCCCCCHHHHHHH-----HHC-CCCCCCCCCHHHHHHH
Q ss_conf 7779881028999998999999-----982-8583010784888640
Q gi|254781076|r 167 KYPDYGFDSHVGYPTAKHQQVI-----KEK-GPSCIHRLTFRPLRNL 207 (209)
Q Consensus 167 ~~p~Ygf~~nkGYgT~~H~~ai-----~~~-G~~~~HR~Sf~~vk~l 207 (209)
.||+|| +||||+.|.+++ +++ |++++||+||+|++++
T Consensus 162 ~y~~~g----~GY~s~~h~~a~l~~~~~~~~~~~~~hR~sf~~~k~~ 204 (213)
T d1io2a_ 162 EYGEIG----SGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKI 204 (213)
T ss_dssp HHSCCC----SSCTTSHHHHHHHHHHHHHHSSCCTTBCTTCHHHHHH
T ss_pred HCCCCC----CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 677579----9999789999999856630589995403995889999
No 4
>d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=100.00 E-value=0 Score=349.62 Aligned_cols=182 Identities=29% Similarity=0.377 Sum_probs=151.9
Q ss_pred EEEEECCCCCCCCCCEEEEEEEECCCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCHHHHHHHH
Q ss_conf 9998427877752225599999870108--23311520289999987552110123078851567998520479998865
Q gi|254781076|r 26 VAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDA 103 (209)
Q Consensus 26 IiGvDEaGRG~~~GPlvvaav~~~~~~~--~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID~~ni~~A~~~a 103 (209)
-+|+|||||||||||||+|||+++++.. ..||+|||+||+++|++|++.|++.+.|++..++|++||+.|+.+++.++
T Consensus 2 ~aGiDEaGrG~~~GPvvvaav~~~~~~~~~~~gv~DSK~Ls~~kr~~l~~~I~~~~~~~i~~~~~~~id~~~~~~~~~~~ 81 (200)
T d1i39a_ 2 KAGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVLKVSPENLDERMAAKTINEI 81 (200)
T ss_dssp EEEEEEECTTCSBSCEEEEEEEESCHHHHHHTTCTTCTTCCHHHHHHHHHHHHHHEEEEEEEECHHHHHHHTTTSCHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCHHCCCCCCCHHHHCCCHHHHHHHHHHHHHCCHHHEEEECHHHHHHHHHHHHHHHH
T ss_conf 33774768777414348999998713142413606410078999999887775311011245205566677778888888
Q ss_pred HHHHCCC--CCCCCCCCCCCCCCCCC---------CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 4321002--57532110126532246---------621226871147865200236666547758999999988777988
Q gi|254781076|r 104 IYHAVEN--LQVIPRSALIDGRSIPE---------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 (209)
Q Consensus 104 ~~~ai~~--l~~~~~~ilIDg~~~~~---------~~~~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~~~p~Yg 172 (209)
|.++... +...++.+++|+....+ ..+.++.+++|||++|++||||||||||+||++|.+|+++||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~KgD~~~~~VAAASIiAKv~RD~~m~~l~~~~p~yG 161 (200)
T d1i39a_ 82 LKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG 161 (200)
T ss_dssp HHHHHHHHHHHHCCSEEEEEESSSCCHHHHHHHHHHHCSEEEEEETGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998621142110320223124431344455663147999633212454019999999999999999999778689
Q ss_pred CCCCCCCCCHHHHHHHHHC-CCCCCCCCCHHHHHHH
Q ss_conf 1028999998999999982-8583010784888640
Q gi|254781076|r 173 FDSHVGYPTAKHQQVIKEK-GPSCIHRLTFRPLRNL 207 (209)
Q Consensus 173 f~~nkGYgT~~H~~ai~~~-G~~~~HR~Sf~~vk~l 207 (209)
|..|+||+|++|++.+.++ |++.+||+||+|+++|
T Consensus 162 ~gy~s~~~t~~~l~~~~~~~~~~~~~R~sfk~~~~i 197 (200)
T d1i39a_ 162 SGYASDPRTREVLKEWIASGRIPSCVRMRWKTVSNL 197 (200)
T ss_dssp SSSTTSHHHHHHHHHHHHHTCCCTTBCTTSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHH
T ss_conf 967886899999999875089985417894719999
No 5
>d1ekea_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=0 Score=334.28 Aligned_cols=179 Identities=28% Similarity=0.441 Sum_probs=152.5
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEECCCCC----CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHH----HCH
Q ss_conf 89998427877752225599999870108----2331152028999998755211012307885156799852----047
Q gi|254781076|r 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDK----HNI 96 (209)
Q Consensus 25 ~IiGvDEaGRG~~~GPlvvaav~~~~~~~----~~~i~DSK~Ls~~~R~~l~~~i~~~~~~~i~~~~~~eID~----~ni 96 (209)
.|||+|||||||+|||||+|||+++.+.. ..||+|||+||+++|+++++.|++.+.+.+++.+|.++|. .|+
T Consensus 2 iviGvDEaGrG~~~GPlvvaav~~~~~~~~~l~~~gv~DSK~Ls~~kr~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (225)
T d1ekea_ 2 IIIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGYVEKRILEAEEINQLMNSINL 81 (225)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHTTTCC---CCCHHHHHHHHHHHHHHSEEEEEEECHHHHHHHTTTSCH
T ss_pred EEEEECCCCCCCCCCCEEEEEEEECHHHCHHHHCCCCCCHHCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHH
T ss_conf 79976587876630422699999840003244304787101199889999999999735450676420134455557789
Q ss_pred HHHHHHHHHHHC----CCCCCC--CCCCCCCCCCCC------------------CCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 999886543210----025753--211012653224------------------66212268711478652002366665
Q gi|254781076|r 97 HKATLDAIYHAV----ENLQVI--PRSALIDGRSIP------------------EDLPCQAFAVIKGDSISLSIAAASII 152 (209)
Q Consensus 97 ~~A~~~a~~~ai----~~l~~~--~~~ilIDg~~~~------------------~~~~~~~~~i~KgD~~~~~VaaASIi 152 (209)
+.++..++.+++ ..+... ...+++|++..+ ...+.++.+++|||++|++|||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KaD~~~~~VAAASIl 161 (225)
T d1ekea_ 82 NDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASII 161 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSEEEEEEECCSSCHHHHHHHHHHHHHHHHTTTTCEEEEEEETTGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 99999887665666676416667731787512135543606665432202456878885779973376431357899999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHC-----CCCCCCCCCHHHHHHH
Q ss_conf 47758999999988777988102899999-8999999982-----8583010784888640
Q gi|254781076|r 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 (209)
Q Consensus 153 AKv~RD~~m~~l~~~~p~Ygf~~nkGYgT-~~H~~ai~~~-----G~~~~HR~Sf~~vk~l 207 (209)
|||+||++|.+|+++||+|| +|||| +.|.+++++| |++++||+||+|++++
T Consensus 162 AKv~RD~~m~~l~~~~~~~G----~Gy~~d~~~~~~~~~~~~~~~g~~~~~R~sfk~~k~i 218 (225)
T d1ekea_ 162 AKAERDEIIDYYKKIYGDIG----SGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRI 218 (225)
T ss_dssp HHHHHHHHHHHHHHHTSCCT----TSSTTSHHHHHHHHHHHHHHSSCCTTBCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCC----CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 99999999999998768899----8799629999999998860269996511880869999
No 6
>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=28.93 E-value=7.7 Score=17.03 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 77589999999887779881028999998999999982858
Q gi|254781076|r 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 (209)
Q Consensus 154 Kv~RD~~m~~l~~~~p~Ygf~~nkGYgT~~H~~ai~~~G~~ 194 (209)
++.|+.+-+.+...|..-||+. .|-||+++ |+++|+-
T Consensus 360 ~~d~~~~e~~l~~YY~~rGWde-~G~Pt~e~---L~~LgL~ 396 (409)
T d1b25a1 360 HLDEKKYDELLSEYYRIRGWDE-RGIPKKET---LKELDLD 396 (409)
T ss_dssp CCCHHHHHHHHHHHHHHHTBCT-TSCBCHHH---HHHTTCT
T ss_pred CCCHHHHHHHHHHHHHHCCCCC-CCCCCHHH---HHHCCCH
T ss_conf 6899999999999999739998-88469999---9987996
No 7
>d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=25.97 E-value=6.1 Score=17.67 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=18.7
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 9998877798810289999989999999828583
Q gi|254781076|r 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 (209)
Q Consensus 162 ~~l~~~~p~Ygf~~nkGYgT~~H~~ai~~~G~~~ 195 (209)
+.+...|...||+.+ |-||+++ |+++|+..
T Consensus 364 ~~l~~YY~~rGWd~~-G~Pt~e~---L~~LgL~d 393 (395)
T d1aora1 364 EMLPRYYKLRGWTED-GKIPKEK---LEELGIAE 393 (395)
T ss_dssp HHHHHHHHHHTCCTT-SCCCHHH---HHHHTCGG
T ss_pred HHHHHHHHHCCCCCC-CCCCHHH---HHHCCCCC
T ss_conf 999999998398988-9879999---99768913
No 8
>d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}
Probab=21.25 E-value=18 Score=14.75 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7758999999988
Q gi|254781076|r 154 KVTRDRLMRIAHK 166 (209)
Q Consensus 154 Kv~RD~~m~~l~~ 166 (209)
|+.=||....+++
T Consensus 102 K~eLdRc~~ll~K 114 (120)
T d1bm9a_ 102 KVELDRCKKLIEK 114 (120)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9889999999999
No 9
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=19.66 E-value=24 Score=13.99 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCC
Q ss_conf 00236666547758999999988---77798810
Q gi|254781076|r 144 LSIAAASIIAKVTRDRLMRIAHK---KYPDYGFD 174 (209)
Q Consensus 144 ~~VaaASIiAKv~RD~~m~~l~~---~~p~Ygf~ 174 (209)
-.|+-|||+-|..||.++..-+. ...+-||.
T Consensus 9 eIit~aSiLIK~~~edI~~~q~~FI~FLNE~G~r 42 (89)
T d1tlha_ 9 EIITVASILIKFSREDIVENRANFIAFLNEIGVT 42 (89)
T ss_dssp HHHHHHHHHHHHTTHHHHHSHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999836999987199999999984788
No 10
>d2hqya1 d.108.1.4 (A:135-298) Hypothetical protein BT3689 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=17.58 E-value=28 Score=13.53 Aligned_cols=125 Identities=11% Similarity=0.013 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHH---C-------------HHHHHHHHHHHHCC---CCCCCCCCCCCCCC--
Q ss_conf 999987552110123078851567998520---4-------------79998865432100---25753211012653--
Q gi|254781076|r 65 HKKREELYEKITSSAIISISSASHQYIDKH---N-------------IHKATLDAIYHAVE---NLQVIPRSALIDGR-- 123 (209)
Q Consensus 65 ~~~R~~l~~~i~~~~~~~i~~~~~~eID~~---n-------------i~~A~~~a~~~ai~---~l~~~~~~ilIDg~-- 123 (209)
.++|..+-.-++++..|.+..++++.|++. . .+.+-..|+.+++. .|+.....+.|||.
T Consensus 5 hkKRNhiN~F~k~y~~~~~~~i~~~~~~e~l~~~~~W~~~~~~~~~~~l~~E~~ai~~~l~~~~~L~l~Gg~l~vdg~i~ 84 (164)
T d2hqya1 5 QAKRNHINRFRNTYPDYEYTPITPDRIQECLDLEAEWCKVNNCDQQEGTGNERRALIYALHNFEALGLTGGILHVNGKIV 84 (164)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECCGGGHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTHHHHTCEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEE
T ss_conf 26668899999878980999899889999999999999974788640378999999999998887284689999999999
Q ss_pred --CCCCCCC--EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCC-CCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf --2246621--226871147865200236666547758999999988-77798810-28999998999999982858301
Q gi|254781076|r 124 --SIPEDLP--CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK-KYPDYGFD-SHVGYPTAKHQQVIKEKGPSCIH 197 (209)
Q Consensus 124 --~~~~~~~--~~~~~i~KgD~~~~~VaaASIiAKv~RD~~m~~l~~-~~p~Ygf~-~nkGYgT~~H~~ai~~~G~~~~H 197 (209)
.+-+.++ .-+..+.|||..+.-+-- .+-.++.. ..++|.|- +----|.+--++|=..|-|..+.
T Consensus 85 aFtiGe~l~~~t~~iH~EKa~~~~~G~Yq----------~In~ef~~~~~~~~~yvNREeDlG~eGLRkAKlSY~P~~~~ 154 (164)
T d2hqya1 85 AFTFGMPINHETFGVHVEKADTSIDGAYA----------MINYEFANRIPEQYIYINREEDLGIEGLRKAKLSYQPVTIL 154 (164)
T ss_dssp EEEEEEEEETTEEEEEEEEECTTSTTHHH----------HHHHHHHHHSCTTCCEEECCCCTTCHHHHHHHHHTCCSEEE
T ss_pred EEEEEEECCCCEEEEEEEECCCCCCCHHH----------HHHHHHHHHHCCCCEEEEHHHCCCCHHHHHHHHCCCCHHHH
T ss_conf 99964242898699998317997531999----------99999998722168698234148966688745444946631
Q ss_pred CC
Q ss_conf 07
Q gi|254781076|r 198 RL 199 (209)
Q Consensus 198 R~ 199 (209)
+|
T Consensus 155 ~K 156 (164)
T d2hqya1 155 EK 156 (164)
T ss_dssp CC
T ss_pred EE
T ss_conf 43
Done!