BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62] (209 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62] gi|254040753|gb|ACT57549.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62] Length = 209 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 209/209 (100%), Positives = 209/209 (100%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS Sbjct: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI Sbjct: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP Sbjct: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV Sbjct: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 >gi|254476664|ref|ZP_05090050.1| ribonuclease HII [Ruegeria sp. R11] gi|214030907|gb|EEB71742.1| ribonuclease HII [Ruegeria sp. R11] Length = 205 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 130/202 (64%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P + LEA + +AG+DEVGRG LAGPV AA+ILDP+ IP G+NDSKK+S K Sbjct: 1 MEHPDYSLEAAAIARGHRRIAGVDEVGRGPLAGPVTAAAVILDPDAIPDGLNDSKKLSAK 60 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 KRE + I SA +SI+ AS + ID NI +A+ A+ AV L P LIDG IP Sbjct: 61 KREAVEADIFQSAEVSIAHASVEEIDSLNILRASHLAMERAVAALDPPPDYLLIDGNLIP 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + + A VIKGD S+SIAAASI+AK+ RDR+M +++P YG+D + GYP+ +H++ Sbjct: 121 KGVQQPAEFVIKGDGKSVSIAAASIVAKLARDRIMVDLAQQFPGYGWDKNAGYPSKQHRE 180 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 + E G + HR +F+P+ + Sbjct: 181 ALIEIGVTPHHRRSFKPVHKIL 202 >gi|149202924|ref|ZP_01879895.1| Ribonuclease H [Roseovarius sp. TM1035] gi|149143470|gb|EDM31506.1| Ribonuclease H [Roseovarius sp. TM1035] Length = 207 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 126/199 (63%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S +R Sbjct: 4 PDFTHERAALSEGYLRIAGVDEVGRGPLAGPVTAAAVILDPGNIPEGLNDSKKLSAARRA 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L E I +SA S++ AS ID+ NI +A A+ A+ L P LIDG IP L Sbjct: 64 ILCEAIHASAEASVAHASVAEIDQLNILRAAHLAMERAIAALDPQPDLVLIDGNLIPRGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A A+++GD++S+SIAAASI+AK+ RD++M +++P YG++ + GYP+ H++ + Sbjct: 124 TLPARAIVRGDAVSVSIAAASIVAKIRRDQIMWDLAQQFPGYGWERNAGYPSKSHREALL 183 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + HR +F+P+ N+ Sbjct: 184 NLGVTPHHRRSFKPVHNIL 202 >gi|84687971|ref|ZP_01015835.1| ribonuclease HII [Maritimibacter alkaliphilus HTCC2654] gi|84664003|gb|EAQ10503.1| ribonuclease HII [Rhodobacterales bacterium HTCC2654] Length = 208 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 94/201 (46%), Positives = 132/201 (65%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 + P + E + + VAG+DEVGRG LAGPV AA+IL P+NIP G+NDSKK+S KK Sbjct: 3 DGPDYSYETAAFARGLARVAGVDEVGRGPLAGPVTAAAVILGPDNIPDGLNDSKKLSAKK 62 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R+ L++ I + A + I+ A+ + ID +NI +A+ A+ AVE L +P LIDG IP Sbjct: 63 RDALFDAIMAGAQVGIAHATVEEIDTYNILRASHIAMLRAVEALGTVPDHLLIDGNLIPR 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 A AVIKGD SLSIAAASI+AKVTRDR+M +++P YG++ + GYP+ H Sbjct: 123 GCTVSAEAVIKGDGKSLSIAAASIVAKVTRDRIMVDLAQQHPGYGWERNAGYPSKSHISA 182 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 ++E G + HR +F+P+ N+ Sbjct: 183 LQELGVTPHHRRSFKPVHNIL 203 >gi|83950881|ref|ZP_00959614.1| ribonuclease HII [Roseovarius nubinhibens ISM] gi|83838780|gb|EAP78076.1| ribonuclease HII [Roseovarius nubinhibens ISM] Length = 209 Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 90/199 (45%), Positives = 133/199 (66%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + VAG+DEVGRG LAGPV AA++LDP IP G+NDSK ++ K+RE Sbjct: 3 PDYRFEDEAIAQGFGVVAGVDEVGRGPLAGPVTAAAVVLDPARIPAGLNDSKALTPKRRE 62 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I + A +SI+ AS + ID+ NI +A+ A+ AV L V AL+DG +P DL Sbjct: 63 ALFDEIAAVAHVSIAHASVEEIDEINILRASHLAMERAVAGLPVAAGFALVDGNLLPRDL 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A AVIKGD++SLSI+AASI+AK+ RDR+M + YP YG++++ GYP+ H++ ++ Sbjct: 123 RIPARAVIKGDALSLSISAASIMAKICRDRIMWDLAQHYPGYGWETNAGYPSKSHKEALR 182 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + HR +F+P+ N+ Sbjct: 183 NLGVTPHHRRSFKPVHNIL 201 >gi|254511405|ref|ZP_05123472.1| ribonuclease HII [Rhodobacteraceae bacterium KLH11] gi|221535116|gb|EEE38104.1| ribonuclease HII [Rhodobacteraceae bacterium KLH11] Length = 205 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 133/199 (66%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P++ELE + + VAG+DEVGRG LAGPVV AA+IL+P++ P G+NDSKK++ K+R Sbjct: 4 PNYELEQALLARGYVRVAGVDEVGRGPLAGPVVAAAVILNPDDFPEGLNDSKKLTAKRRG 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L + + A ++++ AS ID+HNI +A+ A+ AV L P LIDG IP L Sbjct: 64 ALDLALRAQASVAVAQASVAEIDEHNILRASHLAMVRAVAALNPAPDFLLIDGNMIPRGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + AV++GD+ S+SIA ASI+AK RDRLM +++P YG++++ GYPT +H++ ++ Sbjct: 124 KIPSQAVVRGDARSVSIAGASIVAKNWRDRLMVDLAQQHPGYGWEANAGYPTKQHREALR 183 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + HR +F+P+ N+ Sbjct: 184 NLGVTPHHRRSFKPVHNIL 202 >gi|126724759|ref|ZP_01740602.1| ribonuclease HII [Rhodobacterales bacterium HTCC2150] gi|126705923|gb|EBA05013.1| ribonuclease HII [Rhodobacterales bacterium HTCC2150] Length = 209 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 99/199 (49%), Positives = 137/199 (68%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E +K + VAG+DEVGRG LAGPV AA+ILDP+NIP G+NDSKK+S KKR+ Sbjct: 6 PDYSFERAAIDKGIKIVAGVDEVGRGPLAGPVTAAAVILDPDNIPEGLNDSKKLSAKKRD 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+++I + A++SI+ AS ID+ NI +A+ A+ A++ L +P+ ALIDGR IP++ Sbjct: 66 LLFDQIMNVAMVSIAHASVAEIDEINIRQASHLAMVRAIQGLDQLPQLALIDGRDIPKET 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC A+IKGD S+SIAAASI+AKVTRDRLM + +P YG+D + GYPT H + Sbjct: 126 PCSGQAIIKGDGKSMSIAAASIVAKVTRDRLMVDLAQHHPGYGWDKNAGYPTKSHIAALN 185 Query: 190 EKGPSCIHRLTFRPLRNLS 208 E G + HR +F P+ + Sbjct: 186 ELGVTQHHRCSFGPVHKML 204 >gi|126738666|ref|ZP_01754371.1| ribonuclease HII [Roseobacter sp. SK209-2-6] gi|126720465|gb|EBA17171.1| ribonuclease HII [Roseobacter sp. SK209-2-6] Length = 205 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 125/202 (61%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E+P LE R+ +AG+DEVGRG LAGPV AA+IL P G+NDSKK+S K Sbjct: 1 MEQPDDSLEQTARKNGYPRIAGVDEVGRGPLAGPVTAAAVILPLEGYPQGLNDSKKLSAK 60 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 KR L E+I +A +SI+ AS + ID NI KA+ A+ AV L P LIDG IP Sbjct: 61 KRAVLAEEILQTAEVSIAEASVEEIDSINILKASHLAMERAVAALDPAPDYLLIDGNLIP 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L A AVIKGD S+SIAAASI+AK RD M +++P YG++ + GYP+ +H++ Sbjct: 121 AGLTIPAEAVIKGDGKSVSIAAASIVAKEARDECMVDLAQQFPGYGWEKNAGYPSKQHRE 180 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 ++E G + HR +F+P+ + Sbjct: 181 ALQELGVTPHHRKSFKPVHKIL 202 >gi|85705987|ref|ZP_01037083.1| ribonuclease HII [Roseovarius sp. 217] gi|85669575|gb|EAQ24440.1| ribonuclease HII [Roseovarius sp. 217] Length = 206 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 89/199 (44%), Positives = 129/199 (64%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S +R Sbjct: 4 PDFSHEHTAHSQGYRRIAGVDEVGRGPLAGPVTAAAVILDPGNIPEGLNDSKKLSAARRA 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I ++A +S++ AS ID+ NI +A+ A+ A+ L + P ALIDG IP L Sbjct: 64 ALCGVILATAHVSVAHASVDEIDRLNILRASHLAMERAIAGLGLAPDLALIDGNLIPRGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A A+++GD+ISLSIAAASI+AK+ RD++M +++P YG++ + GYP+ H+Q + Sbjct: 124 TLPARAIVRGDAISLSIAAASIVAKIRRDQIMWDLAQQFPGYGWERNAGYPSKSHKQALL 183 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + HR +F+P+ N+ Sbjct: 184 NLGVTPHHRRSFKPVHNIL 202 >gi|260432295|ref|ZP_05786266.1| ribonuclease HII [Silicibacter lacuscaerulensis ITI-1157] gi|260416123|gb|EEX09382.1| ribonuclease HII [Silicibacter lacuscaerulensis ITI-1157] Length = 229 Score = 214 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 130/199 (65%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F LE + + VAG+DEVGRG LAGPVV AA+IL+P +IP G+NDSKK++ ++R Sbjct: 23 PDFNLEREMMAQGHARVAGVDEVGRGPLAGPVVAAAVILNPQDIPKGLNDSKKLTARRRL 82 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L + + + SI+ AS ID NI A+ A+ AV L+ P LIDG IP+ L Sbjct: 83 ALDADLRARSEFSIAEASVAEIDDLNILYASHLAMVRAVAALKPAPDYVLIDGNLIPKGL 142 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A AV++GD+ S+SIAAASI+AK RD+LM +++P YG++++ GYP+ +H++ ++ Sbjct: 143 TVPARAVVRGDAKSVSIAAASILAKNWRDQLMVDLAQQHPGYGWETNAGYPSKQHREALQ 202 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + HR +F+P+ N+ Sbjct: 203 NLGVTPHHRRSFKPVHNIL 221 >gi|163739877|ref|ZP_02147284.1| Ribonuclease H [Phaeobacter gallaeciensis BS107] gi|161386911|gb|EDQ11273.1| Ribonuclease H [Phaeobacter gallaeciensis BS107] Length = 205 Score = 214 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 129/202 (63%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 + P + LEA + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S K Sbjct: 1 MDYPDYTLEAAAHGRGQIRIAGVDEVGRGPLAGPVTAAAVILDPENIPEGLNDSKKLSAK 60 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +RE + I + A +SI+ AS + ID NI +A+ A+ AV L P LIDG IP Sbjct: 61 RREAVEASIFAQAEVSIAHASVEEIDSLNILRASHLAMERAVAALDPAPDYLLIDGNLIP 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + L A VIKGD+ S+SIAAASI+AK RDR+M +++P YG++ + GYP+ +H++ Sbjct: 121 KGLLQPAEFVIKGDAKSVSIAAASIVAKQARDRIMVDLAQQFPGYGWEKNAGYPSKQHRE 180 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 + G + HR +F+P+ + Sbjct: 181 ALVSLGVTPHHRRSFKPVHKML 202 >gi|163743378|ref|ZP_02150758.1| ribonuclease HII [Phaeobacter gallaeciensis 2.10] gi|161383372|gb|EDQ07761.1| ribonuclease HII [Phaeobacter gallaeciensis 2.10] Length = 205 Score = 214 bits (544), Expect = 8e-54, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 129/202 (63%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 + P + LEA + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S K Sbjct: 1 MDYPDYTLEAAAHGRGQIRIAGVDEVGRGPLAGPVTAAAVILDPENIPEGLNDSKKLSAK 60 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +RE + I + A ++I+ AS + ID NI +A+ A+ AV L P LIDG IP Sbjct: 61 RREAVEASIFAQAEVAIAHASVEEIDSLNILRASHLAMERAVAALDPAPDYLLIDGNLIP 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + L A VIKGD+ S+SIAAASI+AK RDR+M +++P YG++ + GYP+ +H++ Sbjct: 121 KGLLQPAEFVIKGDAKSVSIAAASIVAKQARDRIMVDLAQQFPGYGWEKNAGYPSKQHRE 180 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 + G + HR +F+P+ + Sbjct: 181 ALVSLGVTPHHRRSFKPVHKML 202 >gi|254440277|ref|ZP_05053771.1| ribonuclease HII [Octadecabacter antarcticus 307] gi|198255723|gb|EDY80037.1| ribonuclease HII [Octadecabacter antarcticus 307] Length = 206 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 127/202 (62%), Gaps = 3/202 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + + + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSK +S KKRE Sbjct: 5 PDFTFEQDLFARGILRIAGVDEVGRGPLAGPVTAAAVILDPANIPDGLNDSKALSRKKRE 64 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ---VIPRSALIDGRSIP 126 L I +SA +SI+ A+ + ID+ NI +A+ A+ A+ L ALIDG +P Sbjct: 65 LLEPLIFASAEVSIAHATVEEIDEINILRASHLAMERAIAGLGAGLNRVDHALIDGNMVP 124 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L A +IKGD+ SLSIAAASI+AK+ RDR+M + YP YG+D++ GY + H Sbjct: 125 RGLIIPATTIIKGDARSLSIAAASIVAKICRDRIMVELAQHYPGYGWDTNAGYGSKSHIS 184 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 ++ G + HR +F+P+ N+ Sbjct: 185 ALQNIGVTPHHRRSFKPVHNML 206 >gi|260574050|ref|ZP_05842055.1| Ribonuclease H [Rhodobacter sp. SW2] gi|259023516|gb|EEW26807.1| Ribonuclease H [Rhodobacter sp. SW2] Length = 213 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 124/202 (61%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P F E + VAG+DEVGRG LAGPV AA+ L P +IP G+NDSKK+S Sbjct: 4 PPFPDFSFETAALARGARVVAGVDEVGRGPLAGPVTAAAVRLFPGSIPLGLNDSKKLSAA 63 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +RE L+ + A +SI+ A+ ID+ NI +A+ A+ A+ L ALIDG +P Sbjct: 64 RREALFHALMEQAQVSIAHATVAEIDELNILRASHLAMQRALAGLPEPCDHALIDGNLLP 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L C A A++KGD SLSIAAASIIAKVTRD +M +++P YG++++ GYPT H Sbjct: 124 RGLSCAAQAIVKGDGRSLSIAAASIIAKVTRDAIMVDLAQQHPGYGWEANAGYPTKAHLA 183 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 + G + HR +F+P+ N+ Sbjct: 184 ALLNLGVTPWHRRSFKPVHNIL 205 >gi|254485800|ref|ZP_05099005.1| ribonuclease HII [Roseobacter sp. GAI101] gi|214042669|gb|EEB83307.1| ribonuclease HII [Roseobacter sp. GAI101] Length = 205 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 130/199 (65%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P FE E + VAG+DEVGRG LAGPV AA++LDP IP G+NDSKK++ + RE Sbjct: 3 PDFEFERDAYARGFARVAGVDEVGRGPLAGPVTAAAVVLDPARIPEGLNDSKKLTKRARE 62 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY++I + A +SI+ AS + I++ NI +A+ A+ A++ L+ ALIDG +P DL Sbjct: 63 RLYDEIMAVADVSIAHASVEEIEELNILRASHLAMVRALDGLRTPADFALIDGNMVPRDL 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++ VIKGD+ S SI+AASI+AK+ RD +M +++P YG+++++GY + H + ++ Sbjct: 123 AIKSQTVIKGDARSQSISAASIMAKICRDCVMLSLAQQHPGYGWETNMGYGSKSHIEALQ 182 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + HR F+P+ + Sbjct: 183 NLGVTPHHRRLFKPVHKML 201 >gi|310817212|ref|YP_003965176.1| ribonuclease HII [Ketogulonicigenium vulgare Y25] gi|308755947|gb|ADO43876.1| ribonuclease HII [Ketogulonicigenium vulgare Y25] Length = 209 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 90/201 (44%), Positives = 133/201 (66%), Gaps = 2/201 (0%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 +RP + E + + VAG+DEVGRG LAGPV AA+ILDP NIP G+NDSKK+S K+ Sbjct: 3 DRPDYSFELAAQARGFARVAGVDEVGRGPLAGPVTAAAVILDPANIPEGLNDSKKLSAKR 62 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R+ L+++I + A +SI+ A+ ID+ NI +A+ A+ A+ + L+DG +P+ Sbjct: 63 RDALFDQIMAVAQVSIAHATVAEIDEMNILRASHVAMCRAL--AGLPADYVLVDGNLLPK 120 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DL A A+I GD+ SLSIAAASIIAKV RDR+M +++P YG++ + GYP+A H+ Sbjct: 121 DLSLPAEALISGDARSLSIAAASIIAKVVRDRIMVDLAQQFPAYGWERNAGYPSAAHRAA 180 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 + G + HR +F+P+ N+ Sbjct: 181 LIAHGVTPHHRRSFKPVHNIL 201 >gi|99082490|ref|YP_614644.1| ribonuclease HII [Ruegeria sp. TM1040] gi|122984106|sp|Q1GD84|RNH2_SILST RecName: Full=Ribonuclease HII; Short=RNase HII gi|99038770|gb|ABF65382.1| RNase HII [Ruegeria sp. TM1040] Length = 229 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 84/202 (41%), Positives = 126/202 (62%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 + P LE + + +AG+DEVGRG LAGPV AA++LD ++P G+NDSKK++ + Sbjct: 25 MDYPDLSLEEAAQARGYTRIAGVDEVGRGPLAGPVTAAAVVLDLADLPEGLNDSKKLTPR 84 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +R L +I + A +++ AS + ID HNI +A+ A+ AV L P LIDG IP Sbjct: 85 RRAALEPEIMARASYAVAHASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDGNLIP 144 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L A AV+KGD SLSIAAASI+AK RDR+M +++P YG++ + GYP+ +H+ Sbjct: 145 RALHIPAEAVVKGDGRSLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHRD 204 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 + + G + HR +F+P+ + Sbjct: 205 ALIKIGVTPHHRRSFKPVHKIL 226 >gi|327190563|gb|EGE57656.1| ribonuclease HII protein [Rhizobium etli CNPAF512] Length = 229 Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L V L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +H GY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I++ GP +HR++FRPLR Sbjct: 191 TAQHRAGIEKHGPCSLHRMSFRPLRK 216 >gi|83855284|ref|ZP_00948814.1| ribonuclease HII [Sulfitobacter sp. NAS-14.1] gi|83843127|gb|EAP82294.1| ribonuclease HII [Sulfitobacter sp. NAS-14.1] Length = 205 Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 131/200 (65%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P FE E + VAG+DEVGRG LAGPV AA++LDP+ IP G+NDSKK++ R Sbjct: 2 KPDFEFERAAHARGFERVAGVDEVGRGPLAGPVTAAAVVLDPDRIPEGLNDSKKLTKPAR 61 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E LYE++ A +S++ AS + I++ NI +A+ A+ A+E L+ ALIDG IP D Sbjct: 62 ERLYEELLQVADVSVAHASVEEIEELNILRASHLAMLRALEGLKTPADYALIDGNVIPRD 121 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A VIKGD+ S SI+AASI AK+ RD +M +++P YG+++++GY + KH + + Sbjct: 122 LTLPAEPVIKGDARSQSISAASIAAKICRDCVMLSLAQQHPGYGWETNMGYGSKKHMEAL 181 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 ++ G + HR F+P+ N+ Sbjct: 182 QKIGVTPHHRRLFKPVHNML 201 >gi|83941807|ref|ZP_00954269.1| ribonuclease HII [Sulfitobacter sp. EE-36] gi|83847627|gb|EAP85502.1| ribonuclease HII [Sulfitobacter sp. EE-36] Length = 238 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 87/200 (43%), Positives = 131/200 (65%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P FE E + VAG+DEVGRG LAGPV AA++LDP+ IP G+NDSKK++ R Sbjct: 35 KPDFEFERAAHARGFERVAGVDEVGRGPLAGPVTAAAVVLDPDRIPEGLNDSKKLTKTAR 94 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E LYE++ A +S++ AS + I++ NI +A+ A+ A+E L+ ALIDG IP D Sbjct: 95 ERLYEELLQVADVSVAHASVEEIEELNILRASHLAMLRALEGLKTPADYALIDGNMIPRD 154 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A V+KGD+ S SI+AASI AK+ RD +M +++P YG+++++GY + KH + + Sbjct: 155 LTLPAETVVKGDARSQSISAASIAAKICRDCVMLSLAQQHPGYGWETNMGYGSKKHMEAL 214 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 ++ G + HR F+P+ N+ Sbjct: 215 QKIGVTPHHRRLFKPVHNML 234 >gi|254452091|ref|ZP_05065528.1| ribonuclease HII [Octadecabacter antarcticus 238] gi|198266497|gb|EDY90767.1| ribonuclease HII [Octadecabacter antarcticus 238] Length = 209 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 126/202 (62%), Gaps = 1/202 (0%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P F E + + +AG+DEVGRG LAGPV AA+ILDP NIP G+NDSK +S K Sbjct: 9 PSGPDFTFEEDLISRGAICIAGVDEVGRGPLAGPVTAAAVILDPANIPDGLNDSKMLSRK 68 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 KRE L I ++A +SI+ A+ + ID+ NI +A+ A+ A+ L ALIDG IP Sbjct: 69 KREALEPLIFANAEVSIAHATVEEIDEINILRASHLAMERAIAGLG-RVDHALIDGNMIP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L A +IKGD+ SLSIAAASI+AK+ RDR+M ++YP YG+D++ GY + H Sbjct: 128 RGLIIPATTIIKGDARSLSIAAASIVAKICRDRIMVGLAQQYPGYGWDTNAGYGSKSHIS 187 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 + G + HR +F+P+ + Sbjct: 188 ALHRLGVTPHHRRSFKPVHYML 209 >gi|86356514|ref|YP_468406.1| ribonuclease HII [Rhizobium etli CFN 42] gi|123512870|sp|Q2KBV7|RNH2_RHIEC RecName: Full=Ribonuclease HII; Short=RNase HII gi|86280616|gb|ABC89679.1| ribonuclease HII protein [Rhizobium etli CFN 42] Length = 229 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 106/206 (51%), Positives = 147/206 (71%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + +++P P F+LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTVPLVPDFKLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L + L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +H GY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I++ GP +HR++FRPLR Sbjct: 191 TAQHRAGIEKHGPCSLHRMSFRPLRK 216 >gi|190890579|ref|YP_001977121.1| ribonuclease HII protein [Rhizobium etli CIAT 652] gi|238692497|sp|B3PRG0|RNH2_RHIE6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|190695858|gb|ACE89943.1| ribonuclease HII protein [Rhizobium etli CIAT 652] Length = 229 Score = 211 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L V L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +H GY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I++ GP +HR++FRPLR Sbjct: 191 TAQHRTGIEKHGPCSLHRMSFRPLRK 216 >gi|116250704|ref|YP_766542.1| ribonuclease HII [Rhizobium leguminosarum bv. viciae 3841] gi|166226643|sp|Q1MKS7|RNH2_RHIL3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|115255352|emb|CAK06427.1| putative ribonuclease HII [Rhizobium leguminosarum bv. viciae 3841] Length = 229 Score = 211 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L + L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +HVGY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHSVFPDYGFAAHVGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I+ GP +HR++FRPLR Sbjct: 191 TAQHRAGIERHGPCSLHRMSFRPLRK 216 >gi|241203307|ref|YP_002974403.1| ribonuclease HII [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857197|gb|ACS54864.1| Ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 229 Score = 210 bits (535), Expect = 9e-53, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 145/206 (70%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 11 LLFDTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPRRIPEGLNDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L + L Sbjct: 71 KQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLT 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +HVGY Sbjct: 131 DGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHSVFPDYGFAAHVGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I+ GP +HR++FRPLR Sbjct: 191 TAQHRAGIERHGPCSLHRMSFRPLRK 216 >gi|295706298|ref|YP_003599373.1| ribonuclease HII [Bacillus megaterium DSM 319] gi|294803957|gb|ADF41023.1| ribonuclease HII [Bacillus megaterium DSM 319] Length = 255 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 90/195 (46%), Positives = 125/195 (64%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AG+DEVGRG LAGPVV AA+IL P+ G+ DSKK+S KREE Y Sbjct: 60 AYENELYNQGATYIAGVDEVGRGPLAGPVVAAAVILPPDFFLPGLTDSKKLSEAKREEFY 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E+I SA+ I I + ID NI++AT A+ A+E L V P LID +P P Sbjct: 120 EEICKSAVAIGIGIIDAEVIDSINIYEATKKAMTEAIELLAVQPDELLIDAMKLPV--PI 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAA+S+IAKVTRDR+M+ ++YP YGF+ H+GY T +H + I++ Sbjct: 178 SQQSIIKGDATSISIAASSVIAKVTRDRMMKELGERYPAYGFEKHMGYGTKQHLEAIQQY 237 Query: 192 GPSCIHRLTFRPLRN 206 G HR +F P++N Sbjct: 238 GILPEHRRSFAPIKN 252 >gi|119384834|ref|YP_915890.1| ribonuclease H [Paracoccus denitrificans PD1222] gi|189043634|sp|A1B3V0|RNH2_PARDP RecName: Full=Ribonuclease HII; Short=RNase HII gi|119374601|gb|ABL70194.1| RNase HII [Paracoccus denitrificans PD1222] Length = 210 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 123/199 (61%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + LE VAG+DEVGRG LAGPV AA+ILD IP G+NDSKK++ K+RE Sbjct: 4 PDYSLEEAALRSGARFVAGVDEVGRGPLAGPVTAAAVILDAGCIPEGLNDSKKLTAKRRE 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L E + + ++ AS + ID+ NI +A+ A+ A+ L+ P L+DG +P DL Sbjct: 64 ALAELVMARCDWAVGHASVEEIDRLNILRASHLAMCRAIAGLRQRPCLVLVDGNMLPRDL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AV+ GD+ LSIAAASI+AK+ RDR+M +++P YG++++ GYPT H+Q + Sbjct: 124 DLPGQAVVGGDARCLSIAAASILAKLLRDRIMVDLAQQHPGYGWEANAGYPTPAHRQALL 183 Query: 190 EKGPSCIHRLTFRPLRNLS 208 + G + HR +F P+ + Sbjct: 184 DLGVTPYHRRSFAPVHKIL 202 >gi|189485020|ref|YP_001955961.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|254808005|sp|B1GZ18|RNH2_UNCTG RecName: Full=Ribonuclease HII; Short=RNase HII gi|170286979|dbj|BAG13500.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 210 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 119/197 (60%), Gaps = 1/197 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F + K +PVAGIDE GRG LAGPVV A +IL ++ +NDSK++S KKRE L Sbjct: 6 FSFDRNFYNKGFYPVAGIDEAGRGPLAGPVVAAVVILPKDSAIPYLNDSKQLSEKKREIL 65 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E I +A ++ +++ ID+ NI +AT A+ AV L+ P LIDG L Sbjct: 66 FEIIKETALDYAVELVNNEIIDEINILQATFLAMSRAVLKLKTQPDLYLIDGNRKVHGLS 125 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD+ S IAAASI+AKV+RD++M K+YP Y F+ H GY T KH + +K+ Sbjct: 126 FNQETIVGGDAKSACIAAASILAKVSRDKMMLEYAKQYPVYEFEKHKGYGTKKHIEALKK 185 Query: 191 KGPSCIHRLTFRPLRNL 207 G IHRLTF P+ ++ Sbjct: 186 HGICPIHRLTFSPVNDI 202 >gi|163745410|ref|ZP_02152770.1| ribonuclease HII [Oceanibulbus indolifex HEL-45] gi|161382228|gb|EDQ06637.1| ribonuclease HII [Oceanibulbus indolifex HEL-45] Length = 218 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 83/202 (41%), Positives = 127/202 (62%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P FE E + +AG+DEVGRG LAGPV AA++ IP G+NDSKK++ + Sbjct: 9 PMIPDFEFERGAITRGFRTIAGVDEVGRGPLAGPVTAAAVVFTEGQIPEGLNDSKKLTAR 68 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE LY++I S A++ ++ A+ + I++HNI +A+ A+ A+ L ALIDG +P Sbjct: 69 ARERLYDEIMSMAVVCVAHATVEEIEEHNILRASHLAMTRALAGLACAADYALIDGNMLP 128 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 DL A V+KGD+ LSI+AASI+AK RDRLM +++P YG+++++GY + H Sbjct: 129 RDLSLPAQPVVKGDARCLSISAASIVAKTVRDRLMVDLAQQHPGYGWETNMGYGSKSHMA 188 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 +++ G + HR F+P+ N+ Sbjct: 189 ALRDLGVTPHHRRLFKPIHNIL 210 >gi|328957389|ref|YP_004374775.1| ribonuclease HII [Carnobacterium sp. 17-4] gi|328673713|gb|AEB29759.1| ribonuclease HII [Carnobacterium sp. 17-4] Length = 257 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 96/198 (48%), Positives = 121/198 (61%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++E E+ VAGIDEVGRG LAGPVV AA+IL + INDSK++S KRE L Sbjct: 61 LQIEQFFWEQGTQFVAGIDEVGRGPLAGPVVAAAVILPQDFNVLEINDSKQLSSAKREVL 120 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I SA I I HQ IDK NI++AT A+ AVE L P LID ++ + Sbjct: 121 FDQIQESALAIGIGIKDHQVIDKVNIYQATKLAMIEAVEQLPQQPEQLLID--AMHLPIT 178 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + IKGDS SLSIAAASIIAKVTRDR+M YP YGF + GY T H + +++ Sbjct: 179 IPQESFIKGDSKSLSIAAASIIAKVTRDRMMAEYDTLYPGYGFSKNAGYGTKIHLEGLEK 238 Query: 191 KGPSCIHRLTFRPLRNLS 208 G IHR TF P++NL Sbjct: 239 HGICPIHRKTFAPVKNLL 256 >gi|294500952|ref|YP_003564652.1| ribonuclease HII [Bacillus megaterium QM B1551] gi|294350889|gb|ADE71218.1| ribonuclease HII [Bacillus megaterium QM B1551] Length = 255 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 89/195 (45%), Positives = 124/195 (63%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AG+DEVGRG LAGPVV AA+IL P+ G+ DSKK+S KRE Y Sbjct: 60 AYENELYSQGATYIAGVDEVGRGPLAGPVVAAAVILPPDFFLPGLTDSKKLSEAKREAFY 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E+I SA+ I I + ID NI++AT A+ A+E L V P LID +P P Sbjct: 120 EEICKSAVAIGIGIIGAEVIDSINIYEATKKAMTEAIELLAVQPDELLIDAMKLPV--PI 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAA+S+IAKVTRDR+M+ ++YP YGF+ H+GY T +H + I++ Sbjct: 178 SQQSIIKGDATSISIAASSVIAKVTRDRMMKELGERYPAYGFEKHMGYGTKQHLEAIEKY 237 Query: 192 GPSCIHRLTFRPLRN 206 G HR +F P++N Sbjct: 238 GILPEHRRSFAPIKN 252 >gi|52080208|ref|YP_078999.1| ribonuclease HII [Bacillus licheniformis ATCC 14580] gi|52785585|ref|YP_091414.1| ribonuclease HII [Bacillus licheniformis ATCC 14580] gi|319646013|ref|ZP_08000243.1| ribonuclease HII [Bacillus sp. BT1B_CT2] gi|73917597|sp|Q65JP3|RNH2_BACLD RecName: Full=Ribonuclease HII; Short=RNase HII gi|52003419|gb|AAU23361.1| ribonuclease HII [Bacillus licheniformis ATCC 14580] gi|52348087|gb|AAU40721.1| RnhB [Bacillus licheniformis ATCC 14580] gi|317391763|gb|EFV72560.1| ribonuclease HII [Bacillus sp. BT1B_CT2] Length = 255 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 118/194 (60%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +R + +AGIDE GRG LAGPVV AA+IL + G+ DSKK+S +KRE+ Y Sbjct: 61 SFERSLRARGYQYIAGIDEAGRGPLAGPVVAAAVILKEDCEILGLTDSKKLSKQKREDYY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A + + A ID+ NI++A+ A+ AV+ L V P LID S+ D Sbjct: 121 SYIMEEAAAVGVGIADAHEIDELNIYEASKAAMLKAVQALDVAPDYLLIDAMSLAVDT-- 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++IKGD+ S SIAA + IAKVTRDRLM +KYP YGF+ H GY T +H + + Sbjct: 179 EQSSIIKGDAKSASIAAGACIAKVTRDRLMDEYAEKYPLYGFEKHKGYGTKEHLNALAKY 238 Query: 192 GPSCIHRLTFRPLR 205 GPS IHR +F P++ Sbjct: 239 GPSPIHRRSFAPVK 252 >gi|86136899|ref|ZP_01055477.1| ribonuclease HII [Roseobacter sp. MED193] gi|85826223|gb|EAQ46420.1| ribonuclease HII [Roseobacter sp. MED193] Length = 226 Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 93/205 (45%), Positives = 130/205 (63%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 + E+P LE EK VAG+DEVGRG LAGPV AA++LD ++P G+NDSKK+ Sbjct: 19 DKTMEQPDNSLEIAAHEKGYLRVAGVDEVGRGPLAGPVTAAAVVLDMADLPEGLNDSKKL 78 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S KKR L ++I + A +SI+ AS + ID NI +A+ A+ AV L P LIDG Sbjct: 79 SAKKRVVLAKEIFARAQVSIAEASVEEIDSINILRASHLAMERAVAALDPPPDYLLIDGN 138 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP DL A AV+KGD S+SIAAASI+AK RD LM +++P YG++ + GYP+ + Sbjct: 139 LIPRDLTIDAQAVVKGDGKSVSIAAASIVAKEARDNLMVDLAQQFPRYGWEKNAGYPSKQ 198 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H++ + E G + HR +F+P+ + Sbjct: 199 HREALVELGVTPHHRRSFKPVHKIL 223 >gi|126734213|ref|ZP_01749960.1| ribonuclease HII [Roseobacter sp. CCS2] gi|126717079|gb|EBA13943.1| ribonuclease HII [Roseobacter sp. CCS2] Length = 207 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 96/200 (48%), Positives = 138/200 (69%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P F E+ ++ VAG+DEVGRG LAGPVV AA+IL+P NIP G+NDSKK++ K+R Sbjct: 3 KPDFSFESAAHQRGFIHVAGVDEVGRGPLAGPVVAAAVILNPANIPDGLNDSKKLTAKRR 62 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LY+++ + A +SI+ A+ ID+HNI +A+ A+ AV L VI ALIDG IP D Sbjct: 63 DALYDELLAVADVSIAEATVAEIDEHNILRASHIAMVRAVAGLSVIAAHALIDGNMIPRD 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L + +IKGD SLSIAAASI+AKV RDR M +++P YG++ + GYPTA+H+ + Sbjct: 123 LAISSQTIIKGDGRSLSIAAASIMAKVWRDRHMVALAQQHPHYGWEKNAGYPTAQHKLGL 182 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 ++ G + HR +F+P+ N+ Sbjct: 183 QQFGVTEHHRRSFKPIHNIL 202 >gi|254472008|ref|ZP_05085409.1| ribonuclease HII [Pseudovibrio sp. JE062] gi|211959210|gb|EEA94409.1| ribonuclease HII [Pseudovibrio sp. JE062] Length = 217 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 94/207 (45%), Positives = 130/207 (62%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F + P+ P E V + AGIDE GRG AGPVVVAA L+ +N+P G+NDS Sbjct: 8 LFDIAFPDAPDLRFERSVEQDLQGRFAGIDEAGRGPWAGPVVVAAASLNYDNLPEGLNDS 67 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KK++ KREEL+E+I A +S+ S Q ID+ NI +ATL + +L V + I Sbjct: 68 KKLTEAKREELFEQILEVADVSVCVQSAQTIDRLNIREATLQGMRTCARSLSVPVKRFFI 127 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG+ +P LP + A+IKGD L+I+AASI+AKVTRDRLM + +P+YGF H GY Sbjct: 128 DGKDVPHHLPQEGQAMIKGDGRCLAISAASIVAKVTRDRLMVKMDRYFPEYGFAKHKGYG 187 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T +HQ+ + G + +HR +FRP+R L Sbjct: 188 TKQHQEALAAHGVTPLHRCSFRPIREL 214 >gi|163761011|ref|ZP_02168089.1| putative ribonuclease HII [Hoeflea phototrophica DFL-43] gi|162281792|gb|EDQ32085.1| putative ribonuclease HII [Hoeflea phototrophica DFL-43] Length = 221 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 109/204 (53%), Positives = 138/204 (67%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 P P E + + PVAG+DE GRG LAGPVV AA+ILDP IP G+NDSK Sbjct: 16 LFPDYPASPDDRFERHFSKDGLLPVAGLDEAGRGPLAGPVVAAAVILDPARIPEGLNDSK 75 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S KKRE L+++I ++A++SI+SAS + ID +I KA+L A+ A+ L V ALID Sbjct: 76 ALSRKKRETLFDQIIATAMVSIASASPREIDVTDIRKASLTAMRRALIALPVRAGYALID 135 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 GR IP L C A++KGD+ SLSIAAASI+AKV RDR+M A YP YGFDSH GY + Sbjct: 136 GRDIPPGLTCPGRALVKGDARSLSIAAASIVAKVMRDRMMMRAAILYPVYGFDSHKGYGS 195 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLR 205 AKH I+E GP +HR++FRPLR Sbjct: 196 AKHLAAIREHGPCPLHRMSFRPLR 219 >gi|171912710|ref|ZP_02928180.1| Ribonuclease H [Verrucomicrobium spinosum DSM 4136] Length = 233 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 87/202 (43%), Positives = 124/202 (61%), Gaps = 3/202 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 RP F E +R++ VAG+DE GRG LAGPV VAA+IL + ++DSK+++ +R Sbjct: 27 RPTFRYEMELRQEGHQVVAGVDEAGRGPLAGPVSVAAVILPDDFTHAELHDSKQLTELRR 86 Query: 69 EELYEKITSSAI--ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 E +Y+++ A ID+ NI +AT + AV+ L ++P + LIDG + Sbjct: 87 ERIYDELMGRADVLWCHVMVEVDEIDRINILQATRMGMRRAVQGLSMLPHAVLIDG-TPV 145 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D P A++KGD++SLSIAAAS+IAKV RDRLMR A YP YGFD H GY T +H + Sbjct: 146 PDFPVPHRALVKGDALSLSIAAASVIAKVARDRLMRQAALDYPVYGFDQHKGYGTPEHLE 205 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 ++ GP +HR +F P+ L+ Sbjct: 206 ALRRHGPCPLHRRSFSPVSQLT 227 >gi|149912480|ref|ZP_01901014.1| Ribonuclease H [Roseobacter sp. AzwK-3b] gi|149812886|gb|EDM72712.1| Ribonuclease H [Roseobacter sp. AzwK-3b] Length = 211 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 91/203 (44%), Positives = 128/203 (63%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + P F LE VAG+DEVGRG LAGPV AA++LD IP G+NDSK+++ Sbjct: 1 MSTLPDFTLETAAHAAGHLRVAGVDEVGRGPLAGPVTAAAVVLDILRIPEGLNDSKRLTA 60 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 K+R L++ I A +SI+ AS + IDK NI +A+ A+ A+ L P ALIDG I Sbjct: 61 KRRAVLHDAILGMAEVSIAHASVEEIDKLNILRASHLAMERAIAGLATPPDMALIDGNLI 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P L A AV+KGD SLSIAAASI+AK+TRDR+M +++P YG++++ GYP+ H Sbjct: 121 PRGLQIPAQAVVKGDGKSLSIAAASIVAKITRDRIMWDLAQQFPGYGWETNAGYPSKSHI 180 Query: 186 QVIKEKGPSCIHRLTFRPLRNLS 208 ++ G + HR +F+P+ N+ Sbjct: 181 AALQNIGLTPHHRRSFKPVHNIL 203 >gi|254462688|ref|ZP_05076104.1| ribonuclease HII [Rhodobacterales bacterium HTCC2083] gi|206679277|gb|EDZ43764.1| ribonuclease HII [Rhodobacteraceae bacterium HTCC2083] Length = 208 Score = 207 bits (528), Expect = 6e-52, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 131/199 (65%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + + + VAG+DEVGRG LAGPV AA+ILDP IP G+NDSKK+S KKR+ Sbjct: 6 PDYSFEQRAQARGLSIVAGVDEVGRGPLAGPVTAAAVILDPMRIPQGLNDSKKLSAKKRQ 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++ + A +SI+ AS + ID+ NI +A+ A+ AV L+ P LIDG IP L Sbjct: 66 ALHDDLLLCADVSIAHASVEEIDELNILRASHLAMERAVAGLKQRPNHLLIDGNMIPRGL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + A++KGDS S+SI+AASI+AK+ RD +M + YP YG++++ GYP+ H+ ++ Sbjct: 126 AGLSEAIVKGDSRSVSISAASIVAKICRDYVMWDLGQHYPGYGWETNAGYPSKSHKLALE 185 Query: 190 EKGPSCIHRLTFRPLRNLS 208 + G + HR +F+P+ N+ Sbjct: 186 KLGVTPHHRRSFKPVHNIL 204 >gi|149183639|ref|ZP_01862056.1| ribonuclease HII [Bacillus sp. SG-1] gi|148848656|gb|EDL62889.1| ribonuclease HII [Bacillus sp. SG-1] Length = 258 Score = 207 bits (527), Expect = 8e-52, Method: Composition-based stats. Identities = 91/197 (46%), Positives = 125/197 (63%), Gaps = 3/197 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +R++ +AGIDEVGRG LAGPVV AA+IL + GINDSKK+S K+RE Y+ Sbjct: 63 FENELRDQGFELIAGIDEVGRGPLAGPVVAAAVILPADFCLLGINDSKKLSEKQREAFYQ 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 IT AI S S Q ID+ NI++A+ A+ A+ L V P LID ++ P Sbjct: 123 YITEEAIAWSTGIISPQEIDELNIYQASKKAMVTALNTLNVKPDHLLID--AMELGSPYP 180 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SIAAASI+AKVTRDR+M + Y YG + ++GY T +H + + E G Sbjct: 181 EMSLIKGDARSISIAAASIVAKVTRDRMMEEYSQVYSGYGLEKNMGYGTKEHLEGLNEFG 240 Query: 193 PSCIHRLTFRPLRNLSV 209 PS IHR +F P++ L + Sbjct: 241 PSPIHRKSFAPVKELML 257 >gi|228922591|ref|ZP_04085891.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837020|gb|EEM82361.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 254 Score = 207 bits (526), Expect = 9e-52, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y+ Sbjct: 59 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYD 118 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 119 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + I+ G Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 236 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 237 VLDEHRKSFAPIKDM 251 >gi|255261565|ref|ZP_05340907.1| ribonuclease HII [Thalassiobium sp. R2A62] gi|255103900|gb|EET46574.1| ribonuclease HII [Thalassiobium sp. R2A62] Length = 205 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 93/198 (46%), Positives = 131/198 (66%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 FE E V G+DEVGRG LAGPV AA+ LDPN IP G+NDSKK+S KKR+ Sbjct: 4 DFEFERAAMADGALRVVGVDEVGRGPLAGPVTAAAVWLDPNAIPEGLNDSKKLSAKKRDA 63 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 LY ++ A +SI+ A+ + ID+HNI +A+ A+ AVE L V P ALIDG +P P Sbjct: 64 LYAELLQVADVSIAHATVEEIDEHNILRASHIAMIRAVEGLAVAPDYALIDGNMVPRGFP 123 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q+ +IKGD+ S+SI+AASI+AKV RD +M +++P+YG+DS+ GYP+ H+ + + Sbjct: 124 IQSQTIIKGDARSVSISAASIMAKVCRDYVMVDLAQQHPEYGWDSNAGYPSKSHKNALLK 183 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + HR +F+P+ N+ Sbjct: 184 YGVTPHHRRSFKPVHNIL 201 >gi|218233890|ref|YP_002368638.1| ribonuclease HII [Bacillus cereus B4264] gi|226736814|sp|B7HDW0|RNH2_BACC4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|218161847|gb|ACK61839.1| ribonuclease HII [Bacillus cereus B4264] Length = 257 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLDEHRKSFAPIKDM 254 >gi|294675759|ref|YP_003576374.1| ribonuclease HII [Rhodobacter capsulatus SB 1003] gi|294474579|gb|ADE83967.1| ribonuclease HII [Rhodobacter capsulatus SB 1003] Length = 211 Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 86/203 (42%), Positives = 128/203 (63%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + P E + +AG+DEVGRG L GPV AA++LD + +P G+NDSKK+S Sbjct: 1 MSTAPDTRFEQAALARGFTRIAGVDEVGRGPLCGPVTAAAVVLDLSCLPEGLNDSKKLSA 60 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 K+R L +IT++A +S++ AS ID NI +A+ A+ A+E L+ P LIDG + Sbjct: 61 KRRAALVAQITATADVSVAHASVAEIDALNILQASHLAMIRAIEGLKTPPDHVLIDGNRL 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P+ L A A++KGD+ S+SIAAASI+AK RD LM ++YP YG++ + GYPT H Sbjct: 121 PKALTISAEAIVKGDARSVSIAAASILAKEIRDALMVDLAQQYPGYGWERNAGYPTRDHL 180 Query: 186 QVIKEKGPSCIHRLTFRPLRNLS 208 Q + + G + +HR +F+P+ N+ Sbjct: 181 QALLDLGVTPVHRRSFKPVHNIL 203 >gi|229192006|ref|ZP_04318976.1| Ribonuclease [Bacillus cereus ATCC 10876] gi|228591557|gb|EEK49406.1| Ribonuclease [Bacillus cereus ATCC 10876] Length = 254 Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 59 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 118 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S + ID NI++AT A+ AV NL P+ LID +P P Sbjct: 119 EIKVQAIAIGVGIVSPEVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEAIQVHG 236 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 237 VLDEHRKSFAPIKDM 251 >gi|228960053|ref|ZP_04121717.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047524|ref|ZP_04193114.1| Ribonuclease [Bacillus cereus AH676] gi|229111308|ref|ZP_04240861.1| Ribonuclease [Bacillus cereus Rock1-15] gi|229146408|ref|ZP_04274779.1| Ribonuclease [Bacillus cereus BDRD-ST24] gi|229152036|ref|ZP_04280231.1| Ribonuclease [Bacillus cereus m1550] gi|228631385|gb|EEK88019.1| Ribonuclease [Bacillus cereus m1550] gi|228637041|gb|EEK93500.1| Ribonuclease [Bacillus cereus BDRD-ST24] gi|228672084|gb|EEL27375.1| Ribonuclease [Bacillus cereus Rock1-15] gi|228723771|gb|EEL75126.1| Ribonuclease [Bacillus cereus AH676] gi|228799569|gb|EEM46522.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001] Length = 254 Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 59 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 118 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 119 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + I+ G Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 236 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 237 VLDEHRKSFAPIKDM 251 >gi|209548122|ref|YP_002280039.1| ribonuclease HII [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238056781|sp|B5ZS20|RNH2_RHILW RecName: Full=Ribonuclease HII; Short=RNase HII gi|209533878|gb|ACI53813.1| Ribonuclease H [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 229 Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 108/205 (52%), Positives = 145/205 (70%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 ++P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDSK Sbjct: 12 LFQAVPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSK 71 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L + L D Sbjct: 72 QLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLTD 131 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G +P L C AVIKGD+ S+SIAAASI+AKVTRDR+M AH +PDYGF +HVGY T Sbjct: 132 GLDVPPGLDCPGQAVIKGDARSVSIAAASIVAKVTRDRMMARAHHVFPDYGFAAHVGYGT 191 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206 A+H+ I++ GP +HR++FRPLR Sbjct: 192 AQHRAGIEKLGPCSLHRMSFRPLRK 216 >gi|228940925|ref|ZP_04103484.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973854|ref|ZP_04134430.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980444|ref|ZP_04140754.1| Ribonuclease [Bacillus thuringiensis Bt407] gi|228779264|gb|EEM27521.1| Ribonuclease [Bacillus thuringiensis Bt407] gi|228785879|gb|EEM33882.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818761|gb|EEM64827.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941606|gb|AEA17502.1| ribonuclease HII [Bacillus thuringiensis serovar chinensis CT-43] Length = 257 Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSYTPQHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|228954113|ref|ZP_04116142.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229081092|ref|ZP_04213602.1| Ribonuclease [Bacillus cereus Rock4-2] gi|228702136|gb|EEL54612.1| Ribonuclease [Bacillus cereus Rock4-2] gi|228805679|gb|EEM52269.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 257 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEAIQVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLDEHRKSFAPIKDM 254 >gi|229071335|ref|ZP_04204558.1| Ribonuclease [Bacillus cereus F65185] gi|229180113|ref|ZP_04307457.1| Ribonuclease [Bacillus cereus 172560W] gi|228603322|gb|EEK60799.1| Ribonuclease [Bacillus cereus 172560W] gi|228711789|gb|EEL63741.1| Ribonuclease [Bacillus cereus F65185] Length = 254 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 59 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 118 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 119 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYGTKQHLEAIQVHG 236 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 237 VLDEHRKSFAPIKDM 251 >gi|118590790|ref|ZP_01548191.1| ribonuclease HII [Stappia aggregata IAM 12614] gi|118436766|gb|EAV43406.1| ribonuclease HII [Stappia aggregata IAM 12614] Length = 228 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 94/205 (45%), Positives = 133/205 (64%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F + P+ P +E + G+DE GRG AGPVV AA+ILD + +P G+NDS Sbjct: 19 LFDLAFPDSPDLAVERKHAAAFDGRLCGVDEAGRGPWAGPVVTAAVILDYDRLPDGLNDS 78 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KK++ +REEL+E+I +SA +S++SAS ID NI ATL A+ AV +L ++P L+ Sbjct: 79 KKLTEARREELFEQIVASAHVSLASASPATIDAVNIRTATLSAMVRAVNHLPLVPDYVLV 138 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGR +P L A+IKGD L +AAASI+AKVTRDR+M ++PDYGF H GY Sbjct: 139 DGRDVPLGLKQAGQALIKGDGRCLCVAAASIVAKVTRDRMMVHLDARFPDYGFAQHKGYG 198 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 +HQQ ++ GP+ HR++F+P+R Sbjct: 199 VPQHQQALERHGPTVHHRMSFKPVR 223 >gi|254503735|ref|ZP_05115886.1| ribonuclease HII [Labrenzia alexandrii DFL-11] gi|222439806|gb|EEE46485.1| ribonuclease HII [Labrenzia alexandrii DFL-11] Length = 218 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 89/205 (43%), Positives = 125/205 (60%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F + P+ P ++E + + G+DE GRG AGPVV AA+ILD N+P G+NDS Sbjct: 7 LFDLAFPDNPDLKIEKKHAKSYDGLLCGVDEAGRGPWAGPVVTAAVILDYANVPAGLNDS 66 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KK++ KRE L+ +I ++ + +SAS +DK NI ATL A+ AV L +P+ LI Sbjct: 67 KKLTEAKRESLFGEILKTSWVCAASASPATVDKLNIRTATLSAMVRAVNGLPRVPQYVLI 126 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGR +P L A+IKGD L +AAASI+AKV RDR+M ++P YGF H GY Sbjct: 127 DGRDVPPGLAQPGQALIKGDGRCLCVAAASIVAKVLRDRMMVALEPEFPGYGFAQHKGYG 186 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 HQ + GP+ HR++F+P+R Sbjct: 187 VPAHQAALDTLGPTAHHRMSFKPVR 211 >gi|329767413|ref|ZP_08258938.1| hypothetical protein HMPREF0428_00635 [Gemella haemolysans M341] gi|328836102|gb|EGF85793.1| hypothetical protein HMPREF0428_00635 [Gemella haemolysans M341] Length = 258 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 90/196 (45%), Positives = 126/196 (64%), Gaps = 2/196 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV AA+IL ++ G+NDSKK+S KKREE+YE Sbjct: 58 YENKCYNNGCKYICGIDEVGRGPLAGPVVAAAVILKKDSYFEGLNDSKKLSAKKREEIYE 117 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + A+ +I + I+K+NI+ A A+ AVE L+V P LID E+ P Sbjct: 118 QIKNEAVAYAICEVDNIEIEKYNIYNAARIAMQRAVEKLEVKPDFLLIDAM-PFENYPIP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 F+++KGD S+SIAAAS++AKV RD LM+ KKYP+Y F+++ GY T KH + +KE G Sbjct: 177 NFSMVKGDEKSVSIAAASVMAKVYRDNLMKEYAKKYPNYDFENNAGYGTKKHLEGLKEYG 236 Query: 193 PSCIHRLTFRPLRNLS 208 + IHR F P++++ Sbjct: 237 VTPIHRRDFEPIKSML 252 >gi|77462008|ref|YP_351512.1| ribonuclease HII [Rhodobacter sphaeroides 2.4.1] gi|221640959|ref|YP_002527221.1| ribonuclease HII [Rhodobacter sphaeroides KD131] gi|332559935|ref|ZP_08414257.1| ribonuclease HII [Rhodobacter sphaeroides WS8N] gi|97189247|sp|Q3J6H3|RNH2_RHOS4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807985|sp|B9KRA6|RNH2_RHOSK RecName: Full=Ribonuclease HII; Short=RNase HII gi|77386426|gb|ABA77611.1| ribonuclease HII [Rhodobacter sphaeroides 2.4.1] gi|221161740|gb|ACM02720.1| Ribonuclease HII [Rhodobacter sphaeroides KD131] gi|332277647|gb|EGJ22962.1| ribonuclease HII [Rhodobacter sphaeroides WS8N] Length = 212 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 86/199 (43%), Positives = 125/199 (62%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + V G+DEVGRG LAGPV AA+ L P IP G+NDSKK++ +RE Sbjct: 6 PDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLTAPRRE 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + A +SI+ AS + ID+ NI +A+ A+ A+ L P ALIDG +P+ L Sbjct: 66 MLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAMGRALAGLPSRPDFALIDGHMVPKGL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + A++KGD++ LSIAAASI+AKV RDR+M +++P YG+ ++ GY T H Q + Sbjct: 126 GHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTKDHLQALL 185 Query: 190 EKGPSCIHRLTFRPLRNLS 208 GP+ HR +F+P+ N+ Sbjct: 186 NLGPTPHHRRSFKPVHNIL 204 >gi|126460898|ref|YP_001042012.1| ribonuclease HII [Rhodobacter sphaeroides ATCC 17029] gi|166226644|sp|A3PFX4|RNH2_RHOS1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|126102562|gb|ABN75240.1| Ribonuclease H [Rhodobacter sphaeroides ATCC 17029] Length = 212 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 86/199 (43%), Positives = 125/199 (62%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + V G+DEVGRG LAGPV AA+ L P IP G+NDSKK++ +RE Sbjct: 6 PDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLTALRRE 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + A +SI+ AS + ID+ NI +A+ A+ A+ L P ALIDG +P+ L Sbjct: 66 MLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAMGRALAGLPSRPDFALIDGHMVPKGL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + A++KGD++ LSIAAASI+AKV RDR+M +++P YG+ ++ GY T H Q + Sbjct: 126 GHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTKDHLQALL 185 Query: 190 EKGPSCIHRLTFRPLRNLS 208 GP+ HR +F+P+ N+ Sbjct: 186 NLGPTPHHRRSFKPVHNIL 204 >gi|209886088|ref|YP_002289945.1| ribonuclease HII (RNase HII) [Oligotropha carboxidovorans OM5] gi|209874284|gb|ACI94080.1| ribonuclease HII (RNase HII) [Oligotropha carboxidovorans OM5] Length = 259 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 95/200 (47%), Positives = 134/200 (67%), Gaps = 1/200 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++ RP F E + ++ +WPVAG DEVGRG LAGPVV AA+ILDP+ IP GINDSK+++ Sbjct: 24 TVVTRPSFRRERALMKQGIWPVAGCDEVGRGPLAGPVVAAAVILDPDRIPKGINDSKRLT 83 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + RE L+E+I ++A +S+++A ID+ NI +A+L A+ AV+ L PR +DGR Sbjct: 84 AEAREALFEEICATAFVSVAAAPPWRIDRDNILRASLWALTRAVKGLPQPPRHVFVDGRD 143 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + C+ AVI GD + SI AASI+AKVTRDRLM ++YP YGF+SH+GY +H Sbjct: 144 KIA-VSCECEAVIGGDGLLFSIGAASIVAKVTRDRLMCALARQYPQYGFESHMGYAVPQH 202 Query: 185 QQVIKEKGPSCIHRLTFRPL 204 ++ GP+ HR F P+ Sbjct: 203 LAALERHGPTPHHRRHFAPV 222 >gi|116617876|ref|YP_818247.1| RNase HII [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271923|sp|Q03Y48|RNH2_LEUMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|116096723|gb|ABJ61874.1| RNase HII [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 253 Score = 204 bits (518), Expect = 7e-51, Method: Composition-based stats. Identities = 91/198 (45%), Positives = 123/198 (62%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F++E + +AG+DEVGRG LAGPVV AA+IL + + DSK++S KKR+EL Sbjct: 58 FDIERQYWMQGYDLIAGVDEVGRGPLAGPVVAAAVILPHDFDVLDVIDSKQLSAKKRDEL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+KI AI I + ID+ NI++A A+ AV L IP + LID ++ DL Sbjct: 118 YDKIIEKAISIGVGRVEASIIDEINIYEAARVAMTEAVNQLAPIPEALLID--AMRLDLD 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SI AASIIAKVTRDRLM KYP YGF+ + GY T +H + IK+ Sbjct: 176 LPQEFLIKGDARSNSIGAASIIAKVTRDRLMASYGLKYPGYGFEKNAGYGTKEHLEGIKK 235 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + IHR TF P++++ Sbjct: 236 IGITPIHRKTFAPIKDIL 253 >gi|282889844|ref|ZP_06298383.1| hypothetical protein pah_c004o257 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500418|gb|EFB42698.1| hypothetical protein pah_c004o257 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 232 Score = 204 bits (518), Expect = 8e-51, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E R + VAG+DE GRG LAGPVV AA IL P G+NDSKK++ +KR +L+ Sbjct: 27 TYEEKARRQGYKLVAGVDEAGRGPLAGPVVAAACILPPRFRVPGVNDSKKLTPQKRAQLF 86 Query: 73 EKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I I + + + ID NI +AT+ A+ AV L P++ L+DG +P Sbjct: 87 QEITTHPKVIYGVGIVATEIIDTINILQATIQAMLDAVNQLSSQPQALLVDGLQLPH-PV 145 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GDS+SL IAAASIIAK TRDRLM +++P YGF H GY T +H ++E Sbjct: 146 IPCQKLIHGDSLSLCIAAASIIAKETRDRLMVELDQQWPAYGFAQHKGYGTQQHLDALRE 205 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR TF P++++ Sbjct: 206 HGPCPIHRKTFEPIKSM 222 >gi|229129113|ref|ZP_04258086.1| Ribonuclease [Bacillus cereus BDRD-Cer4] gi|228654350|gb|EEL10215.1| Ribonuclease [Bacillus cereus BDRD-Cer4] Length = 254 Score = 204 bits (518), Expect = 8e-51, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 59 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 118 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 119 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP+YGF+ H+GY T +H + I+ G Sbjct: 177 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYGTKQHLEAIEVHG 236 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 237 VLDEHRKSFAPIKDM 251 >gi|30021925|ref|NP_833556.1| ribonuclease HII [Bacillus cereus ATCC 14579] gi|39932341|sp|Q819W9|RNH2_BACCR RecName: Full=Ribonuclease HII; Short=RNase HII gi|29897481|gb|AAP10757.1| Ribonuclease HII [Bacillus cereus ATCC 14579] Length = 257 Score = 204 bits (518), Expect = 8e-51, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP+YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLDEHRKSFAPIKDM 254 >gi|324992892|gb|EGC24812.1| ribonuclease HII [Streptococcus sanguinis SK405] Length = 254 Score = 204 bits (518), Expect = 9e-51, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + + A + + ++ ID+ NI++AT A+ A+ L P LID + D Sbjct: 118 YQTVMNKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLSFKPDYLLIDAMKLDID-- 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|332522627|ref|ZP_08398879.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176] gi|332313891|gb|EGJ26876.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176] Length = 258 Score = 204 bits (518), Expect = 9e-51, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 118/200 (59%), Gaps = 2/200 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E V + +AGIDEVGRG LAGPVV A +IL N G+NDSKKI K L Sbjct: 59 LRYERDVYGQGYHYIAGIDEVGRGPLAGPVVAACVILPKNCKIKGLNDSKKIPKSKHNIL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 +E+I + A+ I I ++ ID NI++AT A+ A+ + +V + ++ D+ Sbjct: 119 FEQIKNQAVGIGIGIVDNKMIDSVNIYQATKLAMLEAINDLKKVEVIPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SLSIAAASI+AKVTRD+LM + YP Y F + GY T KH +K Sbjct: 179 SIPQMSLIKGDANSLSIAAASIVAKVTRDQLMMSYDQNYPGYDFAQNAGYGTKKHLNGLK 238 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 + G + IHR +F P++++ + Sbjct: 239 KYGVTPIHRKSFEPIKSMLL 258 >gi|163941575|ref|YP_001646459.1| ribonuclease HII [Bacillus weihenstephanensis KBAB4] gi|229564282|sp|A9VT75|RNH2_BACWK RecName: Full=Ribonuclease HII; Short=RNase HII gi|163863772|gb|ABY44831.1| Ribonuclease H [Bacillus weihenstephanensis KBAB4] Length = 257 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P LID +P Sbjct: 122 EIKDHAIAIGVGIISPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPT--SIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|327489685|gb|EGF21476.1| ribonuclease HII [Streptococcus sanguinis SK1058] Length = 254 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + I ++ ID+ NI++AT A+ A+ L + P LID + D Sbjct: 118 YQAVLDKALAVGIGLIDNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLDID-- 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|229541107|ref|ZP_04430167.1| Ribonuclease H [Bacillus coagulans 36D1] gi|229325527|gb|EEN91202.1| Ribonuclease H [Bacillus coagulans 36D1] Length = 255 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 81/194 (41%), Positives = 119/194 (61%), Gaps = 2/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +R +AGIDE GRG LAGPVV AA+IL + G+NDSK++S K+RE + Sbjct: 58 RFEDALRSHGCRLIAGIDEAGRGPLAGPVVAAAVILPEDFYLPGLNDSKQLSEKQREAFF 117 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I ++ + AS + ID+ NI++A A+ A+ +L P LID ++ Sbjct: 118 ARIQEETLVGVGFASAEEIDRMNIYEAAKKAMLAALGHLPAAPDHLLID--AMEIPASYP 175 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +++KGD+ S+SIAAAS++AKVTRDR M+ +KYP YGF H GY T KH + + + G Sbjct: 176 QTSIVKGDAKSISIAAASVVAKVTRDRYMQEMDEKYPGYGFAIHKGYGTKKHLEALMKLG 235 Query: 193 PSCIHRLTFRPLRN 206 P IHR +F P+++ Sbjct: 236 PCPIHRKSFAPIKD 249 >gi|229013020|ref|ZP_04170185.1| Ribonuclease [Bacillus mycoides DSM 2048] gi|229134645|ref|ZP_04263454.1| Ribonuclease [Bacillus cereus BDRD-ST196] gi|229168576|ref|ZP_04296299.1| Ribonuclease [Bacillus cereus AH621] gi|228614982|gb|EEK72084.1| Ribonuclease [Bacillus cereus AH621] gi|228648691|gb|EEL04717.1| Ribonuclease [Bacillus cereus BDRD-ST196] gi|228748274|gb|EEL98134.1| Ribonuclease [Bacillus mycoides DSM 2048] Length = 257 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P LID +P Sbjct: 122 EIKEHAIAIGVGIISPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPT--SIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|229061440|ref|ZP_04198785.1| Ribonuclease [Bacillus cereus AH603] gi|228717863|gb|EEL69511.1| Ribonuclease [Bacillus cereus AH603] Length = 257 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENELREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P LID +P Sbjct: 122 EIKEHAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPT--SIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|324991142|gb|EGC23076.1| ribonuclease HII [Streptococcus sanguinis SK353] Length = 254 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + + +++ ID+ NI++AT A+ A+ L + P LID + D Sbjct: 118 YQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLDVD-- 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|229098306|ref|ZP_04229253.1| Ribonuclease [Bacillus cereus Rock3-29] gi|229117323|ref|ZP_04246701.1| Ribonuclease [Bacillus cereus Rock1-3] gi|228666223|gb|EEL21687.1| Ribonuclease [Bacillus cereus Rock1-3] gi|228685204|gb|EEL39135.1| Ribonuclease [Bacillus cereus Rock3-29] Length = 257 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 91/195 (46%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G++DSKK+S KRE Y+ Sbjct: 62 YENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPDDFYIPGLDDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--SIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPAYGFGQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|332366882|gb|EGJ44623.1| ribonuclease HII [Streptococcus sanguinis SK1059] Length = 254 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYKAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHDEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + I ++ ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YQAVLDKALAVGIGLIDNEIIDRVNIYEATKLAMKEALSKLCLKPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|212639582|ref|YP_002316102.1| ribonuclease HII [Anoxybacillus flavithermus WK1] gi|226736811|sp|B7GGD5|RNH2_ANOFW RecName: Full=Ribonuclease HII; Short=RNase HII gi|212561062|gb|ACJ34117.1| Ribonuclease HII [Anoxybacillus flavithermus WK1] Length = 259 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 123/195 (63%), Gaps = 3/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + +K + +AG+DEVGRG LAGPVV AA+IL + ++DSKK+S KRE+L Sbjct: 60 LQYEQALYDKGIRYIAGVDEVGRGPLAGPVVAAAVILPKDVYLPHVDDSKKLSETKREQL 119 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A I I S + ID+ NI++AT A+ AV L + P LID ++ L Sbjct: 120 FSIIQQMALAIGIGIVSAREIDERNIYEATKKAMMQAVHALAIAPEHLLID--AMHIPLS 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S+SIAA+SIIAKVTRDR+M+ +KYP YGF+ H+GY T +H Q I+ Sbjct: 178 IPQTSIIKGDAHSVSIAASSIIAKVTRDRMMKQLGEKYPQYGFEKHMGYGTKEHLQAIER 237 Query: 191 KGPSCIHRLTFRPLR 205 G HR +F P+R Sbjct: 238 YGVIEEHRRSFAPIR 252 >gi|229104399|ref|ZP_04235068.1| Ribonuclease [Bacillus cereus Rock3-28] gi|228679097|gb|EEL33305.1| Ribonuclease [Bacillus cereus Rock3-28] Length = 257 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L N G++DSKK+S KRE Y+ Sbjct: 62 YENALREKGITYIAGIDEVGRGPLAGPVVTAAVVLPDNFYIPGLDDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--SIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPAYGFGQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|241890105|ref|ZP_04777403.1| ribonuclease HII [Gemella haemolysans ATCC 10379] gi|241863727|gb|EER68111.1| ribonuclease HII [Gemella haemolysans ATCC 10379] Length = 258 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 124/195 (63%), Gaps = 2/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV AA+IL +N G+NDSKK+S KKREELYE Sbjct: 58 YENKCYNNGCKYICGIDEVGRGPLAGPVVAAAVILKKDNYFEGLNDSKKLSEKKREELYE 117 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ +I + I+K+NI+ A A+ AVE L+V P LID E+ P Sbjct: 118 QIRKEAVAYAICEVDNIEIEKYNIYNAARIAMQRAVEKLEVKPDFLLIDAM-PFENYPIP 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 F+++KGD S+SIAAAS+IAKV RD LM+ KKYP Y F+++ GY T KH + +KE G Sbjct: 177 NFSMVKGDEKSVSIAAASVIAKVYRDNLMKEYAKKYPHYDFENNAGYGTKKHLEGLKEHG 236 Query: 193 PSCIHRLTFRPLRNL 207 + IHR F P++++ Sbjct: 237 VTPIHRRDFEPIKSM 251 >gi|222147705|ref|YP_002548662.1| ribonuclease HII [Agrobacterium vitis S4] gi|221734693|gb|ACM35656.1| ribonuclease HII [Agrobacterium vitis S4] Length = 279 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 106/209 (50%), Positives = 139/209 (66%), Gaps = 7/209 (3%) Query: 4 NSIPER-------PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG 56 + +P+ P F LE + K WPVAG DE GRG LAGPVV AA+ILDP+ IP G Sbjct: 66 SDMPDLFTLPLTGPDFSLEESFKAKGCWPVAGTDEAGRGPLAGPVVAAAVILDPDAIPDG 125 Query: 57 INDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 +NDSKK++ KRE L+ +I ++A +SI+S+ +ID+ +I KA+LDA+ A L + P Sbjct: 126 LNDSKKLTAAKREALFIQILATATVSIASSGSDHIDRRDIRKASLDAMRRAAAGLSLAPA 185 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 L DGR +P L C AVIKGD+ SLSIAAASI+AKV RDR+M A +P YGFD+H Sbjct: 186 HLLCDGRDVPPGLICGGTAVIKGDARSLSIAAASIVAKVMRDRMMTRAALVFPQYGFDAH 245 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 GY T HQ+ I + GP +HR++F PLR Sbjct: 246 AGYGTKVHQKAIADHGPCPLHRMSFSPLR 274 >gi|324994471|gb|EGC26384.1| ribonuclease HII [Streptococcus sanguinis SK678] Length = 254 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 117/197 (59%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYKAGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + I ++ ID+ NI++AT A+ A+ L P LID + D Sbjct: 118 YQAVLDKALAVGIGLIDNEIIDRVNIYEATKLAMKEALSVLSHKPDYLLIDAMKLDVD-- 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S SIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSQSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPIKSM 252 >gi|304393450|ref|ZP_07375378.1| ribonuclease HII [Ahrensia sp. R2A130] gi|303294457|gb|EFL88829.1| ribonuclease HII [Ahrensia sp. R2A130] Length = 208 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 98/198 (49%), Positives = 136/198 (68%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P F LE + K + V G+DE GRG LAGPV+ AA+ILDP+NIP G+NDSK ++ K+R Sbjct: 5 QPDFTLETLALSKGIKNVCGVDEAGRGPLAGPVIAAAVILDPDNIPSGLNDSKALTEKRR 64 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EL++ I +++ ++ ++ + ID NI A+L A+ +V L V ALIDG ++P + Sbjct: 65 SELFDAILATSQVAFATVAAGRIDAMNIRAASLYAMEQSVRALPVCANHALIDGNALPPN 124 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +PC A A++KGD+ SLSIAAASIIAKV RDR+M A +P YGF H GYPTA H+ + Sbjct: 125 MPCSAEAIVKGDARSLSIAAASIIAKVMRDRIMVRADTLWPQYGFSGHKGYPTAAHRDAL 184 Query: 189 KEKGPSCIHRLTFRPLRN 206 GP IHR++FRP+RN Sbjct: 185 ARLGPCQIHRMSFRPVRN 202 >gi|332361192|gb|EGJ38996.1| ribonuclease HII [Streptococcus sanguinis SK1056] Length = 254 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + I + + ID+ NI++AT A+ A+ L + P LID + D Sbjct: 118 YQAVLDKALAVGIGLMNSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLDID-- 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|296504332|ref|YP_003666032.1| ribonuclease HII [Bacillus thuringiensis BMB171] gi|296325384|gb|ADH08312.1| ribonuclease HII [Bacillus thuringiensis BMB171] Length = 257 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQIIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLDEHRNSFAPIKDM 254 >gi|23098995|ref|NP_692461.1| ribonuclease H [Oceanobacillus iheyensis HTE831] gi|39932410|sp|Q8EQZ4|RNH2_OCEIH RecName: Full=Ribonuclease HII; Short=RNase HII gi|22777223|dbj|BAC13496.1| ribonuclease H [Oceanobacillus iheyensis HTE831] Length = 261 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 89/195 (45%), Positives = 115/195 (58%), Gaps = 2/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +AG+DEVGRG LAGPVV AA+IL + GINDSKK+S +R E Sbjct: 60 TYEKEAYRNGNHYIAGVDEVGRGPLAGPVVAAAVILPKDFQLLGINDSKKLSEVQRNEFS 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I AI IS + IDK NI++A+ A+ A+ LQ P ALID E L C Sbjct: 120 HYIKQHAIAYQISFIDNTIIDKINIYEASKQAMKEAISGLQPYPDHALIDAV-PLEGLNC 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD+ S+ IAAAS++AKV RD M+ H+KYP YGF+S++GY T +H Q I+ Sbjct: 179 TYEAIIKGDAESVHIAAASVLAKVARDDWMKELHEKYPLYGFNSNMGYGTKEHLQAIETY 238 Query: 192 GPSCIHRLTFRPLRN 206 G + HR +F PL Sbjct: 239 GVTPYHRYSFAPLHK 253 >gi|95930749|ref|ZP_01313482.1| Ribonuclease H [Desulfuromonas acetoxidans DSM 684] gi|95133229|gb|EAT14895.1| Ribonuclease H [Desulfuromonas acetoxidans DSM 684] Length = 210 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 92/206 (44%), Positives = 131/206 (63%), Gaps = 4/206 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F + + + P + E +R + VAGIDE GRG LAGPVV AA+IL + G+NDS Sbjct: 5 LFDDDLID-PTY-FERQLRRQGTTLVAGIDEAGRGPLAGPVVAAAVILPEHFDLPGLNDS 62 Query: 61 KKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK++ KKRE+L+ I A + + A + ID+ NI +AT+ ++ AV L+V P+ L Sbjct: 63 KKLTEKKREQLFGPIRQQALAVGVGFAHAEEIDEINILQATVQSMCRAVARLKVTPQHLL 122 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG + + KGDS SLS+AAAS+IAKV RDR+M++ + YPDYGF+ H GY Sbjct: 123 IDGITPLPL-SIDQQTIKKGDSRSLSVAAASVIAKVVRDRMMKVYARHYPDYGFEGHKGY 181 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLR 205 +A+H+Q+I E GP +HR TF +R Sbjct: 182 GSARHRQLIAEHGPCPLHRKTFGGVR 207 >gi|332360875|gb|EGJ38681.1| ribonuclease HII [Streptococcus sanguinis SK49] Length = 254 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +++ Sbjct: 58 LRYEKELYKTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQDI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + + ++ ID+ NI++AT A+ A+ L + P LID + D Sbjct: 118 YQAVMDKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLCLKPDYLLIDAMKLDID-- 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|323127302|gb|ADX24599.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 256 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 117/198 (59%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 59 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ + + + ++ D+ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H ++ Sbjct: 179 AIPQQSIIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNSGYGTKEHLDGLR 238 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 239 THGITPIHRKSFEPIKSM 256 >gi|251782421|ref|YP_002996723.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391050|dbj|BAH81509.1| ribonuclease HII [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 256 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 116/198 (58%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 59 LSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ + + + ++ D+ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H ++ Sbjct: 179 AIPQQSIIKGDANSLSIAAASIVAKVTRDQMMANYERIFPGYGFAKNSGYGTKEHLDGLR 238 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 239 THGITPIHRKSFEPIKSM 256 >gi|327462197|gb|EGF08524.1| ribonuclease HII [Streptococcus sanguinis SK1] Length = 254 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +++ Sbjct: 58 LRYEKELYQTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQDI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + + ++ ID+ NI++AT A+ A+ L + P LID + D Sbjct: 118 YQAVMDKALAVGVGLIDNEIIDQVNIYEATKLAMKEALSKLCLKPDYLLIDAMKLDID-- 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|182677913|ref|YP_001832059.1| ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039] gi|182633796|gb|ACB94570.1| Ribonuclease H [Beijerinckia indica subsp. indica ATCC 9039] Length = 210 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 100/200 (50%), Positives = 131/200 (65%), Gaps = 1/200 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 S P +P F E +R++ +AGIDEVGRG LAGPV AA+ILDP N+P G+NDSK +S Sbjct: 7 SNPSQPDFTFEKRLRKRGFTLIAGIDEVGRGPLAGPVTAAAVILDPKNLPQGLNDSKMLS 66 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++RE LY+ I + A ++I+ ID+ NI +ATL A+ + L + P L+DG Sbjct: 67 AEQREALYDLILARALAVAIACVGPGEIDRINIRQATLTAMRRTLPALALAPHYVLVDGN 126 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +PEDL C +IKGD+ SLSIAAASI+AKV RDRLM+ YP YGF++HVGY T Sbjct: 127 DLPEDLGCPGETIIKGDARSLSIAAASIVAKVARDRLMQRLSALYPAYGFENHVGYATQA 186 Query: 184 HQQVIKEKGPSCIHRLTFRP 203 H I+ GP IHRL+F P Sbjct: 187 HLTAIEAYGPCPIHRLSFSP 206 >gi|311068127|ref|YP_003973050.1| ribonuclease HII [Bacillus atrophaeus 1942] gi|310868644|gb|ADP32119.1| ribonuclease HII [Bacillus atrophaeus 1942] Length = 255 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 87/192 (45%), Positives = 118/192 (61%), Gaps = 3/192 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + R K +AGIDEVGRG LAGPVV +A+IL G+ DSKK+S KKREE YE+ Sbjct: 63 ERLARNKGFCIIAGIDEVGRGPLAGPVVASAVILPAECEILGLTDSKKLSEKKREEYYER 122 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A + I ID+ NI++A+ A+ AV L P L+D ++P D Sbjct: 123 IMNEALGVGIGIIEASVIDEMNIYEASKLAMVKAVRELSEAPDYLLVDAMTLPLD--IPQ 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SIAA + +AKVTRDR+M K YP YGF+ H GY T +H + + GP Sbjct: 181 SSIIKGDAKSVSIAAGACVAKVTRDRMMSEYAKTYPMYGFEKHKGYGTKEHLEALAAYGP 240 Query: 194 SCIHRLTFRPLR 205 + IHR TF P++ Sbjct: 241 TDIHRRTFAPVQ 252 >gi|308173568|ref|YP_003920273.1| ribonuclease HII [Bacillus amyloliquefaciens DSM 7] gi|307606432|emb|CBI42803.1| ribonuclease HII [Bacillus amyloliquefaciens DSM 7] gi|328553499|gb|AEB23991.1| ribonuclease HII [Bacillus amyloliquefaciens TA208] gi|328911709|gb|AEB63305.1| ribonuclease HII [Bacillus amyloliquefaciens LL3] Length = 255 Score = 201 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 114/195 (58%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + +K +AG+DE GRG LAGPVV A+IL G+ DSKK+S KK EE Y Sbjct: 61 AYERLSYKKGFRLIAGVDEAGRGPLAGPVVAGAVILPAQCEILGLTDSKKLSEKKLEEYY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +IT A I + ID+ NI++A A+ AV L P L D ++P D Sbjct: 121 TRITEEAAAIGVGIVHADVIDRINIYEAARLAMVKAVNALAETPDYLLADAMTLPLD--I 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +VIKGD+ S+SIAA + IAKVTRDRLM K YP YGF+ + GY T +H + ++ Sbjct: 179 PQSSVIKGDAKSVSIAAGACIAKVTRDRLMAEYAKTYPMYGFEKNKGYGTKEHLEALQAY 238 Query: 192 GPSCIHRLTFRPLRN 206 GP+ IHR TF P+++ Sbjct: 239 GPTNIHRKTFAPVQS 253 >gi|89070017|ref|ZP_01157348.1| ribonuclease HII [Oceanicola granulosus HTCC2516] gi|89044354|gb|EAR50492.1| ribonuclease HII [Oceanicola granulosus HTCC2516] Length = 211 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 80/198 (40%), Positives = 121/198 (61%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E ++ +AG+DEVGRG LAGPV AA++LDP IP G+ DSK + +RE Sbjct: 6 DLSFETRALQRGFARIAGVDEVGRGPLAGPVTAAAVVLDPARIPEGLADSKALPRARREA 65 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L ++ A ++++ S ID HNI +A+ A+ A+ L+ ALIDG +P DL Sbjct: 66 LDAELREVACVAVAHCSVAEIDTHNILRASHIAMCRALAALEQTCDHALIDGNMLPRDLA 125 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C A++KGD+ LSIAAASI+AKV RDR+M +++P YG+++++GY T H+ ++ Sbjct: 126 CSGEALVKGDARCLSIAAASIVAKVARDRIMVDLAQQHPGYGWETNMGYGTKGHRSALQN 185 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + HR +F P+ N+ Sbjct: 186 LGVTPHHRRSFAPIYNIL 203 >gi|322411764|gb|EFY02672.1| ribonuclease HII [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 256 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 117/198 (59%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 59 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHFKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ + + + ++ D+ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H ++ Sbjct: 179 AIPQQSIIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLDGLR 238 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 239 THGITPIHRKSFEPIKSM 256 >gi|325694493|gb|EGD36402.1| ribonuclease HII [Streptococcus sanguinis SK150] Length = 254 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHDEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A + + + IDK NI++AT A+ A+ L++ P LID + D+ Sbjct: 118 YQEVMDKALAVGVGLMDSKIIDKVNIYQATKLAMKDALSRLKIEPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEFPGYDFSQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPVKSM 252 >gi|332360459|gb|EGJ38270.1| ribonuclease HII [Streptococcus sanguinis SK355] Length = 254 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYLAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A + I + ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YKEVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAAS++AKVTRD+LM K+YP Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASVVAKVTRDKLMADYDKEYPGYDFAKNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPVKSM 252 >gi|313889379|ref|ZP_07823027.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026] gi|313122211|gb|EFR45302.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026] Length = 257 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 117/199 (58%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + ++ +AGIDEVGRG LAGPVV A ++L N G+NDSKKI K L Sbjct: 59 FRYERDIYQQGYHCIAGIDEVGRGPLAGPVVAACVVLPKNCKIKGLNDSKKIPKSKHITL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 +E+I A+ I I ++ ID NI++AT A+ A+ N +V + ++ D+ Sbjct: 119 FEQIKKQAMGIGIGIVDNEMIDTINIYQATKLAMLEAINNLKKVEVIPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD+ SLSIAAASIIAKVTRD+LM + YP Y F + GY T KH Q +K Sbjct: 179 SIPQMPLIKGDANSLSIAAASIIAKVTRDQLMMSYDQTYPGYDFAQNAGYGTKKHLQGLK 238 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + IHR +F P++++ Sbjct: 239 NYGVTPIHRKSFEPIKSML 257 >gi|329117652|ref|ZP_08246369.1| ribonuclease HII [Streptococcus parauberis NCFD 2020] gi|326908057|gb|EGE54971.1| ribonuclease HII [Streptococcus parauberis NCFD 2020] Length = 257 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 80/199 (40%), Positives = 114/199 (57%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV A +IL N G+NDSKKI K E + Sbjct: 59 LRYEKSLYAQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKITGLNDSKKIPKSKHEMI 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y + AI + I +++ ID+ NI++AT A+ A+ N + ++ + Sbjct: 119 YNLVIEKAIAVGIGLMTNEVIDEVNIYQATKLAMQAAINNLEGDNLTPDFLLIDAMKLEN 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SLSIAAASI+AKVTRDRLM K YP Y F + GY T H + ++ Sbjct: 179 SIPQESIIKGDANSLSIAAASIVAKVTRDRLMVDYDKAYPGYDFAKNAGYGTKNHLEGLR 238 Query: 190 EKGPSCIHRLTFRPLRNLS 208 + G + IHR TF P++++ Sbjct: 239 KLGVTEIHRRTFEPVKSML 257 >gi|325689693|gb|EGD31697.1| ribonuclease HII [Streptococcus sanguinis SK115] Length = 254 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + I ++ ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YQAVMDKALAVGIGLMDNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPIKSM 252 >gi|227432240|ref|ZP_03914236.1| ribonuclease HII [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352013|gb|EEJ42243.1| ribonuclease HII [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 253 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 92/198 (46%), Positives = 123/198 (62%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F++E + +AG+DEVGRG LAGPVV AAIIL + + DSK++S KKR+EL Sbjct: 58 FDIERQYWMQGYDLIAGVDEVGRGPLAGPVVAAAIILPHDFDVLDVIDSKQLSAKKRDEL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+KI AI I + ID+ NI++A A+ AV L IP + LID ++ DL Sbjct: 118 YDKIIEKAISIGVGRVEASIIDEINIYEAARVAMTEAVNQLAPIPEALLID--AMRLDLD 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SI AASIIAKVTRDRLM KYP YGF+ + GY T +H + IK+ Sbjct: 176 LPQEFLIKGDARSNSIGAASIIAKVTRDRLMASYGLKYPGYGFEKNAGYGTKEHLEGIKK 235 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + IHR TF P++++ Sbjct: 236 IGITPIHRKTFAPIKDIL 253 >gi|296133539|ref|YP_003640786.1| Ribonuclease H [Thermincola sp. JR] gi|296032117|gb|ADG82885.1| Ribonuclease H [Thermincola potens JR] Length = 259 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 114/196 (58%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + VAGIDE GRG LAGPVV AA+IL ++ G+NDSKK+S +KR EL Sbjct: 62 LKYERELWAAGYTLVAGIDEAGRGPLAGPVVAAAVILKQGDLIEGLNDSKKLSPEKRSEL 121 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I A+ I S ID+ NI++A L A+ AV + + P L+D + + Sbjct: 122 EEVIKERAVAYGIGIVSETEIDEMNIYQAALKAMRIAVAKISLKPEYLLVDAVT-IPGVS 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A++ GD++S SIAAASI+AK TRDR+M YP YGF H GY TA H + +K+ Sbjct: 181 IPQKAIVHGDALSCSIAAASILAKETRDRIMTELDALYPHYGFAQHKGYATAFHLEALKK 240 Query: 191 KGPSCIHRLTFRPLRN 206 GP +HR TF +R Sbjct: 241 YGPCPVHRKTFGQVRQ 256 >gi|259046715|ref|ZP_05737116.1| ribonuclease HII [Granulicatella adiacens ATCC 49175] gi|259036611|gb|EEW37866.1| ribonuclease HII [Granulicatella adiacens ATCC 49175] Length = 256 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 85/194 (43%), Positives = 120/194 (61%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++K +AGIDEVGRG LAGPVV AA+IL G++DSKK+S K+REE++ Sbjct: 61 SFERAAQQKGYRMIAGIDEVGRGPLAGPVVAAAVILPEGMEDIGLDDSKKLSAKRREEIF 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A+ I I IDK NI++A+ A+ A+E L P LID ++ D Sbjct: 121 EMIKEQAVAIGIGIVDAFTIDKINIYEASKVAMKRAIELLPEQPDYLLID--AMRLDTGI 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AK RD++M+ + YP YGF + GY T H + +++ Sbjct: 179 PQEGIIKGDAKSISIAAASIVAKEVRDQMMKDYEQLYPGYGFAQNAGYGTKAHIEGLEKL 238 Query: 192 GPSCIHRLTFRPLR 205 GP+ IHR+TF P++ Sbjct: 239 GPTPIHRMTFAPVK 252 >gi|330719081|ref|ZP_08313681.1| ribonuclease HII [Leuconostoc fallax KCTC 3537] Length = 254 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F++E K + VAGIDEVGRG LAGPVV AA+IL + + DSK++S KR+ L Sbjct: 59 FDIEKQYWAKGLVNVAGIDEVGRGPLAGPVVSAAVILPHDFNQVDVIDSKQLSADKRDRL 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I + A I I + ID NI++A A+ AV+ L + LID ++ DL Sbjct: 119 YDVIMAEALAIGIGQVDAETIDAINIYQAARLAMTQAVQQLSIPVDGLLID--AMQLDLD 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S SI AASIIAKVTRDRLM K+YP YGF + GY T +H I+E Sbjct: 177 LPQESLIKGDARSNSIGAASIIAKVTRDRLMAEYGKRYPAYGFQHNAGYGTKEHLVAIEE 236 Query: 191 KGPSCIHRLTFRPLRNL 207 G + +HR TF P++N+ Sbjct: 237 YGITPLHRKTFAPIKNM 253 >gi|299134668|ref|ZP_07027860.1| Ribonuclease H [Afipia sp. 1NLS2] gi|298590478|gb|EFI50681.1| Ribonuclease H [Afipia sp. 1NLS2] Length = 254 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 96/200 (48%), Positives = 135/200 (67%), Gaps = 1/200 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 + RP F E + ++ +WPVAG DEVGRG LAGPVV AA+ILDP+ IP GI+DSK+++ Sbjct: 20 TAATRPSFRRERALLKQGIWPVAGCDEVGRGPLAGPVVAAAVILDPDRIPKGIDDSKRLT 79 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + RE L+E+I ++A++S+++A ID+ NI +A+L A+ AV+ L PR +DGR Sbjct: 80 VEAREALFEEICATAMVSVAAAPPWRIDRDNILRASLWALARAVQGLPQAPRHVFVDGRD 139 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 D+PC VI GD + LSI AASI+AKVTRDRLM + +P+YGFDSH+GY +H Sbjct: 140 -RIDVPCGCEPVIGGDGLLLSIGAASIVAKVTRDRLMCRLARVHPEYGFDSHMGYGVPRH 198 Query: 185 QQVIKEKGPSCIHRLTFRPL 204 ++ GP+ HR F P+ Sbjct: 199 LAALELHGPTPHHRRYFAPV 218 >gi|19746108|ref|NP_607244.1| ribonuclease HII [Streptococcus pyogenes MGAS8232] gi|94994428|ref|YP_602526.1| ribonuclease HII [Streptococcus pyogenes MGAS10750] gi|32171675|sp|Q8P109|RNH2_STRP8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226661|sp|Q1J6K1|RNH2_STRPF RecName: Full=Ribonuclease HII; Short=RNase HII gi|19748282|gb|AAL97743.1| putative ribonuclease HII [Streptococcus pyogenes MGAS8232] gi|94547936|gb|ABF37982.1| Ribonuclease HII [Streptococcus pyogenes MGAS10750] Length = 263 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 79/198 (39%), Positives = 117/198 (59%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 59 LSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ + + + ++ D+ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q +K Sbjct: 179 AISQQSIIKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQGLK 238 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 239 AYGITPIHRKSFEPVKSM 256 >gi|327474218|gb|EGF19625.1| ribonuclease HII [Streptococcus sanguinis SK408] Length = 254 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGYQRIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + I + ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YQAVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPVKSM 252 >gi|293570274|ref|ZP_06681343.1| ribonuclease HII [Enterococcus faecium E980] gi|291609681|gb|EFF38942.1| ribonuclease HII [Enterococcus faecium E980] Length = 255 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 93/196 (47%), Positives = 124/196 (63%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + +AGIDEVGRG LAGPVV AA+IL N I G+NDSK++S KKRE L Sbjct: 59 FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I A I I Q ID+ NI++A+ A+ AVENL + P LID ++ DLP Sbjct: 119 SQQIQEKALAIGIGIIDQQAIDEVNIYEASKLAMIQAVENLSIAPSYLLID--AMTLDLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236 Query: 191 KGPSCIHRLTFRPLRN 206 +G + IHR +F P++ Sbjct: 237 QGITPIHRKSFAPVKK 252 >gi|257898823|ref|ZP_05678476.1| ribonuclease HII [Enterococcus faecium Com15] gi|257836735|gb|EEV61809.1| ribonuclease HII [Enterococcus faecium Com15] Length = 255 Score = 200 bits (510), Expect = 7e-50, Method: Composition-based stats. Identities = 93/196 (47%), Positives = 124/196 (63%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + +AGIDEVGRG LAGPVV AA+IL N I G+NDSK++S KKRE L Sbjct: 59 FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I A I I Q ID+ NI++A+ A+ AVENL + P LID ++ DLP Sbjct: 119 SQQIQEKALAIGIGIIDQQAIDEVNIYEASKLAMIQAVENLSIAPSYLLID--AMTLDLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236 Query: 191 KGPSCIHRLTFRPLRN 206 +G + IHR +F P++ Sbjct: 237 QGITPIHRKSFAPVKK 252 >gi|288905300|ref|YP_003430522.1| ribonuclease HII [Streptococcus gallolyticus UCN34] gi|306831379|ref|ZP_07464538.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978285|ref|YP_004288001.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732026|emb|CBI13591.1| ribonuclease HII [Streptococcus gallolyticus UCN34] gi|304426439|gb|EFM29552.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178213|emb|CBZ48257.1| rnhB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 259 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 79/199 (39%), Positives = 117/199 (58%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL N +NDSKKI EE+ Sbjct: 58 LRYEKELYQQGYQAIAGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPKNHHEEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y++I + A I I + ID+ NI++AT + A+ V+ + + ++ + Sbjct: 118 YQEILARALGIGIGIVDNNVIDQINIYEATKVGMLQAINQLKGVVTKPDYLLIDAMHLET 177 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SLSIAAASI+AKVTRDR+M YP Y F+ +VGY T +H + +K Sbjct: 178 SIPQQSLIKGDANSLSIAAASIVAKVTRDRMMADYANDYPGYAFEKNVGYGTKEHLEGLK 237 Query: 190 EKGPSCIHRLTFRPLRNLS 208 + G + IHR TF P++++ Sbjct: 238 KYGITPIHRKTFEPIKSML 256 >gi|50914225|ref|YP_060197.1| ribonuclease HII [Streptococcus pyogenes MGAS10394] gi|68053078|sp|Q5XC49|RNH2_STRP6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|50903299|gb|AAT87014.1| Ribonuclease HII [Streptococcus pyogenes MGAS10394] Length = 263 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 78/198 (39%), Positives = 117/198 (59%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 59 LSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ + + + ++ D+ Sbjct: 119 YQAVKEQALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q +K Sbjct: 179 AISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQGLK 238 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 239 AYGITPIHRKSFEPVKSM 256 >gi|326693008|ref|ZP_08230013.1| ribonuclease HII [Leuconostoc argentinum KCTC 3773] Length = 258 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 116/196 (59%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F EA + + VAG+DEVGRG LAGPVV AA+IL + + DSK++S K RE+L Sbjct: 59 FTFEAQQWAQGLSHVAGVDEVGRGPLAGPVVAAAVILPHDFAELDVIDSKQLSEKMREQL 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I + A I I ID NI++A A+ AV L P LID ++ D Sbjct: 119 FDRIIAQALSIGIGVVDATVIDDINIYEAARLAMTQAVAELAPEPDYLLIDAMTLQTD-- 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S SIAAASIIAKVTRDR+M ++YP YGF H GY T H + E Sbjct: 177 IPQLSLIKGDARSNSIAAASIIAKVTRDRMMADYDRQYPGYGFAQHAGYGTKAHLAALAE 236 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR +F P+++ Sbjct: 237 LGVTPIHRRSFAPVKS 252 >gi|227551191|ref|ZP_03981240.1| ribonuclease H [Enterococcus faecium TX1330] gi|257887692|ref|ZP_05667345.1| ribonuclease HII [Enterococcus faecium 1,141,733] gi|257896186|ref|ZP_05675839.1| ribonuclease HII [Enterococcus faecium Com12] gi|293377187|ref|ZP_06623395.1| ribonuclease HII [Enterococcus faecium PC4.1] gi|227179659|gb|EEI60631.1| ribonuclease H [Enterococcus faecium TX1330] gi|257823746|gb|EEV50678.1| ribonuclease HII [Enterococcus faecium 1,141,733] gi|257832751|gb|EEV59172.1| ribonuclease HII [Enterococcus faecium Com12] gi|292644207|gb|EFF62309.1| ribonuclease HII [Enterococcus faecium PC4.1] Length = 255 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 123/196 (62%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + +AGIDEVGRG LAGPVV AA+IL N I G+NDSK++S KKRE L Sbjct: 59 FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I A I I Q ID+ NI++A+ A+ AVENL + P LID ++ DL Sbjct: 119 SQQIQEKALAIGIGIIDQQTIDEVNIYEASKLAMIQAVENLSIAPSYLLID--AMTLDLS 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236 Query: 191 KGPSCIHRLTFRPLRN 206 +G + IHR +F P++ Sbjct: 237 QGITPIHRKSFAPVKK 252 >gi|71910696|ref|YP_282246.1| ribonuclease HII [Streptococcus pyogenes MGAS5005] gi|71853478|gb|AAZ51501.1| ribonuclease HII [Streptococcus pyogenes MGAS5005] Length = 263 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 78/198 (39%), Positives = 117/198 (59%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 59 LSYEKALYKKGYKAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ + + + ++ D+ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q +K Sbjct: 179 AISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQGLK 238 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 239 AYGITPIHRKSFEPVKSM 256 >gi|310658877|ref|YP_003936598.1| ribonuclease hii (rnase hii) [Clostridium sticklandii DSM 519] gi|308825655|emb|CBH21693.1| Ribonuclease HII (RNase HII) [Clostridium sticklandii] Length = 256 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F +E + + + G+DE GRG LAGPVV A +ILD N + GI+DSKK+S K R+ + Sbjct: 61 FIIEETLFAEGYKKIGGVDEAGRGPLAGPVVSACVILDKNPMIDGIDDSKKVSEKNRDRI 120 Query: 72 YEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ I +S I I + ID++NI AT A+ ++ P ++DG D+ Sbjct: 121 FDTIVNSDIIYGIGISDSNEIDEYNILNATFLAMKRSIAMASQRPDFIIVDGNQQITDIN 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +++GDS S+SIA ASI+AKVTRD++M+ + YP YGFD H GY T +H + I + Sbjct: 181 HPQRCIVQGDSKSISIACASILAKVTRDKIMKQYAEIYPQYGFDKHKGYGTKEHIEAINK 240 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHRL+F L+N+ Sbjct: 241 YGITPIHRLSF--LKNI 255 >gi|325292105|ref|YP_004277969.1| Ribonuclease HII [Agrobacterium sp. H13-3] gi|325059958|gb|ADY63649.1| Ribonuclease HII [Agrobacterium sp. H13-3] Length = 224 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 104/205 (50%), Positives = 138/205 (67%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 + P F E R+K +WPVAG DE GRG LAGPVV AA+ILDP+NIP G++DSK Sbjct: 19 LFDLADTGPDFSFELEARKKGLWPVAGTDEAGRGPLAGPVVAAAVILDPDNIPGGLDDSK 78 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 K++ KRE L+ +I ++I+S++S+ ID NI +A+LDA+ AV L++ P L D Sbjct: 79 KLTKLKRESLFLQIMETSIVSVASSGPGLIDTMNILRASLDAMRRAVLGLEISPALVLAD 138 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 GR P + C++ AVIKGDS SLSIAAASIIAKVTRDR+M A + YGF+ H GY T Sbjct: 139 GRDKPPGITCESKAVIKGDSRSLSIAAASIIAKVTRDRMMERAGVVHSSYGFEGHAGYGT 198 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206 H + I+ GP +HR++FRPL+ Sbjct: 199 PAHLRAIESHGPCPLHRMSFRPLKQ 223 >gi|187735061|ref|YP_001877173.1| Ribonuclease H [Akkermansia muciniphila ATCC BAA-835] gi|187425113|gb|ACD04392.1| Ribonuclease H [Akkermansia muciniphila ATCC BAA-835] Length = 214 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 86/205 (41%), Positives = 116/205 (56%), Gaps = 4/205 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHK 66 P E R VAG+DE GRG LAGPVV A+IL G+NDSK+++ Sbjct: 5 PHPDMSFEMEARASGFLCVAGVDEAGRGPLAGPVVAGAVILPVLAEELTGLNDSKQLTAA 64 Query: 67 KREELYEKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KRE L+ + A+ S+ AS + ID+ NI +AT A+ AVE L + L+DG Sbjct: 65 KRERLFLALLECEQAVCSVGVASVEEIDRFNILRATHLAMARAVEGLALRADFCLVDGL- 123 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + LP A++KGD SLSIAAAS++AKVTRDR+M A YP YGF H GY T H Sbjct: 124 PVKGLPVPHRAIVKGDGRSLSIAAASVLAKVTRDRMMMEADASYPQYGFAKHKGYGTKAH 183 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209 + ++ GP +HR +F P+ + + Sbjct: 184 MEALRRHGPCPLHRRSFAPVSQMEL 208 >gi|296330821|ref|ZP_06873296.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674339|ref|YP_003866011.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii str. W23] gi|296151826|gb|EFG92700.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412583|gb|ADM37702.1| ribonuclease HII [Bacillus subtilis subsp. spizizenii str. W23] Length = 255 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + R K +AG+DEVGRG LAGPVV +A+IL G+ DSKK+S KKR+E Y Sbjct: 61 SYERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKRDEYY 120 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A + I ID+ NI++A+ A+ A+ +L P L+D ++P Sbjct: 121 ELIMKEALAVGIGIVEASVIDEVNIYEASKMAMVKAIHDLSDTPDYLLVDAMTLPVG--I 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAA + IAKVTRDR+M + YP YGF+ + GY T +H + + Sbjct: 179 DQSSIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPIYGFEKNKGYGTKEHLEALAAH 238 Query: 192 GPSCIHRLTFRPLRN 206 GP+ +HR TF P+++ Sbjct: 239 GPTELHRKTFAPVQS 253 >gi|94988631|ref|YP_596732.1| ribonuclease HII [Streptococcus pyogenes MGAS9429] gi|94992454|ref|YP_600553.1| ribonuclease HII [Streptococcus pyogenes MGAS2096] gi|166226658|sp|Q1JBP9|RNH2_STRPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226659|sp|Q1JLN1|RNH2_STRPC RecName: Full=Ribonuclease HII; Short=RNase HII gi|94542139|gb|ABF32188.1| ribonuclease HII [Streptococcus pyogenes MGAS9429] gi|94545962|gb|ABF36009.1| Ribonuclease HII [Streptococcus pyogenes MGAS2096] Length = 263 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 79/198 (39%), Positives = 118/198 (59%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 59 LSYEKALYKKGYQAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKSKHETI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ L+ + + ++ D+ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLESQLTQPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q +K Sbjct: 179 AISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQGLK 238 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 239 AYGITPIHRKSFEPVKSM 256 >gi|328946298|gb|EGG40442.1| ribonuclease HII [Streptococcus sanguinis SK1087] Length = 254 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +++ Sbjct: 58 LRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKINGLNDSKKIPKKKHQDI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + I + + ID+ NI++AT A+ A+ L++ LID + D Sbjct: 118 YQAVMDKALAVGIGLMNSEIIDQVNIYEATKLAMKEALSKLRLKSDYLLIDAMKLDVD-- 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPVKSM 252 >gi|327470026|gb|EGF15490.1| ribonuclease HII [Streptococcus sanguinis SK330] Length = 254 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LQHEKELYKAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + I + IDK NI++AT A+ A+ L++ P LID + D+ Sbjct: 118 YQAVLDKALAVGIGLMDNDIIDKVNIYEATKLAMKEALSKLRLKPDYLLIDAIKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKEFPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 HGVTPIHRKTFEPIKSM 252 >gi|295399793|ref|ZP_06809774.1| Ribonuclease H [Geobacillus thermoglucosidasius C56-YS93] gi|312111695|ref|YP_003990011.1| ribonuclease H [Geobacillus sp. Y4.1MC1] gi|294978196|gb|EFG53793.1| Ribonuclease H [Geobacillus thermoglucosidasius C56-YS93] gi|311216796|gb|ADP75400.1| Ribonuclease H [Geobacillus sp. Y4.1MC1] Length = 268 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 123/196 (62%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + + +AGIDE GRG LAGPVV AA+IL + G+NDSKK+S KRE L+ Sbjct: 61 RYERQLFAQGIKYIAGIDEAGRGPLAGPVVAAAVILPKDAYIPGLNDSKKLSEAKRETLF 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I S A+ I I + ID+ NI++AT A+ AVE L P L+D ++ +P Sbjct: 121 HMIQSCAVSIGIGVVTAAEIDEINIYEATKKAMIKAVEQLSPKPDYLLVD--AMTLPIPM 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD+ S+SIAA+S+IAKVTRD M+ K+YP YGF+ ++GY TA+H + I+ Sbjct: 179 PQQSIVKGDANSVSIAASSVIAKVTRDHFMKQLAKRYPQYGFEKNMGYGTAQHLEAIRTY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G HRL+F P++ + Sbjct: 239 GTIDEHRLSFSPIKEM 254 >gi|262282236|ref|ZP_06060004.1| ribonuclease HII [Streptococcus sp. 2_1_36FAA] gi|262261527|gb|EEY80225.1| ribonuclease HII [Streptococcus sp. 2_1_36FAA] Length = 254 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 86/198 (43%), Positives = 118/198 (59%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK E+ Sbjct: 58 LRYEKELYQAGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHNEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + + A + I + ID+ NI++AT A+ A+ L + P LID + D Sbjct: 118 YQAVMNKALTVGIGLMDNDIIDQVNIYEATKLAMKEALSKLFLKPDYLLIDAMKLDVD-- 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRDRLM K++P Y F + GY T H + ++ Sbjct: 176 IPQDSIIKGDANSLSIAAASIVAKVTRDRLMADYDKEFPGYAFAQNAGYGTKSHLEGLEH 235 Query: 191 KGPSCIHRLTFRPLRNLS 208 G S IHR TF P++++ Sbjct: 236 YGVSPIHRKTFEPVKSML 253 >gi|16078669|ref|NP_389488.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168] gi|221309481|ref|ZP_03591328.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168] gi|221313806|ref|ZP_03595611.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318730|ref|ZP_03600024.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. JH642] gi|221323001|ref|ZP_03604295.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. SMY] gi|6685901|sp|O31744|RNH2_BACSU RecName: Full=Ribonuclease HII; Short=RNase HII gi|2633978|emb|CAB13479.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. 168] Length = 255 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + R K +AG+DEVGRG LAGPVV +A+IL G+ DSKK+S KKREE Y Sbjct: 61 SYERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYY 120 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A + I ID+ NI++A+ A+ A+++L P L+D ++P D Sbjct: 121 ELIMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSDTPDYLLVDAMTLPLDTA- 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAA + IAKVTRDR+M + YP YGF+ + GY T +H + + Sbjct: 180 -QASIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAY 238 Query: 192 GPSCIHRLTFRPLRN 206 GP+ +HR TF P+++ Sbjct: 239 GPTELHRKTFAPVQS 253 >gi|291484157|dbj|BAI85232.1| ribonuclease HII [Bacillus subtilis subsp. natto BEST195] Length = 255 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + R K +AG+DEVGRG LAGPVV +A+IL G+ DSKK+S KKREE Y Sbjct: 61 SYERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYY 120 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A + I ID+ NI++A+ A+ A+++L P L+D ++P D Sbjct: 121 ELIMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSGTPDYLLVDAMTLPLDTA- 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAA + IAKVTRDR+M + YP YGF+ + GY T +H + + Sbjct: 180 -QASIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAY 238 Query: 192 GPSCIHRLTFRPLRN 206 GP+ +HR TF P+++ Sbjct: 239 GPTELHRKTFAPVQS 253 >gi|222085047|ref|YP_002543576.1| ribonuclease HII protein [Agrobacterium radiobacter K84] gi|221722495|gb|ACM25651.1| ribonuclease HII protein [Agrobacterium radiobacter K84] Length = 218 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 105/206 (50%), Positives = 139/206 (67%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M + P P FELE + R WPVAG DE GRG LAGPVV AA+ILDP IP G+NDS Sbjct: 10 MLFDEGPIVPTFELELIARRAGHWPVAGADEAGRGPLAGPVVAAAVILDPERIPQGLNDS 69 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++S +RE L+ +I ++A +SI+S+S ID +I KA+LDA+ A+ +L + L Sbjct: 70 KQLSAARREALFAEILATATVSIASSSAGRIDVTDIRKASLDAMRRAICSLAMPASYVLT 129 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG +P L C AV+KGD+ S SIAAASI+AKVTRDR+M A +P YGF +H GY Sbjct: 130 DGLDVPAGLACPGKAVVKGDARSFSIAAASIVAKVTRDRMMARAGIVFPAYGFAAHAGYG 189 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 TA+H+ I++ GP +HR++FRPLR Sbjct: 190 TAQHRAGIEKHGPCSLHRMSFRPLRR 215 >gi|257884857|ref|ZP_05664510.1| ribonuclease HII [Enterococcus faecium 1,231,501] gi|257820695|gb|EEV47843.1| ribonuclease HII [Enterococcus faecium 1,231,501] Length = 254 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 125/196 (63%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + +AGIDEVGRG LAGPVV AA+IL N I G+NDSK++S KKRE L Sbjct: 59 FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A I I Q ID NI++A+ A++ AVE L ++P LID ++ DLP Sbjct: 119 YQQVQEKALAIGIGIVDQQTIDDVNIYEASKLAMFQAVEKLSIVPSYLLID--AMTLDLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236 Query: 191 KGPSCIHRLTFRPLRN 206 +G + IHR +F P++ Sbjct: 237 QGITPIHRKSFAPVKK 252 >gi|306833475|ref|ZP_07466602.1| ribonuclease HII [Streptococcus bovis ATCC 700338] gi|304424245|gb|EFM27384.1| ribonuclease HII [Streptococcus bovis ATCC 700338] Length = 259 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 78/199 (39%), Positives = 117/199 (58%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL N +NDSKKI K EE+ Sbjct: 58 LRYEKELYQQGYQAIAGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPKKHHEEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y++I + A I I + ID+ NI++AT + A+ + + + ++ + Sbjct: 118 YQEILARALGIGIGIVDNNVIDQINIYEATKVGMLQAINQLKGEVTKPDYLLIDAMHLET 177 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +++KGD+ SLSIAAASI+AKVTRDR+M YP Y F+ +VGY T +H + +K Sbjct: 178 SIPQQSLLKGDANSLSIAAASIVAKVTRDRMMADYANDYPGYAFEKNVGYGTKEHLEGLK 237 Query: 190 EKGPSCIHRLTFRPLRNLS 208 + G + IHR TF P++++ Sbjct: 238 KYGITPIHRKTFEPIKSML 256 >gi|157151005|ref|YP_001450488.1| ribonuclease HII [Streptococcus gordonii str. Challis substr. CH1] gi|189043666|sp|A8AXH8|RNH2_STRGC RecName: Full=Ribonuclease HII; Short=RNase HII gi|157075799|gb|ABV10482.1| Ribonuclease HII (RNase HII) [Streptococcus gordonii str. Challis substr. CH1] Length = 254 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+Y Sbjct: 59 RYEKELYQSGYQAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEIY 118 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + A + I IDK NI++AT A+ A+ L + P LID + D+ Sbjct: 119 QAVMDKALAVGIGLMDSDIIDKVNIYEATKLAMKEALSKLPLKPDYLLIDAMKL--DVEI 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ SLSIAAASI+AKVTRDRLM K++P Y F + GY T +H + ++ Sbjct: 177 PQESIIKGDANSLSIAAASIVAKVTRDRLMADYDKEFPGYAFAQNAGYGTKRHLEGLEHY 236 Query: 192 GPSCIHRLTFRPLRNLS 208 G S IHR TF P++++ Sbjct: 237 GVSPIHRKTFEPVKSML 253 >gi|154686022|ref|YP_001421183.1| ribonuclease HII [Bacillus amyloliquefaciens FZB42] gi|166225167|sp|A7Z4M6|RNH2_BACA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|154351873|gb|ABS73952.1| RnhB [Bacillus amyloliquefaciens FZB42] Length = 255 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 115/195 (58%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + +K +AG+DE GRG LAGPVV A+IL G+ DSKK+S KK EE Y Sbjct: 61 AYERLSSKKGFRLIAGVDEAGRGPLAGPVVAGAVILPAECEILGLTDSKKLSEKKLEEYY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +IT A + + ID+ NI++A A+ AV L P L+D ++P D Sbjct: 121 SRITEEAAAVGVGIVHADVIDRINIYEAARLAMVKAVNALTETPDYLLVDAMTLPLD--I 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +VIKGD+ S+SIAA + IAKVTRDRLM K YP YGF+ + GY T +H + ++ Sbjct: 179 PQSSVIKGDAKSVSIAAGACIAKVTRDRLMAEYAKTYPMYGFEKNKGYGTKEHLEALQAY 238 Query: 192 GPSCIHRLTFRPLRN 206 GP+ IHR TF P+++ Sbjct: 239 GPTTIHRKTFAPVQS 253 >gi|306827335|ref|ZP_07460622.1| ribonuclease HII [Streptococcus pyogenes ATCC 10782] gi|304430482|gb|EFM33504.1| ribonuclease HII [Streptococcus pyogenes ATCC 10782] Length = 263 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 59 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ + + + ++ D+ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q +K Sbjct: 179 AISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQGLK 238 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 239 AYGITPIHRKSFEPVKSM 256 >gi|139473750|ref|YP_001128466.1| ribonuclease HII [Streptococcus pyogenes str. Manfredo] gi|209559442|ref|YP_002285914.1| ribonuclease HII [Streptococcus pyogenes NZ131] gi|166226662|sp|A2REG0|RNH2_STRPG RecName: Full=Ribonuclease HII; Short=RNase HII gi|238056782|sp|B5XLK7|RNH2_STRPZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|134271997|emb|CAM30235.1| ribonuclease HII [Streptococcus pyogenes str. Manfredo] gi|209540643|gb|ACI61219.1| Ribonuclease HII [Streptococcus pyogenes NZ131] Length = 263 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 59 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ + + + ++ D+ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q +K Sbjct: 179 AISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQGLK 238 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 239 AYGITPIHRKSFEPVKSM 256 >gi|94990506|ref|YP_598606.1| ribonuclease HII [Streptococcus pyogenes MGAS10270] gi|166226660|sp|Q1JGT2|RNH2_STRPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|94544014|gb|ABF34062.1| Ribonuclease HII [Streptococcus pyogenes MGAS10270] Length = 263 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 59 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ + + + ++ D+ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q +K Sbjct: 179 AISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQGLK 238 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 239 AYGITPIHRKSFEPVKSM 256 >gi|71903522|ref|YP_280325.1| ribonuclease HII [Streptococcus pyogenes MGAS6180] gi|97189348|sp|Q48TJ0|RNH2_STRPM RecName: Full=Ribonuclease HII; Short=RNase HII gi|71802617|gb|AAX71970.1| ribonuclease HII [Streptococcus pyogenes MGAS6180] Length = 238 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 34 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKSKHETI 93 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ + + + ++ D+ Sbjct: 94 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDI 153 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q +K Sbjct: 154 AISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQGLK 213 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 214 AYGITPIHRKSFEPVKSM 231 >gi|257878020|ref|ZP_05657673.1| ribonuclease HII [Enterococcus faecium 1,230,933] gi|257881194|ref|ZP_05660847.1| ribonuclease HII [Enterococcus faecium 1,231,502] gi|257889781|ref|ZP_05669434.1| ribonuclease HII [Enterococcus faecium 1,231,410] gi|257892282|ref|ZP_05671935.1| ribonuclease HII [Enterococcus faecium 1,231,408] gi|258616491|ref|ZP_05714261.1| ribonuclease HII [Enterococcus faecium DO] gi|260559070|ref|ZP_05831256.1| ribonuclease HII [Enterococcus faecium C68] gi|261207604|ref|ZP_05922289.1| ribonuclease HII [Enterococcus faecium TC 6] gi|289565116|ref|ZP_06445569.1| ribonuclease HII [Enterococcus faecium D344SRF] gi|293556764|ref|ZP_06675327.1| ribonuclease HII [Enterococcus faecium E1039] gi|293563422|ref|ZP_06677871.1| ribonuclease HII [Enterococcus faecium E1162] gi|293568165|ref|ZP_06679501.1| ribonuclease HII (RNase HII) [Enterococcus faecium E1071] gi|294614822|ref|ZP_06694717.1| ribonuclease HII [Enterococcus faecium E1636] gi|294617501|ref|ZP_06697132.1| ribonuclease HII [Enterococcus faecium E1679] gi|294622303|ref|ZP_06701346.1| ribonuclease HII [Enterococcus faecium U0317] gi|314938032|ref|ZP_07845342.1| ribonuclease HII [Enterococcus faecium TX0133a04] gi|314941982|ref|ZP_07848843.1| ribonuclease HII [Enterococcus faecium TX0133C] gi|314948765|ref|ZP_07852137.1| ribonuclease HII [Enterococcus faecium TX0082] gi|314951783|ref|ZP_07854822.1| ribonuclease HII [Enterococcus faecium TX0133A] gi|314991810|ref|ZP_07857268.1| ribonuclease HII [Enterococcus faecium TX0133B] gi|314995851|ref|ZP_07860938.1| ribonuclease HII [Enterococcus faecium TX0133a01] gi|257812248|gb|EEV41006.1| ribonuclease HII [Enterococcus faecium 1,230,933] gi|257816852|gb|EEV44180.1| ribonuclease HII [Enterococcus faecium 1,231,502] gi|257826141|gb|EEV52767.1| ribonuclease HII [Enterococcus faecium 1,231,410] gi|257828661|gb|EEV55268.1| ribonuclease HII [Enterococcus faecium 1,231,408] gi|260074827|gb|EEW63143.1| ribonuclease HII [Enterococcus faecium C68] gi|260077987|gb|EEW65693.1| ribonuclease HII [Enterococcus faecium TC 6] gi|289163123|gb|EFD10970.1| ribonuclease HII [Enterococcus faecium D344SRF] gi|291589155|gb|EFF20967.1| ribonuclease HII (RNase HII) [Enterococcus faecium E1071] gi|291592284|gb|EFF23898.1| ribonuclease HII [Enterococcus faecium E1636] gi|291596241|gb|EFF27503.1| ribonuclease HII [Enterococcus faecium E1679] gi|291598195|gb|EFF29293.1| ribonuclease HII [Enterococcus faecium U0317] gi|291601096|gb|EFF31385.1| ribonuclease HII [Enterococcus faecium E1039] gi|291604683|gb|EFF34168.1| ribonuclease HII [Enterococcus faecium E1162] gi|313589955|gb|EFR68800.1| ribonuclease HII [Enterococcus faecium TX0133a01] gi|313593621|gb|EFR72466.1| ribonuclease HII [Enterococcus faecium TX0133B] gi|313596062|gb|EFR74907.1| ribonuclease HII [Enterococcus faecium TX0133A] gi|313599234|gb|EFR78079.1| ribonuclease HII [Enterococcus faecium TX0133C] gi|313642607|gb|EFS07187.1| ribonuclease HII [Enterococcus faecium TX0133a04] gi|313644831|gb|EFS09411.1| ribonuclease HII [Enterococcus faecium TX0082] Length = 255 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 124/196 (63%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + +AGIDEVGRG LAGPVV AA+IL N I G+NDSK++S KKRE L Sbjct: 59 FCFEKQGYAQGHQWIAGIDEVGRGPLAGPVVAAAVILPKNEIILGLNDSKQLSEKKRELL 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A I I Q ID NI++A+ A+ AVE L ++P LID ++ DLP Sbjct: 119 YQQVQEKALAIGIGIVDQQTIDDVNIYEASKLAMIQAVEKLSIVPSYLLID--AMTLDLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +IKGD+ S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ Sbjct: 177 IQQEKIIKGDARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLER 236 Query: 191 KGPSCIHRLTFRPLRN 206 +G + IHR +F P++ Sbjct: 237 QGITPIHRKSFAPVKK 252 >gi|159184435|ref|NP_353745.2| ribonuclease HII [Agrobacterium tumefaciens str. C58] gi|39932435|sp|Q8UHG2|RNH2_AGRT5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|159139748|gb|AAK86530.2| ribonuclease HII [Agrobacterium tumefaciens str. C58] Length = 217 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 105/197 (53%), Positives = 138/197 (70%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E ++K WPVAG DE GRG LAGPVV AA+ILDP+NIP G++DSKK++ +KRE Sbjct: 20 PDFAFELEAKKKGFWPVAGTDEAGRGPLAGPVVAAAVILDPDNIPKGMDDSKKLTRQKRE 79 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I ++I+S++S+ ID NI +A+LDA+ AV L++ P L DGR P + Sbjct: 80 SLFVQIMETSIVSVASSGPGLIDSVNILRASLDAMRRAVLGLEIPPALVLADGRDRPPGI 139 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC+A AVIKGDS SLSIAAASIIAKVTRDR+M A + YGF+ H GY T H + I+ Sbjct: 140 PCEAKAVIKGDSRSLSIAAASIIAKVTRDRMMERAGVVHTSYGFEGHAGYGTPAHLRAIE 199 Query: 190 EKGPSCIHRLTFRPLRN 206 GP +HR++FRPL+ Sbjct: 200 SHGPCALHRMSFRPLKR 216 >gi|56964049|ref|YP_175780.1| ribonuclease HII [Bacillus clausii KSM-K16] gi|73917599|sp|Q5WFP1|RNH2_BACSK RecName: Full=Ribonuclease HII; Short=RNase HII gi|56910292|dbj|BAD64819.1| ribonuclease HII [Bacillus clausii KSM-K16] Length = 259 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 83/194 (42%), Positives = 116/194 (59%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E ++++ V G+DEVGRG LAGPV A IL + G+ DSKK+S KREE Sbjct: 57 WRYEQELKQRGYVAVCGVDEVGRGPLAGPVTACACILPDDFQLLGLTDSKKLSKAKREEY 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I+ A+ SI+S S ID+ NI +AT A+ A+ L L+D + D+P Sbjct: 117 AKMISEQAVAYSIASVSAAEIDEINILQATKKAMTKAINGLSQKTDHLLLDAVRL--DVP 174 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAA+S++AKV RDR M + YP YGFD+H GY TA H Q ++ Sbjct: 175 IAQTSLIKGDAKSLSIAASSVLAKVWRDRYMEELAQTYPGYGFDTHAGYGTASHLQALRT 234 Query: 191 KGPSCIHRLTFRPL 204 G + HR +FRP+ Sbjct: 235 YGMTPEHRKSFRPV 248 >gi|311030147|ref|ZP_07708237.1| Ribonuclease H [Bacillus sp. m3-13] Length = 256 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +K +AGIDEVGRG LAGPVV AA+IL + G+ DSKK++ +KRE + Sbjct: 62 YERPLWDKGCRYIAGIDEVGRGPLAGPVVAAAVILPEDFHLPGLTDSKKLNAQKREHFFR 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 + AI I + ID+ NI++AT A+ AV+NL P LID DL + Sbjct: 122 YVKEHAISYGIGIIDSREIDQVNIYEATKLAMVQAVKNLHHTPEHLLIDAMK--LDLDIE 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SIAAAS++AK TRD M+ +++PDYGFD ++GY T +H ++E G Sbjct: 180 QTSIIKGDATSISIAAASVLAKETRDTYMKNLAQEFPDYGFDKNMGYGTPEHLLALQETG 239 Query: 193 PSCIHRLTFRPLRNL 207 + HR +F P++ + Sbjct: 240 VTREHRQSFSPVKEM 254 >gi|325687470|gb|EGD29491.1| ribonuclease HII [Streptococcus sanguinis SK72] Length = 254 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYQAGHLAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A + I + ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YKEVMDKALAVGIGLMDSEMIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAKNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPVKSM 252 >gi|289578443|ref|YP_003477070.1| ribonuclease H [Thermoanaerobacter italicus Ab9] gi|289528156|gb|ADD02508.1| Ribonuclease H [Thermoanaerobacter italicus Ab9] Length = 242 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 116/196 (59%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AG+DE GRG L GPVV A +IL N INDSKK+S +KRE L E Sbjct: 48 YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKNVFIPEINDSKKLSEEKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQI-EIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A+IKGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIIKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTFRPLRNLS 208 P IHR TF + + Sbjct: 227 PCPIHRKTF--IEKIL 240 >gi|15675138|ref|NP_269312.1| ribonuclease HII [Streptococcus pyogenes M1 GAS] gi|32171707|sp|Q99ZM6|RNH2_STRP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|13622298|gb|AAK34033.1| putative ribonuclease HII [Streptococcus pyogenes M1 GAS] Length = 263 Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 116/198 (58%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 59 LSYEKALYKKGYKAIAGIDEVGRGPLAGPVVAACVILPKYCKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ + + + ++ D+ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +++KGD+ SLSIAAASI+AKVTRD++M + +P Y F + GY T +H Q +K Sbjct: 179 AISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYDFAKNAGYGTKEHLQGLK 238 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 239 AYGITPIHRKSFEPVKSM 256 >gi|254739600|ref|ZP_05197294.1| ribonuclease HII [Bacillus anthracis str. Kruger B] Length = 257 Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 93/196 (47%), Positives = 128/196 (65%), Gaps = 3/196 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPA--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNLS 208 HR +F P+++++ Sbjct: 240 VLEEHRKSFAPIKDMN 255 >gi|167040339|ref|YP_001663324.1| ribonuclease HII [Thermoanaerobacter sp. X514] gi|300914423|ref|ZP_07131739.1| Ribonuclease H [Thermoanaerobacter sp. X561] gi|307724341|ref|YP_003904092.1| Ribonuclease H [Thermoanaerobacter sp. X513] gi|166854579|gb|ABY92988.1| Ribonuclease H [Thermoanaerobacter sp. X514] gi|300889358|gb|EFK84504.1| Ribonuclease H [Thermoanaerobacter sp. X561] gi|307581402|gb|ADN54801.1| Ribonuclease H [Thermoanaerobacter sp. X513] Length = 242 Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 115/196 (58%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AG+DE GRG L GPVV A +IL INDSKK+S +KRE L E Sbjct: 48 YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEEKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQI-EIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTFRPLRNLS 208 P IHR TF + + Sbjct: 227 PCPIHRKTF--IEKIL 240 >gi|167037678|ref|YP_001665256.1| ribonuclease HII [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116093|ref|YP_004186252.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856512|gb|ABY94920.1| Ribonuclease H [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929184|gb|ADV79869.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 242 Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 115/196 (58%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AG+DE GRG L GPVV A +IL INDSKK+S +KRE L E Sbjct: 48 YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEEKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQI-EIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTFRPLRNLS 208 P IHR TF + + Sbjct: 227 PCPIHRKTF--IEKIL 240 >gi|307264856|ref|ZP_07546418.1| Ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1] gi|306920114|gb|EFN50326.1| Ribonuclease H [Thermoanaerobacter wiegelii Rt8.B1] Length = 242 Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 114/196 (58%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AG+DE GRG L GPVV A +IL INDSKK+S KKRE L E Sbjct: 48 YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVILPKEVFIPEINDSKKLSEKKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A +I + IDK NI AT A+ A+ +Q L+D +IP+ Sbjct: 108 VIKKVATSYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQI-EIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTFRPLRNLS 208 P IHR TF + + Sbjct: 227 PCPIHRKTF--IEKIL 240 >gi|239826598|ref|YP_002949222.1| ribonuclease H [Geobacillus sp. WCH70] gi|259494066|sp|C5D8U9|RNH2_GEOSW RecName: Full=Ribonuclease HII; Short=RNase HII gi|239806891|gb|ACS23956.1| Ribonuclease H [Geobacillus sp. WCH70] Length = 277 Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 122/196 (62%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + E+ + +AGIDE GRG LAGPVV AA++L + G+NDSKK+S KRE L+ Sbjct: 61 RYERQLFEQGIEYIAGIDEAGRGPLAGPVVAAAVMLPKDAYIPGLNDSKKLSEAKREMLF 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I S AI I I + ID+ NI++AT A+ AVE L P LID ++ + Sbjct: 121 HMIQSCAISIGIGVVTAAEIDEMNIYEATKKAMIKAVEQLSPKPDYLLID--AMTLPIST 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD+ S+SIAA+SIIAKVTRD M+ K+YP YGF+ ++GY TA+H + I+ Sbjct: 179 PQQSIVKGDANSVSIAASSIIAKVTRDHFMKQLAKQYPQYGFEKNMGYGTAQHLEAIRVY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G HR +F P++ + Sbjct: 239 GTIDEHRRSFSPIKEM 254 >gi|163733084|ref|ZP_02140528.1| ribonuclease HII [Roseobacter litoralis Och 149] gi|161393619|gb|EDQ17944.1| ribonuclease HII [Roseobacter litoralis Och 149] Length = 209 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 133/199 (66%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P+FE+E VAG+DEVGRG LAGPV AA++LDP NIP G+NDSK++S K+R Sbjct: 3 PNFEMEEAAMALGALRVAGVDEVGRGPLAGPVTAAAVVLDPANIPDGLNDSKQLSAKRRN 62 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L E + SSA IS+ AS + I++HNI +A+ A+ A+ L++ P LIDG +P+ L Sbjct: 63 LLGEALASSADISVGHASVEEIEQHNILRASHIAMLRALAGLRLRPDYVLIDGSMVPKGL 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +A V+KGD+ LSI+AASIIAK+ RD++M +++P YG+++++GY + H ++ Sbjct: 123 NLRAQPVVKGDTRCLSISAASIIAKIARDKIMVDLAQQHPGYGWETNMGYGSKSHISALR 182 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + HR TF+P+ ++ Sbjct: 183 NLGVTPHHRRTFKPVHHML 201 >gi|331701419|ref|YP_004398378.1| ribonuclease H [Lactobacillus buchneri NRRL B-30929] gi|329128762|gb|AEB73315.1| Ribonuclease H [Lactobacillus buchneri NRRL B-30929] Length = 257 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 125/198 (63%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E + + VAG+DEVGRG LAGPVV AA+IL + +NDSK+++ +R EL Sbjct: 60 FKYERSFWHQGLQYVAGVDEVGRGPLAGPVVAAAVILPHDFDLVSVNDSKQLTPTQRAEL 119 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I++ A + I S + ID+ NI++AT A+ AVE+L P ++D ++ +P Sbjct: 120 APLISAEALSVGIGSVDNHGIDELNIYQATRVAMKQAVESLTPQPDEIIVD--AMQIPVP 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S+S++AASI+AKV RD LM K+YP+Y F + GY TAKH +KE Sbjct: 178 IRQTRLIKGDAKSISVSAASIVAKVYRDHLMDEYAKQYPEYDFPHNAGYGTAKHLAALKE 237 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP+ IHR++F P++ S Sbjct: 238 LGPTPIHRMSFAPVKKFS 255 >gi|319947076|ref|ZP_08021310.1| ribonuclease HII [Streptococcus australis ATCC 700641] gi|319747124|gb|EFV99383.1| ribonuclease HII [Streptococcus australis ATCC 700641] Length = 256 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 82/198 (41%), Positives = 124/198 (62%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI K + + Sbjct: 58 LTYEKELYAQGIQLIAGVDEVGRGPLAGPVVAAAVILPENCKILGLNDSKKIPKSKHQAI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + I +Q ID+ NI++AT A+ A++ L P+ LID + D+P Sbjct: 118 YQAVLDQALSVGIGVKDNQVIDQVNIYEATKLAMLEAIQELDQQPQHLLIDAMKL--DVP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M ++YP Y F + GY T KH + +++ Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDQMMAAYDQEYPGYDFGQNAGYGTTKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + IHR +F P+++++ Sbjct: 236 HGVTPIHRRSFEPIKSMT 253 >gi|322387852|ref|ZP_08061460.1| ribonuclease HII [Streptococcus infantis ATCC 700779] gi|321141354|gb|EFX36851.1| ribonuclease HII [Streptococcus infantis ATCC 700779] Length = 259 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 123/195 (63%), Gaps = 3/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK EE+ Sbjct: 58 LSYEKELYIQGINLIAGVDEVGRGPLAGPVVAAAVILPQNCKIKGLNDSKKIPKKKHEEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + +A I I + ID+ NI++AT A+ A+ L+ P LID + DLP Sbjct: 118 FQAVKENALAIGIGIMDNHVIDQVNIYEATKLAMNEAISQLEPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASIIAKVTRD++M +++P Y F + GY TAKH + I++ Sbjct: 176 ISQTSIIKGDANSLSIAAASIIAKVTRDKIMANYDEEFPGYDFAQNAGYGTAKHIEGIEK 235 Query: 191 KGPSCIHRLTFRPLR 205 G + IHR +F P++ Sbjct: 236 HGVTPIHRTSFEPIK 250 >gi|159042579|ref|YP_001531373.1| ribonuclease HII [Dinoroseobacter shibae DFL 12] gi|189043594|sp|A8LJU6|RNH2_DINSH RecName: Full=Ribonuclease HII; Short=RNase HII gi|157910339|gb|ABV91772.1| ribonuclease HII [Dinoroseobacter shibae DFL 12] Length = 206 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 94/200 (47%), Positives = 133/200 (66%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 RPHF+ E + + +AG+DEVGRG LAGPV+ AA++LDP IP G+NDSK+++ K+R Sbjct: 3 RPHFQFETDLAARGYLRIAGVDEVGRGPLAGPVMAAAVVLDPGAIPEGLNDSKQVTAKRR 62 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L ++ A + + A ID+ NI +A A+ A++ L P ALIDGR P+D Sbjct: 63 EALAAQLAQVAQVGVGVAEVAEIDRLNIRRAAHLAMLRALDALPAPPDMALIDGRDRPDD 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LPC A A+IKGD+ SLSIAAASI+AKV RDR+M ++P YG++++ GYPT H+ + Sbjct: 123 LPCAAHAIIKGDTKSLSIAAASIVAKVARDRVMTALAAEFPGYGWETNAGYPTQAHRAAL 182 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 + G S HR +FRP+ N+ Sbjct: 183 LDIGVSPHHRRSFRPVHNIL 202 >gi|289167905|ref|YP_003446174.1| ribonuclease HII [Streptococcus mitis B6] gi|288907472|emb|CBJ22309.1| ribonuclease HII [Streptococcus mitis B6] Length = 259 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 126/197 (63%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + VAG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLVAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQNQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + +++ Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEFDQQFPGYDFATNAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P+++L Sbjct: 236 LGVTPIHRTSFEPVKSL 252 >gi|332076292|gb|EGI86758.1| ribonuclease HII [Streptococcus pneumoniae GA41301] Length = 259 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQVVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|301794258|emb|CBW36679.1| ribonuclease HII [Streptococcus pneumoniae INV104] gi|332203012|gb|EGJ17080.1| ribonuclease HII [Streptococcus pneumoniae GA47901] Length = 259 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQVVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|307708682|ref|ZP_07645145.1| ribonuclease HII [Streptococcus mitis NCTC 12261] gi|307615256|gb|EFN94466.1| ribonuclease HII [Streptococcus mitis NCTC 12261] Length = 259 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 88/209 (42%), Positives = 128/209 (61%), Gaps = 3/209 (1%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 + + E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSK Sbjct: 48 LDEDLRLKSMLSYEKELYKQGLTMIAGVDEVGRGPLAGPVVAAAVILPKNCKITGLNDSK 107 Query: 62 KISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KI KK E+++ + A I I +Q ID+ NI++AT A+ A+ L P LI Sbjct: 108 KIPKKKHLEIFQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLI 167 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 D + DLP ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY Sbjct: 168 DAMKL--DLPISQTSIIKGDANSLSIAAASIVAKVTRDELMKEFDQQFPGYDFAANAGYG 225 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 TAKH + +K+ G + IHR +F P+++L + Sbjct: 226 TAKHLEGLKKIGVTPIHRTSFEPVKSLVL 254 >gi|228928885|ref|ZP_04091917.1| Ribonuclease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229092879|ref|ZP_04224013.1| Ribonuclease [Bacillus cereus Rock3-42] gi|228690501|gb|EEL44284.1| Ribonuclease [Bacillus cereus Rock3-42] gi|228830692|gb|EEM76297.1| Ribonuclease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 257 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|332075090|gb|EGI85561.1| ribonuclease HII [Streptococcus pneumoniae GA17545] Length = 260 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|168486442|ref|ZP_02710950.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1087-00] gi|168577174|ref|ZP_02722989.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae MLV-016] gi|182684110|ref|YP_001835857.1| ribonuclease HII [Streptococcus pneumoniae CGSP14] gi|194396938|ref|YP_002037768.1| ribonuclease HII [Streptococcus pneumoniae G54] gi|237650103|ref|ZP_04524355.1| ribonuclease HII [Streptococcus pneumoniae CCRI 1974] gi|237822305|ref|ZP_04598150.1| ribonuclease HII [Streptococcus pneumoniae CCRI 1974M2] gi|303255770|ref|ZP_07341812.1| ribonuclease HII [Streptococcus pneumoniae BS455] gi|303260563|ref|ZP_07346529.1| ribonuclease HII [Streptococcus pneumoniae SP-BS293] gi|303262697|ref|ZP_07348636.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS292] gi|303265232|ref|ZP_07351143.1| ribonuclease HII [Streptococcus pneumoniae BS397] gi|303266995|ref|ZP_07352869.1| ribonuclease HII [Streptococcus pneumoniae BS457] gi|303269263|ref|ZP_07355038.1| ribonuclease HII [Streptococcus pneumoniae BS458] gi|238690822|sp|B5E4Q2|RNH2_STRP4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238691160|sp|B2IPW8|RNH2_STRPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|182629444|gb|ACB90392.1| ribonuclease HII [Streptococcus pneumoniae CGSP14] gi|183570488|gb|EDT91016.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1087-00] gi|183577232|gb|EDT97760.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae MLV-016] gi|194356605|gb|ACF55053.1| ribonuclease HII [Streptococcus pneumoniae G54] gi|301801974|emb|CBW34702.1| ribonuclease HII [Streptococcus pneumoniae INV200] gi|302597282|gb|EFL64386.1| ribonuclease HII [Streptococcus pneumoniae BS455] gi|302636129|gb|EFL66625.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS292] gi|302638276|gb|EFL68745.1| ribonuclease HII [Streptococcus pneumoniae SP-BS293] gi|302641220|gb|EFL71592.1| ribonuclease HII [Streptococcus pneumoniae BS458] gi|302643475|gb|EFL73748.1| ribonuclease HII [Streptococcus pneumoniae BS457] gi|302645203|gb|EFL75439.1| ribonuclease HII [Streptococcus pneumoniae BS397] gi|332200480|gb|EGJ14552.1| ribonuclease HII [Streptococcus pneumoniae GA41317] Length = 259 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|149013109|ref|ZP_01833955.1| ribonuclease HII [Streptococcus pneumoniae SP19-BS75] gi|147763054|gb|EDK69997.1| ribonuclease HII [Streptococcus pneumoniae SP19-BS75] Length = 259 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|149006184|ref|ZP_01829896.1| ribonuclease HII [Streptococcus pneumoniae SP18-BS74] gi|225861097|ref|YP_002742606.1| ribonuclease HII [Streptococcus pneumoniae Taiwan19F-14] gi|298230996|ref|ZP_06964677.1| ribonuclease HII [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255436|ref|ZP_06979022.1| ribonuclease HII [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502841|ref|YP_003724781.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A] gi|307127247|ref|YP_003879278.1| ribonuclease HII [Streptococcus pneumoniae 670-6B] gi|254807994|sp|C1CRN4|RNH2_STRZT RecName: Full=Ribonuclease HII; Short=RNase HII gi|147761961|gb|EDK68923.1| ribonuclease HII [Streptococcus pneumoniae SP18-BS74] gi|225727970|gb|ACO23821.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae Taiwan19F-14] gi|298238436|gb|ADI69567.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A] gi|306484309|gb|ADM91178.1| ribonuclease HII [Streptococcus pneumoniae 670-6B] gi|327389302|gb|EGE87647.1| ribonuclease HII [Streptococcus pneumoniae GA04375] Length = 259 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|330722242|gb|EGH00125.1| Ribonuclease HII [gamma proteobacterium IMCC2047] Length = 203 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 92/187 (49%), Positives = 118/187 (63%), Gaps = 2/187 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 + VAG+DEVGRG LAGPVV AA+IL+P N G+ DSKK++ K+RE L+ I A Sbjct: 9 LGLVAGVDEVGRGPLAGPVVAAAVILNPANPIEGLADSKKLTEKRREALFPLIQERALAW 68 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I+ AS ID+ NI A+L A+ AV L P L+DG P DLP + A+IKGDS Sbjct: 69 CIARASEAEIDRLNILHASLLAMRRAVLGLSQQPDRVLVDGNRCP-DLPYPSEAIIKGDS 127 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+AASI+AKV RD M + YP YGF H GYPTA+H Q +K G + IHR +F Sbjct: 128 KIEAISAASILAKVVRDNEMVAFEETYPGYGFAKHKGYPTAQHMQALKTLGVTPIHRRSF 187 Query: 202 RPLRNLS 208 P++NL Sbjct: 188 APVKNLL 194 >gi|297544719|ref|YP_003677021.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842494|gb|ADH61010.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 242 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 116/196 (59%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AGIDE GRG L GPVV A +IL N INDSKK+S +KRE L E Sbjct: 48 YENQLYQLNLNFIAGIDEAGRGPLVGPVVAACVILPKNVFIPEINDSKKLSEEKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQI-EIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A+IKGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIIKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTFRPLRNLS 208 P IHR TF + + Sbjct: 227 PCPIHRKTF--IEKIL 240 >gi|312866631|ref|ZP_07726846.1| ribonuclease HII [Streptococcus parasanguinis F0405] gi|311097930|gb|EFQ56159.1| ribonuclease HII [Streptococcus parasanguinis F0405] Length = 255 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + M +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K +E+ Sbjct: 58 LTYEKECYARGMELIAGVDEVGRGPLAGPVVAAAVILPKACKIPGLNDSKKIPKSKHKEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE + +AI I I + ID+ NI++AT A+ A+ L P+ LID + DLP Sbjct: 118 YEAVLQNAIAIGIGIKDNHVIDQVNIYEATKLAMMEAIGQLDPQPQHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M ++YP Y F + GY TAKH +++ Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDQMMEEFDREYPGYDFAQNAGYGTAKHLDGLEQ 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 236 LGVTPIHRRSFEPVKSM 252 >gi|218904966|ref|YP_002452800.1| ribonuclease HII [Bacillus cereus AH820] gi|226736812|sp|B7JJB6|RNH2_BACC0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|218537806|gb|ACK90204.1| ribonuclease HII [Bacillus cereus AH820] Length = 257 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKAKAIAIGVXIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|217977760|ref|YP_002361907.1| Ribonuclease H [Methylocella silvestris BL2] gi|217503136|gb|ACK50545.1| Ribonuclease H [Methylocella silvestris BL2] Length = 208 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 101/199 (50%), Positives = 133/199 (66%), Gaps = 1/199 (0%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 +RP F LE + +++WPVAG+DE GRG LAGPV AA+ILDP+N+P G+NDSK+++ ++ Sbjct: 8 DRPDFRLERKLLRRDVWPVAGVDEAGRGPLAGPVAAAAVILDPDNLPRGLNDSKQLTREE 67 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE+LYE I A +++ +S + ID NI +AT A+ A+ L PR LIDG + Sbjct: 68 REKLYESIMKRALAVAVGFSSVKEIDAVNIRQATFRAMRRALAALAASPRYVLIDGNDLA 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 DL C+ ++KGD+ LSIAAASI+AKVTRDRLM +P YGF HVGY T H Q Sbjct: 128 PDLCCEGETIVKGDASILSIAAASIVAKVTRDRLMSRLCAVHPVYGFSQHVGYGTPAHLQ 187 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I+ GP HRLTFRP R Sbjct: 188 AIEAHGPCPFHRLTFRPFR 206 >gi|217961257|ref|YP_002339825.1| ribonuclease HII [Bacillus cereus AH187] gi|229197947|ref|ZP_04324662.1| Ribonuclease [Bacillus cereus m1293] gi|226736815|sp|B7HLH0|RNH2_BACC7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|217062970|gb|ACJ77220.1| ribonuclease HII [Bacillus cereus AH187] gi|228585526|gb|EEK43629.1| Ribonuclease [Bacillus cereus m1293] Length = 257 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 ILEEHRKSFAPIKDM 254 >gi|312869151|ref|ZP_07729325.1| ribonuclease HII [Lactobacillus oris PB013-T2-3] gi|311095397|gb|EFQ53667.1| ribonuclease HII [Lactobacillus oris PB013-T2-3] Length = 255 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 82/194 (42%), Positives = 115/194 (59%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + + VAG+DEVGRG LAGPVV A+ILDP+ G+ DSK+++ +RE+L Sbjct: 60 FNYERQLWQSGCRYVAGMDEVGRGPLAGPVVTCAVILDPDFDLIGVTDSKQLTRHEREQL 119 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A +SI+ + ID+ NI+ AT DA+ AV NL P ++D +P D Sbjct: 120 YLRIVDEAVEVSIAVNDRKTIDRLNIYAATQDAMMRAVRNLNHRPDHLIVDAVPLPFD-- 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD S+S+AAASI+AK RD LM+ + YP YGF ++GY T +H + Sbjct: 178 YPQTTLIKGDQKSISVAAASIVAKEYRDHLMKDYDRVYPGYGFAENMGYGTKEHLAGLAR 237 Query: 191 KGPSCIHRLTFRPL 204 G IHR +F P+ Sbjct: 238 LGACPIHRRSFNPV 251 >gi|327460345|gb|EGF06682.1| ribonuclease HII [Streptococcus sanguinis SK1057] Length = 254 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +++ Sbjct: 58 LRYEKELYQAGYQTIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQDI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + I + ID+ NI++AT A+ A+ L++ LID + D Sbjct: 118 YQAVMDKALAVGIGLMDSEIIDQVNIYEATKLAMKEALSKLRLKSDYLLIDAMKLDVD-- 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM K++P Y F + GY T H Q +++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKEFPGYDFAQNAGYGTKSHLQGLEQ 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPVKSM 252 >gi|296876487|ref|ZP_06900538.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912] gi|296432480|gb|EFH18276.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912] Length = 255 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + M +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K +E+ Sbjct: 58 LAYEKECYARGMELIAGVDEVGRGPLAGPVVAAAVILPKACKIPGLNDSKKIPKSKHKEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE + +A+ I I +Q ID+ NI++AT A+ A+ L+ P+ LID + DLP Sbjct: 118 YEAVLQNAVAIGIGIKDNQVIDQVNIYEATKLAMMEAIGQLEPQPQHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M K+YP Y F + GY TAKH + + Sbjct: 176 ISQISIIKGDANSLSIAAASIVAKVTRDQMMEEFDKEYPGYDFAQNAGYGTAKHLAGLDK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 236 LGVTPIHRRSFEPVKSM 252 >gi|228935151|ref|ZP_04097978.1| Ribonuclease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824516|gb|EEM70321.1| Ribonuclease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 257 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 126/195 (64%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL LID +P P Sbjct: 122 EIKEKAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTTEYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|228916474|ref|ZP_04080040.1| Ribonuclease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228947556|ref|ZP_04109846.1| Ribonuclease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123351|ref|ZP_04252555.1| Ribonuclease [Bacillus cereus 95/8201] gi|228660127|gb|EEL15763.1| Ribonuclease [Bacillus cereus 95/8201] gi|228812076|gb|EEM58407.1| Ribonuclease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228843053|gb|EEM88135.1| Ribonuclease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 257 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|49478406|ref|YP_037898.1| ribonuclease HII [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118479059|ref|YP_896210.1| ribonuclease HII [Bacillus thuringiensis str. Al Hakam] gi|225865818|ref|YP_002751196.1| ribonuclease HII [Bacillus cereus 03BB102] gi|229186077|ref|ZP_04313246.1| Ribonuclease [Bacillus cereus BGSC 6E1] gi|301055327|ref|YP_003793538.1| ribonuclease HII [Bacillus anthracis CI] gi|73917596|sp|Q6HEX8|RNH2_BACHK RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225168|sp|A0RHL0|RNH2_BACAH RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807966|sp|C1EP61|RNH2_BACC3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|49329962|gb|AAT60608.1| ribonuclease HII (RNase HII) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118418284|gb|ABK86703.1| RNase HII [Bacillus thuringiensis str. Al Hakam] gi|225786445|gb|ACO26662.1| ribonuclease HII [Bacillus cereus 03BB102] gi|228597253|gb|EEK54904.1| Ribonuclease [Bacillus cereus BGSC 6E1] gi|300377496|gb|ADK06400.1| ribonuclease HII [Bacillus cereus biovar anthracis str. CI] Length = 257 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|206890782|ref|YP_002248663.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742720|gb|ACI21777.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347] Length = 201 Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 115/198 (58%), Gaps = 1/198 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F + R + +AGIDE GRG LAGPVV A + + GI DSK++SH++RE L Sbjct: 4 FAFDESFRLQGYNLIAGIDEAGRGCLAGPVVAACVSFRDSVFIEGIKDSKELSHEQRESL 63 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +++I A + I ID+ NI +AT A+ A ENL LID L Sbjct: 64 FQEIIKHAFVGIGIVDVDLIDRVNILEATRLAMMEAFENLGREIELLLIDAV-ELPALKV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD S SIA+ASI+AKVTRDR+MR H+ YP YGFD H GY T +H +K+ Sbjct: 123 DQKALIKGDRKSASIASASIVAKVTRDRIMRQYHEAYPMYGFDKHKGYGTKEHLNALKKF 182 Query: 192 GPSCIHRLTFRPLRNLSV 209 GP IHR +F P+R L + Sbjct: 183 GPCPIHRKSFSPVRELML 200 >gi|30263840|ref|NP_846217.1| ribonuclease HII [Bacillus anthracis str. Ames] gi|47529265|ref|YP_020614.1| ribonuclease HII [Bacillus anthracis str. 'Ames Ancestor'] gi|49186687|ref|YP_029939.1| ribonuclease HII [Bacillus anthracis str. Sterne] gi|65321164|ref|ZP_00394123.1| COG0164: Ribonuclease HII [Bacillus anthracis str. A2012] gi|167642027|ref|ZP_02400257.1| ribonuclease HII [Bacillus anthracis str. A0193] gi|170689655|ref|ZP_02880835.1| ribonuclease HII [Bacillus anthracis str. A0465] gi|170709356|ref|ZP_02899770.1| ribonuclease HII [Bacillus anthracis str. A0389] gi|177655996|ref|ZP_02937123.1| ribonuclease HII [Bacillus anthracis str. A0174] gi|227813255|ref|YP_002813264.1| ribonuclease HII [Bacillus anthracis str. CDC 684] gi|229600963|ref|YP_002868074.1| ribonuclease HII [Bacillus anthracis str. A0248] gi|254683456|ref|ZP_05147316.1| ribonuclease HII [Bacillus anthracis str. CNEVA-9066] gi|254721977|ref|ZP_05183766.1| ribonuclease HII [Bacillus anthracis str. A1055] gi|254735875|ref|ZP_05193581.1| ribonuclease HII [Bacillus anthracis str. Western North America USA6153] gi|254759311|ref|ZP_05211336.1| ribonuclease HII [Bacillus anthracis str. Australia 94] gi|39932347|sp|Q81WJ9|RNH2_BACAN RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807964|sp|C3P5N8|RNH2_BACAA RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807965|sp|C3L790|RNH2_BACAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|30258484|gb|AAP27703.1| ribonuclease HII [Bacillus anthracis str. Ames] gi|47504413|gb|AAT33089.1| ribonuclease HII [Bacillus anthracis str. 'Ames Ancestor'] gi|49180614|gb|AAT55990.1| ribonuclease HII [Bacillus anthracis str. Sterne] gi|167510007|gb|EDR85423.1| ribonuclease HII [Bacillus anthracis str. A0193] gi|170125730|gb|EDS94643.1| ribonuclease HII [Bacillus anthracis str. A0389] gi|170666379|gb|EDT17162.1| ribonuclease HII [Bacillus anthracis str. A0465] gi|172079895|gb|EDT65003.1| ribonuclease HII [Bacillus anthracis str. A0174] gi|227003723|gb|ACP13466.1| ribonuclease HII [Bacillus anthracis str. CDC 684] gi|229265371|gb|ACQ47008.1| ribonuclease HII [Bacillus anthracis str. A0248] Length = 257 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYG 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKAKAIAIGVGIVSPQVIDEINIYQATKQAMLDAIANLSCTPEYLLIDAMKLPA--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|256003759|ref|ZP_05428747.1| Ribonuclease H [Clostridium thermocellum DSM 2360] gi|281417482|ref|ZP_06248502.1| Ribonuclease H [Clostridium thermocellum JW20] gi|255992320|gb|EEU02414.1| Ribonuclease H [Clostridium thermocellum DSM 2360] gi|281408884|gb|EFB39142.1| Ribonuclease H [Clostridium thermocellum JW20] gi|316940489|gb|ADU74523.1| Ribonuclease H [Clostridium thermocellum DSM 1313] Length = 261 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 119/189 (62%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E ++ +AGIDE GRG LAGPVV AA+IL + G+NDSKK++ +RE+L++ Sbjct: 68 YEKEAYQRGYKLIAGIDEAGRGPLAGPVVAAAVILPQDVFIEGLNDSKKLTENQREKLFD 127 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI + I + ID+ NI AT A+ AV NL+ +P ID + D+ + Sbjct: 128 VINDKAIGVGIGIVDEKQIDEINILNATKKAMKLAVGNLKPVPDILFIDSLKLD-DINIE 186 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +++KGD+ S+SIAAASIIAKVTRDR++R KKYP YGF H GY T +H + IK+ G Sbjct: 187 QNSIVKGDAKSVSIAAASIIAKVTRDRILREMDKKYPMYGFARHKGYGTGEHIEAIKKYG 246 Query: 193 PSCIHRLTF 201 IHR++F Sbjct: 247 ICPIHRVSF 255 >gi|125973279|ref|YP_001037189.1| ribonuclease HII [Clostridium thermocellum ATCC 27405] gi|189043587|sp|A3DDG7|RNH2_CLOTH RecName: Full=Ribonuclease HII; Short=RNase HII gi|125713504|gb|ABN51996.1| RNase HII [Clostridium thermocellum ATCC 27405] Length = 256 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 119/189 (62%), Gaps = 2/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E ++ +AGIDE GRG LAGPVV AA+IL + G+NDSKK++ +RE+L++ Sbjct: 63 YEKEAYQRGYKLIAGIDEAGRGPLAGPVVAAAVILPQDVFIEGLNDSKKLTENQREKLFD 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI + I + ID+ NI AT A+ AV NL+ +P ID + D+ + Sbjct: 123 VINDKAIGVGIGIVDEKQIDEINILNATKKAMKLAVGNLKPVPDILFIDSLKLD-DINIE 181 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +++KGD+ S+SIAAASIIAKVTRDR++R KKYP YGF H GY T +H + IK+ G Sbjct: 182 QNSIVKGDAKSVSIAAASIIAKVTRDRILREMDKKYPMYGFARHKGYGTGEHIEAIKKYG 241 Query: 193 PSCIHRLTF 201 IHR++F Sbjct: 242 ICPIHRVSF 250 >gi|307703411|ref|ZP_07640353.1| ribonuclease HII family protein [Streptococcus oralis ATCC 35037] gi|307622818|gb|EFO01813.1| ribonuclease HII family protein [Streptococcus oralis ATCC 35037] Length = 203 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 2 LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEI 61 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y + A I I +Q ID+ NI++AT A+ A+ + P LID + +L Sbjct: 62 YHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQVSPKPEHLLIDAMKL--ELS 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD LM+ ++YP Y F ++ GY TAKH + +++ Sbjct: 120 IPQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKHLEGLEK 179 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 180 LGVTPIHRTSFEPVKTL 196 >gi|293365454|ref|ZP_06612163.1| ribonuclease HII [Streptococcus oralis ATCC 35037] gi|291315822|gb|EFE56266.1| ribonuclease HII [Streptococcus oralis ATCC 35037] Length = 259 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y + A I I +Q ID+ NI++AT A+ A+ + P LID + +L Sbjct: 118 YHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQVSPKPEHLLIDAMKL--ELS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD LM+ ++YP Y F ++ GY TAKH + +++ Sbjct: 176 IPQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTPIHRTSFEPVKTL 252 >gi|42782929|ref|NP_980176.1| ribonuclease HII [Bacillus cereus ATCC 10987] gi|222097282|ref|YP_002531339.1| ribonuclease hii [Bacillus cereus Q1] gi|73917595|sp|Q732N3|RNH2_BACC1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807967|sp|B9IVC6|RNH2_BACCQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|42738856|gb|AAS42784.1| ribonuclease HII [Bacillus cereus ATCC 10987] gi|221241340|gb|ACM14050.1| ribonuclease HII [Bacillus cereus Q1] Length = 257 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 ILEEHRKSFAPIKDM 254 >gi|47570338|ref|ZP_00240983.1| ribonuclease HII [Bacillus cereus G9241] gi|47553003|gb|EAL11409.1| ribonuclease HII [Bacillus cereus G9241] gi|324327734|gb|ADY22994.1| ribonuclease HII [Bacillus thuringiensis serovar finitimus YBT-020] Length = 257 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 ILEEHRKSFAPIKDM 254 >gi|270292737|ref|ZP_06198948.1| ribonuclease HII [Streptococcus sp. M143] gi|270278716|gb|EFA24562.1| ribonuclease HII [Streptococcus sp. M143] Length = 259 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 124/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ M +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGMTFIAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I + +Q ID+ NI++AT A+ A+ L P LID ++ DLP Sbjct: 118 FQAVQDQALAIGVGIMDNQIIDQVNIYEATKLAMKEAISQLSPQPEHLLID--AMQLDLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD +M+ +YP Y F ++ GY TAKH + +++ Sbjct: 176 ISQTAIIKGDANSLSIAAASIVAKVTRDNIMKDYDNQYPGYDFAANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTPIHRTSFEPVKTL 252 >gi|212212281|ref|YP_002303217.1| ribonuclease HII [Coxiella burnetii CbuG_Q212] gi|238056775|sp|B6IZE4|RNH2_COXB2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|212010691|gb|ACJ18072.1| ribonuclease HII [Coxiella burnetii CbuG_Q212] Length = 202 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG LAGPV+ AA+IL+P I G+ DSKK+S KKREELYEKI ++ +I Sbjct: 13 LIAGVDEAGRGPLAGPVITAAVILNPEIIIEGLADSKKLSLKKREELYEKIITNCKAFAI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI +ATL A+ A+ L + P LIDG DLP + A+++GD Sbjct: 73 ARADVEEIDRLNIFRATLLAMQRAINQLSIQPDKVLIDG-HCCPDLPYETQAIVQGDQNV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR M +YPDYGF H GY T H I G + +HR +F P Sbjct: 132 PAISAASILAKVTRDREMLKYDAQYPDYGFAIHKGYGTKAHLAAIHRFGITPVHRKSFEP 191 Query: 204 LRNLSV 209 +R L + Sbjct: 192 VRQLKL 197 >gi|29654636|ref|NP_820328.1| ribonuclease HII [Coxiella burnetii RSA 493] gi|153208943|ref|ZP_01947156.1| ribonuclease HII [Coxiella burnetii 'MSU Goat Q177'] gi|154706026|ref|YP_001424775.1| ribonuclease HII [Coxiella burnetii Dugway 5J108-111] gi|161830417|ref|YP_001597185.1| ribonuclease HII [Coxiella burnetii RSA 331] gi|165924003|ref|ZP_02219835.1| ribonuclease HII [Coxiella burnetii RSA 334] gi|212218749|ref|YP_002305536.1| ribonuclease HII [Coxiella burnetii CbuK_Q154] gi|39932366|sp|Q83BZ8|RNH2_COXBU RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043589|sp|A9KGD3|RNH2_COXBN RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043590|sp|A9N8L5|RNH2_COXBR RecName: Full=Ribonuclease HII; Short=RNase HII gi|238056774|sp|B6J7Z2|RNH2_COXB1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|29541904|gb|AAO90842.1| ribonuclease HII [Coxiella burnetii RSA 493] gi|120575601|gb|EAX32225.1| ribonuclease HII [Coxiella burnetii 'MSU Goat Q177'] gi|154355312|gb|ABS76774.1| ribonuclease HII [Coxiella burnetii Dugway 5J108-111] gi|161762284|gb|ABX77926.1| ribonuclease HII [Coxiella burnetii RSA 331] gi|165916548|gb|EDR35152.1| ribonuclease HII [Coxiella burnetii RSA 334] gi|212013011|gb|ACJ20391.1| ribonuclease HII [Coxiella burnetii CbuK_Q154] Length = 202 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 119/186 (63%), Gaps = 2/186 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG LAGPV+ AA+IL+P I G+ DSKK+S KKREELYEKI ++ +I Sbjct: 13 LIAGVDEAGRGPLAGPVITAAVILNPEIIIEGLADSKKLSLKKREELYEKIITNCKAFAI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI +ATL A+ A+ L + P LIDG DLP + A+++GD Sbjct: 73 ARADVEEIDRLNIFRATLLAMQRAINQLSIQPDKVLIDG-HCCPDLPYETQAIVQGDQNV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR M +YPDYGF H GY T H I G + +HR +F P Sbjct: 132 PAISAASILAKVTRDREMLKYDAQYPDYGFAIHKGYGTKAHLAAIHRFGITPVHRKSFEP 191 Query: 204 LRNLSV 209 +R L + Sbjct: 192 VRQLKL 197 >gi|218898990|ref|YP_002447401.1| ribonuclease HII [Bacillus cereus G9842] gi|228902340|ref|ZP_04066497.1| Ribonuclease [Bacillus thuringiensis IBL 4222] gi|228909662|ref|ZP_04073485.1| Ribonuclease [Bacillus thuringiensis IBL 200] gi|228966782|ref|ZP_04127826.1| Ribonuclease [Bacillus thuringiensis serovar sotto str. T04001] gi|226736813|sp|B7IUJ6|RNH2_BACC2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|218543986|gb|ACK96380.1| ribonuclease HII [Bacillus cereus G9842] gi|228792881|gb|EEM40439.1| Ribonuclease [Bacillus thuringiensis serovar sotto str. T04001] gi|228849951|gb|EEM94782.1| Ribonuclease [Bacillus thuringiensis IBL 200] gi|228857309|gb|EEN01812.1| Ribonuclease [Bacillus thuringiensis IBL 4222] Length = 257 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGVTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQVIDDINIYQATKQAMLDAVANLSCTPQHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP+YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLDEHRKSFAPIKDM 254 >gi|168492508|ref|ZP_02716651.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC0288-04] gi|168493082|ref|ZP_02717225.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC3059-06] gi|221231870|ref|YP_002511022.1| ribonuclease HII [Streptococcus pneumoniae ATCC 700669] gi|225854632|ref|YP_002736144.1| ribonuclease HII [Streptococcus pneumoniae JJA] gi|254807990|sp|B8ZQ37|RNH2_STRPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807992|sp|C1CEC3|RNH2_STRZJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|183573321|gb|EDT93849.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC0288-04] gi|183576643|gb|EDT97171.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC3059-06] gi|220674330|emb|CAR68876.1| ribonuclease HII [Streptococcus pneumoniae ATCC 700669] gi|225722957|gb|ACO18810.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae JJA] Length = 259 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + + GIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|15903088|ref|NP_358638.1| ribonuclease HII [Streptococcus pneumoniae R6] gi|116515974|ref|YP_816494.1| ribonuclease HII [Streptococcus pneumoniae D39] gi|148985764|ref|ZP_01818892.1| ribonuclease HII [Streptococcus pneumoniae SP3-BS71] gi|32171635|sp|Q8DPR3|RNH2_STRR6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|122278620|sp|Q04KF4|RNH2_STRP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|15458664|gb|AAK99848.1| Ribonuclease H [Streptococcus pneumoniae R6] gi|116076550|gb|ABJ54270.1| ribonuclease HII [Streptococcus pneumoniae D39] gi|147922068|gb|EDK73191.1| ribonuclease HII [Streptococcus pneumoniae SP3-BS71] gi|301800096|emb|CBW32697.1| ribonuclease HII [Streptococcus pneumoniae OXC141] Length = 259 Score = 197 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + + GIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|322385535|ref|ZP_08059179.1| ribonuclease HII [Streptococcus cristatus ATCC 51100] gi|321270273|gb|EFX53189.1| ribonuclease HII [Streptococcus cristatus ATCC 51100] Length = 254 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL PN G+NDSKKI KK EE+ Sbjct: 58 LRYEKELYSQGFQALAGIDEVGRGPLAGPVVAAAVILPPNCKIKGLNDSKKIPKKKHEEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + + +Q ID+ NI++AT A+ AV L++ P LID + DL Sbjct: 118 YQAVLDHALAVGLGIMDNQTIDRVNIYEATKLAMLEAVAQLKIKPDYLLIDAMKL--DLS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M + YP Y F + GY T H Q ++ Sbjct: 176 LPQQSIIKGDANSLSIAAASIVAKVTRDKMMADFDQIYPGYDFAQNAGYGTKSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPVKSM 252 >gi|21910354|ref|NP_664622.1| ribonuclease HII [Streptococcus pyogenes MGAS315] gi|28895931|ref|NP_802281.1| ribonuclease HII [Streptococcus pyogenes SSI-1] gi|32171668|sp|Q8K7G7|RNH2_STRP3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|21904551|gb|AAM79425.1| putative ribonuclease HII [Streptococcus pyogenes MGAS315] gi|28811181|dbj|BAC64114.1| putative ribonuclease HII [Streptococcus pyogenes SSI-1] Length = 263 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K E + Sbjct: 59 LSYEKALYKEGYQAIAGIDEVGRGPLAGPVVAACVILPQHCKIKGLNDSKKIPKAKHETI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ + A I I +Q ID+ NI++AT A+ A++ + + + ++ D+ Sbjct: 119 YQAVKEKALAIGIGIIDNQLIDEVNIYEATKLAMLEAIKQLEGQLTQPDYLLIDAMTLDI 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +++KGD+ SLSIAAASI+AKVTRD++M + +P YGF + GY T +H Q +K Sbjct: 179 AISQQSILKGDANSLSIAAASIVAKVTRDQMMANYDRIFPGYGFAKNAGYGTKEHLQELK 238 Query: 190 EKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 239 AYGITPIHRKSFEPVKSM 256 >gi|169833197|ref|YP_001694596.1| ribonuclease HII [Streptococcus pneumoniae Hungary19A-6] gi|238688296|sp|B1IBW1|RNH2_STRPI RecName: Full=Ribonuclease HII; Short=RNase HII gi|168995699|gb|ACA36311.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae Hungary19A-6] Length = 259 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGATPIHRTSFEPVKSLVL 254 >gi|229157413|ref|ZP_04285491.1| Ribonuclease [Bacillus cereus ATCC 4342] gi|228626140|gb|EEK82889.1| Ribonuclease [Bacillus cereus ATCC 4342] Length = 257 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 91/195 (46%), Positives = 129/195 (66%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + A+ I + S + ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKAQAVAIGVGIVSPRVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 ILEEHRKSFAPIKDM 254 >gi|256750728|ref|ZP_05491613.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1] gi|256750311|gb|EEU63330.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1] Length = 242 Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 114/196 (58%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AG+DE GRG L GPVV A +I + INDSKK+S +KRE L E Sbjct: 48 YENQLYQLNLNFIAGVDEAGRGPLVGPVVAACVIFPKDVFIPEINDSKKLSEEKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI S + IDK NI AT A+ A+ +Q L+D +IP+ Sbjct: 108 VIKKVAISYSFGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQI-EIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKMMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTFRPLRNLS 208 P IHR TF + + Sbjct: 227 PCPIHRKTF--IEKIL 240 >gi|52141651|ref|YP_085178.1| ribonuclease HII [Bacillus cereus E33L] gi|81686573|sp|Q636I9|RNH2_BACCZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|51975120|gb|AAU16670.1| ribonuclease HII (RNase HII) [Bacillus cereus E33L] Length = 257 Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVILPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P LID +P P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|332976611|gb|EGK13452.1| ribonuclease HII [Desmospora sp. 8437] Length = 264 Score = 197 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 118/195 (60%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + LE R + +AG+DE GRG LAGPVV AA+IL G+NDSKK+S ++RE L Sbjct: 61 WRLEREYRRQGYQAIAGVDEAGRGPLAGPVVAAAVILPLGFDATGLNDSKKLSPEERESL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A+ + I A H+YID+HNI +AT +A+ AV +L L+D +L Sbjct: 121 RVRIERDAVAVGIGVADHRYIDEHNILQATYEAMRRAVADLSPAADCLLLDAV-EVPELF 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++KGD++S SIAAAS+IAK RDR M A KKYP YGF+ ++GY T H ++ Sbjct: 180 LPQHPIVKGDALSHSIAAASVIAKTFRDRCMTAAGKKYPQYGFEKNMGYGTPDHLAALER 239 Query: 191 KGPSCIHRLTFRPLR 205 G IHR +F P+R Sbjct: 240 WGTCPIHRKSFAPVR 254 >gi|152976203|ref|YP_001375720.1| ribonuclease HII [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189043565|sp|A7GRG7|RNH2_BACCN RecName: Full=Ribonuclease HII; Short=RNase HII gi|152024955|gb|ABS22725.1| Ribonuclease H [Bacillus cytotoxicus NVH 391-98] Length = 259 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 91/195 (46%), Positives = 125/195 (64%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +R++ + +AGIDEVGRG LAGPVV AA+IL G+NDSKK+S KRE Y+ Sbjct: 62 YENALRKQGISYIAGIDEVGRGPLAGPVVTAAVILPEEFYIPGLNDSKKLSEAKRELFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P LID +P Sbjct: 122 EIREKAIAIGVGIVSPQVIDEMNIYQATKRAMLDAVANLSYAPEHLLIDAMKLPT--SIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +++KGD+ S+SI+AASIIAKVTRDR+M+ K YP+YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIVKGDAKSISISAASIIAKVTRDRMMKELGKTYPEYGFEKHMGYGTKQHLEAIETYG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 240 VLEEHRKTFAPIKDM 254 >gi|117923822|ref|YP_864439.1| RNase HII [Magnetococcus sp. MC-1] gi|189043692|sp|A0L4Z0|RNH2_MAGSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|117607578|gb|ABK43033.1| RNase HII [Magnetococcus sp. MC-1] Length = 213 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 92/205 (44%), Positives = 128/205 (62%), Gaps = 4/205 (1%) Query: 8 ERPHFELEAMVREKN--MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 P ELE + N + + G+DE GRG L GPVV AA++LD +N+P G+NDSK++S Sbjct: 7 PGPDLELECALLRSNRAIKTLCGVDEAGRGPLCGPVVAAAVVLDLDNLPVGLNDSKQLSA 66 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVE--NLQVIPRSALIDGR 123 KKRE+L+E+I ++ + + AS ID NI A++ A+ AV +++ ALIDG Sbjct: 67 KKREQLFEQIYVTSQVGVGEASVAEIDALNILHASMLAMVRAVTALQGRLVVDHALIDGN 126 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LP AV+KGD+ SLSIAAASIIAKVTRDR+M + YP YG+ GYPT Sbjct: 127 RVPATLPVPGQAVVKGDAKSLSIAAASIIAKVTRDRIMAELDRDYPHYGWAKSQGYPTQA 186 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H Q + G + HR +F+P++ L Sbjct: 187 HLQALALHGVTPHHRRSFKPVKQLL 211 >gi|321315372|ref|YP_004207659.1| ribonuclease HII [Bacillus subtilis BSn5] gi|320021646|gb|ADV96632.1| ribonuclease HII [Bacillus subtilis BSn5] Length = 255 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + R K +AG+DEVGRG LAGPVV +A+IL G+ DSKK+S KKREE Y Sbjct: 61 SYERLARNKGFRLMAGVDEVGRGPLAGPVVASAVILPEECEILGLTDSKKLSEKKREEYY 120 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A + I ID+ NI++A+ A+ A+++L P L+D ++P D Sbjct: 121 ELIMKEALAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSDTPDYLLVDAMTLPLDTA- 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAA+ IAKVTRDR+M + YP YGF+ + GY T +H + + Sbjct: 180 -QASIIKGDAKSVSIAAAACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAY 238 Query: 192 GPSCIHRLTFRPLRN 206 GP+ +HR TF P+++ Sbjct: 239 GPTELHRKTFAPVQS 253 >gi|330813681|ref|YP_004357920.1| ribonuclease HII [Candidatus Pelagibacter sp. IMCC9063] gi|327486776|gb|AEA81181.1| ribonuclease HII [Candidatus Pelagibacter sp. IMCC9063] Length = 199 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 80/199 (40%), Positives = 120/199 (60%), Gaps = 4/199 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +F+ E + + G+DEVGRG LAGPVV AA+IL+P+ INDSKKIS KKR Sbjct: 3 NFKRELQISNN----IIGVDEVGRGPLAGPVVAAAVILNPDICLKEINDSKKISKKKRNN 58 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ KI + + +I +S + I+K+NI +A+L A+ AV +L + + L+DG + Sbjct: 59 VFFKIINHSKFAIGFSSVEEIEKYNILQASLTAMKRAVTSLGTLKSTILVDGIHSFDKKN 118 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +KGD SIAAASI+AKV RD M I KKY YG++ + GY T++H +K+ Sbjct: 119 KKILTFVKGDEQFPSIAAASILAKVLRDNYMCILAKKYKGYGWEKNSGYGTSEHMGAMKK 178 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + +HR F P+ + + Sbjct: 179 FGLTPLHRKNFAPVHKMLL 197 >gi|312898597|ref|ZP_07757987.1| ribonuclease HII [Megasphaera micronuciformis F0359] gi|310620516|gb|EFQ04086.1| ribonuclease HII [Megasphaera micronuciformis F0359] Length = 266 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 127/197 (64%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + K +AGIDE GRG +AGPV +AA+IL + +G+NDSKK+SHK+REEL Sbjct: 63 LRYEEKLYAKGYRYIAGIDEAGRGPVAGPVTIAAVILPIRPLIYGLNDSKKVSHKRREEL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ I + AI +S + S ID+++I+ AT A+Y AV+ L + P++ LID DL Sbjct: 123 FDTIMNEAIAVSCINFSEADIDRYDIYHATQRAMYTAVKTLDISPQAVLIDAM-PLPDLE 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +++ GD+ S SIAAASIIAKVTRDR+M ++YP YGF H GY T H+ I + Sbjct: 182 IYHESIVGGDAQSQSIAAASIIAKVTRDRIMEEYDRQYPRYGFAEHKGYLTQTHKDAIAQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR +F P++++ Sbjct: 242 YGPCPIHRKSFEPVKSM 258 >gi|307706602|ref|ZP_07643409.1| ribonuclease HII [Streptococcus mitis SK321] gi|307618057|gb|EFN97217.1| ribonuclease HII [Streptococcus mitis SK321] Length = 259 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPDHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFTANAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|224541328|ref|ZP_03681867.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM 15897] gi|224525765|gb|EEF94870.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM 15897] Length = 211 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 6/196 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E R + G+DE GRG +AGP+VV +I + INDSKK++ KKRE L Sbjct: 7 LKYENEARAAGYSRILGVDEAGRGPMAGPLVVGGVIFPEDFYDERINDSKKLTEKKREAL 66 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I +A I S + +D N+++A+ + VE+L+ + Sbjct: 67 YDLIIENALAYQIEVLSVEEVDTLNVYEASRTGMKRIVESLEPDFTLSDA-----MPLGD 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S+SI AASI+AKVTRDR+M+ K+YP+YGF+ H GY T H++ +++ Sbjct: 122 IPHLSIIKGDAKSISIGAASILAKVTRDRIMKEYGKQYPEYGFEKHKGYVTKAHKEALEK 181 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR +F P++ Sbjct: 182 YGVTPIHRRSFAPVQK 197 >gi|326389492|ref|ZP_08211059.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200] gi|325994497|gb|EGD52922.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200] Length = 242 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 115/196 (58%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + N+ +AG+DE GRG L GP+V A +IL INDSKK+S +KRE L E Sbjct: 48 YENQLYQLNLNFIAGVDEAGRGPLVGPIVAACVILPKEVFIPEINDSKKLSEEKREVLSE 107 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI +I + IDK NI AT A+ A+ +Q L+D +IP+ Sbjct: 108 VIKKVAISYAIGIVDCEEIDKINILNATYKAMQIAISKIQQKIDYLLVDAITIPQI-EIN 166 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGDS S+SIAAASI+AKV RD++M+ HK YP Y F+ + GY T +H + +K+ G Sbjct: 167 QKAIVKGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKNKGYGTKEHIEALKKYG 226 Query: 193 PSCIHRLTFRPLRNLS 208 P IHR TF + + Sbjct: 227 PCPIHRKTF--IEKIL 240 >gi|228992565|ref|ZP_04152492.1| Ribonuclease HII [Bacillus pseudomycoides DSM 12442] gi|228767199|gb|EEM15835.1| Ribonuclease HII [Bacillus pseudomycoides DSM 12442] Length = 272 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 77 YEKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFYIPGLNDSKKLSEAKRERFYD 136 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 137 EIKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPT--PIP 194 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ K+YP YGF+ H+GY T +H Q I+ G Sbjct: 195 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYG 254 Query: 193 PSCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 255 VLEEHRKTFAPIKDM 269 >gi|149025509|ref|ZP_01836442.1| ribonuclease HII [Streptococcus pneumoniae SP23-BS72] gi|147929381|gb|EDK80378.1| ribonuclease HII [Streptococcus pneumoniae SP23-BS72] Length = 259 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 86/199 (43%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + + GIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + + I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQSLSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|294793773|ref|ZP_06758910.1| ribonuclease HII [Veillonella sp. 3_1_44] gi|294455343|gb|EFG23715.1| ribonuclease HII [Veillonella sp. 3_1_44] Length = 279 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 128/197 (64%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 77 YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 136 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S + ID+ NI++AT A+Y A+ L V + + D DL Sbjct: 137 YDIIMDEAVAVSCIFYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMK-LPDLR 195 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAAS+IAKVTRDR M+ +YP YGF H GY T H++ I++ Sbjct: 196 IPVESIIKGDSKSANIAAASVIAKVTRDRYMKSLDDEYPGYGFGIHKGYYTELHKEAIEQ 255 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 256 QGVTPLHRKSFEPIKSI 272 >gi|290580555|ref|YP_003484947.1| putative ribonuclease HII [Streptococcus mutans NN2025] gi|254997454|dbj|BAH88055.1| putative ribonuclease HII [Streptococcus mutans NN2025] Length = 260 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 82/199 (41%), Positives = 121/199 (60%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV A +IL N +NDSKKI KK EE+ Sbjct: 58 LRYEKDLYLQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKIRHLNDSKKIPKKKHEEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+++ A I I S + ID+ NI++AT A+ A+++ ++ R + ++ + Sbjct: 118 YKQVVKVALAIGIGRISSEMIDQVNIYEATKMAMLQAIDDLQGLVSRPDYLLIDAMNLGI 177 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SLSIAAASI+AKVTRDR+M + YP YGF +VGY T +H + ++ Sbjct: 178 SIPQSSIIKGDAHSLSIAAASIVAKVTRDRMMIGYDEIYPGYGFAQNVGYGTKQHLEGLE 237 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + IHR TF P++++ Sbjct: 238 TLGVTPIHRRTFEPIKSML 256 >gi|24379434|ref|NP_721389.1| ribonuclease HII [Streptococcus mutans UA159] gi|39932397|sp|Q8DUE1|RNH2_STRMU RecName: Full=Ribonuclease HII; Short=RNase HII gi|24377368|gb|AAN58695.1|AE014939_2 putative ribonuclease HII [Streptococcus mutans UA159] Length = 260 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 82/199 (41%), Positives = 121/199 (60%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV A +IL N +NDSKKI KK EE+ Sbjct: 58 LRYEKDLYLQGYQAIAGIDEVGRGPLAGPVVAACVILPKNCKIRHLNDSKKIPKKKHEEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+++ A I I S + ID+ NI++AT A+ A+++ ++ R + ++ + Sbjct: 118 YKQVVKVALAIGIGRISSEMIDQVNIYEATKMAMLQAIDDLQGLVSRPDYLLIDAMNLGI 177 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SLSIAAASI+AKVTRDR+M + YP YGF +VGY T +H + ++ Sbjct: 178 SIPQSSIIKGDAHSLSIAAASIVAKVTRDRMMIGYDEIYPGYGFAQNVGYGTKQHLEGLE 237 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + IHR TF P++++ Sbjct: 238 TLGVTPIHRRTFEPIKSML 256 >gi|189043613|sp|A5EEC1|RNH2_BRASB RecName: Full=Ribonuclease HII; Short=RNase HII Length = 289 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 125/196 (63%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P F E + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++R Sbjct: 61 PPSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQR 120 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L++KI ++ +++ AS ID+ NI +A+L A+ AV L P+ +DGR D Sbjct: 121 EALFDKICKTSAFAVAFASPARIDRDNILRASLWALSRAVRALPEAPKHVFVDGRD-RID 179 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + C AVI GD + +SIAAASI+AKVTRDRLM + P YGF+ H GY +H + Sbjct: 180 VDCHCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPEHLAAL 239 Query: 189 KEKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 240 DRLGPSVHHRSLFAPV 255 >gi|258645842|ref|ZP_05733311.1| ribonuclease HII [Dialister invisus DSM 15470] gi|260403214|gb|EEW96761.1| ribonuclease HII [Dialister invisus DSM 15470] Length = 256 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 91/197 (46%), Positives = 135/197 (68%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E+ +K + VAGIDEVGRG LAGPV VAA+IL P+ G+NDSKK++ ++REE+ Sbjct: 56 YEPESSFYKKGLEYVAGIDEVGRGPLAGPVTVAAVILKPHFFIAGLNDSKKVAPRRREEI 115 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +KI +A ISI S S + ID NI+ AT++A+Y AV NL++ P++ ++D ++P P Sbjct: 116 AKKIHETAVDISIVSLSPEEIDMRNIYAATMEAMYRAVRNLKIQPQAVIVD--AMPLHFP 173 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +++ GD+ S S+AAASI+AKV RD LM K YP YGF + GY TA+H + I+ Sbjct: 174 VPSLSLVHGDAKSASVAAASIVAKVHRDHLMDEYDKVYPGYGFSQNKGYGTAEHIEAIRT 233 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 234 LGITPIHRKSFEPVKSM 250 >gi|323466644|gb|ADX70331.1| Ribonuclease HII [Lactobacillus helveticus H10] Length = 250 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K VAG+DEVGRG LAGPVV AA+I+D N +NDSKK+S +KR +L Sbjct: 55 FSYEKQFWQKG-ELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRLQL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI S AI + I S ID+ NI++A A+ AV+ L V P + L+D ++P D Sbjct: 114 YPKILSEAISVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVD-- 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H +K+ Sbjct: 172 LPQIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDALKK 231 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR TF P+ + Sbjct: 232 YGPTPIHRKTFAPVSD 247 >gi|197119787|ref|YP_002140214.1| ribonuclease HII [Geobacter bemidjiensis Bem] gi|254807977|sp|B5EBC6|RNH2_GEOBB RecName: Full=Ribonuclease HII; Short=RNase HII gi|197089147|gb|ACH40418.1| ribonuclease HII [Geobacter bemidjiensis Bem] Length = 230 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 94/207 (45%), Positives = 119/207 (57%), Gaps = 4/207 (1%) Query: 2 FCNSIPERP--HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59 PE P LE + + +AGIDE GRG LAGPVV AA++L + G+ND Sbjct: 4 LFPDNPEAPIDLLALEGQALRRGYFRIAGIDEAGRGPLAGPVVAAAVMLPAGLLLPGVND 63 Query: 60 SKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SK+++ +KREEL++ I A + + H +D NI +ATL A+ AV L + P Sbjct: 64 SKQLTEEKREELFDVIHREALAVGVGIGDHALVDSINILQATLSAMRDAVRALSITPGFL 123 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 LIDG S + V KGDS+SLSIAAASIIAKVTRDR+M +YP YGF SH G Sbjct: 124 LIDGISNIP-MNIPQRTVKKGDSLSLSIAAASIIAKVTRDRMMVEYDAQYPGYGFASHKG 182 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLR 205 Y A H I E GP IHR TF ++ Sbjct: 183 YGAASHLAAIAELGPCPIHRKTFSGVK 209 >gi|148253836|ref|YP_001238421.1| ribonuclease HII [Bradyrhizobium sp. BTAi1] gi|146406009|gb|ABQ34515.1| RNase HII [Bradyrhizobium sp. BTAi1] Length = 292 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 125/196 (63%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P F E + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++R Sbjct: 64 PPSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQR 123 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L++KI ++ +++ AS ID+ NI +A+L A+ AV L P+ +DGR D Sbjct: 124 EALFDKICKTSAFAVAFASPARIDRDNILRASLWALSRAVRALPEAPKHVFVDGRD-RID 182 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + C AVI GD + +SIAAASI+AKVTRDRLM + P YGF+ H GY +H + Sbjct: 183 VDCHCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPEHLAAL 242 Query: 189 KEKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 243 DRLGPSVHHRSLFAPV 258 >gi|56698275|ref|YP_168648.1| ribonuclease HII [Ruegeria pomeroyi DSS-3] gi|81348925|sp|Q5LMW0|RNH2_SILPO RecName: Full=Ribonuclease HII; Short=RNase HII gi|56680012|gb|AAV96678.1| ribonuclease HII [Ruegeria pomeroyi DSS-3] Length = 234 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 92/200 (46%), Positives = 132/200 (66%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P ++LEA + + +AG+DEVGRG LAGPVV AA++LDP IP G+NDSKK++ +R Sbjct: 32 QPDYQLEAALAAQGHIRIAGVDEVGRGPLAGPVVAAAVVLDPGAIPEGLNDSKKLTAARR 91 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E LY+ + ++A +SI+ AS + ID NI +A+ A+ AV L P LIDG IP Sbjct: 92 ERLYDILHANAQVSIAEASVEEIDALNILRASHLAMERAVAALNPAPDFLLIDGNLIPAG 151 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L C A AVIKGD S+SIAAASI+AK RDRLM +++P YG++ + GYPT +H+ + Sbjct: 152 LSCPAEAVIKGDGRSVSIAAASIVAKTWRDRLMVDLAQQHPGYGWERNAGYPTKEHRSAL 211 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 + G + HR +F+ + + Sbjct: 212 QNLGVTPHHRRSFKTVHKIL 231 >gi|55820934|ref|YP_139376.1| ribonuclease HII [Streptococcus thermophilus LMG 18311] gi|55822856|ref|YP_141297.1| ribonuclease HII [Streptococcus thermophilus CNRZ1066] gi|81559468|sp|Q5M021|RNH2_STRT1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|81560665|sp|Q5M4N6|RNH2_STRT2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|55736919|gb|AAV60561.1| ribonuclease HII [Streptococcus thermophilus LMG 18311] gi|55738841|gb|AAV62482.1| ribonuclease HII [Streptococcus thermophilus CNRZ1066] Length = 260 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E +Y Sbjct: 65 YEKSLYARGIELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYN 124 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ A+ + I + ID NI++AT A+ A+E L P LID ++ DLP + Sbjct: 125 QVMKEAVAVGIGIKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLID--AMNLDLPIE 182 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T +H I + G Sbjct: 183 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFG 242 Query: 193 PSCIHRLTFRPLRNL 207 + IHR +F P++++ Sbjct: 243 VTPIHRRSFEPIKSI 257 >gi|116627722|ref|YP_820341.1| ribonuclease HII [Streptococcus thermophilus LMD-9] gi|122267681|sp|Q03KX7|RNH2_STRTD RecName: Full=Ribonuclease HII; Short=RNase HII gi|116100999|gb|ABJ66145.1| RNase HII [Streptococcus thermophilus LMD-9] Length = 255 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E +Y Sbjct: 60 YEKSLYARGIELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYN 119 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ A+ + I + ID NI++AT A+ A+E L P LID ++ DLP + Sbjct: 120 QVMKEAVAVGIGIKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLID--AMNLDLPIE 177 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T +H I + G Sbjct: 178 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFG 237 Query: 193 PSCIHRLTFRPLRNL 207 + IHR +F P++++ Sbjct: 238 VTPIHRRSFEPIKSI 252 >gi|322375250|ref|ZP_08049763.1| ribonuclease HII [Streptococcus sp. C300] gi|321279513|gb|EFX56553.1| ribonuclease HII [Streptococcus sp. C300] Length = 259 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGVALIAGVDEVGRGPLAGPVVAAAVILPKNCKINGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y + A I I +Q ID+ NI++AT A+ A+ L P LID + DL Sbjct: 118 YHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLSPQPDHLLIDAMKL--DLS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD LM+ ++YP Y F ++ GY TAKH + +++ Sbjct: 176 ISQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDQQYPGYDFTANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTPIHRTSFEPVKTL 252 >gi|325290406|ref|YP_004266587.1| RNase HII [Syntrophobotulus glycolicus DSM 8271] gi|324965807|gb|ADY56586.1| RNase HII [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 83/198 (41%), Positives = 121/198 (61%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 LE + ++ VAG+DE GRG LAGPV+ AA IL + +NDSKK++ ++RE+L Sbjct: 23 LYLERKLVKEGFMFVAGVDEAGRGPLAGPVIAAACILPESFDLPYLNDSKKLTARRREDL 82 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I A +++ + ID+ NI A+ A+ A+E L + P L+DGR D+ Sbjct: 83 FERIKDQASAYAVAGVEAEEIDRMNILHASKLAMKKAIEALHIPPGYVLVDGRDEI-DIV 141 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C+ AVI GD+ IAA SI+AKVTRDR+M H YP Y FD H GY T H +++++ Sbjct: 142 CRQKAVIGGDAKCACIAAGSILAKVTRDRIMDDLHMLYPQYAFDKHKGYGTRLHFELLQK 201 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR +F P++ L+ Sbjct: 202 YGPCPIHRYSFAPVKALA 219 >gi|300173225|ref|YP_003772391.1| ribonuclease HII [Leuconostoc gasicomitatum LMG 18811] gi|299887604|emb|CBL91572.1| ribonuclease HII [Leuconostoc gasicomitatum LMG 18811] Length = 254 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 120/196 (61%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E ++ + +AGIDEVGRG LAGPV+ AA+IL + + DSK++S KKRE L Sbjct: 59 FSFERHYWDQGVTYIAGIDEVGRGPLAGPVIAAAVILPSDFHHIDVIDSKQLSAKKREML 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I AI I + ID NI++A A+ AV++L P LID ++ D+P Sbjct: 119 YHIIIEQAISIGVGIVDAATIDDINIYQAAKLAMTKAVKDLAPEPEVLLID--AMSLDIP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD++S SI AASIIAKVTRDRLM YP YGF ++ GY T +H +K+ Sbjct: 177 ITQESLIKGDALSNSIGAASIIAKVTRDRLMTEYSVMYPGYGFANNAGYGTKEHLDGLKK 236 Query: 191 KGPSCIHRLTFRPLRN 206 +G + IHR +F+P+ + Sbjct: 237 RGITPIHRQSFQPVHD 252 >gi|332686610|ref|YP_004456384.1| ribonuclease HII [Melissococcus plutonius ATCC 35311] gi|332370619|dbj|BAK21575.1| ribonuclease HII [Melissococcus plutonius ATCC 35311] Length = 260 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 93/196 (47%), Positives = 128/196 (65%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E ++ +AGIDEVGRG LAGPVV AA+IL + F +NDSK++S K RE L+ Sbjct: 64 QFEKKAMQEGYQAIAGIDEVGRGPLAGPVVAAAVILPEDCQIFELNDSKQLSAKTRERLF 123 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A I I SH+ ID+ NI++AT A+ AV NLQ IP LID ++P Sbjct: 124 DEIGKKALAIGIGLVSHETIDEINIYQATKQAMIQAVANLQRIPDYLLIDAMTLPLTTI- 182 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ SLSIAAASI+AKVTRDRLM ++P YGF+ + GY T +H + +K++ Sbjct: 183 -QQSIIKGDARSLSIAAASIVAKVTRDRLMVHYAAEFPGYGFEKNAGYGTKEHLEGLKKQ 241 Query: 192 GPSCIHRLTFRPLRNL 207 G S IHR TF P++ + Sbjct: 242 GISPIHRKTFAPIKTM 257 >gi|315613173|ref|ZP_07888083.1| ribonuclease HII [Streptococcus sanguinis ATCC 49296] gi|315314735|gb|EFU62777.1| ribonuclease HII [Streptococcus sanguinis ATCC 49296] Length = 259 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y + A I I +Q ID+ NI++AT A+ A+ L P LID DL Sbjct: 118 YHAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLNPQPDHLLIDAMK--LDLS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD LM+ +YP Y F ++ GY TAKH + +++ Sbjct: 176 ISQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDNQYPGYDFTANAGYGTAKHLEELEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTPIHRTSFEPVKTL 252 >gi|306829522|ref|ZP_07462712.1| ribonuclease HII [Streptococcus mitis ATCC 6249] gi|304428608|gb|EFM31698.1| ribonuclease HII [Streptococcus mitis ATCC 6249] Length = 259 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 122/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKRGLTLIAGVDEVGRGPLAGPVVAAAVILPKNCKIRGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A I I +Q ID+ NI++AT A+ A+ L P LID + DL Sbjct: 118 YQAVQDQALAIGIGIMDNQVIDQVNIYEATKLAMKEAISQLTPQPEHLLIDAMKL--DLS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD LM ++YP Y F ++ GY TAKH + +++ Sbjct: 176 IYQTAIIKGDANSLSIAAASIVAKVTRDELMMEYDQQYPGYDFTANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTPIHRTSFEPVKTL 252 >gi|161507470|ref|YP_001577424.1| ribonuclease HII [Lactobacillus helveticus DPC 4571] gi|172048283|sp|A8YV45|RNH2_LACH4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|160348459|gb|ABX27133.1| ribonuclease HII [Lactobacillus helveticus DPC 4571] Length = 250 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 122/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K VAG+DEVGRG LAGPVV AA+I+D N +NDSKK+S +KR +L Sbjct: 55 FSYEKQFWQKG-ELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRLQL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI S A+ + I S ID+ NI++A A+ AV+ L V P + L+D ++P D Sbjct: 114 YPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVD-- 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H +K+ Sbjct: 172 LPQIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDALKK 231 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR TF P+ + Sbjct: 232 YGPTPIHRKTFAPVSD 247 >gi|228998613|ref|ZP_04158200.1| Ribonuclease HII [Bacillus mycoides Rock3-17] gi|228761081|gb|EEM10040.1| Ribonuclease HII [Bacillus mycoides Rock3-17] Length = 272 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 77 YEKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 136 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 137 EIKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPT--PIP 194 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ K+YP YGF+ H+GY T +H Q I+ G Sbjct: 195 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYG 254 Query: 193 PSCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 255 VLEEHRKTFAPIKDM 269 >gi|229006113|ref|ZP_04163801.1| Ribonuclease HII [Bacillus mycoides Rock1-4] gi|228755189|gb|EEM04546.1| Ribonuclease HII [Bacillus mycoides Rock1-4] Length = 257 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YEKALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EIKEQAIAIGVGIVSPQVIDEINIYQATKRAMLDAIANLACTPEHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ K+YP YGF+ H+GY T +H Q I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGKEYPAYGFEQHMGYGTKQHLQAIEMYG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 240 VLEEHRKTFAPIKDM 254 >gi|227890783|ref|ZP_04008588.1| ribonuclease HII [Lactobacillus salivarius ATCC 11741] gi|227867192|gb|EEJ74613.1| ribonuclease HII [Lactobacillus salivarius ATCC 11741] Length = 255 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 85/199 (42%), Positives = 132/199 (66%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++E + K + +AG+DEVGRG LAGPVV AA+IL + F +NDSK++S KKREEL Sbjct: 58 LKIERDLWNKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDIFEVNDSKQLSEKKREEL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+KI A+ +S+ + + ID+ NI++AT A+ A+E+L + P+ ++D ++ D Sbjct: 118 YKKILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVD--AMTIDTK 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S S+AAASI+AKVTRD LM+ + YP YGF+ + GY T +H + ++ Sbjct: 176 IPQLRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPGYGFEKNDGYGTKQHLEGLEN 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 KG + IHR +F P++ + + Sbjct: 236 KGVTPIHRQSFEPVKKILL 254 >gi|301300759|ref|ZP_07206943.1| ribonuclease HII [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851609|gb|EFK79309.1| ribonuclease HII [Lactobacillus salivarius ACS-116-V-Col5a] Length = 255 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 85/199 (42%), Positives = 133/199 (66%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++E + K + +AG+DEVGRG LAGPVV AA+IL + F +NDSK++S KKREEL Sbjct: 58 LKIERDLWNKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDIFEVNDSKQLSEKKREEL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+KI A+ +S+ + + ID+ NI++AT A+ A+E+L + P+ ++D ++ D Sbjct: 118 YKKILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVD--AMTIDTK 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S S+AAASI+AKVTRD LM+ + YP+YGF+ + GY T +H + ++ Sbjct: 176 IPQLRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPEYGFEKNDGYGTKQHLEGLEN 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 KG + IHR +F P++ + + Sbjct: 236 KGVTPIHRQSFEPVKKILL 254 >gi|259417130|ref|ZP_05741049.1| ribonuclease HII [Silicibacter sp. TrichCH4B] gi|259346036|gb|EEW57850.1| ribonuclease HII [Silicibacter sp. TrichCH4B] Length = 208 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 86/202 (42%), Positives = 128/202 (63%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 + P LE + + +AG+DEVGRG LAGPV AA++LD +P G+NDSKK++ + Sbjct: 4 MDTPDLSLEQVALSRGYTRIAGVDEVGRGPLAGPVTAAAVVLDLAALPEGLNDSKKLTPR 63 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +R L +I + A +++ AS + ID HNI +A+ A+ AV L P LIDG IP Sbjct: 64 RRAALEPEIMARASYAVAHASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDGNLIP 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 DL A AV+KGD SLSIAAASI+AK RDR+M +++P YG++ + GYP+ +H++ Sbjct: 124 RDLRIPAEAVVKGDGRSLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHRE 183 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 + + G + HR +F+P+ N+ Sbjct: 184 ALIKIGVTPHHRRSFKPVHNIL 205 >gi|257867805|ref|ZP_05647458.1| ribonuclease HII [Enterococcus casseliflavus EC30] gi|257874132|ref|ZP_05653785.1| ribonuclease HII [Enterococcus casseliflavus EC10] gi|257876697|ref|ZP_05656350.1| ribonuclease HII [Enterococcus casseliflavus EC20] gi|257801888|gb|EEV30791.1| ribonuclease HII [Enterococcus casseliflavus EC30] gi|257808296|gb|EEV37118.1| ribonuclease HII [Enterococcus casseliflavus EC10] gi|257810863|gb|EEV39683.1| ribonuclease HII [Enterococcus casseliflavus EC20] Length = 254 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 121/195 (62%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++ +AG+DEVGRG LAGPVV AA+IL G+NDSK++S KKREEL+ Sbjct: 60 RFENEAFQQGARFIAGLDEVGRGPLAGPVVSAAVILPKECQILGLNDSKQLSAKKREELF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ + I S + ID+ NI++A+ A+ A+ +L V P LID ++ D Sbjct: 120 IEIQNKAVAVGIGVVSPEEIDRINIYQASRLAMKEALIDLAVKPEYLLID--AMTIDTEI 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKV RD LM+ H+ YP YGFD + GY T H + + Sbjct: 178 PQQSLIKGDARSISIAAASIIAKVYRDNLMKDFHEVYPFYGFDQNAGYGTKVHLEGLAAH 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHR TF P++ Sbjct: 238 GICPIHRKTFAPVKQ 252 >gi|229031467|ref|ZP_04187467.1| Ribonuclease [Bacillus cereus AH1271] gi|228729756|gb|EEL80736.1| Ribonuclease [Bacillus cereus AH1271] Length = 257 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 128/196 (65%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y Sbjct: 61 RYEIALREKGLTLIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFY 120 Query: 73 EKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I + AI+ + S Q ID+ NI++AT A+ AV NL P LID +P P Sbjct: 121 DEIKAQAIVIGVGIVSPQIIDEINIYQATKQAMLDAVANLSCAPEYLLIDAMKLPT--PI 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ Sbjct: 179 PQTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEAH 238 Query: 192 GPSCIHRLTFRPLRNL 207 G HR +F P++++ Sbjct: 239 GVLEEHRKSFAPIKDM 254 >gi|76787278|ref|YP_329728.1| ribonuclease HII [Streptococcus agalactiae A909] gi|77406999|ref|ZP_00784013.1| ribonuclease HII [Streptococcus agalactiae H36B] gi|97189340|sp|Q3K175|RNH2_STRA1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|76562335|gb|ABA44919.1| ribonuclease HII [Streptococcus agalactiae A909] gi|77174385|gb|EAO77240.1| ribonuclease HII [Streptococcus agalactiae H36B] Length = 253 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 89/198 (44%), Positives = 124/198 (62%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +++ +AGIDEVGRG LAGPVV AA+IL PN +NDSKKI KK +E+ Sbjct: 58 LVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A + I Q ID NI++AT A+ AV +L V+P LID ++ DLP Sbjct: 118 YQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVVPEHLLID--AMVLDLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ SLSIAAASI+AKVTRD++M KYP Y F + GY T +H + +++ Sbjct: 176 IPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSKYPGYAFSKNAGYGTKEHLEGLQK 235 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + IHR +F P++++ Sbjct: 236 YGITPIHRKSFEPIKSML 253 >gi|225870570|ref|YP_002746517.1| ribonuclease HII [Streptococcus equi subsp. equi 4047] gi|225699974|emb|CAW93945.1| ribonuclease HII [Streptococcus equi subsp. equi 4047] Length = 257 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 79/200 (39%), Positives = 116/200 (58%), Gaps = 2/200 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 57 LTYEQALYQKGFQAIAGIDEVGRGPLAGPVVAACVILPKGCTIKGLNDSKKIPKAKHEAI 116 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ I A I + + ID+ NI++AT A+ A+ + + + ++ ++ Sbjct: 117 YQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMTAAINQLEGSVSKPDYLLIDAMTLEV 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD+ S+SIAAASI+AKVTRDRLM K +P YGF + GY T +H Q + Sbjct: 177 SIPQQAIIKGDASSMSIAAASIVAKVTRDRLMLDYDKAFPGYGFAKNAGYGTKEHLQGLH 236 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 + G + IHR +F P++++ + Sbjct: 237 QYGVTPIHRQSFEPIKSMIL 256 >gi|228476746|ref|ZP_04061412.1| ribonuclease HII [Streptococcus salivarius SK126] gi|228251617|gb|EEK10718.1| ribonuclease HII [Streptococcus salivarius SK126] Length = 255 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E + Sbjct: 58 LSYEKSLYTQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSKKIPKSKHEAI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + I + ID NI++AT A+ A+E L+ P LID ++ DLP Sbjct: 118 YKQVMKEAVAVGIGIKDNHVIDDVNIYEATKLAMVEAIEKLEPQPEHLLID--AMTLDLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T +H I + Sbjct: 176 IGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 236 FGVTPIHRRSFEPIKSI 252 >gi|317129225|ref|YP_004095507.1| ribonuclease H [Bacillus cellulosilyticus DSM 2522] gi|315474173|gb|ADU30776.1| Ribonuclease H [Bacillus cellulosilyticus DSM 2522] Length = 260 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 79/199 (39%), Positives = 120/199 (60%), Gaps = 4/199 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ + G+DEVGRG LAGPVV + +IL P G+ DSK++S +KREE Y Sbjct: 63 TYEEDLWKEGYHYIGGVDEVGRGPLAGPVVASCVILSPEFYLAGLTDSKQLSKQKREEFY 122 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I AI + I A+ + ID+ NI++AT A+ A+ L + P L+D +P Sbjct: 123 CNIMEEAISVGIGIATSEEIDQINIYEATKLAMKRAIHKLSIEPSYLLLDAMKLPIG--L 180 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAA+S+IAKVTRD M + YP+Y F ++GY T +H I++ Sbjct: 181 PQMSLIKGDTKSVSIAASSVIAKVTRDNYMEEIAQTYPEYRFQKNMGYGTKEHLHAIEQH 240 Query: 192 GPSCIHRLTFRPLR-NLSV 209 G + HR +F P++ +LS+ Sbjct: 241 GITKEHRRSFAPVKESLSL 259 >gi|225868570|ref|YP_002744518.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus] gi|225701846|emb|CAW99303.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus] Length = 257 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 79/200 (39%), Positives = 116/200 (58%), Gaps = 2/200 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGPVV A +IL G+NDSKKI K E + Sbjct: 57 LTYEQALYQKGFQAIAGIDEVGRGPLAGPVVAACVILPKGCTIKGLNDSKKIPKAKHEAI 116 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ I A I + + ID+ NI++AT A+ A+ + + + ++ ++ Sbjct: 117 YQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMIAAINQLKGSVSKPDYLLIDAMTLEV 176 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD+ S+SIAAASI+AKVTRDRLM K +P YGF + GY T +H Q + Sbjct: 177 SIPQQAIIKGDASSMSIAAASIVAKVTRDRLMLDYDKTFPGYGFAKNAGYGTKEHLQGLH 236 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 + G + IHR +F P++++ + Sbjct: 237 QYGVTPIHRQSFEPIKSMIL 256 >gi|259503396|ref|ZP_05746298.1| ribonuclease HII [Lactobacillus antri DSM 16041] gi|259168641|gb|EEW53136.1| ribonuclease HII [Lactobacillus antri DSM 16041] Length = 255 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 82/194 (42%), Positives = 113/194 (58%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + + VAG+DEVGRG LAGPVV A+IL P+ G+ DSK+++ +RE+L Sbjct: 60 FHYERQLWQNGCRYVAGMDEVGRGPLAGPVVTCAVILGPDFDLIGVTDSKQLTRHEREQL 119 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A +SI+ + ID+ NI+ AT DA+ AV NL P ++D +P D Sbjct: 120 YLRIVDEAVEVSIAVNDREAIDRLNIYAATQDAMMRAVRNLNHRPDHLIVDAVPLPFD-- 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD S+S+AAASI+AK RD LMR + YP YGF ++GY T H + Sbjct: 178 YPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDRVYPGYGFAENMGYGTKAHLAGLAR 237 Query: 191 KGPSCIHRLTFRPL 204 G IHR +F P+ Sbjct: 238 LGACPIHRRSFSPV 251 >gi|167769415|ref|ZP_02441468.1| hypothetical protein ANACOL_00745 [Anaerotruncus colihominis DSM 17241] gi|167668383|gb|EDS12513.1| hypothetical protein ANACOL_00745 [Anaerotruncus colihominis DSM 17241] Length = 200 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 115/199 (57%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E R + V G+DE GRG LAG V AA+IL P G+NDSKK+S K+RE L Sbjct: 4 YEFEQAARREGYAAVCGVDEAGRGPLAGDVYAAAVILPPGLELAGVNDSKKLSEKRREAL 63 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y IT A ++SAS + I++ NI +A+L A+ AVE L V AL+DG P Sbjct: 64 YGVITEQAAAWCVASASVEEIERLNILQASLLAMRRAVEGLGVRADFALVDGNRDPHFEG 123 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD S S+AAASI+AKVTRDR M +YP YGF+ H GY T H++ + + Sbjct: 124 VPCKTIVGGDGKSASVAAASILAKVTRDRYMEQLAARYPQYGFERHKGYGTQAHREALLK 183 Query: 191 KGPSCIHRLTFRPLRNLSV 209 GP HR F LR L + Sbjct: 184 YGPCPAHRKLF--LRRLGL 200 >gi|320546752|ref|ZP_08041063.1| ribonuclease HII [Streptococcus equinus ATCC 9812] gi|320448631|gb|EFW89363.1| ribonuclease HII [Streptococcus equinus ATCC 9812] Length = 259 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 81/199 (40%), Positives = 117/199 (58%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + GIDEVGRG LAGPVV A +IL N +NDSKKI K EE+ Sbjct: 58 LRYEKELYKQGYQAIGGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPKKHHEEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 YE++ + A + I + ID NI++AT + A+E + R + ++ D Sbjct: 118 YEEVLARALGVGIGVIDNNVIDDINIYEATKVGMLQAIEQLKGEVTRPDYLLIDAMHLDT 177 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SLSIAAASI+AKVTRDR+M K+YP Y F+ +VGY T H + +K Sbjct: 178 DIPQESLIKGDANSLSIAAASIVAKVTRDRMMADYAKEYPGYAFEKNVGYGTKDHLEGLK 237 Query: 190 EKGPSCIHRLTFRPLRNLS 208 + G + IHR TF P++++ Sbjct: 238 KLGITPIHRKTFEPIKSML 256 >gi|27377632|ref|NP_769161.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110] gi|39932385|sp|Q89S84|RNH2_BRAJA RecName: Full=Ribonuclease HII; Short=RNase HII gi|27350777|dbj|BAC47786.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110] Length = 261 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 95/201 (47%), Positives = 129/201 (64%), Gaps = 1/201 (0%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 + P + F E + ++ +WPVAG DE GRG LAGPVV AA+ILDP+ IP GI+DSK++ Sbjct: 22 EAAPVKASFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVILDPDRIPRGIDDSKRL 81 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + ++RE+L++KI ++A +S++ AS ID+ NI +A+L A+ AV L PR +DGR Sbjct: 82 TAEQREKLFDKICATAQVSVAVASPARIDRDNILRASLWALKRAVVALPEAPRHVFVDGR 141 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 D C AVI GD I LSIAAASI+AKVTRDRLM + P YGF+ H GY + Sbjct: 142 D-RLDTACDCEAVIGGDGIVLSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYGVPE 200 Query: 184 HQQVIKEKGPSCIHRLTFRPL 204 H + GP+ HR F P+ Sbjct: 201 HLDALNRLGPTVHHRSFFAPV 221 >gi|195978102|ref|YP_002123346.1| ribonuclease HII [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|259494073|sp|B4U2W6|RNH2_STREM RecName: Full=Ribonuclease HII; Short=RNase HII gi|195974807|gb|ACG62333.1| ribonuclease HII RnhB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 260 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 79/200 (39%), Positives = 118/200 (59%), Gaps = 2/200 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +K +AGIDEVGRG LAGP+V A +IL G+NDSKKI K E + Sbjct: 60 LTYEQALYQKGFQAIAGIDEVGRGPLAGPIVAACVILPKGCTIKGLNDSKKIPKAKHEAI 119 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDL 129 Y+ I A I + + ID+ NI++AT A+ A+ + + + ++ ++ Sbjct: 120 YQAIQKKALGIGLGIIDNHTIDRVNIYEATKLAMIAAINQLKGSVSKPDYLLIDAMTLEV 179 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P A+IKGD+ S+SIAAASI+AKVTRDRLM K +P YGF + GY T +H Q + Sbjct: 180 PIPQQAIIKGDASSMSIAAASIVAKVTRDRLMLDYDKAFPGYGFAKNAGYGTKEHLQGLH 239 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 + G + IHR +F P++++++ Sbjct: 240 QYGITPIHRQSFEPIKSMTL 259 >gi|15901021|ref|NP_345625.1| ribonuclease HII [Streptococcus pneumoniae TIGR4] gi|111658304|ref|ZP_01408994.1| hypothetical protein SpneT_02000533 [Streptococcus pneumoniae TIGR4] gi|32171703|sp|Q97QP5|RNH2_STRPN RecName: Full=Ribonuclease HII; Short=RNase HII gi|14972634|gb|AAK75265.1| ribonuclease HII [Streptococcus pneumoniae TIGR4] Length = 259 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILSKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD L++ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELLKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|260583825|ref|ZP_05851573.1| ribonuclease HII [Granulicatella elegans ATCC 700633] gi|260158451|gb|EEW93519.1| ribonuclease HII [Granulicatella elegans ATCC 700633] Length = 257 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 118/194 (60%), Gaps = 3/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + ++ +AG+DEVGRG LAGPVV AA+IL N G +DSKK+S KREE+Y Sbjct: 63 YEILAYQEGASFIAGVDEVGRGPLAGPVVAAAVILPKNIEDLGFDDSKKLSASKREEIYR 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI I I ID+ NI++A+ A+ AV L++ P LID I D+ Sbjct: 123 LIQEKAIAIGIGIVDADIIDQVNIYQASRLAMQQAVSELKIQPDYLLIDAMKI--DVNTP 180 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASI+AK RD++M+ + YP Y F ++ GY T KH + +K KG Sbjct: 181 QIGIIKGDAKSISIAAASIVAKQVRDQMMQEFDELYPGYDFSNNAGYGTPKHLEGLKSKG 240 Query: 193 PSCIHRLTFRPLRN 206 IHR TF P+++ Sbjct: 241 ICPIHRKTFAPIKD 254 >gi|146339063|ref|YP_001204111.1| ribonuclease HII [Bradyrhizobium sp. ORS278] gi|146191869|emb|CAL75874.1| Ribonuclease HII [Bradyrhizobium sp. ORS278] Length = 289 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE Sbjct: 62 PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 121 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++KI ++ +++ AS ID+ NI +A+L A+ AV L P+ +DGR D+ Sbjct: 122 ALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAVRALPEAPKHVFVDGRD-RIDV 180 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + +SIAAASI+AKVTRDRLM + P YGF+ H GY +H + Sbjct: 181 DCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD 240 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 241 RLGPSVHHRSLFAPV 255 >gi|323351561|ref|ZP_08087215.1| ribonuclease HII [Streptococcus sanguinis VMC66] gi|322122047|gb|EFX93773.1| ribonuclease HII [Streptococcus sanguinis VMC66] Length = 254 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYKTGFRAIAGIDEVGRGPLAGPVVAAAVILPPGCKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + I ++ ID+ NI++AT A+ A+ L + P LID + D+ Sbjct: 118 YQAVLDKALAVGIGLIDNEIIDQVNIYEATKLAMKDALSKLCLKPDYLLIDAMKL--DVE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM KK+P Y F + GY T +H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMTDYDKKFPGYDFSQNAGYGTMRHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 NGVTPIHRKTFEPIKSM 252 >gi|189043614|sp|A4YPP8|RNH2_BRASO RecName: Full=Ribonuclease HII; Short=RNase HII Length = 277 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + ++ +WPVAG DE GRG LAGPVV AA+ILDPN IP G++DSK++S ++RE Sbjct: 50 PSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQRE 109 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++KI ++ +++ AS ID+ NI +A+L A+ AV L P+ +DGR D+ Sbjct: 110 ALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAVRALPEAPKHVFVDGRD-RIDV 168 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD + +SIAAASI+AKVTRDRLM + P YGF+ H GY +H + Sbjct: 169 DCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD 228 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 229 RLGPSVHHRSLFAPV 243 >gi|319649582|ref|ZP_08003738.1| hypothetical protein HMPREF1013_00342 [Bacillus sp. 2_A_57_CT2] gi|317398744|gb|EFV79426.1| hypothetical protein HMPREF1013_00342 [Bacillus sp. 2_A_57_CT2] Length = 259 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 118/196 (60%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E R + +AGIDEVGRG LAGPVV AA+IL + G++DSKK+ KREE Sbjct: 61 QYEVRYRSQGFQFIAGIDEVGRGPLAGPVVAAAVILPEDFFLPGLDDSKKVPESKREEFS 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I + A S+ + ID+ NI +AT A+ A+E + P+ + ++ P Sbjct: 121 EIIKAKAAAFSVGIIDPEEIDRINIFEATKKAMLSAIE--GLSPKPDFLLADAVKLLTPY 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD S+SIAAASIIAKVTRDR+M K++P YGF+ ++GY T +H + I Sbjct: 179 PMEAIIKGDGKSISIAAASIIAKVTRDRMMAEIGKEFPQYGFEKNMGYGTKEHLEAITLH 238 Query: 192 GPSCIHRLTFRPLRNL 207 G S HR +F P++NL Sbjct: 239 GISPYHRKSFAPIKNL 254 >gi|307941608|ref|ZP_07656963.1| ribonuclease HII [Roseibium sp. TrichSKD4] gi|307775216|gb|EFO34422.1| ribonuclease HII [Roseibium sp. TrichSKD4] Length = 216 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 93/206 (45%), Positives = 125/206 (60%), Gaps = 1/206 (0%) Query: 1 MFCNSIPER-PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59 +F PE+ LE +AG+DE GRG AGPVV AA+ILD + +P G+ D Sbjct: 7 LFDLVFPEKEADPALERQHASHFGGLLAGVDEAGRGPWAGPVVTAAVILDYDKVPSGLTD 66 Query: 60 SKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 SKK+S KREEL+ +I A +S++SA + ID NI ATL+A+ AV L PR + Sbjct: 67 SKKLSEAKREELFPQICEHAFVSVASAGPKTIDLENIRTATLNAMVRAVSGLAFPPRYVM 126 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR +P L A++KGDS L++AAASI+AKV RDR+M + P+YGF H GY Sbjct: 127 IDGRDVPFGLSAPGQALVKGDSRCLAVAAASIVAKVMRDRMMVRLDQIAPEYGFAQHKGY 186 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLR 205 HQ + E GPS HR +F+P++ Sbjct: 187 GVPAHQAALSEHGPSIHHRFSFKPVQ 212 >gi|229019032|ref|ZP_04175873.1| Ribonuclease [Bacillus cereus AH1273] gi|229025278|ref|ZP_04181698.1| Ribonuclease [Bacillus cereus AH1272] gi|228736031|gb|EEL86606.1| Ribonuclease [Bacillus cereus AH1272] gi|228742272|gb|EEL92431.1| Ribonuclease [Bacillus cereus AH1273] Length = 255 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 125/195 (64%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L G+NDSKK+S KRE Y+ Sbjct: 62 YEHALREKGIMYIAGIDEVGRGPLAGPVVTAAVVLPEEFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P LID +P Sbjct: 122 EIKEHAIAIGVGIVSPQIIDEINIYQATKQAMLDAVANLSCTPEYLLIDAMKLPT--SIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KKYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGKKYPAYGFEQHMGYGTKQHLEAIESHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|228986980|ref|ZP_04147106.1| Ribonuclease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772758|gb|EEM21198.1| Ribonuclease [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 257 Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KR+ Y+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRDRFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKVQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H + I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLEAIEVHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 ILEEHRKSFAPIKDM 254 >gi|319403915|emb|CBI77503.1| Ribonuclease HII [Bartonella rochalimae ATCC BAA-1498] Length = 223 Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 105/207 (50%), Positives = 142/207 (68%), Gaps = 2/207 (0%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + +P +P+F E +++K + +AG+DEVGRG LAGPVV AA+ILD + IP G+NDS Sbjct: 10 LDMFDVPFQPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVILDKDRIPEGLNDS 69 Query: 61 KKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S ++R LY +I +A IS++S + IDK NI KATL+A+ H + L + AL Sbjct: 70 KKLSSQQRNRLYYEILRNALAISVASLCARTIDKSNIRKATLEAMRHCITGLAISAHYAL 129 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR IP DLPC A A+IKGD S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY Sbjct: 130 IDGRDIPFDLPCPAVALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRIYQNYGLEKHVGY 189 Query: 180 PTAKHQQVIKEKGP-SCIHRLTFRPLR 205 T H+ I + GP +HR +F PL+ Sbjct: 190 GTVAHRAAIDKYGPIVRLHRYSFSPLK 216 >gi|229086390|ref|ZP_04218566.1| Ribonuclease [Bacillus cereus Rock3-44] gi|228696906|gb|EEL49715.1| Ribonuclease [Bacillus cereus Rock3-44] Length = 255 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 91/195 (46%), Positives = 128/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YEKALREKGLAYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ A+ NL P LID +P P Sbjct: 122 EINAKAIAIGVGIISPQVIDEINIYQATKRAMLDAIANLSCTPEHLLIDAMKLPS--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +++KGD+ S+SI+AASIIAKVTRD +M+ K++P+YGF+ H+GY T +H Q I+ G Sbjct: 180 QTSIVKGDTKSISISAASIIAKVTRDCMMKELGKEHPEYGFEQHMGYGTKQHLQAIETYG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR TF P++++ Sbjct: 240 VLEEHRKTFAPIKDM 254 >gi|148989186|ref|ZP_01820576.1| ribonuclease HII [Streptococcus pneumoniae SP6-BS73] gi|147925409|gb|EDK76487.1| ribonuclease HII [Streptococcus pneumoniae SP6-BS73] Length = 259 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 85/199 (42%), Positives = 123/199 (61%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + + GIDEVGRG LAGPVV AA+IL N +NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIVGIDEVGRGPLAGPVVAAAVILPKNCKIKDLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + + I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQSLSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|301063461|ref|ZP_07203993.1| ribonuclease HII [delta proteobacterium NaphS2] gi|300442400|gb|EFK06633.1| ribonuclease HII [delta proteobacterium NaphS2] Length = 215 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 85/208 (40%), Positives = 119/208 (57%), Gaps = 4/208 (1%) Query: 1 MFCNSIPERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 +F N + + P F E R +AG+DE GRG LAGPVV AA+++ GI Sbjct: 9 LFPNDLSQCPQDPFYHETQARNSGYRLIAGVDEAGRGPLAGPVVAAAVMIPDGVRFSGIK 68 Query: 59 DSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSKK++ + R E + +I A I S YI++ NI A+L+A+ AV+ L P Sbjct: 69 DSKKMTVRARIEAFHRIEGGALTFGIGVVSVSYIEEFNILNASLEAMLRAVQVLDPQPEM 128 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 L+DG + + KGD +S SI+AAS++AKV RDR+M H YP+YGFD + Sbjct: 129 ILVDGIHTVP-TSIKQKCLKKGDQVSRSISAASVLAKVYRDRIMAAYHHMYPEYGFDKNK 187 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 GY T +H + IKE GP +HRLTF+ +R Sbjct: 188 GYGTRQHLEAIKEHGPCPVHRLTFKGVR 215 >gi|293374717|ref|ZP_06621025.1| ribonuclease HII [Turicibacter sanguinis PC909] gi|325840606|ref|ZP_08167087.1| ribonuclease HII [Turicibacter sp. HGF1] gi|292646631|gb|EFF64633.1| ribonuclease HII [Turicibacter sanguinis PC909] gi|325490255|gb|EGC92588.1| ribonuclease HII [Turicibacter sp. HGF1] Length = 257 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 90/194 (46%), Positives = 122/194 (62%), Gaps = 2/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +R + +AG+DEVGRG LAGPV+ AA+IL + FGI+DSKK+S KR YE Sbjct: 62 YENELRYSGIELIAGVDEVGRGPLAGPVIAAAVILPADCWLFGIDDSKKLSESKRLYFYE 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I +AI I I + + ID++NI++AT A+ AV L P+ L+D S+P Sbjct: 122 QIKKNAISIGIGICTSEEIDQYNIYEATKIAMERAVSKLNPKPQHLLLDAMSLPRL-DIP 180 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGDS S+SIAAASIIAKVTRD M+ YP YGF+ HVGY T +H I++ G Sbjct: 181 QTSIIKGDSKSVSIAAASIIAKVTRDAYMKKLGSAYPQYGFERHVGYGTKEHLLAIEQHG 240 Query: 193 PSCIHRLTFRPLRN 206 HR +F P+R+ Sbjct: 241 IISEHRKSFEPIRS 254 >gi|332073501|gb|EGI83980.1| ribonuclease HII [Streptococcus pneumoniae GA17570] Length = 260 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++ Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|225856834|ref|YP_002738345.1| ribonuclease HII [Streptococcus pneumoniae P1031] gi|254807993|sp|C1CKQ7|RNH2_STRZP RecName: Full=Ribonuclease HII; Short=RNase HII gi|225725074|gb|ACO20926.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae P1031] Length = 259 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++ Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|225858944|ref|YP_002740454.1| ribonuclease HII [Streptococcus pneumoniae 70585] gi|254807989|sp|C1C7C8|RNH2_STRP7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|225721844|gb|ACO17698.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae 70585] Length = 259 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++ Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|148994505|ref|ZP_01823685.1| ribonuclease HII [Streptococcus pneumoniae SP9-BS68] gi|168483218|ref|ZP_02708170.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1873-00] gi|168488985|ref|ZP_02713184.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae SP195] gi|147927175|gb|EDK78211.1| ribonuclease HII [Streptococcus pneumoniae SP9-BS68] gi|172043371|gb|EDT51417.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae CDC1873-00] gi|183572489|gb|EDT93017.1| ribonuclease HII (RNase HII) [Streptococcus pneumoniae SP195] gi|332201627|gb|EGJ15697.1| ribonuclease HII [Streptococcus pneumoniae GA47368] Length = 259 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++ Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFSGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|325570947|ref|ZP_08146566.1| ribonuclease HII [Enterococcus casseliflavus ATCC 12755] gi|325156273|gb|EGC68457.1| ribonuclease HII [Enterococcus casseliflavus ATCC 12755] Length = 254 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++ +AG+DEVGRG LAGPVV AA+IL G+NDSK++S KKREEL+ Sbjct: 60 RFENEAFQQGARFIAGLDEVGRGPLAGPVVSAAVILPKECQILGLNDSKQLSAKKREELF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ + I S + ID+ NI++A+ A+ A+ +L V P LID +I D Sbjct: 120 IEIQNKAVAVGIGVVSPEEIDRINIYQASRLAMKEALIDLAVKPEHLLIDAMTIETD--I 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKV RD LM+ H YP YGFD + GY T H + + Sbjct: 178 PQQSLIKGDARSISIAAASIIAKVYRDNLMKDFHDVYPFYGFDQNAGYGTKVHLEGLAAH 237 Query: 192 GPSCIHRLTFRPLRN 206 G IHR TF P++ Sbjct: 238 GICPIHRKTFAPVKQ 252 >gi|229162773|ref|ZP_04290730.1| Ribonuclease HII [Bacillus cereus R309803] gi|228620655|gb|EEK77524.1| Ribonuclease HII [Bacillus cereus R309803] Length = 257 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L + G+NDSKK+S KRE Y+ Sbjct: 62 YENALREKGLAYIAGIDEVGRGPLAGPVVTAAVVLPEDFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID +P P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ KYP YGF+ H+GY T +H + I G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGGKYPAYGFEQHMGYGTKQHLEAIAAHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++++ Sbjct: 240 VLEEHRKSFAPIKDM 254 >gi|331266372|ref|YP_004326002.1| ribonuclease HII [Streptococcus oralis Uo5] gi|326683044|emb|CBZ00661.1| ribonuclease HII [Streptococcus oralis Uo5] Length = 259 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLSLIAGVDEVGRGPLAGPVVAAAVILPKKCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y + A I I ++ ID+ NI++AT A+ A+ L P LID + +LP Sbjct: 118 YHAVQDQALAIGIGIMDNEVIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAMKL--ELP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD LM+ +YP Y F ++ GY TAKH + +++ Sbjct: 176 ILQTAIIKGDANSLSIAAASIVAKVTRDELMKEYDNQYPGYDFTANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTPIHRTSFEPVKTL 252 >gi|315122464|ref|YP_004062953.1| ribonuclease HII [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495866|gb|ADR52465.1| ribonuclease HII [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 209 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 158/200 (79%), Positives = 181/200 (90%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+P+FE E MVR+K MWPVAGIDEVGRGALAG VVVAAIILDPNNIP GINDSKKI KK Sbjct: 8 EKPNFEFEIMVRQKKMWPVAGIDEVGRGALAGSVVVAAIILDPNNIPPGINDSKKIPPKK 67 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 RE LYEKI +SAI+SI+SA ++YID+HNIHKATLD +Y A+ NL++ PRS LIDGRSIPE Sbjct: 68 REYLYEKIINSAIVSIASAGNRYIDQHNIHKATLDTMYRAINNLKITPRSVLIDGRSIPE 127 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 +LPCQAFA+IKGDS SLSIAAASI+AKVTRDRLM++AHKKYPDYGFDSHVGYPT KH+Q Sbjct: 128 NLPCQAFAIIKGDSSSLSIAAASIVAKVTRDRLMKMAHKKYPDYGFDSHVGYPTVKHRQA 187 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 IKEKGPS IHR++FRPL++L Sbjct: 188 IKEKGPSRIHRMSFRPLKDL 207 >gi|322373051|ref|ZP_08047587.1| ribonuclease HII [Streptococcus sp. C150] gi|321278093|gb|EFX55162.1| ribonuclease HII [Streptococcus sp. C150] Length = 260 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E + Sbjct: 63 LSYEKSLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAI 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + I + ID NI++AT A+ A+E L P LID ++ DLP Sbjct: 123 YKQVMKEAVAVGIGIKDNHVIDDVNIYEATKLAMAEAIEKLSPKPEHLLID--AMSLDLP 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y FD + GY T H I + Sbjct: 181 IGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFDQNAGYGTKNHLSGIDK 240 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 241 FGVTPIHRRSFEPIKSI 257 >gi|20807898|ref|NP_623069.1| ribonuclease HII [Thermoanaerobacter tengcongensis MB4] gi|39932431|sp|Q8R9X9|RNH2_THETN RecName: Full=Ribonuclease HII; Short=RNase HII gi|20516465|gb|AAM24673.1| Ribonuclease HII [Thermoanaerobacter tengcongensis MB4] Length = 241 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 114/196 (58%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + E+ + +AG+DE GRG L GPVV A +IL INDSKK+ +KRE+L E Sbjct: 47 YEKKLYEEGLNFIAGVDEAGRGPLVGPVVAACVILPKEIFIPEINDSKKLPEEKREKLAE 106 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI I + ID+ NI ATL A+ A+ ++ L+D S D+P + Sbjct: 107 VIKKEAISYGIGIVDCREIDEINILNATLKAMKKAIFEVKEKIEYLLVDAIS-IPDMPIK 165 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGDS S+SIAAASI+AKV RDR+MR HK YP Y F + GY T +H + +K+ G Sbjct: 166 QLPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKGYGTKEHIEALKKYG 225 Query: 193 PSCIHRLTFRPLRNLS 208 P IHR T+ + + Sbjct: 226 PCPIHRRTY--VEKIL 239 >gi|189043612|sp|B1MZ17|RNH2_LEUCK RecName: Full=Ribonuclease HII; Short=RNase HII Length = 260 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 117/196 (59%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E K + VAG+DEVGRG LAGPVV AA+IL + + DSK+++ KRE+L Sbjct: 59 FNFERDYWLKGVELVAGVDEVGRGPLAGPVVAAAVILPHDFNIVDVIDSKQVAQHKREQL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE I A+ I I S + ID+ NI++A A+ A+ NL P++ LID ++ L Sbjct: 119 YEIILDQAVSIGIGSVDAKTIDEINIYEAARQAMTEAINNLAPQPQALLID--AMQVYLD 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S SI AASI+AKV RD++M K YP Y F + GY T KH I + Sbjct: 177 ITQQSLIKGDARSNSIGAASIVAKVIRDKMMTDYDKVYPGYDFAQNAGYGTKKHLAGIDK 236 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR +F+P+ + Sbjct: 237 LGVTPIHRRSFQPVHD 252 >gi|170017294|ref|YP_001728213.1| ribonuclease HII [Leuconostoc citreum KM20] gi|169804151|gb|ACA82769.1| Ribonuclease HII [Leuconostoc citreum KM20] Length = 266 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 117/196 (59%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E K + VAG+DEVGRG LAGPVV AA+IL + + DSK+++ KRE+L Sbjct: 65 FNFERDYWLKGVELVAGVDEVGRGPLAGPVVAAAVILPHDFNIVDVIDSKQVAQHKREQL 124 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE I A+ I I S + ID+ NI++A A+ A+ NL P++ LID ++ L Sbjct: 125 YEIILDQAVSIGIGSVDAKTIDEINIYEAARQAMTEAINNLAPQPQALLID--AMQVYLD 182 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S SI AASI+AKV RD++M K YP Y F + GY T KH I + Sbjct: 183 ITQQSLIKGDARSNSIGAASIVAKVIRDKMMTDYDKVYPGYDFAQNAGYGTKKHLAGIDK 242 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR +F+P+ + Sbjct: 243 LGVTPIHRRSFQPVHD 258 >gi|258514489|ref|YP_003190711.1| ribonuclease HII [Desulfotomaculum acetoxidans DSM 771] gi|257778194|gb|ACV62088.1| Ribonuclease H [Desulfotomaculum acetoxidans DSM 771] Length = 268 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 127/196 (64%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E+ R K +AG+DE GRG LAGPVV AA+IL N G+NDSKK+ RE L Sbjct: 62 YEQESKYRSKGFGLIAGVDEAGRGPLAGPVVAAAVILPENACLPGLNDSKKLPVSARERL 121 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A ++ AS + I + NI +A+L A+ +V++L+V P L+DG +LP Sbjct: 122 FVAIKPIALSWAVGMASVEEICELNILQASLLAMCRSVDSLKVKPDFVLVDG-PNGLNLP 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++++KGD++S SIA+ASI+AKVTRD++M H ++P+YGFD H GYPT +H + + Sbjct: 181 LPQYSLVKGDTLSASIASASILAKVTRDKIMLEYHDEFPEYGFDRHKGYPTVEHLRALTR 240 Query: 191 KGPSCIHRLTFRPLRN 206 GP IHR F+P+++ Sbjct: 241 YGPCRIHRRDFKPVKD 256 >gi|298245602|ref|ZP_06969408.1| Ribonuclease H [Ktedonobacter racemifer DSM 44963] gi|297553083|gb|EFH86948.1| Ribonuclease H [Ktedonobacter racemifer DSM 44963] Length = 223 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 113/207 (54%), Gaps = 9/207 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-------GINDSKK 62 P E + E+ +AG+DE GRG LAGPVV AA+IL + P G+NDSK+ Sbjct: 9 PTLTEEMALFEQGYCFIAGLDEAGRGCLAGPVVAAAVILPLESNPTPVLARFTGVNDSKQ 68 Query: 63 ISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ RE LY+ I A + + S + ID+ NI +AT AL+ Sbjct: 69 LNEATRERLYDVIMEHALAVGVGIGSVELIDQRNILQAT-LQSMRVALTQLTPTAQALLL 127 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 D+P ++ KGDS LSIAAASIIAKVTRDRLM H+++P YGF H GY T Sbjct: 128 DAVRLRDIPLPQLSLTKGDSRCLSIAAASIIAKVTRDRLMHQLHEEFPRYGFKQHKGYGT 187 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLS 208 +H + +K+ G + HR +F P+R + Sbjct: 188 PEHLEALKQFGVTPHHRRSFSPIREML 214 >gi|121601736|ref|YP_988707.1| ribonuclease HII [Bartonella bacilliformis KC583] gi|166225170|sp|A1URV4|RNH2_BARBK RecName: Full=Ribonuclease HII; Short=RNase HII gi|120613913|gb|ABM44514.1| ribonuclease HII [Bartonella bacilliformis KC583] Length = 222 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 100/208 (48%), Positives = 136/208 (65%), Gaps = 2/208 (0%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + + +P +P+F E ++ + + +AG+DEVGRG LAGPVV AA+IL ++ G+NDS Sbjct: 9 LNMSDLPPQPNFSYELDLQNQGFFHIAGVDEVGRGPLAGPVVTAAVILSKDHSLDGLNDS 68 Query: 61 KKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S +KR LY +I SA ISI+S + ID+ +I KATL+A+ V L V AL Sbjct: 69 KKLSVQKRNRLYCEILQSALAISIASICARAIDQSDIRKATLEAMRRCVMGLAVPAHYAL 128 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR IP LPC A A++KGD S+SIAAASI+AKVTRDR+M A + Y YG + HVGY Sbjct: 129 IDGRDIPPHLPCPAKALVKGDQRSVSIAAASIVAKVTRDRMMEHAGQVYQGYGLEKHVGY 188 Query: 180 PTAKHQQVIKEKGPSC-IHRLTFRPLRN 206 T H+ I E GP +HR +F ++ Sbjct: 189 ATVAHRAAIAEYGPVIGLHRYSFALIKR 216 >gi|300024383|ref|YP_003756994.1| ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] gi|299526204|gb|ADJ24673.1| Ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] Length = 231 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 95/198 (47%), Positives = 121/198 (61%), Gaps = 1/198 (0%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 +P FELEA + P+AG+DE GRG AGPVV AA+ILDP+ IP I+DSK + Sbjct: 8 IKPTFELEAAEHQLGSRPIAGVDEAGRGPWAGPVVAAAVILDPDKIPANIDDSKTLDEDS 67 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R LY +I AI+ + A ID+ NI ATL A+ AV L P+ L+DG P Sbjct: 68 RAFLYRRIMKVAIVGVGIADVDRIDRENILGATLWAMAEAVSQLGETPKLVLVDGDKTPR 127 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 A++KGDS LSIAAASI+AKVTRDRLM + YP YGF+ H GY T +HQ Sbjct: 128 IPM-SVRAIVKGDSKCLSIAAASIVAKVTRDRLMMDFARAYPGYGFERHKGYGTPEHQAA 186 Query: 188 IKEKGPSCIHRLTFRPLR 205 I + G S +HR +FRP++ Sbjct: 187 IAKLGVSALHRRSFRPVQ 204 >gi|312862697|ref|ZP_07722937.1| ribonuclease HII [Streptococcus vestibularis F0396] gi|311101557|gb|EFQ59760.1| ribonuclease HII [Streptococcus vestibularis F0396] Length = 256 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E ++ + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E + Sbjct: 58 LSYEKVLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSKKIPKSKHEAI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + + + ID NI++AT A+ A+ENL P LID ++ DLP Sbjct: 118 YKQVMKEAVAVGVGIKDNHVIDDVNIYEATKLAMAEAIENLSPKPEHLLID--AMTLDLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T H + + Sbjct: 176 IGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFAKNAGYGTKDHLTGLDK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 236 FGVTPIHRRSFEPIKSI 252 >gi|154483562|ref|ZP_02026010.1| hypothetical protein EUBVEN_01266 [Eubacterium ventriosum ATCC 27560] gi|149735472|gb|EDM51358.1| hypothetical protein EUBVEN_01266 [Eubacterium ventriosum ATCC 27560] Length = 251 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 117/195 (60%), Gaps = 6/195 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + + GIDEVGRG LAGPVV A+IL N INDSKK+S KKREELY Sbjct: 60 EFERKY--SDYEFICGIDEVGRGPLAGPVVAGAVILPKNCDILYINDSKKLSAKKREELY 117 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A + S + ID+ NI +AT +A+ A+ L+ + L++ +P Sbjct: 118 EVIMEKAVCAKTAVVSPKVIDEINILQATYEAMRQAISMLEP-QPTLLLNDAVNIPGVPM 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++IKGD+ S+SI AASIIAKVTRD +M K YP+Y F S+ GY +AKH + +K+ Sbjct: 177 KQVSIIKGDAKSISIGAASIIAKVTRDAMMVEYDKIYPEYDFASNKGYGSAKHIEALKKY 236 Query: 192 GPSCIHRLTFRPLRN 206 GP IHR +F + N Sbjct: 237 GPCPIHRKSF--IHN 249 >gi|144899371|emb|CAM76235.1| Ribonuclease HII [Magnetospirillum gryphiswaldense MSR-1] Length = 201 Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats. Identities = 95/204 (46%), Positives = 120/204 (58%), Gaps = 9/204 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISH 65 P LE + VAGIDEVGRG LAGPVV AAII+DP +P + +DSKK+S Sbjct: 2 PDLSLETALG----GMVAGIDEVGRGPLAGPVVAAAIIIDPATLPAELAAHLDDSKKLSA 57 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KKRE L I +I+ AS + ID+ NI KAT A+ AV+ L +P AL+DG Sbjct: 58 KKREHLDILIRQHCRFAIAQASVEEIDRLNILKATFLAMARAVDGLGTVPDHALVDGNRP 117 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P C A VI GD+ SLSIAAASIIAKV RDRLM +P YG+ ++ GY T H Sbjct: 118 PPLP-CPAHCVIGGDAKSLSIAAASIIAKVFRDRLMTALDLDFPGYGWAANAGYGTKAHM 176 Query: 186 QVIKEKGPSCIHRLTFRPLRNLSV 209 + +K GP+ HR +F P+ + Sbjct: 177 EALKRLGPTPHHRTSFAPVAQFQL 200 >gi|146297153|ref|YP_001180924.1| ribonuclease H [Caldicellulosiruptor saccharolyticus DSM 8903] gi|189043571|sp|A4XLE8|RNH2_CALS8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|145410729|gb|ABP67733.1| RNase HII [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 205 Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 125/198 (63%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FELE + ++ + G+DE GRG LAGPV AA+I+D I G+ DSKK++ KKRE+L Sbjct: 10 FELEENLLKEGYRFICGVDEAGRGPLAGPVFAAAVIMDREIIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +I S++ ++ ID+ NI+ AT A+ +A+E L+++P L+DG DL Sbjct: 70 FEEIVKESITYSVAMVDNKTIDEININNATFLAMKNAIEALELVPDIVLVDG-YEIPDLN 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + YP Y F+ H GY T +H ++I E Sbjct: 129 LPQKALIKGDRKSYSIACASILAKVSRDRFITQISSLYPVYKFEKHKGYGTKEHIRLILE 188 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR +F L+N+ Sbjct: 189 YGPCEIHRKSF--LKNIL 204 >gi|125718010|ref|YP_001035143.1| ribonuclease HII [Streptococcus sanguinis SK36] gi|166226664|sp|A3CN38|RNH2_STRSV RecName: Full=Ribonuclease HII; Short=RNase HII gi|125497927|gb|ABN44593.1| Ribonuclease HII, putative [Streptococcus sanguinis SK36] Length = 254 Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +E+ Sbjct: 58 LRYEKELYKADYQAIAGIDEVGRGPLAGPVVAAAVILPPECKIKGLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + + +++ ID+ NI++AT A+ A+ L + P LID + D Sbjct: 118 YQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLDVD-- 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM KK+P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKKFPGYDFAKNAGYGTRSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 SGVTPIHRKTFEPIKSM 252 >gi|326794449|ref|YP_004312269.1| ribonuclease H [Marinomonas mediterranea MMB-1] gi|326545213|gb|ADZ90433.1| Ribonuclease H [Marinomonas mediterranea MMB-1] Length = 203 Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats. Identities = 97/183 (53%), Positives = 122/183 (66%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DE GRG LAG VV AA+ILDP+ G+NDSKK+S KKRE LY +I A SI Sbjct: 16 LVAGVDEAGRGPLAGDVVAAAVILDPDLTIDGLNDSKKLSEKKRERLYSQIIEKALSFSI 75 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + AS ID+ NI A++ A+ AV +L V ALIDG IP DL C A AV+KGD+ Sbjct: 76 ARASVAEIDELNILHASMLAMTRAVNSLPVPAEHALIDGNRIPLDLKCPAEAVVKGDARH 135 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKVTRDR + + +KYP+Y F+ H GYPTA H IK+ G IHR +F P Sbjct: 136 QAIAAASILAKVTRDREIVLMAEKYPEYAFEKHKGYPTAVHLDAIKQHGVCEIHRTSFGP 195 Query: 204 LRN 206 ++ Sbjct: 196 VKR 198 >gi|225180946|ref|ZP_03734394.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1] gi|225168427|gb|EEG77230.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1] Length = 260 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 95/191 (49%), Positives = 119/191 (62%), Gaps = 2/191 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +LE REK +AG+DE GRG LAGPVV A+IL N G+NDSKK++ +KREEL Sbjct: 64 LKLERAAREKGFTYIAGVDEAGRGPLAGPVVAGAVILPDNFFLAGLNDSKKLTPQKREEL 123 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE ITS A+ S+ ID NI +A+ A+Y A+ L V P AL+D + E Sbjct: 124 YEAITSEAVAWSVGIGEVWEIDDINILQASKLAMYRALLTLSVKPDYALLDALELEELPF 183 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 V+ GD +SLSIAAAS++AKVTRDRLM K YP YGF H GYPTA+H+ I + Sbjct: 184 A-QQGVVGGDGLSLSIAAASVVAKVTRDRLMCEQEKMYPGYGFSLHKGYPTAEHRSAIAK 242 Query: 191 KGPSCIHRLTF 201 GP IHR +F Sbjct: 243 LGPCPIHRKSF 253 >gi|322391939|ref|ZP_08065403.1| ribonuclease HII [Streptococcus peroris ATCC 700780] gi|321145165|gb|EFX40562.1| ribonuclease HII [Streptococcus peroris ATCC 700780] Length = 262 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 122/196 (62%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AG+DEVGRG LAGPVV AA+IL G+NDSK+I KK E+ Sbjct: 58 LSYEKELYAQGLNLIAGVDEVGRGPLAGPVVAAAVILPKKCKIKGLNDSKQIPKKKHREV 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + +A I I + ID+ NI++AT A+ A+ L+ P LID + DLP Sbjct: 118 FQAVKDNALAIGIGIMDNHIIDQVNIYEATKLAMKEAISQLESQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM +++P Y F+ + GY TAKH + IK+ Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDDLMVTYGQQFPGYDFEHNAGYGTAKHLEGIKQ 235 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR +F P+++ Sbjct: 236 YGITSIHRRSFEPIKS 251 >gi|312278270|gb|ADQ62927.1| Ribonuclease HII [Streptococcus thermophilus ND03] Length = 255 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E +Y Sbjct: 60 YEKSLCARGIELIAGVDEVGRGPLAGPVVAAAVILPKLCKIKGLNDSKKIPKSKHEAIYN 119 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ A+ + I + ID NI++AT A+ A+E L P LID ++ DLP + Sbjct: 120 QVMKEAVAVGIGIKDNYVIDDVNIYEATKLAMIEAIEKLNPQPEHLLID--AMNLDLPIE 177 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T +H I + G Sbjct: 178 QTSIIKGDANSLSIAAASIVAKVTRDKMMADYEQEFPGYAFAKNAGYGTKEHLSGIDKFG 237 Query: 193 PSCIHRLTFRPLRNL 207 + IHR +F P++++ Sbjct: 238 VTPIHRRSFEPIKSI 252 >gi|300361596|ref|ZP_07057773.1| ribonuclease H [Lactobacillus gasseri JV-V03] gi|300354215|gb|EFJ70086.1| ribonuclease H [Lactobacillus gasseri JV-V03] Length = 250 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 124/194 (63%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +KN VAG+DEVGRG LAGPVV AA+IL N +NDSKK+S KKR+ L Sbjct: 55 FSYEKEFWQKN-QLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKAL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + +I + A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++ L Sbjct: 114 FPQILAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPAALLVD--AMNVPLN 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ Sbjct: 172 IPQIKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALKK 231 Query: 191 KGPSCIHRLTFRPL 204 GP+ IHR +F P+ Sbjct: 232 YGPTPIHRRSFAPV 245 >gi|154251159|ref|YP_001411983.1| ribonuclease H [Parvibaculum lavamentivorans DS-1] gi|189043635|sp|A7HQZ3|RNH2_PARL1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|154155109|gb|ABS62326.1| Ribonuclease H [Parvibaculum lavamentivorans DS-1] Length = 269 Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 90/203 (44%), Positives = 121/203 (59%), Gaps = 1/203 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P P F E V G+DE GRG LAGPVV AA+I+D P G+NDSKK+ Sbjct: 44 LPLLPDFRFEIE-EGAPARLVCGVDEAGRGPLAGPVVAAAVIIDLTRCPEGLNDSKKLDA 102 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R +L ++ A I + AS + ID+ NI AT+ A+ AV +L P ALIDG Sbjct: 103 ARRADLLAELADCAEIGVGIASVEEIDEINILHATMLAMTRAVASLPRAPHIALIDGNRC 162 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P L C + AVI GD+++ SIAAASI+AKVTRDR+M + +P YGF+ H+GY T +H Sbjct: 163 PPSLACASRAVIGGDALARSIAAASIVAKVTRDRMMAALAETHPGYGFEKHMGYSTPEHF 222 Query: 186 QVIKEKGPSCIHRLTFRPLRNLS 208 + GP IHR +F P+R + Sbjct: 223 DALSRLGPCAIHRRSFAPVRKML 245 >gi|254492019|ref|ZP_05105197.1| ribonuclease HII [Methylophaga thiooxidans DMS010] gi|224462834|gb|EEF79105.1| ribonuclease HII [Methylophaga thiooxydans DMS010] Length = 190 Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 89/182 (48%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG LAGPVV AA+ILDP+N G+ DSKK+S K+RE L I A ++ Sbjct: 6 LVAGVDEVGRGPLAGPVVTAAVILDPDNPIEGLADSKKLSEKRREFLVPLIKEHALAWAM 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI +A+L A+ AVE L + P L+DG DL C+ VIKGD Sbjct: 66 GRAEPEEIDQINILQASLLAMKRAVEALSITPGHVLVDGI-HAPDLNCKTTTVIKGDQKE 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV RDR M YP YGF H GYPT +HQ+ + + G + IHR +F P Sbjct: 125 PAIAAASILAKVARDREMHEMDLMYPGYGFAQHKGYPTKQHQKALADLGVTDIHRRSFSP 184 Query: 204 LR 205 ++ Sbjct: 185 VQ 186 >gi|319744987|gb|EFV97315.1| ribonuclease HII [Streptococcus agalactiae ATCC 13813] Length = 254 Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 121/198 (61%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +++ +AGIDEVGRG LAGPVV AA+IL PN +NDSKKI KK +E+ Sbjct: 59 LVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLNDSKKIPKKKHQEI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A + I Q ID NI++AT A+ AV +L V P LID ++ DL Sbjct: 119 YQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVAPEHLLID--AMVLDLS 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ SLSIAAASI+AKVTRD++M YP Y F + GY T +H + +++ Sbjct: 177 IPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSTYPGYAFSKNAGYGTKEHLEGLQK 236 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + IHR +F P++++ Sbjct: 237 YGITPIHRKSFEPIKSML 254 >gi|89052882|ref|YP_508333.1| ribonuclease H [Jannaschia sp. CCS1] gi|122499674|sp|Q28VF4|RNH2_JANSC RecName: Full=Ribonuclease HII; Short=RNase HII gi|88862431|gb|ABD53308.1| RNase HII [Jannaschia sp. CCS1] Length = 199 Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 89/199 (44%), Positives = 123/199 (61%), Gaps = 4/199 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P FE+E + VAG+DEVGRG AGPV A++LDP +P G+NDSKK+S +R+ Sbjct: 3 PDFEIERELG----GLVAGVDEVGRGPWAGPVTACAVVLDPMQVPDGLNDSKKLSEARRD 58 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I A +S+ AS + ID NI +AT A+ A++ L P ALIDG +IP L Sbjct: 59 ALAMQILRVADVSLGWASVEEIDALNIRQATFLAMRRAMDGLTTPPTHALIDGNAIPPGL 118 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C A V+KGD S+SIAAASI+AKV RD LM+ +P YG+++++GY TAKH + Sbjct: 119 SCPATCVVKGDGRSVSIAAASIVAKVRRDALMKELAVMHPGYGWETNMGYGTAKHAAGLH 178 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + HR +F P+ + Sbjct: 179 HLGVTQYHRRSFAPIAKIL 197 >gi|22537172|ref|NP_688023.1| ribonuclease HII [Streptococcus agalactiae 2603V/R] gi|25011101|ref|NP_735496.1| ribonuclease HII [Streptococcus agalactiae NEM316] gi|76798272|ref|ZP_00780520.1| ribonuclease HII [Streptococcus agalactiae 18RS21] gi|77410447|ref|ZP_00786808.1| ribonuclease HII [Streptococcus agalactiae CJB111] gi|77413753|ref|ZP_00789934.1| ribonuclease HII [Streptococcus agalactiae 515] gi|39932400|sp|Q8DZT5|RNH2_STRA5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|39932402|sp|Q8E5I2|RNH2_STRA3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|22534036|gb|AAM99895.1|AE014238_8 ribonuclease HII [Streptococcus agalactiae 2603V/R] gi|23095500|emb|CAD46706.1| Unknown [Streptococcus agalactiae NEM316] gi|76586383|gb|EAO62893.1| ribonuclease HII [Streptococcus agalactiae 18RS21] gi|77160182|gb|EAO71312.1| ribonuclease HII [Streptococcus agalactiae 515] gi|77163395|gb|EAO74345.1| ribonuclease HII [Streptococcus agalactiae CJB111] Length = 253 Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 121/198 (61%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +++ +AGIDEVGRG LAGPVV AA+IL PN +NDSKKI KK +E+ Sbjct: 58 LVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A + I Q ID NI++AT A+ AV +L V P LID ++ DL Sbjct: 118 YQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVAPEHLLID--AMVLDLS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ SLSIAAASI+AKVTRD++M YP Y F + GY T +H + +++ Sbjct: 176 IPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSTYPGYAFSKNAGYGTKEHLEGLQK 235 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + IHR +F P++++ Sbjct: 236 YGITPIHRKSFEPIKSML 253 >gi|15615038|ref|NP_243341.1| ribonuclease H [Bacillus halodurans C-125] gi|10720371|sp|Q9Z9S0|RNH2_BACHD RecName: Full=Ribonuclease HII; Short=RNase HII gi|10175095|dbj|BAB06194.1| ribonuclease H [Bacillus halodurans C-125] Length = 263 Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 3/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + K VAG+DEVGRG LAGPVV AA+IL + G+ DSKK++ + RE Sbjct: 62 LAYEKDLWAKGYEHVAGLDEVGRGPLAGPVVTAAVILPKDVQLPGLTDSKKLAKETRESF 121 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A S++ ID+ NI++AT + A++ L V P + L+D ++ L Sbjct: 122 YDRIKEVALAWSVAIVPVTVIDEVNIYQATKQGMMSAIDQLSVNPDALLLD--AMNLPLS 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD SLSIAA+S++AKVTRDR M +YP+YGF+ HVGY T +H + Sbjct: 180 LPQQSLIKGDQKSLSIAASSVLAKVTRDRYMADLANRYPEYGFERHVGYGTEEHLAALNA 239 Query: 191 KGPSCIHRLTFRPLR 205 G + HR +FRP++ Sbjct: 240 HGITPEHRRSFRPVQ 254 >gi|90961695|ref|YP_535611.1| ribonuclease HII [Lactobacillus salivarius UCC118] gi|122449076|sp|Q1WU07|RNH2_LACS1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|90820889|gb|ABD99528.1| Ribonuclease HII [Lactobacillus salivarius UCC118] gi|300214494|gb|ADJ78910.1| Ribonuclease HII (RNase HII) [Lactobacillus salivarius CECT 5713] Length = 255 Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats. Identities = 85/199 (42%), Positives = 133/199 (66%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++E + +K + +AG+DEVGRG LAGPVV AA+IL + F +NDSK++S KKREEL Sbjct: 58 LKIERDLWDKGIEYIAGVDEVGRGPLAGPVVTAAVILPHDFDVFEVNDSKQLSEKKREEL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+KI A+ +S+ + + ID+ NI++AT A+ A+E+L + P+ ++D ++ D Sbjct: 118 YKKILEKAVAVSVGLSDNNLIDEVNIYEATRLAMKQAIESLNITPQKIIVD--AMTIDTK 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S S+AAASI+AKVTRD LM+ + YP YGF+ + GY T +H + ++ Sbjct: 176 IPQLRLIKGDAKSASVAAASIVAKVTRDHLMQFYARIYPGYGFEKNDGYGTKQHLEGLEN 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 KG + IHR +F P++ + + Sbjct: 236 KGVTPIHRQSFEPVKKILL 254 >gi|307067682|ref|YP_003876648.1| ribonuclease HII [Streptococcus pneumoniae AP200] gi|306409219|gb|ADM84646.1| Ribonuclease HII [Streptococcus pneumoniae AP200] Length = 259 Score = 194 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVG G LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGHGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|148998411|ref|ZP_01825853.1| ribonuclease HII [Streptococcus pneumoniae SP11-BS70] gi|147755808|gb|EDK62853.1| ribonuclease HII [Streptococcus pneumoniae SP11-BS70] Length = 260 Score = 194 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AGIDEVG G LAGPVV AA+IL N G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGHGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTK 235 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR +F P+++L + Sbjct: 236 LGVTPIHRTSFEPVKSLVL 254 >gi|256823113|ref|YP_003147076.1| Ribonuclease H [Kangiella koreensis DSM 16069] gi|256796652|gb|ACV27308.1| Ribonuclease H [Kangiella koreensis DSM 16069] Length = 191 Score = 194 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 88/185 (47%), Positives = 119/185 (64%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAGPVV AA+ILDP N G+ DSKK++ K+RE L +I A SI Sbjct: 6 LIAGVDEVGRGPLAGPVVAAAVILDPANPIVGLADSKKLTEKRREALSIEIKEKALAWSI 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI +A+L A+ AVE L P ALIDG +L C+ A+IKGDS Sbjct: 66 ARAEVEEIDRINILQASLLAMKRAVETLSHSPELALIDGN-HCPELDCRMEAIIKGDSKE 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKV RD M + YP YGF H GYPT +H++ I + G + IHR ++ P Sbjct: 125 PAISAASILAKVARDTEMVEMEQTYPGYGFAKHKGYPTQQHREAIMQLGITPIHRRSYAP 184 Query: 204 LRNLS 208 ++ + Sbjct: 185 VQRML 189 >gi|116629569|ref|YP_814741.1| ribonuclease HII [Lactobacillus gasseri ATCC 33323] gi|311110787|ref|ZP_07712184.1| ribonuclease HII [Lactobacillus gasseri MV-22] gi|122273493|sp|Q043R9|RNH2_LACGA RecName: Full=Ribonuclease HII; Short=RNase HII gi|116095151|gb|ABJ60303.1| RNase HII [Lactobacillus gasseri ATCC 33323] gi|311065941|gb|EFQ46281.1| ribonuclease HII [Lactobacillus gasseri MV-22] Length = 250 Score = 194 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 88/194 (45%), Positives = 124/194 (63%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K VAG+DEVGRG LAGPVV AA+IL N +NDSKK+S KKR+EL Sbjct: 55 FSYEKKFWQK-SQLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKEL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + KI + A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++ L Sbjct: 114 FPKILAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVD--AMNVPLN 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ Sbjct: 172 IPQVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALKK 231 Query: 191 KGPSCIHRLTFRPL 204 GP+ IHR +F P+ Sbjct: 232 YGPTPIHRRSFAPV 245 >gi|322389594|ref|ZP_08063143.1| ribonuclease HII [Streptococcus parasanguinis ATCC 903] gi|321143720|gb|EFX39149.1| ribonuclease HII [Streptococcus parasanguinis ATCC 903] Length = 255 Score = 194 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AG+DEVGRG LAGPVV AA+IL N G+NDSKKI K + Sbjct: 58 LAYEKELYTQGIHLIAGVDEVGRGPLAGPVVAAAVILPENCKIPGLNDSKKIPKSKHHAI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + I +Q ID+ NI++AT A+ A++ L P+ LID ++ DLP Sbjct: 118 YQAVLDQALSVGIGIKDNQVIDQVNIYEATKLAMLEAIQELDPRPQHLLID--AMRLDLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M +YP Y F +VGY TA H + + Sbjct: 176 IPQTSIIKGDANSLSIAAASIVAKVTRDQMMEEFDCEYPGYDFTQNVGYGTANHLAGLHK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 236 LGVTPIHRRSFEPIKSM 252 >gi|254479478|ref|ZP_05092803.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653] gi|214034582|gb|EEB75331.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653] Length = 236 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 114/196 (58%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + E+ + +AG+DE GRG L GPVV A +IL INDSKK+ +KRE+L E Sbjct: 42 YEKKLYEEGLNFIAGVDEAGRGPLVGPVVAACVILPKEIFIPEINDSKKLPEEKREKLAE 101 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI I + ID+ NI ATL A+ A+ ++ L+D S D+P + Sbjct: 102 VIKKEAISYGIGIVDCREIDEINILNATLKAMKKAIFEVKEKIEYLLVDAIS-IPDMPIK 160 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGDS S+SIAAASI+AKV RDR+MR HK YP Y F + GY T +H + +K+ G Sbjct: 161 QLPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKGYGTKEHIEALKKHG 220 Query: 193 PSCIHRLTFRPLRNLS 208 P IHR T+ + + Sbjct: 221 PCPIHRRTY--VEKIL 234 >gi|282852052|ref|ZP_06261410.1| ribonuclease HII [Lactobacillus gasseri 224-1] gi|282556812|gb|EFB62416.1| ribonuclease HII [Lactobacillus gasseri 224-1] Length = 250 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 123/194 (63%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K VAG+DEVGRG LAGPVV AA+IL N +NDSKK+S KKR+EL Sbjct: 55 FSYEKKFWQK-SQLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKEL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + KI + A+ + + A++ ID+ NI++A A+ HAV+ L+V P + L+D ++ L Sbjct: 114 FPKILAKAVSVGVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVD--AMNVPLN 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ Sbjct: 172 IPQVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALKK 231 Query: 191 KGPSCIHRLTFRPL 204 GP+ IHR +F P+ Sbjct: 232 YGPTPIHRRSFAPV 245 >gi|260101617|ref|ZP_05751854.1| ribonuclease HII [Lactobacillus helveticus DSM 20075] gi|260084580|gb|EEW68700.1| ribonuclease HII [Lactobacillus helveticus DSM 20075] Length = 250 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 123/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K+ VAG+DEVGRG LAGPVV AA+I+D N +NDSKK+S +KR +L Sbjct: 55 FSYEKQFWQKD-ELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRLQL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI S A+ + I S ID+ NI++A A+ AV+ L V P + L+D ++P D Sbjct: 114 YPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVD-- 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H +K+ Sbjct: 172 LPQIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDALKK 231 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR TF P+ + Sbjct: 232 YGPTPIHRKTFAPVSD 247 >gi|255657930|ref|ZP_05403339.1| ribonuclease HII [Mitsuokella multacida DSM 20544] gi|260850123|gb|EEX70130.1| ribonuclease HII [Mitsuokella multacida DSM 20544] Length = 259 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 127/198 (64%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + VAG+DE GRG LAGPV VAA+IL + +NDSKK+S K REEL Sbjct: 58 YAYEHAAWARGHEIVAGVDEAGRGPLAGPVSVAAVILPHDLCLPKLNDSKKLSAKVREEL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I AI + + Q ID+ NI++AT++ +Y A+ +LQ P+ LID + Sbjct: 118 FDEIQEKAIAVGTALIDAQTIDRVNIYQATINGMYEAIFSLQPAPQEVLIDAVPLDRLPM 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++IKGD+ S SI+AASIIAKVTRDRLM K YP+YGF H GY TA+H + +K+ Sbjct: 178 -PSESIIKGDAKSASISAASIIAKVTRDRLMDEYDKIYPEYGFAQHKGYGTAQHIEALKK 236 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR +F P+R+++ Sbjct: 237 YGPCPIHRRSFEPVRSIA 254 >gi|261419405|ref|YP_003253087.1| ribonuclease HII [Geobacillus sp. Y412MC61] gi|319766220|ref|YP_004131721.1| ribonuclease H [Geobacillus sp. Y412MC52] gi|261375862|gb|ACX78605.1| Ribonuclease H [Geobacillus sp. Y412MC61] gi|317111086|gb|ADU93578.1| Ribonuclease H [Geobacillus sp. Y412MC52] Length = 260 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 83/194 (42%), Positives = 118/194 (60%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AGIDE GRG LAGPVV AA+IL + G++DSK+++ +KRE L+ Sbjct: 60 RYERELYAAGVRRIAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ I I S ID+ NI++AT A+ AV L P L+D ++ P Sbjct: 120 AQIEACAVAIGIGIVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVD--AMAVPCPL 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAAS+IAKVTRDR M+ ++YP YGF H+GY T +H + I+ Sbjct: 178 PQQRLIKGDANSASIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRY 237 Query: 192 GPSCIHRLTFRPLR 205 G + HR +F P+R Sbjct: 238 GVTPEHRRSFAPVR 251 >gi|89092102|ref|ZP_01165057.1| ribonuclease HII [Oceanospirillum sp. MED92] gi|89083837|gb|EAR63054.1| ribonuclease HII [Oceanospirillum sp. MED92] Length = 199 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 90/185 (48%), Positives = 115/185 (62%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDPN G+ DSKK++ K+RE LY +I A Sbjct: 12 KLIAGVDEVGRGPLVGNVVAAAVILDPNKPIEGLADSKKLTAKRREALYHEIKDKALAWC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++SAS + ID+ NI A++ A+ AVE L + +DG P DL C + V+KGDS Sbjct: 72 VASASPEEIDQINILHASMLAMKRAVEGLPLKAEFVYVDGNRSP-DLECPSEPVVKGDSK 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RDR M K YP YGF H GYPTA H +KE GP HR +F+ Sbjct: 131 IPEISAASILAKVDRDREMEELDKTYPQYGFAKHKGYPTAAHFAALKEHGPLLEHRRSFK 190 Query: 203 PLRNL 207 P+R L Sbjct: 191 PVREL 195 >gi|297530620|ref|YP_003671895.1| ribonuclease H [Geobacillus sp. C56-T3] gi|297253872|gb|ADI27318.1| Ribonuclease H [Geobacillus sp. C56-T3] Length = 260 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 83/194 (42%), Positives = 118/194 (60%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AGIDE GRG LAGPVV AA+IL + G++DSK+++ +KRE L+ Sbjct: 60 RYERELYAAGVRRIAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ I I S ID+ NI++AT A+ AV L P L+D ++ P Sbjct: 120 AQIEACAVAIGIGIVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVD--AMAVPCPL 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAAS+IAKVTRDR M+ ++YP YGF H+GY T +H + I+ Sbjct: 178 PQQRLIKGDANSASIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRY 237 Query: 192 GPSCIHRLTFRPLR 205 G + HR +F P+R Sbjct: 238 GVTPEHRRSFAPVR 251 >gi|295396862|ref|ZP_06806990.1| ribonuclease HII [Aerococcus viridans ATCC 11563] gi|294974888|gb|EFG50587.1| ribonuclease HII [Aerococcus viridans ATCC 11563] Length = 269 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 83/195 (42%), Positives = 112/195 (57%), Gaps = 1/195 (0%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +R++ +AG+DEVGRG LAGPVV +A+IL + P NDSK++SH KR+ L Sbjct: 73 TRENELRQQGYQLIAGVDEVGRGPLAGPVVTSAVILPSDMPPVYFNDSKQLSHTKRQALV 132 Query: 73 EKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I AI I + + ID+ NI AT A+ A+ L P LID + + Sbjct: 133 ADIEKYAIAKTIGIQTAEDIDQSNILIATKQAMMSALNQLHPAPDYVLIDAVHLNDYKKA 192 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD+ +IAAASI AK RD LM YP YGF+++ GY T +H +K+ Sbjct: 193 PQEAIIKGDATVYAIAAASIYAKEYRDNLMAEYADLYPGYGFEANAGYGTKQHLDGLKKY 252 Query: 192 GPSCIHRLTFRPLRN 206 GPS IHR TF P++N Sbjct: 253 GPSPIHRKTFAPVKN 267 >gi|90420158|ref|ZP_01228066.1| ribonuclease HII [Aurantimonas manganoxydans SI85-9A1] gi|90335492|gb|EAS49242.1| ribonuclease HII [Aurantimonas manganoxydans SI85-9A1] Length = 228 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 97/197 (49%), Positives = 124/197 (62%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F EA + VAGIDE GRG LAGPVV AA+I + P G+NDSKK++ + RE Sbjct: 25 PDFSREAGLLADGKRFVAGIDEAGRGPLAGPVVTAAVIFPTRDFPDGLNDSKKLTAEDRE 84 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I + + I+SAS ID+ NI ATL A+ A+ L P L+DGR +P L Sbjct: 85 RLFAEIVAKGWVGIASASADEIDRFNIRGATLIAMRRALHALPQAPCHVLVDGRDVPPAL 144 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C AVI GD++SLSIAAASI+AKVTRDR+M A + Y YGF H+GY T +H I Sbjct: 145 RCAGTAVISGDALSLSIAAASIVAKVTRDRIMARACRAYEGYGFSRHMGYGTPEHLGAIA 204 Query: 190 EKGPSCIHRLTFRPLRN 206 GP+ IHR++F PLR Sbjct: 205 RLGPTPIHRMSFSPLRR 221 >gi|322516896|ref|ZP_08069794.1| ribonuclease HII [Streptococcus vestibularis ATCC 49124] gi|322124552|gb|EFX96031.1| ribonuclease HII [Streptococcus vestibularis ATCC 49124] Length = 256 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E ++ + + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI K E + Sbjct: 58 LSYEKVLYAQGVELIAGVDEVGRGPLAGPVVAAAVILPKFCKIKGLNDSKKIPKSKHEAI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + + + ID NI++AT A+ A+E L P LID ++ DLP Sbjct: 118 YKQVMKEAVAVGVGIKDNHVIDDVNIYEATKLAMAEAIEKLSPKPEHLLID--AMTLDLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M +++P Y F + GY T H + Sbjct: 176 IGQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDQEFPGYAFAKNAGYGTKDHLSGLDN 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 236 FGVTPIHRRSFEPIKSI 252 >gi|56419740|ref|YP_147058.1| ribonuclease HII [Geobacillus kaustophilus HTA426] gi|81347633|sp|Q5L0P0|RNH2_GEOKA RecName: Full=Ribonuclease HII; Short=RNase HII gi|56379582|dbj|BAD75490.1| ribonuclease HII [Geobacillus kaustophilus HTA426] Length = 260 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 83/194 (42%), Positives = 118/194 (60%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AGIDE GRG LAGPVV AA+IL + G++DSK+++ +KRE L+ Sbjct: 60 RYERELYAAGVRRIAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPEKREALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ I I S ID+ NI++AT A+ AV L P L+D ++ P Sbjct: 120 AQIEACAVAIGIGIVSAAEIDERNIYEATRQAMAKAVNALSPPPEHLLVD--AMAVPCPL 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAAS+IAKVTRDR M+ ++YP YGF H+GY T +H + I+ Sbjct: 178 PQQRLIKGDANSASIAAASVIAKVTRDRWMKELDRRYPQYGFARHMGYGTPEHFEAIRRY 237 Query: 192 GPSCIHRLTFRPLR 205 G + HR +F P+R Sbjct: 238 GVTPEHRRSFAPVR 251 >gi|322515100|ref|ZP_08068107.1| ribonuclease HII [Actinobacillus ureae ATCC 25976] gi|322118906|gb|EFX91088.1| ribonuclease HII [Actinobacillus ureae ATCC 25976] Length = 197 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 117/188 (62%), Gaps = 2/188 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 N +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I + A Sbjct: 9 NAHLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALC 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A + ID+ NI AT+ A+ AV L + P L+DG IP A AVIKGD Sbjct: 69 WSLGRAEPEEIDQLNILHATMLAMQRAVAGLNIWPDFVLVDGNHIPTLPM-PAQAVIKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M K+YP+YGF H GYPT H + +++ G + HR + Sbjct: 128 SLVAEISAASILAKVARDQEMDELDKQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKS 187 Query: 201 FRPLRNLS 208 F P++ + Sbjct: 188 FAPVKKIL 195 >gi|313892676|ref|ZP_07826259.1| ribonuclease HII [Veillonella sp. oral taxon 158 str. F0412] gi|313442767|gb|EFR61176.1| ribonuclease HII [Veillonella sp. oral taxon 158 str. F0412] Length = 265 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 129/197 (65%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ M+ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDQGMYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREVL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D DL Sbjct: 123 YDIIMKEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMK-LPDLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IA ASIIAKVTRDR M+ ++YP YGF H GY T H++ +++ Sbjct: 182 IPVESIIKGDSKSANIAVASIIAKVTRDRYMKQLDEEYPGYGFGIHKGYYTELHKEAVEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|28899078|ref|NP_798683.1| ribonuclease HII [Vibrio parahaemolyticus RIMD 2210633] gi|260362393|ref|ZP_05775348.1| ribonuclease HII [Vibrio parahaemolyticus K5030] gi|260876840|ref|ZP_05889195.1| ribonuclease HII [Vibrio parahaemolyticus AN-5034] gi|260897272|ref|ZP_05905768.1| ribonuclease HII [Vibrio parahaemolyticus Peru-466] gi|31076897|sp|Q87MF1|RNH2_VIBPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|28807302|dbj|BAC60567.1| ribonuclease HII [Vibrio parahaemolyticus RIMD 2210633] gi|308085359|gb|EFO35054.1| ribonuclease HII [Vibrio parahaemolyticus Peru-466] gi|308091461|gb|EFO41156.1| ribonuclease HII [Vibrio parahaemolyticus AN-5034] gi|308113983|gb|EFO51523.1| ribonuclease HII [Vibrio parahaemolyticus K5030] Length = 211 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 119/200 (59%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 13 ELPPFEY-----PQGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 67 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A ++ S + ID+ NI +AT+ A+ A+ L+V P ALIDG P Sbjct: 68 RLALLPEIKEKALAWAVGRCSPEEIDELNILQATMVAMQRAITGLKVQPDLALIDGNRCP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E + AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPT H + Sbjct: 128 ELPM-DSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFE 186 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206 >gi|260588681|ref|ZP_05854594.1| ribonuclease HII [Blautia hansenii DSM 20583] gi|260541156|gb|EEX21725.1| ribonuclease HII [Blautia hansenii DSM 20583] Length = 256 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 90/197 (45%), Positives = 125/197 (63%), Gaps = 6/197 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + GIDEVGRG AGPVV A+IL P+ +NDSK++S K RE+LY Sbjct: 60 EFEREYEHLGY--ICGIDEVGRGPFAGPVVAGAVILPPDCEILYVNDSKQLSEKMREQLY 117 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ +++ AS Q ID+ NI +AT +A+ AV L V P+ L D +IP+ Sbjct: 118 DEIMEKAVSVAVGYASPQRIDEINILQATYEAMREAVSKLDVTPQILLNDAVTIPQIT-I 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKVTRDRLMR K P+YGF S+ GY + +H + IK+ Sbjct: 177 PQVPIIKGDAKSISIAAASIVAKVTRDRLMREYDKIMPEYGFASNKGYGSKEHIEAIKKY 236 Query: 192 GPSCIHRLTFRPLRNLS 208 GP+ IHR +F + N++ Sbjct: 237 GPTPIHRRSF--IHNVT 251 >gi|227879127|ref|ZP_03997011.1| ribonuclease HII [Lactobacillus crispatus JV-V01] gi|256843160|ref|ZP_05548648.1| ribonuclease HII [Lactobacillus crispatus 125-2-CHN] gi|256850241|ref|ZP_05555670.1| ribonuclease HII [Lactobacillus crispatus MV-1A-US] gi|262046367|ref|ZP_06019329.1| ribonuclease HII [Lactobacillus crispatus MV-3A-US] gi|293380236|ref|ZP_06626317.1| ribonuclease HII [Lactobacillus crispatus 214-1] gi|312977295|ref|ZP_07789043.1| ribonuclease HII [Lactobacillus crispatus CTV-05] gi|227861284|gb|EEJ68919.1| ribonuclease HII [Lactobacillus crispatus JV-V01] gi|256614580|gb|EEU19781.1| ribonuclease HII [Lactobacillus crispatus 125-2-CHN] gi|256712878|gb|EEU27870.1| ribonuclease HII [Lactobacillus crispatus MV-1A-US] gi|260573238|gb|EEX29796.1| ribonuclease HII [Lactobacillus crispatus MV-3A-US] gi|290923203|gb|EFE00125.1| ribonuclease HII [Lactobacillus crispatus 214-1] gi|310895726|gb|EFQ44792.1| ribonuclease HII [Lactobacillus crispatus CTV-05] Length = 250 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 121/196 (61%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E EK VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR +L Sbjct: 55 FSYEKKFWEKG-QLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLKL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI + A+ + I S + ID+ NI++A A+ AV L V P + L+D ++ + Sbjct: 114 YPKILAEAVSVGIGVKSAEVIDQINIYEADRQAMAQAVRALDVKPNALLVD--AMNVPVN 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD+LM + YP Y F + GY T +H + +K+ Sbjct: 172 LPQVKLIKGDAKSNSIAAASIVAKVFRDQLMDDYDRIYPQYCFHHNAGYGTKEHIEALKK 231 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR TF P+ + Sbjct: 232 YGPTPIHRKTFAPVSD 247 >gi|328467373|gb|EGF38451.1| ribonuclease HII [Lactobacillus helveticus MTCC 5463] Length = 249 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 92/194 (47%), Positives = 122/194 (62%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K+ VAG+DEVGRG LAGPVV AA+I+D N +NDSKK+S +KR +L Sbjct: 55 FSYEKQFWQKD-ELVAGVDEVGRGPLAGPVVTAAVIIDHNFDLLEVNDSKKLSPEKRLQL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI S A+ + I S ID+ NI++A A+ AV+ L V P + L+D ++P D Sbjct: 114 YPKILSEAVSVGIGVKSAAVIDQINIYEADRQAMAQAVKALDVKPNALLVDAMNVPVD-- 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H +K+ Sbjct: 172 LPQIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFPRNAGYGTKEHIDALKK 231 Query: 191 KGPSCIHRLTFRPL 204 GP+ IHR TF P+ Sbjct: 232 YGPTPIHRKTFAPV 245 >gi|219669769|ref|YP_002460204.1| ribonuclease HII [Desulfitobacterium hafniense DCB-2] gi|254807972|sp|B8FRK8|RNH2_DESHD RecName: Full=Ribonuclease HII; Short=RNase HII gi|219540029|gb|ACL21768.1| Ribonuclease H [Desulfitobacterium hafniense DCB-2] Length = 260 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 112/196 (57%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AGIDE GRG LAGPVV A IL G+NDSKK++ KRE+L Sbjct: 61 LREEKQLWLNGYLHIAGIDEAGRGPLAGPVVAATCILPAKFNLPGLNDSKKLTESKREKL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I AI ++ SA ID NI +AT A+ AVE L+V P LID L Sbjct: 121 FQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDAL-ELPSLK 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD++S SIAAASI+AKV+RD LM K YP+YGF + GY T +H ++ Sbjct: 180 IPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHLMALRR 239 Query: 191 KGPSCIHRLTFRPLRN 206 G S IHR +F P++ Sbjct: 240 HGVSPIHRRSFAPVQQ 255 >gi|194014254|ref|ZP_03052871.1| ribonuclease HII (RNase HII) [Bacillus pumilus ATCC 7061] gi|194013280|gb|EDW22845.1| ribonuclease HII (RNase HII) [Bacillus pumilus ATCC 7061] Length = 254 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 117/196 (59%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + + +AGIDE GRG LAGPVV AA+IL + + G+NDSK++S KKR Sbjct: 58 LQFENNAKAQGYTCIAGIDEAGRGPLAGPVVAAAVILKEDTVLLGLNDSKQLSEKKRLAY 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A I I ID+ NI++A+ A+ AVE L P LID ++ LP Sbjct: 118 YDLIQKEALDIGIGIVDAATIDEINIYEASRLAMVRAVEQLTHTPDYLLID--AMTLPLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAA + IAKVTRD++M +KYP+Y F+ H GY T +H I+ Sbjct: 176 IHQENIIKGDAKSASIAAGACIAKVTRDQMMEEYGRKYPEYQFEKHKGYGTKEHLAAIQT 235 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHRL+F P+++ Sbjct: 236 HGAAPIHRLSFAPVKS 251 >gi|153839485|ref|ZP_01992152.1| ribonuclease HII [Vibrio parahaemolyticus AQ3810] gi|149746990|gb|EDM57978.1| ribonuclease HII [Vibrio parahaemolyticus AQ3810] Length = 211 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 119/200 (59%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 13 ELPPFEY-----PQGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 67 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A ++ S + ID+ NI +AT+ A+ A+ L+V P ALIDG P Sbjct: 68 RLALLPEIKEKALAWAVGRCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E + AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPT H + Sbjct: 128 ELPM-DSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFE 186 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206 >gi|153835395|ref|ZP_01988062.1| ribonuclease HII [Vibrio harveyi HY01] gi|269960605|ref|ZP_06174977.1| ribonuclease HII [Vibrio harveyi 1DA3] gi|148868081|gb|EDL67253.1| ribonuclease HII [Vibrio harveyi HY01] gi|269834682|gb|EEZ88769.1| ribonuclease HII [Vibrio harveyi 1DA3] Length = 212 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 119/200 (59%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 13 ELPPFEY-----PQGYQLVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 67 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A ++ S + ID+ NI +AT+ A+ A+ L+V P ALIDG P Sbjct: 68 RLALLPEIKEKALAWAVGRCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + + AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPT H + Sbjct: 128 QLPM-DSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFE 186 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206 >gi|291550686|emb|CBL26948.1| Ribonuclease HII [Ruminococcus torques L2-14] Length = 252 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 118/195 (60%), Gaps = 6/195 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + GIDE GRG LAGPVV A+IL + +NDSKK+S KREELY Sbjct: 61 TFERKYAD--YSFICGIDEAGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSAAKREELY 118 Query: 73 EKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ + + AS ID+ NI +AT +A+ A+ L V P L D +IP ++ Sbjct: 119 DEIMEKAVAAAVGMASPARIDEINILQATYEAMREAISKLAVEPGILLNDAVTIP-EMII 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKVTRDRLM K P+YGF H GY + +H + IK+ Sbjct: 178 PQVPIIKGDAKSVSIAAASILAKVTRDRLMVEYDKVMPEYGFAGHKGYGSKEHIEAIKKY 237 Query: 192 GPSCIHRLTFRPLRN 206 GP+ IHR TF ++ Sbjct: 238 GPTPIHRKTF--IKK 250 >gi|171779427|ref|ZP_02920391.1| hypothetical protein STRINF_01272 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282044|gb|EDT47475.1| hypothetical protein STRINF_01272 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 262 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 80/199 (40%), Positives = 116/199 (58%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + GIDEVGRG LAGPVV A +IL N +NDSKKI K EE+ Sbjct: 61 LRYEKELYQAGYEAIGGIDEVGRGPLAGPVVTACVILPKNCKIKHLNDSKKIPKKHHEEI 120 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPEDL 129 YE++ + A + I + ID NI++AT + A++ + + + + ++ D Sbjct: 121 YEEVLARALGVGIGVIDNNVIDDINIYEATKVGMLQAIDQIKGQVTKPDYLLIDAMHLDT 180 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SLSIAAASI+AKVTRDR+M K+YP Y F+ +VGY T H +K Sbjct: 181 DIPQQSLIKGDANSLSIAAASIVAKVTRDRMMADYAKEYPGYAFEKNVGYGTKDHLVGLK 240 Query: 190 EKGPSCIHRLTFRPLRNLS 208 E G + IHR TF P++++ Sbjct: 241 EHGITPIHRKTFEPIKSML 259 >gi|20372971|dbj|BAB91155.1| ribonuclease HII [Geobacillus stearothermophilus] Length = 259 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 118/194 (60%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AGIDE GRG LAGPVV A++IL P+ G++DSK+++ KRE L+ Sbjct: 61 RYERELYAAGIERIAGIDEAGRGPLAGPVVAASVILPPDAYLPGLDDSKRLTAAKREALF 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + A+ + I S ID+ NI++AT A+ AV L P L+D ++ Sbjct: 121 AQIEACAVAVGIGIVSAAEIDERNIYEATKQAMAKAVSALSPPPDYLLVD--AMAVPCAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD+ S SIAAASI+AKVTRDRLM+ ++YP YGF H+GY T +H + I+ Sbjct: 179 PQRRLMKGDANSASIAAASIMAKVTRDRLMKELDRRYPQYGFARHMGYGTPEHLEAIRRY 238 Query: 192 GPSCIHRLTFRPLR 205 G + HR +F P++ Sbjct: 239 GITPEHRRSFAPVK 252 >gi|315150451|gb|EFT94467.1| ribonuclease HII [Enterococcus faecalis TX0012] Length = 255 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID ++ D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLID--AMQLDVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|29376207|ref|NP_815361.1| ribonuclease HII [Enterococcus faecalis V583] gi|227518838|ref|ZP_03948887.1| ribonuclease HII [Enterococcus faecalis TX0104] gi|227553455|ref|ZP_03983504.1| ribonuclease HII [Enterococcus faecalis HH22] gi|256961843|ref|ZP_05566014.1| ribonuclease HII [Enterococcus faecalis Merz96] gi|293382908|ref|ZP_06628826.1| ribonuclease HII [Enterococcus faecalis R712] gi|293389603|ref|ZP_06634060.1| ribonuclease HII [Enterococcus faecalis S613] gi|312907622|ref|ZP_07766613.1| ribonuclease HII [Enterococcus faecalis DAPTO 512] gi|312910239|ref|ZP_07769086.1| ribonuclease HII [Enterococcus faecalis DAPTO 516] gi|39932363|sp|Q834J7|RNH2_ENTFA RecName: Full=Ribonuclease HII; Short=RNase HII gi|29343670|gb|AAO81431.1| ribonuclease HII [Enterococcus faecalis V583] gi|227073709|gb|EEI11672.1| ribonuclease HII [Enterococcus faecalis TX0104] gi|227177412|gb|EEI58384.1| ribonuclease HII [Enterococcus faecalis HH22] gi|256952339|gb|EEU68971.1| ribonuclease HII [Enterococcus faecalis Merz96] gi|291079573|gb|EFE16937.1| ribonuclease HII [Enterococcus faecalis R712] gi|291081220|gb|EFE18183.1| ribonuclease HII [Enterococcus faecalis S613] gi|310626650|gb|EFQ09933.1| ribonuclease HII [Enterococcus faecalis DAPTO 512] gi|311289512|gb|EFQ68068.1| ribonuclease HII [Enterococcus faecalis DAPTO 516] gi|315575779|gb|EFU87970.1| ribonuclease HII [Enterococcus faecalis TX0309B] gi|315580431|gb|EFU92622.1| ribonuclease HII [Enterococcus faecalis TX0309A] Length = 255 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID ++ D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLID--AMQLDVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|257085098|ref|ZP_05579459.1| ribonuclease HII [Enterococcus faecalis Fly1] gi|256993128|gb|EEU80430.1| ribonuclease HII [Enterococcus faecalis Fly1] Length = 255 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID ++ D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLID--AMQLDVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|77408047|ref|ZP_00784795.1| ribonuclease HII [Streptococcus agalactiae COH1] gi|77173312|gb|EAO76433.1| ribonuclease HII [Streptococcus agalactiae COH1] Length = 253 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 124/198 (62%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +++ +AGIDEVGRG LAGPVV AA+IL PN +NDSKKI KK +E+ Sbjct: 58 LVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPNCKIKHLNDSKKIPKKKHQEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A + I Q ID NI++AT A+ AV +L V+P LID ++ DLP Sbjct: 118 YQNILDQALAVGIGIQDSQCIDDINIYEATKHAMIDAVSHLSVVPEHLLID--AMVLDLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ SLSIAAASI+AKVTRD++M KYP + F + GY T +H + +++ Sbjct: 176 IPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSKYPGFAFSKNAGYGTKEHLEGLQK 235 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + IHR +F P++++ Sbjct: 236 YGITPIHRKSFEPIKSML 253 >gi|322376562|ref|ZP_08051055.1| ribonuclease HII [Streptococcus sp. M334] gi|321282369|gb|EFX59376.1| ribonuclease HII [Streptococcus sp. M334] Length = 259 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 124/197 (62%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL N +NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVSAAVILPQNCKIKDLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + A I I +Q ID+ NI++AT A+ A+ L P LID + DLP Sbjct: 118 FQAVQDQALSIGIGIMDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + +++ Sbjct: 176 ISQTSIIKGDANSLSIAAASIVAKVTRDELMKDYDQQFPGYDFTANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P+++L Sbjct: 236 LGVTPIHRTSFEPVKSL 252 >gi|260902377|ref|ZP_05910772.1| ribonuclease HII [Vibrio parahaemolyticus AQ4037] gi|308110185|gb|EFO47725.1| ribonuclease HII [Vibrio parahaemolyticus AQ4037] gi|328474385|gb|EGF45190.1| ribonuclease HII [Vibrio parahaemolyticus 10329] Length = 211 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 85/189 (44%), Positives = 114/189 (60%), Gaps = 2/189 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I Sbjct: 19 YPQGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEK 78 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ S + ID+ NI +AT+ A+ A+ L+V P LIDG PE + AV+ Sbjct: 79 ALAWAVGRCSPEEIDELNILQATMVAMQRAIAGLKVQPDLVLIDGNRCPELPM-DSQAVV 137 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I+AASIIAKV RD+ M K+YP +GF H GYPT H + I++ G H Sbjct: 138 KGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFEAIEQHGVISEH 197 Query: 198 RLTFRPLRN 206 R +F+P++ Sbjct: 198 RKSFKPVKK 206 >gi|227889894|ref|ZP_04007699.1| ribonuclease HII [Lactobacillus johnsonii ATCC 33200] gi|227849338|gb|EEJ59424.1| ribonuclease HII [Lactobacillus johnsonii ATCC 33200] Length = 250 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 123/194 (63%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K+ VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S KKR+ L Sbjct: 55 FSYEKEFWQKD-RLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKRQAL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + KI A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++ L Sbjct: 114 FPKILEKAVSVSVGLANNDVIDQINIYEADRVAMAHAVQGLKVKPDALLVD--AMNVPLN 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ Sbjct: 172 IPQVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEALKK 231 Query: 191 KGPSCIHRLTFRPL 204 GP+ IHR +F P+ Sbjct: 232 YGPTPIHRRSFAPV 245 >gi|312903393|ref|ZP_07762573.1| ribonuclease HII [Enterococcus faecalis TX0635] gi|310633269|gb|EFQ16552.1| ribonuclease HII [Enterococcus faecalis TX0635] gi|315577621|gb|EFU89812.1| ribonuclease HII [Enterococcus faecalis TX0630] Length = 255 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID ++ D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLID--AMQLDVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|295113049|emb|CBL31686.1| Ribonuclease HII [Enterococcus sp. 7L76] gi|315145132|gb|EFT89148.1| ribonuclease HII [Enterococcus faecalis TX2141] gi|315160534|gb|EFU04551.1| ribonuclease HII [Enterococcus faecalis TX0645] gi|315168949|gb|EFU12966.1| ribonuclease HII [Enterococcus faecalis TX1341] Length = 255 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID ++ D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLID--AMQLDVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|255975761|ref|ZP_05426347.1| ribonuclease HII [Enterococcus faecalis T2] gi|307277980|ref|ZP_07559064.1| ribonuclease HII [Enterococcus faecalis TX0860] gi|255968633|gb|EET99255.1| ribonuclease HII [Enterococcus faecalis T2] gi|306505377|gb|EFM74563.1| ribonuclease HII [Enterococcus faecalis TX0860] Length = 255 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID ++ D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLID--AMQLDVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|323480814|gb|ADX80253.1| ribonuclease HII [Enterococcus faecalis 62] Length = 255 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID ++ D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLID--AMQLDVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|229545737|ref|ZP_04434462.1| ribonuclease HII [Enterococcus faecalis TX1322] gi|229549926|ref|ZP_04438651.1| ribonuclease HII [Enterococcus faecalis ATCC 29200] gi|255972709|ref|ZP_05423295.1| ribonuclease HII [Enterococcus faecalis T1] gi|256619148|ref|ZP_05475994.1| ribonuclease HII [Enterococcus faecalis ATCC 4200] gi|256762584|ref|ZP_05503164.1| ribonuclease HII [Enterococcus faecalis T3] gi|256853210|ref|ZP_05558580.1| ribonuclease HII [Enterococcus faecalis T8] gi|256959064|ref|ZP_05563235.1| ribonuclease HII [Enterococcus faecalis DS5] gi|256965040|ref|ZP_05569211.1| ribonuclease HII [Enterococcus faecalis HIP11704] gi|257079095|ref|ZP_05573456.1| ribonuclease HII [Enterococcus faecalis JH1] gi|257082466|ref|ZP_05576827.1| ribonuclease HII [Enterococcus faecalis E1Sol] gi|257086659|ref|ZP_05581020.1| ribonuclease HII [Enterococcus faecalis D6] gi|257416178|ref|ZP_05593172.1| ribonuclease HII [Enterococcus faecalis AR01/DG] gi|257419380|ref|ZP_05596374.1| ribonuclease HII [Enterococcus faecalis T11] gi|257422526|ref|ZP_05599516.1| ribonuclease HII [Enterococcus faecalis X98] gi|294781634|ref|ZP_06746970.1| ribonuclease HII [Enterococcus faecalis PC1.1] gi|300860321|ref|ZP_07106408.1| ribonuclease HII [Enterococcus faecalis TUSoD Ef11] gi|307270933|ref|ZP_07552216.1| ribonuclease HII [Enterococcus faecalis TX4248] gi|307273138|ref|ZP_07554384.1| ribonuclease HII [Enterococcus faecalis TX0855] gi|307274873|ref|ZP_07556036.1| ribonuclease HII [Enterococcus faecalis TX2134] gi|307289192|ref|ZP_07569148.1| ribonuclease HII [Enterococcus faecalis TX0109] gi|307291911|ref|ZP_07571780.1| ribonuclease HII [Enterococcus faecalis TX0411] gi|312899500|ref|ZP_07758830.1| ribonuclease HII [Enterococcus faecalis TX0470] gi|312951583|ref|ZP_07770479.1| ribonuclease HII [Enterococcus faecalis TX0102] gi|229304939|gb|EEN70935.1| ribonuclease HII [Enterococcus faecalis ATCC 29200] gi|229309187|gb|EEN75174.1| ribonuclease HII [Enterococcus faecalis TX1322] gi|255963727|gb|EET96203.1| ribonuclease HII [Enterococcus faecalis T1] gi|256598675|gb|EEU17851.1| ribonuclease HII [Enterococcus faecalis ATCC 4200] gi|256683835|gb|EEU23530.1| ribonuclease HII [Enterococcus faecalis T3] gi|256711669|gb|EEU26707.1| ribonuclease HII [Enterococcus faecalis T8] gi|256949560|gb|EEU66192.1| ribonuclease HII [Enterococcus faecalis DS5] gi|256955536|gb|EEU72168.1| ribonuclease HII [Enterococcus faecalis HIP11704] gi|256987125|gb|EEU74427.1| ribonuclease HII [Enterococcus faecalis JH1] gi|256990496|gb|EEU77798.1| ribonuclease HII [Enterococcus faecalis E1Sol] gi|256994689|gb|EEU81991.1| ribonuclease HII [Enterococcus faecalis D6] gi|257158006|gb|EEU87966.1| ribonuclease HII [Enterococcus faecalis ARO1/DG] gi|257161208|gb|EEU91168.1| ribonuclease HII [Enterococcus faecalis T11] gi|257164350|gb|EEU94310.1| ribonuclease HII [Enterococcus faecalis X98] gi|294451330|gb|EFG19796.1| ribonuclease HII [Enterococcus faecalis PC1.1] gi|300849360|gb|EFK77110.1| ribonuclease HII [Enterococcus faecalis TUSoD Ef11] gi|306496909|gb|EFM66457.1| ribonuclease HII [Enterococcus faecalis TX0411] gi|306499901|gb|EFM69262.1| ribonuclease HII [Enterococcus faecalis TX0109] gi|306508321|gb|EFM77428.1| ribonuclease HII [Enterococcus faecalis TX2134] gi|306510123|gb|EFM79147.1| ribonuclease HII [Enterococcus faecalis TX0855] gi|306512431|gb|EFM81080.1| ribonuclease HII [Enterococcus faecalis TX4248] gi|310630549|gb|EFQ13832.1| ribonuclease HII [Enterococcus faecalis TX0102] gi|311293370|gb|EFQ71926.1| ribonuclease HII [Enterococcus faecalis TX0470] gi|315027181|gb|EFT39113.1| ribonuclease HII [Enterococcus faecalis TX2137] gi|315029298|gb|EFT41230.1| ribonuclease HII [Enterococcus faecalis TX4000] gi|315034056|gb|EFT45988.1| ribonuclease HII [Enterococcus faecalis TX0017] gi|315037065|gb|EFT48997.1| ribonuclease HII [Enterococcus faecalis TX0027] gi|315147349|gb|EFT91365.1| ribonuclease HII [Enterococcus faecalis TX4244] gi|315152395|gb|EFT96411.1| ribonuclease HII [Enterococcus faecalis TX0031] gi|315155667|gb|EFT99683.1| ribonuclease HII [Enterococcus faecalis TX0043] gi|315158162|gb|EFU02179.1| ribonuclease HII [Enterococcus faecalis TX0312] gi|315164101|gb|EFU08118.1| ribonuclease HII [Enterococcus faecalis TX1302] gi|315169817|gb|EFU13834.1| ribonuclease HII [Enterococcus faecalis TX1342] gi|315172218|gb|EFU16235.1| ribonuclease HII [Enterococcus faecalis TX1346] gi|327535218|gb|AEA94052.1| ribonuclease H [Enterococcus faecalis OG1RF] Length = 255 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 127/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID ++ D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLID--AMQLDVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|312622766|ref|YP_004024379.1| ribonuclease h [Caldicellulosiruptor kronotskyensis 2002] gi|312203233|gb|ADQ46560.1| Ribonuclease H [Caldicellulosiruptor kronotskyensis 2002] Length = 206 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 85/198 (42%), Positives = 126/198 (63%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG IP Sbjct: 70 FEEIIKESIAYSVAMVDSKVIDEININNATFLAMKNAIENLKIEPDIVLVDGYKIPNLSF 129 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 130 -NQRAIIKGDKKSYSIACASILAKVSRDRFIVEISSKYPLYKFEKHKGYGTKEHIEILQK 188 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNIL 204 >gi|156975492|ref|YP_001446399.1| ribonuclease HII [Vibrio harveyi ATCC BAA-1116] gi|166226667|sp|A7MY01|RNH2_VIBHB RecName: Full=Ribonuclease HII; Short=RNase HII gi|156527086|gb|ABU72172.1| hypothetical protein VIBHAR_03223 [Vibrio harveyi ATCC BAA-1116] Length = 212 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 91/200 (45%), Positives = 119/200 (59%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 13 ELPPFEY-----PQGYQLVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 67 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A ++ S + ID+ NI +AT+ A+ A+ L+V P ALIDG P Sbjct: 68 RLALLPEIKEKALAWAVGRCSPEEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E + AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPT H + Sbjct: 128 ELPM-DSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQYPQFGFAKHKGYPTKAHFE 186 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206 >gi|138894726|ref|YP_001125179.1| ribonuclease HII [Geobacillus thermodenitrificans NG80-2] gi|196247655|ref|ZP_03146357.1| Ribonuclease H [Geobacillus sp. G11MC16] gi|166225189|sp|A4IM80|RNH2_GEOTN RecName: Full=Ribonuclease HII; Short=RNase HII gi|134266239|gb|ABO66434.1| Ribonuclease HII [Geobacillus thermodenitrificans NG80-2] gi|196212439|gb|EDY07196.1| Ribonuclease H [Geobacillus sp. G11MC16] Length = 259 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 82/194 (42%), Positives = 113/194 (58%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + +AGIDE GRG LAGPVV AA+IL + G++DSK+++ KRE L+ Sbjct: 61 RYERELYAAGIERIAGIDEAGRGPLAGPVVAAAVILPKDAYLPGLDDSKRLTPAKREALF 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + S ID+ NI++AT A+ AV L P L+D ++ Sbjct: 121 AQIEECAVAIGVGIVSAAEIDEWNIYEATKQAMAKAVAALSPSPEHLLVD--AMTVPCAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAASIIAKVTRDR M ++YP YGF H+GY T +H I+ Sbjct: 179 PQQRLIKGDANSASIAAASIIAKVTRDRWMHELDRRYPQYGFARHMGYGTPEHLAAIRRY 238 Query: 192 GPSCIHRLTFRPLR 205 G + HR +F P+R Sbjct: 239 GVTDEHRRSFAPVR 252 >gi|89098661|ref|ZP_01171543.1| ribonuclease HII [Bacillus sp. NRRL B-14911] gi|89086623|gb|EAR65742.1| ribonuclease HII [Bacillus sp. NRRL B-14911] Length = 255 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 121/195 (62%), Gaps = 3/195 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +++ +AG DE GRG LAGPV+ AA+IL G++DSKK+S KR+E Y+ Sbjct: 62 FERRLKKSGWTMIAGTDEAGRGPLAGPVIAAAVILPEGFYLPGLDDSKKLSEAKRDEFYK 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I S A + I S ID+ NI +A+ A+ A+ ++ P L D + D+P Q Sbjct: 122 EIMSGASAVGIGRISAGEIDRINILQASKKAMLLALADMGSTPDYLLTDAVDL--DVPYQ 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A AVIKGDS S++IAAAS+IAKVTRDR MR ++YP YGF ++GY T +H + I++ G Sbjct: 180 AEAVIKGDSKSVTIAAASVIAKVTRDRYMRELDEQYPHYGFGRNMGYGTRQHLEAIEKHG 239 Query: 193 PSCIHRLTFRPLRNL 207 HR +F P++ + Sbjct: 240 IINEHRKSFAPIKGM 254 >gi|323705455|ref|ZP_08117030.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11] gi|323535357|gb|EGB25133.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11] Length = 252 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 114/196 (58%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + + GIDEVGRG LAGPVV +IL + I+DSKK+S KRE L E Sbjct: 58 YENELYNLDYKLIGGIDEVGRGPLAGPVVAGCVILPKQSFIPDIDDSKKLSESKRELLSE 117 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI I ++ ID+ NI +T +A+ A+ NL + L+D + D+ Sbjct: 118 IIKKKAIAYGIGIIDNEQIDRINILNSTYEAMKVAISNLNIKADFLLVDAIT-IPDIDIA 176 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASI+AKVTRD +MR + YP YGF + GY T +H + IK+ G Sbjct: 177 QIPIIKGDAKSISIAAASIVAKVTRDNIMRKYDEMYPQYGFCKNKGYGTKEHIEAIKKYG 236 Query: 193 PSCIHRLTFRPLRNLS 208 P IHR TF L+++ Sbjct: 237 PCPIHRKTF--LKSIL 250 >gi|331005976|ref|ZP_08329321.1| Ribonuclease HII [gamma proteobacterium IMCC1989] gi|330420221|gb|EGG94542.1| Ribonuclease HII [gamma proteobacterium IMCC1989] Length = 202 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DEVGRG LAG VV AA+IL PN G+NDSKK+S KKR+ L++ I A SI+ Sbjct: 14 AGVDEVGRGPLAGDVVTAAVILGPNKPIEGLNDSKKLSEKKRDALFDIIKERALSWSIAR 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+L A+ AV+ L + P +DG +P A VIKGDS + Sbjct: 74 CSVEDIDQINILQASLLAMKKAVDGLAITPEHVWVDGNKMPR-WNYTAETVIKGDSRVPA 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AKVTRDR M ++YP YGF +H GYPT H ++ G + IHR ++ P++ Sbjct: 133 IAAASILAKVTRDREMVAYEEQYPGYGFAAHKGYPTKVHIDALQRLGITPIHRRSYAPVK 192 Query: 206 NLS 208 + Sbjct: 193 KIL 195 >gi|325696515|gb|EGD38405.1| ribonuclease HII [Streptococcus sanguinis SK160] Length = 254 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + +AGIDEVGRG LAGPVV AA+IL P G+NDSKKI KK +++ Sbjct: 58 LRYEKELYKADYQAIAGIDEVGRGPLAGPVVAAAVILPPECKIKGLNDSKKIPKKKHQDI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A + + +++ ID+ NI++AT A+ A+ L + P LID + D Sbjct: 118 YQAVLDKALAVGVGLMNNEIIDQVNIYEATKLAMKEALSKLSLKPDYLLIDAMKLDVD-- 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD+LM KK+P Y F + GY T H Q ++ Sbjct: 176 IPQESIIKGDANSLSIAAASIVAKVTRDKLMADYDKKFPGYDFAKNAGYGTRSHLQGLER 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 SGVTPIHRKTFEPIKSM 252 >gi|150395676|ref|YP_001326143.1| ribonuclease HII [Sinorhizobium medicae WSM419] gi|166226656|sp|A6U6M8|RNH2_SINMW RecName: Full=Ribonuclease HII; Short=RNase HII gi|150027191|gb|ABR59308.1| Ribonuclease H [Sinorhizobium medicae WSM419] Length = 216 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 105/206 (50%), Positives = 139/206 (67%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 P P F E + +WPVAG DE GRG LAGPVV AA+IL+P+ IP G+NDSK Sbjct: 11 LFPFQPPVPDFAFERAAQRDGLWPVAGADEAGRGPLAGPVVAAAVILNPDAIPTGLNDSK 70 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ ++RE L+E+I ++A +SI+S+S ID +I KA+LDA+ AV L+V R L+D Sbjct: 71 LLTAEQRETLFEEILATATVSIASSSSARIDTTDILKASLDAMRRAVHGLEVAARIVLVD 130 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 GR +P L C A A++KGDS S+SIAAASI+AKVTRDR+M A +P YGF H GY T Sbjct: 131 GRDVPPGLSCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPLYGFAHHAGYAT 190 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 KH+ I+ GP +HR++FRP R L Sbjct: 191 VKHRTAIESHGPCSLHRMSFRPFRQL 216 >gi|162447204|ref|YP_001620336.1| ribonuclease HII [Acholeplasma laidlawii PG-8A] gi|189043526|sp|A9NF30|RNH2_ACHLI RecName: Full=Ribonuclease HII; Short=RNase HII gi|161985311|gb|ABX80960.1| ribonuclease HII [Acholeplasma laidlawii PG-8A] Length = 202 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 86/199 (43%), Positives = 114/199 (57%), Gaps = 4/199 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 + E + +K + G+DE GRG LAGPVV AA+I + INDSK +S KKRE Sbjct: 5 NLAFEKALYDKGYTYICGVDEAGRGPLAGPVVAAAVIFEKGFYHEDINDSKTLSAKKRET 64 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+E I A I +S +H+ IDK NI +A A+ A+ L++ P+ AL D + Sbjct: 65 LFELIKQHALAIGVSVVNHEVIDKINILEAARHAMEDAISKLKIKPQYALTD---HMDIK 121 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++ GD +S+SIAAASIIAKVTRD+LM + YP YGF H GY T KH + + Sbjct: 122 GIPYTSIKHGDQLSISIAAASIIAKVTRDKLMVDYDEVYPQYGFKDHKGYGTRKHLEALN 181 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G S IHR TF P+ L Sbjct: 182 LYGVSPIHRKTFAPVAKLL 200 >gi|291542667|emb|CBL15777.1| RNase HII [Ruminococcus bromii L2-63] Length = 201 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + G+DE GRG LAGPV AA+IL N + G+NDSKK+S KKRE L Sbjct: 4 LEYENKNIARGFLSICGVDEAGRGPLAGPVCAAAVILPENTVIEGVNDSKKLSEKKREAL 63 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ I A SI+ AS + I++ NI A + A+ AVE L+ A+IDG +P Sbjct: 64 FDVIKEQALAYSIAFASVEEIEEMNILNAAMLAMKRAVEGLEPRADYAMIDGNRMPPL-S 122 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++KGD+ S+SIA ASI+AKV+RDRL+ K++P Y F H GY T H + I + Sbjct: 123 IEGECIVKGDAKSMSIACASILAKVSRDRLLYEYDKEFPQYLFAKHKGYGTKAHIEAILK 182 Query: 191 KGPSCIHRLTFRPLRNL 207 GP HR +F L+ + Sbjct: 183 YGPCKYHRPSF--LKKI 197 >gi|52424478|ref|YP_087615.1| ribonuclease HII [Mannheimia succiniciproducens MBEL55E] gi|81387520|sp|Q65VI0|RNH2_MANSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|52306530|gb|AAU37030.1| RnhB protein [Mannheimia succiniciproducens MBEL55E] Length = 198 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 92/197 (46%), Positives = 120/197 (60%), Gaps = 5/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKRE+L Sbjct: 3 EFE---YPQGFELIAGVDEVGRGPLVGAVVTAAVILDPNNPIDGLTDSKKLSEKKREKLA 59 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E+I A ++ A + ID NI +AT+ A+ A++NL++ P LIDG IP+ Sbjct: 60 EEIKQKALAWALGRAEPEEIDALNILQATMLAMQRAIKNLKIQPHFVLIDGNRIPQL-AI 118 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A AV+KGDS+ I+AASIIAKV+RD M + K+YP Y F H GYPT H + E Sbjct: 119 PAQAVVKGDSLVAEISAASIIAKVSRDHEMEVLDKQYPQYEFAKHKGYPTKVHLAKLAEF 178 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+R L Sbjct: 179 GVLPQHRRSFSPVRKLL 195 >gi|300812547|ref|ZP_07092964.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496420|gb|EFK31525.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 256 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E K VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR L Sbjct: 56 FSYEKDFWAKG-QLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLAL 114 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI A+ + + ++ ID+ NI++A A+ AVE L P + L+D ++P D Sbjct: 115 YPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + +++ Sbjct: 173 LPQLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRK 232 Query: 191 KGPSCIHRLTFRPLRNL 207 GP+ IHRLTF P+ + Sbjct: 233 YGPTPIHRLTFSPVSEM 249 >gi|313892616|ref|ZP_07826203.1| ribonuclease HII [Dialister microaerophilus UPII 345-E] gi|313119013|gb|EFR42218.1| ribonuclease HII [Dialister microaerophilus UPII 345-E] Length = 264 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 86/199 (43%), Positives = 129/199 (64%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + +E+ ++ M V GIDEVGRG LAGPV VAA+IL P+ +NDSKK+S +KRE + Sbjct: 56 YAVESEFYKQGMQYVVGIDEVGRGPLAGPVTVAAVILKPHWFVENLNDSKKVSKEKREII 115 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +KI A ISI+ S + ID NI++AT+ A+Y AV+ L++ P++ ++D ++P Sbjct: 116 SKKIHEEALAISITDLSVEEIDTLNIYQATMLAMYQAVKKLEIKPQAVIVD--AMPLHFQ 173 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++I GDS S S+AAASI+AKV RD +M K YP Y F+ + GY T KH + I E Sbjct: 174 VPCKSLIHGDSKSASVAAASIVAKVHRDHIMDEYAKIYPGYDFEDNKGYGTKKHMEAIYE 233 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR ++ P++++ + Sbjct: 234 LGITPIHRKSYEPVKSIVL 252 >gi|329667434|gb|AEB93382.1| ribonuclease HII [Lactobacillus johnsonii DPC 6026] Length = 250 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 123/194 (63%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K+ VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S KKR+ L Sbjct: 55 FSYEKEFWQKD-QLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKRQAL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + KI A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++ L Sbjct: 114 FPKILEKAVSVSVGLANNDVIDQINIYEADRVAMAHAVQGLKVKPDALLVD--AMNVPLN 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ Sbjct: 172 IPQVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEALKK 231 Query: 191 KGPSCIHRLTFRPL 204 GP+ IHR +F P+ Sbjct: 232 YGPTPIHRRSFAPV 245 >gi|42519032|ref|NP_964962.1| ribonuclease HII [Lactobacillus johnsonii NCC 533] gi|73917610|sp|Q74JK1|RNH2_LACJO RecName: Full=Ribonuclease HII; Short=RNase HII gi|41583319|gb|AAS08928.1| ribonuclease HII [Lactobacillus johnsonii NCC 533] Length = 250 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 85/194 (43%), Positives = 123/194 (63%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K+ VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S KKR+ L Sbjct: 55 FSYEKEFWQKD-QLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKRQAL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + KI A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++ L Sbjct: 114 FPKILEKAVSVSVGLANNDVIDQINIYEADRLAMAHAVQGLKVKPDALLVD--AMNVPLN 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +++ Sbjct: 172 IPQVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEALEK 231 Query: 191 KGPSCIHRLTFRPL 204 GP+ IHR +F P+ Sbjct: 232 YGPTPIHRRSFAPV 245 >gi|319898589|ref|YP_004158682.1| Ribonuclease HII [Bartonella clarridgeiae 73] gi|319402553|emb|CBI76098.1| Ribonuclease HII [Bartonella clarridgeiae 73] Length = 212 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 101/203 (49%), Positives = 143/203 (70%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++P +P+F E +++K + +AG+DEVGRG LAGPVV AA++LD + IP G+NDSKK+S Sbjct: 3 NVPFQPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVVLDKDCIPEGVNDSKKLS 62 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R +LY +I +A IS++S + IDK +I KATL+A+ + L + ALIDGR Sbjct: 63 SQQRNKLYYEILQNALAISVASICARTIDKSDIRKATLEAMRRCISGLAISAHYALIDGR 122 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P +LPC A A+IKGD S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY TA Sbjct: 123 DVPPNLPCPAIALIKGDQSSVSIAAASIIAKVMRDRMMQYAGQVYQNYGLEKHVGYATAA 182 Query: 184 HQQVIKEKGP-SCIHRLTFRPLR 205 H+ I + GP +HR +F PL+ Sbjct: 183 HRAAIDKYGPIVRLHRYSFSPLK 205 >gi|238916977|ref|YP_002930494.1| ribonuclease HII [Eubacterium eligens ATCC 27750] gi|238872337|gb|ACR72047.1| ribonuclease HII [Eubacterium eligens ATCC 27750] Length = 218 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 116/195 (59%), Gaps = 6/195 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E M + GIDE GRG LAGPVV A+IL +NDSKK+S KKR+EL+ Sbjct: 27 EYEEMY--DTFSYICGIDEAGRGPLAGPVVAGAVILPKGKRILYVNDSKKLSEKKRDELF 84 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A I S + ID+ NI +AT +A++ AV L V P L D +IP + Sbjct: 85 DVIKEEALSYGIGIVSPERIDEINILQATYEAMHEAVNKLSVKPDILLNDAVTIP-GIDI 143 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ SLSIA+ASI+AKVTRDRLM YP+YGF H GY T H + IKE Sbjct: 144 KQIPIIKGDAKSLSIASASILAKVTRDRLMTEYDSLYPEYGFARHKGYGTKVHIEAIKEY 203 Query: 192 GPSCIHRLTFRPLRN 206 GP IHR TF ++N Sbjct: 204 GPCPIHRRTF--IKN 216 >gi|268319575|ref|YP_003293231.1| hypothetical protein FI9785_1100 [Lactobacillus johnsonii FI9785] gi|262397950|emb|CAX66964.1| rnhB [Lactobacillus johnsonii FI9785] Length = 250 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 123/194 (63%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K+ VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S KKR+ L Sbjct: 55 FSYEKEFWQKD-QLVAGVDEVGRGPLAGPVVTAAVILPHDFDLIDVNDSKKLSPKKRQAL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + KI A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++ L Sbjct: 114 FPKILEKAVSVSVGLANNDLIDQINIYEADRVAMAHAVQGLKVKPDALLVD--AMNVPLN 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ Sbjct: 172 IPQVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGELYPEYDFKHNAGYGTREHMEALKK 231 Query: 191 KGPSCIHRLTFRPL 204 GP+ IHR +F P+ Sbjct: 232 YGPTPIHRRSFAPV 245 >gi|222528967|ref|YP_002572849.1| ribonuclease HII [Caldicellulosiruptor bescii DSM 6725] gi|254807963|sp|B9MQX2|RNH2_ANATD RecName: Full=Ribonuclease HII; Short=RNase HII gi|222455814|gb|ACM60076.1| Ribonuclease H [Caldicellulosiruptor bescii DSM 6725] Length = 206 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 85/198 (42%), Positives = 126/198 (63%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG IP Sbjct: 70 FEEIIKESIAYSVAMVDSKVIDEININNATFLAMKNAIENLKIEPDIVLVDGYKIPNLGF 129 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 130 -NQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQK 188 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNIL 204 >gi|329121228|ref|ZP_08249855.1| ribonuclease HII [Dialister micraerophilus DSM 19965] gi|327470162|gb|EGF15625.1| ribonuclease HII [Dialister micraerophilus DSM 19965] Length = 264 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 129/199 (64%), Gaps = 3/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + +E+ ++ + V GIDEVGRG LAGPV VAA+IL P+ +NDSKK+S +KRE + Sbjct: 56 YAVESEFYKQGIQYVVGIDEVGRGPLAGPVTVAAVILKPHWFIENLNDSKKVSKEKREII 115 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +K+ A ISI+ S + ID NI++AT+ A+Y AV+ L++ P++ ++D ++P Sbjct: 116 SKKVHEEALAISITDLSVEEIDTLNIYQATMLAMYQAVKKLEIKPQAVIVD--AMPLHFQ 173 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++I GDS S S+AAASI+AKV RD +M K YP Y F+ + GY T KH + I E Sbjct: 174 VPCKSLIHGDSKSASVAAASIVAKVHRDHIMDEYAKIYPGYDFEDNKGYGTKKHMEAIYE 233 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + IHR ++ P++++ + Sbjct: 234 LGITPIHRKSYEPVKSIVL 252 >gi|301630622|ref|XP_002944415.1| PREDICTED: lipid-A-disaccharide synthase-like [Xenopus (Silurana) tropicalis] Length = 550 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DE GRG LAGPVV AA+ILD G+ DSKK+S +RE L+++I + A S Sbjct: 369 GLIAGVDEAGRGPLAGPVVAAAVILDAQRPIAGLADSKKLSPARREALFDEIHAHALCCS 428 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID+ NI +ATL A+ AV+ L++ P LIDG +P A A++KGD+ Sbjct: 429 IAEASVEEIDRLNILQATLLAMRRAVQGLRLQPAMVLIDGNRLPVLD-VPAEAIVKGDAR 487 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR H++YP YGF +H GY TA H ++ G HR TF Sbjct: 488 VPAISAASILAKVQRDRWCMQLHERYPQYGFATHKGYGTAAHIAALRAHGACPEHRRTFA 547 Query: 203 PLR 205 P++ Sbjct: 548 PVK 550 >gi|312959406|ref|ZP_07773923.1| ribonuclease HII [Pseudomonas fluorescens WH6] gi|311286123|gb|EFQ64687.1| ribonuclease HII [Pseudomonas fluorescens WH6] Length = 210 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 88/191 (46%), Positives = 118/191 (61%), Gaps = 2/191 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + + VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ +RE+LY++I Sbjct: 10 SLVAQAHELVAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEARREKLYDEIC 69 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A I+ A + ID+ NI AT+ A+ AVE L + P+ A+IDG P+ + A Sbjct: 70 EKALSWHIARAEVEEIDQLNILHATMLAMQRAVEGLHITPKMAMIDGNRCPKLAM-PSEA 128 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ Sbjct: 129 VVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTP 188 Query: 196 IHRLTFRPLRN 206 IHR +F P+R Sbjct: 189 IHRRSFAPVRQ 199 >gi|261253714|ref|ZP_05946287.1| ribonuclease HII [Vibrio orientalis CIP 102891] gi|260937105|gb|EEX93094.1| ribonuclease HII [Vibrio orientalis CIP 102891] Length = 205 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 89/200 (44%), Positives = 119/200 (59%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 7 ELPPFEY-----PQGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 61 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A S+ S + ID+ NI +AT+ A+ A++ L V P LIDG P Sbjct: 62 RLALLPEIKQKALAWSVGRCSPEEIDQLNILQATMVAMQRAIDGLNVKPDLTLIDGNRCP 121 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E + AV+KGD I+AASIIAKV RD+ M K++P++GF H GYPT H + Sbjct: 122 ELSM-DSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKQHPEFGFAKHKGYPTKAHFE 180 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 181 AIEQHGVIEQHRKSFKPVKR 200 >gi|331081970|ref|ZP_08331098.1| hypothetical protein HMPREF0992_00022 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405565|gb|EGG85095.1| hypothetical protein HMPREF0992_00022 [Lachnospiraceae bacterium 6_1_63FAA] Length = 256 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 90/197 (45%), Positives = 125/197 (63%), Gaps = 6/197 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + GIDEVGRG AGPVV A+IL P+ +NDSK++S K RE+LY Sbjct: 60 EFEREYEHLGY--ICGIDEVGRGPFAGPVVAGAVILPPDCEILYVNDSKQLSEKMREQLY 117 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ +++ AS Q ID+ NI +AT +A+ AV L V P+ L D +IP+ Sbjct: 118 DEIMEKAVSVAVGYASPQRIDEINILQATYEAMREAVSKLAVTPQILLNDAVTIPQIT-I 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKVTRDRLMR K P+YGF S+ GY + +H + IK+ Sbjct: 177 PQVPIIKGDAKSISIAAASIVAKVTRDRLMREYDKIMPEYGFASNKGYGSKEHIEAIKKY 236 Query: 192 GPSCIHRLTFRPLRNLS 208 GP+ IHR +F + N++ Sbjct: 237 GPTPIHRRSF--IHNVT 251 >gi|146281925|ref|YP_001172078.1| ribonuclease HII [Pseudomonas stutzeri A1501] gi|166226642|sp|A4VJT5|RNH2_PSEU5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|145570130|gb|ABP79236.1| ribonuclease HII [Pseudomonas stutzeri A1501] gi|327480168|gb|AEA83478.1| ribonuclease HII [Pseudomonas stutzeri DSM 4166] Length = 212 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG L GPVV AA+ILDP G+NDSKK++ +RE L+++I A+ Sbjct: 12 ELVAGVDEVGRGPLCGPVVTAAVILDPARPIEGLNDSKKLTEARREALFDEIREKAVAWC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ + VI+GD+ Sbjct: 72 IARAEVEEIDQLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPQLA-VPSAPVIQGDAQ 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M+ YP YG H GYPT H + ++ GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMQALDLCYPGYGLAGHKGYPTPSHLEALRRLGPTPIHRRSFA 190 Query: 203 PLRNLS 208 P+R + Sbjct: 191 PVRAML 196 >gi|312865274|ref|ZP_07725502.1| ribonuclease HII [Streptococcus downei F0415] gi|311099385|gb|EFQ57601.1| ribonuclease HII [Streptococcus downei F0415] Length = 255 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDEVGRG LAGPVV AA+IL + G+NDSKKI K+ + Sbjct: 58 LAYEKALYADGLELIAGIDEVGRGPLAGPVVAAAVILPKDCKIKGLNDSKKIPKKRHGLI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y ++ A + I S++ ID NI++AT A+ AV L + P+ LID ++ DL Sbjct: 118 YNQVMDQALAVGIGLKSNEVIDHVNIYEATKLAMLEAVGQLALRPQHLLID--AMDLDLE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRDRLM +K+P Y F + GY T H + +K+ Sbjct: 176 IPQTSIIKGDASSLSIAAASIVAKVTRDRLMADYDEKFPGYDFSHNAGYGTKSHLEGLKK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G S IHR +F P++++ Sbjct: 236 WGVSPIHRRSFEPVKSM 252 >gi|169335925|ref|ZP_02863118.1| hypothetical protein ANASTE_02360 [Anaerofustis stercorihominis DSM 17244] gi|169258663|gb|EDS72629.1| hypothetical protein ANASTE_02360 [Anaerofustis stercorihominis DSM 17244] Length = 379 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 87/190 (45%), Positives = 114/190 (60%), Gaps = 3/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ +AGIDEVGRG LAGPVV AA++L + INDSKK+S +KREEL Sbjct: 65 AFENSLHDEGYKYIAGIDEVGRGPLAGPVVTAAVMLPKESNILYINDSKKLSSQKREELA 124 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 EKI AI +I + IDK NI AT +A+ AV+NL++ P LID + D Sbjct: 125 EKIKEEAISYAIGIKDNGIIDKINILNATKEAMLEAVDNLKIKPEILLIDAVHLNTD--I 182 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + + +KGD SI AASI+AKV RD+LM K YP+YGF+ + GY T H + IK Sbjct: 183 KQESFVKGDENIYSIGAASILAKVYRDKLMEDYAKDYPEYGFEKNKGYGTFDHIEAIKNN 242 Query: 192 GPSCIHRLTF 201 G IHR +F Sbjct: 243 GLCPIHRSSF 252 >gi|148826326|ref|YP_001291079.1| ribonuclease HII [Haemophilus influenzae PittEE] gi|166225190|sp|A5UD45|RNH2_HAEIE RecName: Full=Ribonuclease HII; Short=RNase HII gi|148716486|gb|ABQ98696.1| ribonuclease HII [Haemophilus influenzae PittEE] Length = 197 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I Sbjct: 4 YPQGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+ Sbjct: 64 ALAWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSIVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|312878029|ref|ZP_07737967.1| Ribonuclease H [Caldicellulosiruptor lactoaceticus 6A] gi|311795181|gb|EFR11572.1| Ribonuclease H [Caldicellulosiruptor lactoaceticus 6A] Length = 206 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 83/198 (41%), Positives = 126/198 (63%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG +L Sbjct: 70 FDEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDG-YEIPNLS 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 129 FNQMAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPVYKFEKHKGYGTKEHIEILQK 188 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNIL 204 >gi|227529208|ref|ZP_03959257.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540] gi|227350883|gb|EEJ41174.1| ribonuclease H [Lactobacillus vaginalis ATCC 49540] Length = 260 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 69/193 (35%), Positives = 97/193 (50%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E ++ VAG+DEVGRG LAGPVV A+IL P G+ DSK+++ +RE L Sbjct: 63 FKFEKQYWQQGCQYVAGMDEVGRGPLAGPVVTCAVILSPEFDLIGVTDSKQLTRHERENL 122 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 Y +I + AI + + A +LI L Sbjct: 123 YLQIVNEAIEVSIAVNDSQKIDQLNIYAATQNAMMTSVRQLHHQPESLIVDAVPLPALDI 182 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD S+S+AAASI+AK RD LMR + YP Y F ++GY T KH +++ Sbjct: 183 PQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDRIYPGYDFAENMGYGTKKHLAGLRKL 242 Query: 192 GPSCIHRLTFRPL 204 G + IHR +F P+ Sbjct: 243 GATPIHRRSFNPV 255 >gi|306825207|ref|ZP_07458549.1| ribonuclease HII [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432643|gb|EFM35617.1| ribonuclease HII [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 259 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + ++ + +AG+DEVGRG LAGPVV AA+IL G+NDSKKI KK E+ Sbjct: 58 LSYEKELYKQGLTLIAGVDEVGRGPLAGPVVAAAVILPKKCKIRGLNDSKKIPKKKHLEI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ + A I I + ID+ NI++AT A+ A+ L P LID + +LP Sbjct: 118 YQAVQDQALAIGIGIKDNHIIDQVNIYEATKLAMKEAISQLSPQPEHLLIDAMKL--ELP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ SLSIAAASI+AKVTRD +M+ +YP Y F ++ GY TAKH + +++ Sbjct: 176 ISQTAIIKGDANSLSIAAASIVAKVTRDNIMKDYDNQYPGYDFRANAGYGTAKHLEGLEK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR +F P++ L Sbjct: 236 LGVTQIHRTSFEPVKTL 252 >gi|315222958|ref|ZP_07864837.1| ribonuclease HII [Streptococcus anginosus F0211] gi|315187908|gb|EFU21644.1| ribonuclease HII [Streptococcus anginosus F0211] Length = 260 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 92/198 (46%), Positives = 124/198 (62%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI KK EE+ Sbjct: 58 LRYEKELYATGCQYIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKKHEEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + I +Q IDK NI++AT A+ AV NL++ P+ LID ++ D+ Sbjct: 118 YQEVLKQAVAVGIGVKDNQVIDKVNIYEATKLAMLEAVGNLEISPQHLLID--AMQLDVQ 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRDR+M YP Y F +VGY T H +K Sbjct: 176 VSQTSIIKGDANSLSIAAASIVAKVTRDRMMTDYELTYPGYDFTHNVGYGTQHHLDGLKR 235 Query: 191 KGPSCIHRLTFRPLRNLS 208 KG + IHR TF P++++ Sbjct: 236 KGITPIHRKTFEPIKSML 253 >gi|325686018|gb|EGD28077.1| ribonuclease HII [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 256 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E K VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR L Sbjct: 56 FSYEKDFWAKG-QLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLVL 114 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI A+ + + ++ ID+ NI++A A+ AVE L P + L+D ++P D Sbjct: 115 YPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + +++ Sbjct: 173 LPQLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRK 232 Query: 191 KGPSCIHRLTFRPLRNL 207 GP+ IHRLTF P+ + Sbjct: 233 YGPTPIHRLTFSPVSEM 249 >gi|260775272|ref|ZP_05884169.1| ribonuclease HII [Vibrio coralliilyticus ATCC BAA-450] gi|260608453|gb|EEX34618.1| ribonuclease HII [Vibrio coralliilyticus ATCC BAA-450] Length = 205 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 120/200 (60%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK++ KK Sbjct: 7 ELPPFEY-----PQGYRLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEKK 61 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A S+ S + ID+ NI +AT+ A+ A+E L+V P ALIDG +P Sbjct: 62 RLALLPEIKEKALAWSVGRCSPEEIDQLNILQATMVAMQRAIEGLEVAPDFALIDGNRVP 121 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + A AV+KGD I+AASIIAKV RD+ M K +P +GF H GYPT H + Sbjct: 122 QLNM-DAQAVVKGDMRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFE 180 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 181 AIEQHGVIDQHRKSFKPVKK 200 >gi|313123917|ref|YP_004034176.1| ribonuclease hii [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280480|gb|ADQ61199.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 256 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E K VAG+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR L Sbjct: 56 FSYEKDFWAKG-QLVAGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLTL 114 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI A+ + + ++ ID+ NI++A A+ AVE L P + L+D ++P D Sbjct: 115 YPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + +++ Sbjct: 173 LPQLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRK 232 Query: 191 KGPSCIHRLTFRPLRNL 207 GP+ IHRLTF P+ + Sbjct: 233 YGPTPIHRLTFSPVSEM 249 >gi|148828223|ref|YP_001292976.1| ribonuclease HII [Haemophilus influenzae PittGG] gi|166225191|sp|A5UII7|RNH2_HAEIG RecName: Full=Ribonuclease HII; Short=RNase HII gi|148719465|gb|ABR00593.1| ribonuclease HII [Haemophilus influenzae PittGG] Length = 197 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L ++I Sbjct: 4 YPQGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALADEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+ Sbjct: 64 ALAWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSIVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|172057903|ref|YP_001814363.1| ribonuclease H [Exiguobacterium sibiricum 255-15] gi|171990424|gb|ACB61346.1| Ribonuclease H [Exiguobacterium sibiricum 255-15] Length = 250 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 78/191 (40%), Positives = 111/191 (58%), Gaps = 4/191 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E R + +AG+DEVGRG LAGPVV AA+IL G+ DSK++S K+R Y+ Sbjct: 60 FEDRYRAQGHQRIAGVDEVGRGPLAGPVVAAAVILPAGFYHPGLTDSKQMSKKQRSAAYQ 119 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A ++I + ID+ NI++A+ A+ AV + ++ D+ Sbjct: 120 HIQEVAEVAIGIIEPEEIDRINIYQASKQAMQQAV----AQLTPDALLVDAMTLDVDLPQ 175 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SIAAAS+IAK TRD +M YP+YGFD H GY TA+H Q + G Sbjct: 176 ESLIKGDARSVSIAAASVIAKETRDTMMEQYAVLYPEYGFDQHAGYGTAQHLQALDRVGV 235 Query: 194 SCIHRLTFRPL 204 + IHR TF+P+ Sbjct: 236 TPIHRKTFKPV 246 >gi|223933031|ref|ZP_03625025.1| Ribonuclease H [Streptococcus suis 89/1591] gi|302023800|ref|ZP_07249011.1| ribonuclease HII [Streptococcus suis 05HAS68] gi|330832827|ref|YP_004401652.1| ribonuclease HII [Streptococcus suis ST3] gi|223898348|gb|EEF64715.1| Ribonuclease H [Streptococcus suis 89/1591] gi|329307050|gb|AEB81466.1| ribonuclease HII [Streptococcus suis ST3] Length = 259 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + E + +AGIDEVGRG LAGPVV AA+IL +NDSKKI K E + Sbjct: 58 LFYEKNLYENGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRYLNDSKKIPKSKHEAI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + + ID+ NI++AT A+ A L P LID + D P Sbjct: 118 YQEVMERAVAVGVGIKDAAVIDQVNIYEATKLAMLEAFGKLSQKPDHLLIDAMKL--DTP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M K++ YGF + GY TA+H + + + Sbjct: 176 IPQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGFAKNAGYGTAEHLEGLNK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 LGITPIHRKTFEPIKSM 252 >gi|312793164|ref|YP_004026087.1| ribonuclease h [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180304|gb|ADQ40474.1| Ribonuclease H [Caldicellulosiruptor kristjanssonii 177R1B] Length = 206 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 83/198 (41%), Positives = 126/198 (63%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKKIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG +L Sbjct: 70 FDEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDG-YEIPNLS 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 129 FNQMAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPVYKFEKHKGYGTKEHIEILQK 188 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNIL 204 >gi|293390804|ref|ZP_06635138.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951338|gb|EFE01457.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1] Length = 199 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 114/191 (59%), Gaps = 1/191 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP G+ DSK +S KKR L E+I Sbjct: 6 YPQGYELIAGVDEVGRGPLVGAVVTAAVILDPKQTIEGLADSKTLSEKKRLLLAEEIKQK 65 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI A++ A+ A+++L++ P L+DG IP +L A AV+ Sbjct: 66 ALAWALGRAEPHEIDELNILHASMLAMERAIKHLKIQPHFVLVDGNRIPPNLMIPAQAVV 125 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD++ I+AASI+AKV RD+ M KKYP Y F H GYPT H + ++E G + Sbjct: 126 KGDALVPEISAASILAKVARDQEMIELDKKYPPYEFAKHKGYPTKLHLEKLREFGVLPEY 185 Query: 198 RLTFRPLRNLS 208 R +F P++ L Sbjct: 186 RRSFAPVKKLL 196 >gi|157692285|ref|YP_001486747.1| ribonuclease HII [Bacillus pumilus SAFR-032] gi|189043566|sp|A8FD70|RNH2_BACP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157681043|gb|ABV62187.1| ribonuclease HII [Bacillus pumilus SAFR-032] Length = 254 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 117/196 (59%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + + +AGIDE GRG LAGPVV AA+IL + + G+NDSK++S KKR Sbjct: 58 LQFENNAKAQGYTCIAGIDEAGRGPLAGPVVAAAVILKDDTVLLGLNDSKQLSEKKRLAY 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A I I ID+ NI++A+ A+ AVE L P LID ++ LP Sbjct: 118 YDLIQKEALDIGIGIVDAATIDEINIYEASRLAMVRAVEQLAHTPDYLLID--AMTLPLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAA + IAKVTRD++M ++YP+Y F+ H GY T +H I+ Sbjct: 176 IHQENIIKGDAKSASIAAGACIAKVTRDQMMEEYGRQYPEYQFEKHKGYGTKEHLAAIQT 235 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHRL+F P+++ Sbjct: 236 HGAAPIHRLSFAPVKS 251 >gi|301169801|emb|CBW29405.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae 10810] Length = 197 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I Sbjct: 4 YPQGYELIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+ Sbjct: 64 ALAWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSIVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|229843904|ref|ZP_04464045.1| ribonuclease HII [Haemophilus influenzae 6P18H1] gi|229812898|gb|EEP48586.1| ribonuclease HII [Haemophilus influenzae 6P18H1] Length = 197 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 85/189 (44%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I Sbjct: 4 YPQGYELIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+ Sbjct: 64 ALAWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSLVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|145627984|ref|ZP_01783785.1| lipid-A-disaccharide synthase [Haemophilus influenzae 22.1-21] gi|144979759|gb|EDJ89418.1| lipid-A-disaccharide synthase [Haemophilus influenzae 22.1-21] Length = 585 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I Sbjct: 392 YPQGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEK 451 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+ Sbjct: 452 ALAWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVV 511 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 512 KGDSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQH 571 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 572 RRSFAPVKK 580 >gi|145638129|ref|ZP_01793739.1| ribonuclease HII [Haemophilus influenzae PittII] gi|145272458|gb|EDK12365.1| ribonuclease HII [Haemophilus influenzae PittII] gi|309751294|gb|ADO81278.1| Ribonuclease HII [Haemophilus influenzae R2866] Length = 197 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I Sbjct: 4 YPQGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+ Sbjct: 64 ALAWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAEFGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|227893503|ref|ZP_04011308.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047] gi|227864673|gb|EEJ72094.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047] Length = 250 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 120/196 (61%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +KN V G+DEVGRG LAGPVV AA+I+D + +NDSKK+S ++R +L Sbjct: 55 FSYEKEFWQKN-QCVGGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPERRLKL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI A+ + I S ID+ NI++A A+ AV L + P + L+D + D Sbjct: 114 YPKILEEAVSVGIGVKSPAVIDQINIYEADRQAMAQAVRALNIKPDALLVDAMDVSVD-- 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD+LM K YP YGF ++ GY T +H + +K+ Sbjct: 172 LPQVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYAKIYPQYGFPNNAGYGTKEHIEALKK 231 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR TF P+ + Sbjct: 232 YGPTPIHRKTFAPVSD 247 >gi|309973468|gb|ADO96669.1| Ribonuclease HII [Haemophilus influenzae R2846] Length = 197 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I Sbjct: 4 YPQGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+ Sbjct: 64 ALAWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSIVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|163801793|ref|ZP_02195690.1| ribonuclease HII [Vibrio sp. AND4] gi|159174301|gb|EDP59105.1| ribonuclease HII [Vibrio sp. AND4] Length = 212 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 114/189 (60%), Gaps = 2/189 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I Sbjct: 19 YPQGYQLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEK 78 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ S + ID+ NI +AT+ A+ A+E L+V P ALIDG PE + AV+ Sbjct: 79 ALAWAVGRCSPEEIDELNILQATMVAMQRAIEGLKVQPDLALIDGNRCPELPM-DSQAVV 137 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I+AASIIAKV RD+ M K YP +GF H GYPT H + I+ G H Sbjct: 138 KGDLRVAEISAASIIAKVVRDQEMEELDKHYPQFGFAQHKGYPTKAHFEAIERHGVISQH 197 Query: 198 RLTFRPLRN 206 R +F+P++ Sbjct: 198 RKSFKPVKK 206 >gi|260437013|ref|ZP_05790829.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876] gi|292810322|gb|EFF69527.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876] Length = 210 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 117/196 (59%), Gaps = 8/196 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E + + GIDE GRG L GPVV AA+IL INDSKK+S KREE+ Sbjct: 20 FDREYKI----YGTICGIDEAGRGPLCGPVVAAAVILPDEYNILYINDSKKLSETKREEV 75 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ + S + ID+ NI +AT +A+ A+ L V P L D +IP + Sbjct: 76 YKEIDKYAVAYGVGIVSPERIDEINILQATYEAMRTAIHKLSVTPDILLNDAVTIPM-VD 134 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S SIAAASI+AKVTRD LM K YP+YGF H GY TA H + IKE Sbjct: 135 IKQVPIIKGDAKSQSIAAASIVAKVTRDHLMEEYDKLYPEYGFAKHKGYGTAAHIKAIKE 194 Query: 191 KGPSCIHRLTFRPLRN 206 GP IHR TF ++N Sbjct: 195 YGPCPIHRRTF--IKN 208 >gi|253702077|ref|YP_003023266.1| ribonuclease HII [Geobacter sp. M21] gi|259494065|sp|C6E5I4|RNH2_GEOSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|251776927|gb|ACT19508.1| Ribonuclease H [Geobacter sp. M21] Length = 230 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 94/207 (45%), Positives = 121/207 (58%), Gaps = 4/207 (1%) Query: 2 FCNSIPERP--HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59 P+ P LE + + +AGIDE GRG LAGPVV AA+IL P + G+ND Sbjct: 4 LFPDNPKSPIDLLALEGQALRRGFFRIAGIDEAGRGPLAGPVVAAAVILPPGLLLPGVND 63 Query: 60 SKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SK+++ +KREEL++ I A + + H +D+ NI +ATL A+ AV L + P Sbjct: 64 SKQLTEEKREELFDVIHREALAVGVGIGDHALVDRINILQATLSAMRDAVRALSMTPGFL 123 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 LIDG S + V KGDS+SLSIA+ASIIAKVTRDR+M +YP YGF SH G Sbjct: 124 LIDGISNIP-MNIPQRTVKKGDSLSLSIASASIIAKVTRDRMMVEYDAQYPGYGFASHKG 182 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLR 205 Y A H I E GP IHR TF ++ Sbjct: 183 YGAASHLAAIAELGPCPIHRKTFSGVK 209 >gi|251793243|ref|YP_003007971.1| ribonuclease HII [Aggregatibacter aphrophilus NJ8700] gi|247534638|gb|ACS97884.1| ribonuclease HII [Aggregatibacter aphrophilus NJ8700] Length = 195 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 84/189 (44%), Positives = 115/189 (60%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E I Sbjct: 6 YPQGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRALLAEDIKQK 65 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI A++ A+ A+++L++ P L+DG IP +L A AV+ Sbjct: 66 ALAWALGRAEPHEIDELNILHASMLAMERAIKHLKIQPHFVLVDGNRIPPNLGMPAQAVV 125 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD++ I+AASI+AKV RD+ M KKYP Y F H GYPT H + + E G + Sbjct: 126 KGDALVAEISAASILAKVARDQEMMELDKKYPQYAFAKHKGYPTKLHLEKLAEFGVLPEY 185 Query: 198 RLTFRPLRN 206 R +F P++N Sbjct: 186 RRSFAPIKN 194 >gi|312127966|ref|YP_003992840.1| ribonuclease h [Caldicellulosiruptor hydrothermalis 108] gi|311777985|gb|ADQ07471.1| Ribonuclease H [Caldicellulosiruptor hydrothermalis 108] Length = 206 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 126/198 (63%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG +L Sbjct: 70 FEEIIKESIAYSVAMVDSKIIDEININNATFLAMKNAIENLKIEPDIVLVDG-YEIPNLG 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 129 FNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQK 188 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNIL 204 >gi|260581887|ref|ZP_05849683.1| ribonuclease HII [Haemophilus influenzae NT127] gi|260095080|gb|EEW78972.1| ribonuclease HII [Haemophilus influenzae NT127] Length = 197 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 84/189 (44%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I Sbjct: 4 YPQGYELIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL + AV+ Sbjct: 64 ALAWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPSQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSLVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAELGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|302872177|ref|YP_003840813.1| Ribonuclease H [Caldicellulosiruptor obsidiansis OB47] gi|302575036|gb|ADL42827.1| Ribonuclease H [Caldicellulosiruptor obsidiansis OB47] Length = 206 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 83/198 (41%), Positives = 125/198 (63%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +I S++ + ID+ NI+ AT + +A+ENL++ P L+DG +L Sbjct: 70 FEEIIKGSIAYSVAMVDSKIIDEININNATFLVMKNAIENLKIEPDIVLVDG-YEIPNLN 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 129 FNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILQK 188 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNIL 204 >gi|268590518|ref|ZP_06124739.1| ribonuclease HII [Providencia rettgeri DSM 1131] gi|291314104|gb|EFE54557.1| ribonuclease HII [Providencia rettgeri DSM 1131] Length = 197 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKRE+L+++I A I Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIIGLADSKKLTEKKREKLFDEIQEKALCWCI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID NI AT+ A+ AV L +IP LIDG PE + AVIKGDS+ Sbjct: 70 GRAEPEEIDNINILHATMLAMQRAVAGLSIIPEYVLIDGNRCPELPM-PSQAVIKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR M K +P+YGF H GYPTA H + + + G + HR +F P Sbjct: 129 QEISAASILAKVIRDREMVELDKAFPEYGFAKHKGYPTAYHLEKLAQYGATEFHRKSFAP 188 Query: 204 LRN 206 +R Sbjct: 189 VRR 191 >gi|238853072|ref|ZP_04643464.1| ribonuclease HII [Lactobacillus gasseri 202-4] gi|238834320|gb|EEQ26565.1| ribonuclease HII [Lactobacillus gasseri 202-4] Length = 250 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 88/194 (45%), Positives = 124/194 (63%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K VAG+DEVGRG LAGPVV AA+IL N +NDSKK+S KKR+EL Sbjct: 55 FSYEKKFGQK-SQLVAGVDEVGRGPLAGPVVTAAVILPHNFDLIDVNDSKKLSPKKRKEL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + KI + A+ +S+ A++ ID+ NI++A A+ HAV+ L+V P + L+D ++ L Sbjct: 114 FPKILAKAVSVSVGLANNDVIDRINIYEADRLAMAHAVQGLKVKPDALLVD--AMNVPLN 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKV RD LM + YP+Y F + GY T +H + +K+ Sbjct: 172 IPQVKLIHGDAKSNSIAAASIVAKVFRDNLMDAYGEVYPEYDFKHNAGYGTREHMEALKK 231 Query: 191 KGPSCIHRLTFRPL 204 GP+ IHR +F P+ Sbjct: 232 YGPTPIHRRSFAPV 245 >gi|261866967|ref|YP_003254889.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412299|gb|ACX81670.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1] Length = 199 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 114/191 (59%), Gaps = 1/191 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP G+ DSK +S KKR L E+I Sbjct: 6 YPQGYELIAGVDEVGRGPLVGAVVTAAVILDPKQPIEGLADSKTLSEKKRLLLAEEIKQK 65 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI A++ A+ A+++L++ P L+DG IP +L A AV+ Sbjct: 66 ALAWALGRAEPHEIDELNILHASMLAMERAIKHLKIRPHFVLVDGNRIPPNLMIPAQAVV 125 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD + I+AASI+AKV RD+ M + KKYP Y F H GYPT H + ++E G + Sbjct: 126 KGDVLVPEISAASILAKVARDQEMIVLDKKYPHYAFAKHKGYPTKLHLEKLREFGVLPEY 185 Query: 198 RLTFRPLRNLS 208 R +F P++ L Sbjct: 186 RRSFAPVKKLL 196 >gi|114769695|ref|ZP_01447305.1| ribonuclease HII [alpha proteobacterium HTCC2255] gi|114549400|gb|EAU52282.1| ribonuclease HII [alpha proteobacterium HTCC2255] Length = 210 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 90/198 (45%), Positives = 125/198 (63%), Gaps = 1/198 (0%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 ++ +E +R + G+DEVGRG AGPV A+ILDP NIP G+NDSKK++ K+R + Sbjct: 7 NYNIENSLRPNGNEVIMGVDEVGRGPWAGPVTACAVILDPENIPPGLNDSKKLNVKQRTK 66 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L+E I +S+++S IDK NI +AT A+ ++ L + LIDG +P +LP Sbjct: 67 LFEDIMNSSLVSCVHVDVGEIDKINILQATFRAMERSISKLPIPDHI-LIDGNKLPPNLP 125 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A A+IKGDS S SIAAASIIAKVTRDRLM +YP YG++ + GY T HQ + Sbjct: 126 SPATAIIKGDSKSASIAAASIIAKVTRDRLMADLSVEYPGYGWEKNAGYGTKMHQSGLLN 185 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + HR +F+P+ N+ Sbjct: 186 NGVTPHHRRSFKPIHNML 203 >gi|308274702|emb|CBX31301.1| Ribonuclease HII [uncultured Desulfobacterium sp.] Length = 214 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 116/195 (59%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E EK +AG+DE GRG +AGPVV AA+IL + G+ DSKK++ KKR+ L Sbjct: 6 WAYELSAFEKGYNKIAGVDEAGRGPIAGPVVSAAVILPFSYPIEGVTDSKKLTPKKRDYL 65 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I A+ I I I++ NI +A+L ++ AV+NL LIDG Sbjct: 66 YNIIYERAVSIGIGIVDPAEIERINILRASLLSMSIAVQNLSPESDYLLIDGIFPIP-HT 124 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + GDS+SLS+AAASI+AKVTRDRLM H +YP+YGF H GYPT +H++ I+ Sbjct: 125 LSQQPIPHGDSLSLSVAAASIVAKVTRDRLMERYHYEYPEYGFIKHKGYPTKEHKEAIRR 184 Query: 191 KGPSCIHRLTFRPLR 205 G IHR +F+ ++ Sbjct: 185 SGCCPIHRRSFKGVK 199 >gi|268318031|ref|YP_003291750.1| Ribonuclease H [Rhodothermus marinus DSM 4252] gi|262335565|gb|ACY49362.1| Ribonuclease H [Rhodothermus marinus DSM 4252] Length = 198 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 122/196 (62%), Gaps = 5/196 (2%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 RP E ++ VAG+DEVGRG LAGPVV AA+IL P+ G+ DSK++ + Sbjct: 4 PRP----EVRCWQQGYRWVAGVDEVGRGCLAGPVVAAAVILPPHVQLDGVRDSKQLRPEV 59 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE+L E+I + A I I + + ID+ NI A L+A+ AV NL++ P LIDG Sbjct: 60 REKLAEQIRAQALAIGIGMCTPEEIDRLNILNAALEAMRRAVANLELTPDYLLIDGNRCF 119 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D PC A ++KGD SL IAAASIIAK TRD LM+ H+++P YG+D +VGYPT H + Sbjct: 120 SDPPCPAKPIVKGDQQSLLIAAASIIAKTTRDALMQQLHEEFPVYGWDRNVGYPTRTHYE 179 Query: 187 VIKEKGPSCIHRLTFR 202 + GPS HR +FR Sbjct: 180 ALARYGPSPYHRRSFR 195 >gi|315633618|ref|ZP_07888908.1| ribonuclease HII [Aggregatibacter segnis ATCC 33393] gi|315477660|gb|EFU68402.1| ribonuclease HII [Aggregatibacter segnis ATCC 33393] Length = 199 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 119/196 (60%), Gaps = 1/196 (0%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 ++ V + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E Sbjct: 1 MDKFVYPQGYALIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAE 60 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A ++ A ID+ NI A++ A+ AV++L++ P L+DG IP +L Sbjct: 61 EIKQKALAWALGRAEPHEIDELNILHASMLAMERAVKHLKIQPHFVLVDGNRIPSNLSIP 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A AV+KGD++ I+AASI+AKV RD+ M ++YP Y F H GYPT H + I E G Sbjct: 121 AQAVVKGDALVAEISAASILAKVARDQEMLELDQQYPQYAFAQHKGYPTKLHLEKIAEFG 180 Query: 193 PSCIHRLTFRPLRNLS 208 +R +F P++ L Sbjct: 181 LLPQYRRSFAPVKKLL 196 >gi|15598838|ref|NP_252332.1| ribonuclease HII [Pseudomonas aeruginosa PAO1] gi|37999786|sp|Q9HXY9|RNH2_PSEAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|9949802|gb|AAG07030.1|AE004784_3 ribonuclease HII [Pseudomonas aeruginosa PAO1] Length = 201 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 94/186 (50%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A Sbjct: 12 DLVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L VIPR ALIDG P+ V+KGDS Sbjct: 72 IARAEVEEIDRLNILHATMLAMQRAVEGLSVIPRLALIDGNRCPKLA-VPCAPVVKGDSQ 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFA 190 Query: 203 PLRNLS 208 P+R L Sbjct: 191 PVRELL 196 >gi|107103156|ref|ZP_01367074.1| hypothetical protein PaerPA_01004225 [Pseudomonas aeruginosa PACS2] gi|218890133|ref|YP_002438997.1| ribonuclease HII [Pseudomonas aeruginosa LESB58] gi|254236556|ref|ZP_04929879.1| ribonuclease HII [Pseudomonas aeruginosa C3719] gi|254242340|ref|ZP_04935662.1| ribonuclease HII [Pseudomonas aeruginosa 2192] gi|226736823|sp|B7V7U6|RNH2_PSEA8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|126168487|gb|EAZ53998.1| ribonuclease HII [Pseudomonas aeruginosa C3719] gi|126195718|gb|EAZ59781.1| ribonuclease HII [Pseudomonas aeruginosa 2192] gi|218770356|emb|CAW26121.1| ribonuclease HII [Pseudomonas aeruginosa LESB58] Length = 201 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 93/186 (50%), Positives = 117/186 (62%), Gaps = 2/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A Sbjct: 12 DLVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ V+KGDS Sbjct: 72 IARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPKLA-VPCAPVVKGDSQ 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFA 190 Query: 203 PLRNLS 208 P+R L Sbjct: 191 PVRELL 196 >gi|309807515|ref|ZP_07701472.1| ribonuclease HII [Lactobacillus iners LactinV 01V1-a] gi|308169242|gb|EFO71303.1| ribonuclease HII [Lactobacillus iners LactinV 01V1-a] Length = 250 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 123/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +N VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR EL Sbjct: 56 FSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNEL 114 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P D Sbjct: 115 FPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPID-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K+ Sbjct: 173 LPQLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGEIYPEYDFAHNAGYGTAKHLSALKQ 232 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR +F P+ + Sbjct: 233 YGPTPIHRFSFEPVSS 248 >gi|145630149|ref|ZP_01785931.1| ribonuclease HII [Haemophilus influenzae R3021] gi|144984430|gb|EDJ91853.1| ribonuclease HII [Haemophilus influenzae R3021] Length = 197 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I Sbjct: 4 YPQGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALAEEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ A+++L++ P L+DG IP+DL A AV+ Sbjct: 64 ALAWALGRAEANEIDEINILQASLLAMTRAIKSLKIQPHFVLVDGNKIPKDLAIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|299770949|ref|YP_003732975.1| ribonuclease HII [Acinetobacter sp. DR1] gi|298701037|gb|ADI91602.1| ribonuclease HII [Acinetobacter sp. DR1] Length = 188 Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 116/183 (63%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A SI Sbjct: 2 FIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIQEKALAWSI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + A++ GD+ Sbjct: 62 AEATHAEIDELNILQATFLAMQRAVDGLKAQPQKVIVDGNQIPKGIIIPCEAIVGGDASH 121 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ P Sbjct: 122 PEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIATHGVIDQHRRSYAP 181 Query: 204 LRN 206 ++ Sbjct: 182 VKR 184 >gi|148557468|ref|YP_001265050.1| ribonuclease H [Sphingomonas wittichii RW1] gi|189043662|sp|A5VF46|RNH2_SPHWW RecName: Full=Ribonuclease HII; Short=RNase HII gi|148502658|gb|ABQ70912.1| Ribonuclease H [Sphingomonas wittichii RW1] Length = 202 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 84/200 (42%), Positives = 115/200 (57%), Gaps = 5/200 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F+LE P+AG+DE GRG LAGPVV AA+ILD +P GI+DSKK+ + R Sbjct: 4 PSFDLEIAH----PLPLAGVDEAGRGPLAGPVVAAAVILDRGRVPAGIDDSKKLGAEARA 59 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +L KI A + + A+ + ID+ NI A++ A+ AV L V P L+DG P Sbjct: 60 DLCGKIREVAHVGVGIATVEEIDEINILWASMLAMERAVAALGVEPAMVLVDGNRCPR-W 118 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD++ LSIAAASI+AK RDR+M +P YG+ + GY T H + Sbjct: 119 TRPSQWVIGGDALCLSIAAASIVAKEERDRMMADYDVHHPGYGWAKNKGYGTPAHLDALA 178 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 GPS +HR +F P+ S+ Sbjct: 179 RLGPSPLHRRSFAPVAQFSL 198 >gi|322418210|ref|YP_004197433.1| Ribonuclease H [Geobacter sp. M18] gi|320124597|gb|ADW12157.1| Ribonuclease H [Geobacter sp. M18] Length = 228 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 89/205 (43%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 P LE + +AG+DE GRG LAGPVV AA+I+ + G+NDSK Sbjct: 4 LFPDNPPLDMLALEGQALRRGYCRIAGVDEAGRGPLAGPVVAAAVIIPTGVLLPGVNDSK 63 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 +++ +KREEL++ I A+ + + H +D NI +ATL A+ AV L V P LI Sbjct: 64 QLTEEKREELFDLIYREAVAVGVGIGDHALVDSINILQATLRAMSDAVRALSVAPDFILI 123 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG S + V KGDS+SLSIAAASIIAKVTRDR+M + ++ YGF SH GY Sbjct: 124 DGISSIP-MNIPQRTVKKGDSLSLSIAAASIIAKVTRDRMMVVYDTQFSGYGFASHKGYG 182 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 A H I E GP IHR +F ++ Sbjct: 183 AASHLAAIAELGPCPIHRKSFSGVK 207 >gi|303271053|ref|XP_003054888.1| ribonuclease HII [Micromonas pusilla CCMP1545] gi|226462862|gb|EEH60140.1| ribonuclease HII [Micromonas pusilla CCMP1545] Length = 256 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E M ++ V G+DE GRG LAGPVV AA + + + INDSK+++ + RE Sbjct: 46 PSRAHEQMYWDQGKKIVCGVDEAGRGPLAGPVVAAACVFPEDLVIDAINDSKQMTEEDRE 105 Query: 70 ELYEKITSSAII--SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E+YE++ + + S+ H+ ID NI +AT+ A+ +VE L L+DG +PE Sbjct: 106 EVYEQLMENPEVLKSVCVIDHKEIDDINILEATMKAMRKSVEGLPTKADWVLVDGNRVPE 165 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L +A A++KGD+ S+ IAAAS++AKVTRDR+M K++P+YGF H GY H Sbjct: 166 PLKGRAEAIVKGDAKSVCIAAASVLAKVTRDRMMVEIAKEHPEYGFAEHKGYGVKSHMAA 225 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I E GP HR+TF P++ + Sbjct: 226 IHEHGPCPYHRMTFAPMKYM 245 >gi|212710383|ref|ZP_03318511.1| hypothetical protein PROVALCAL_01443 [Providencia alcalifaciens DSM 30120] gi|212686965|gb|EEB46493.1| hypothetical protein PROVALCAL_01443 [Providencia alcalifaciens DSM 30120] Length = 196 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKRE+L+++I A I Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKREKLFDEIKEKALCWCI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AVE L + P L+DG P+ + AV+KGDS+ Sbjct: 70 GRAEPEEIDQLNILHATMLAMQRAVEGLLIKPEFVLVDGNRCPKLDM-PSQAVVKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR M K +P+YGF H GYPTA H + + E G + HR +F P Sbjct: 129 QEISAASILAKVVRDREMVELDKAFPEYGFAKHKGYPTAYHLEKLAEFGATEFHRKSFAP 188 Query: 204 LRN 206 +R Sbjct: 189 VRR 191 >gi|319776686|ref|YP_004139174.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae F3047] gi|329124205|ref|ZP_08252752.1| ribonuclease HII [Haemophilus aegyptius ATCC 11116] gi|317451277|emb|CBY87511.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae F3047] gi|327467630|gb|EGF13128.1| ribonuclease HII [Haemophilus aegyptius ATCC 11116] Length = 197 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 88/189 (46%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I Sbjct: 4 YPQGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P LIDG IP+DL A AV+ Sbjct: 64 ALAWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLIDGNKIPKDLDIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSIVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|312134790|ref|YP_004002128.1| ribonuclease h [Caldicellulosiruptor owensensis OL] gi|311774841|gb|ADQ04328.1| Ribonuclease H [Caldicellulosiruptor owensensis OL] Length = 206 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 126/198 (63%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + + + G+DE GRG LAGPV AA+++D I G+ DSKK++ KKRE+L Sbjct: 10 FEIEEKLLNEGYRFICGVDEAGRGPLAGPVFAAAVVMDRKRIIEGVRDSKKLTPKKREKL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +I S++ + ID+ NI+ AT A+ +A+ENL++ P L+DG +L Sbjct: 70 FEEIIKESIAYSVAMVDSKIIDEININNATFSAMKNAIENLKIEPDIVLVDG-YEIPNLN 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD S SIA ASI+AKV+RDR + KYP Y F+ H GY T +H +++++ Sbjct: 129 FNQRAIIKGDRKSYSIACASILAKVSRDRYIVEISSKYPLYKFEKHKGYGTKEHIEILRK 188 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR++F L+N+ Sbjct: 189 YGPCEIHRISF--LKNIL 204 >gi|160933523|ref|ZP_02080911.1| hypothetical protein CLOLEP_02369 [Clostridium leptum DSM 753] gi|156867400|gb|EDO60772.1| hypothetical protein CLOLEP_02369 [Clostridium leptum DSM 753] Length = 325 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 89/198 (44%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E K V G+DE GRG LAGPV AA+IL P G+NDSKK++ KKRE L Sbjct: 4 LLYEKEAISKGYANVCGVDEAGRGPLAGPVYAAAVILPPGLEIEGVNDSKKLTEKKREAL 63 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + +I A I+SAS + IDK NI AT A+ AVE L V ALIDG +P P Sbjct: 64 FPEIKEKALAYCIASASEKEIDKLNILNATYLAMARAVEGLPVKADYALIDGNRMPRL-P 122 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++KGD +S+SIA ASI+AKVTRD +M ++YP Y F H GY T H +I+ Sbjct: 123 IPGETIVKGDGLSMSIACASILAKVTRDHVMMEWDQRYPQYQFAKHKGYGTKLHMDLIRR 182 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP +HR +F L+ + Sbjct: 183 YGPCELHRQSF--LKKIL 198 >gi|68249618|ref|YP_248730.1| ribonuclease HII [Haemophilus influenzae 86-028NP] gi|81335953|sp|Q4QLM7|RNH2_HAEI8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|68057817|gb|AAX88070.1| ribonuclease HII [Haemophilus influenzae 86-028NP] Length = 197 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I Sbjct: 4 YPQGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLALAEEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+ Sbjct: 64 ALAWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD++ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDNLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|183597582|ref|ZP_02959075.1| hypothetical protein PROSTU_00865 [Providencia stuartii ATCC 25827] gi|188023079|gb|EDU61119.1| hypothetical protein PROSTU_00865 [Providencia stuartii ATCC 25827] Length = 197 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK++ KKRE+L+ +I A I Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPKNPIIGLTDSKKLTEKKREKLFVEIQEKALCWCI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P L+DG P + AVIKGDS+ Sbjct: 70 GRAEPEEIDEINILHATMLAMQRAVAGLSITPDFVLVDGNRCPTLSM-PSQAVIKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR M K YP+YGF H GYPTA H + + + G + HR +F P Sbjct: 129 QEISAASILAKVVRDREMVELDKAYPEYGFAKHKGYPTAYHLEKLAQFGATKFHRKSFAP 188 Query: 204 LRN 206 +R Sbjct: 189 VRR 191 >gi|319897459|ref|YP_004135656.1| ribonuclease hii, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae F3031] gi|317432965|emb|CBY81332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus influenzae F3031] Length = 197 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 85/189 (44%), Positives = 117/189 (61%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I Sbjct: 4 YPQGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+ L A A++ Sbjct: 64 ALAWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKYLDIPAQAIV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDSI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSIVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|227821031|ref|YP_002825001.1| ribonuclease HII [Sinorhizobium fredii NGR234] gi|254807983|sp|C3MHC0|RNH2_RHISN RecName: Full=Ribonuclease HII; Short=RNase HII gi|227340030|gb|ACP24248.1| ribonuclease HII [Sinorhizobium fredii NGR234] Length = 231 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 103/199 (51%), Positives = 139/199 (69%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P F E + WPVAG DE GRG LAGPVV AA+ILDP+ +P G+NDSK ++ + Sbjct: 16 PVLPDFSFEITAKRDGFWPVAGADEAGRGPLAGPVVAAAVILDPDAVPGGLNDSKLLTAE 75 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +RE L+ +I ++A +SI+S+S +ID +I KA+LDA+ A++ L + R ALIDGR +P Sbjct: 76 QREALFTEIMATATVSIASSSAAHIDATDILKASLDAMRRAIDGLSIAARFALIDGRDVP 135 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + LPC A A++KGDS S+SIAAASI+AKVTRDR+M A +P YGF H GY T +H+ Sbjct: 136 QGLPCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPAYGFALHAGYATVRHRS 195 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I GP +HR++FRP R Sbjct: 196 AIDSHGPCSLHRMSFRPFR 214 >gi|16272990|ref|NP_439217.1| ribonuclease HII [Haemophilus influenzae Rd KW20] gi|260580145|ref|ZP_05847975.1| ribonuclease HII [Haemophilus influenzae RdAW] gi|1173096|sp|P43808|RNH2_HAEIN RecName: Full=Ribonuclease HII; Short=RNase HII gi|1574610|gb|AAC22714.1| ribonuclease HII (rnhB) [Haemophilus influenzae Rd KW20] gi|260093429|gb|EEW77362.1| ribonuclease HII [Haemophilus influenzae RdAW] Length = 197 Score = 190 bits (484), Expect = 7e-47, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I Sbjct: 4 YPQGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEK 63 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P LIDG IP+DL A AV+ Sbjct: 64 ARAWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLIDGNKIPKDLAIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|329921301|ref|ZP_08277739.1| ribonuclease HII [Lactobacillus iners SPIN 1401G] gi|328934593|gb|EGG31097.1| ribonuclease HII [Lactobacillus iners SPIN 1401G] Length = 250 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 123/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +N VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR EL Sbjct: 56 FSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNEL 114 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P D Sbjct: 115 FPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K+ Sbjct: 173 LPQLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALKQ 232 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR +F P+ + Sbjct: 233 YGPTPIHRFSFEPVSS 248 >gi|325912821|ref|ZP_08175199.1| ribonuclease HII [Lactobacillus iners UPII 60-B] gi|325477814|gb|EGC80948.1| ribonuclease HII [Lactobacillus iners UPII 60-B] Length = 250 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 123/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +N VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR EL Sbjct: 56 FSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNEL 114 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P D Sbjct: 115 FPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K+ Sbjct: 173 LPQLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALKQ 232 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR +F P+ + Sbjct: 233 YGPTPIHRFSFEPVSS 248 >gi|309809305|ref|ZP_07703174.1| ribonuclease HII [Lactobacillus iners SPIN 2503V10-D] gi|325911988|ref|ZP_08174390.1| ribonuclease HII [Lactobacillus iners UPII 143-D] gi|308170418|gb|EFO72442.1| ribonuclease HII [Lactobacillus iners SPIN 2503V10-D] gi|325476173|gb|EGC79337.1| ribonuclease HII [Lactobacillus iners UPII 143-D] Length = 250 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 123/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +N VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR EL Sbjct: 56 FSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNEL 114 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P D Sbjct: 115 FPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K+ Sbjct: 173 LPQLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALKQ 232 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR +F P+ + Sbjct: 233 YGPTPIHRFSFEPVSS 248 >gi|309805705|ref|ZP_07699745.1| ribonuclease HII [Lactobacillus iners LactinV 09V1-c] gi|309806745|ref|ZP_07700739.1| ribonuclease HII [Lactobacillus iners LactinV 03V1-b] gi|312873998|ref|ZP_07734034.1| ribonuclease HII [Lactobacillus iners LEAF 2052A-d] gi|312875510|ref|ZP_07735513.1| ribonuclease HII [Lactobacillus iners LEAF 2053A-b] gi|315653520|ref|ZP_07906441.1| ribonuclease HII [Lactobacillus iners ATCC 55195] gi|308164958|gb|EFO67201.1| ribonuclease HII [Lactobacillus iners LactinV 09V1-c] gi|308166860|gb|EFO69045.1| ribonuclease HII [Lactobacillus iners LactinV 03V1-b] gi|311089021|gb|EFQ47462.1| ribonuclease HII [Lactobacillus iners LEAF 2053A-b] gi|311090547|gb|EFQ48955.1| ribonuclease HII [Lactobacillus iners LEAF 2052A-d] gi|315489211|gb|EFU78852.1| ribonuclease HII [Lactobacillus iners ATCC 55195] Length = 250 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 123/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +N VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR EL Sbjct: 56 FSYEKEFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNEL 114 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P D Sbjct: 115 FPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K+ Sbjct: 173 LPQLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALKQ 232 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR +F P+ + Sbjct: 233 YGPTPIHRFSFEPVSS 248 >gi|229174503|ref|ZP_04302035.1| Ribonuclease [Bacillus cereus MM3] gi|228609063|gb|EEK66353.1| Ribonuclease [Bacillus cereus MM3] Length = 257 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 94/194 (48%), Positives = 126/194 (64%), Gaps = 3/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +REK + +AGIDEVGRG LAGPVV AA++L N G+NDSKK+S KRE Y+ Sbjct: 62 YEIALREKGLTLIAGIDEVGRGPLAGPVVTAAVVLPENFYIPGLNDSKKLSEAKRERFYD 121 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + AI I + S Q ID+ NI++AT A+ AV NL P LID +P P Sbjct: 122 EIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCAPEHLLIDAMKLPT--PIP 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T +H I+ G Sbjct: 180 QTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGTKQHLGAIEAHG 239 Query: 193 PSCIHRLTFRPLRN 206 HR +F P+++ Sbjct: 240 VLEEHRKSFAPIKD 253 >gi|229846090|ref|ZP_04466202.1| ribonuclease HII [Haemophilus influenzae 7P49H1] gi|229811094|gb|EEP46811.1| ribonuclease HII [Haemophilus influenzae 7P49H1] Length = 197 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I Sbjct: 4 YPQGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+ Sbjct: 64 ALAWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|84389778|ref|ZP_00991330.1| ribonuclease HII [Vibrio splendidus 12B01] gi|84376879|gb|EAP93753.1| ribonuclease HII [Vibrio splendidus 12B01] Length = 206 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 89/202 (44%), Positives = 120/202 (59%), Gaps = 7/202 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 8 ELPPFEY-----PQGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 62 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L+ +I A S+ S Q ID+ NI +AT+ A+ A+ L V P ALIDG +P Sbjct: 63 RLALFPEIKEKALAWSVGRCSPQEIDEWNILQATMVAMQRAIAGLSVQPDMALIDGNRVP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E A++KGD I+AASIIAKV RD+ M K +P++GF H GYPT H + Sbjct: 123 ELPM-DGLAIVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAQHKGYPTKAHFE 181 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 I++ G + +R +F+P++ + Sbjct: 182 AIEKHGVTEHYRKSFKPVKRIL 203 >gi|288553081|ref|YP_003425016.1| ribonuclease H [Bacillus pseudofirmus OF4] gi|288544241|gb|ADC48124.1| ribonuclease H [Bacillus pseudofirmus OF4] Length = 260 Score = 190 bits (483), Expect = 8e-47, Method: Composition-based stats. Identities = 79/194 (40%), Positives = 107/194 (55%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + VAG+DEVGRG LAGPV AA+IL + G+ DSKK+S +KRE Sbjct: 60 LMHEREAWQNGYNYVAGLDEVGRGPLAGPVTAAAVILPKDASLPGLTDSKKLSKEKREFF 119 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E+I A S+ ID+ NI++AT A+ AV NL + P L+D + Sbjct: 120 VEEIKKQALAYSVVFVDADEIDRVNIYEATKLAMQRAVNNLDIQPDYLLLDAMKLA--NS 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD SL+IAA+S++AKV RD M K YP YGF HVGY T H + + Sbjct: 178 LPQESLIKGDQKSLTIAASSVLAKVARDEYMVELEKVYPGYGFAKHVGYGTEVHLKAMNA 237 Query: 191 KGPSCIHRLTFRPL 204 G + HR +F+P+ Sbjct: 238 LGITKEHRKSFKPV 251 >gi|315640709|ref|ZP_07895811.1| ribonuclease HII [Enterococcus italicus DSM 15952] gi|315483464|gb|EFU73958.1| ribonuclease HII [Enterococcus italicus DSM 15952] Length = 255 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 118/195 (60%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + K VAGIDEVGRG LAGPVV AA+IL P G+NDSK++ +RE L+ Sbjct: 61 EFEKIAWSKGAQAVAGIDEVGRGPLAGPVVAAAVILPPARQFLGLNDSKQVPEAQREALF 120 Query: 73 EKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I+ AI Q ID+ NI++A+ A+ A+E+L LID ++ + Sbjct: 121 QAISEQAIAIGIGIISPQCIDEVNIYEASKLAMMEAIEHLSTPADYLLID--AMTLPINL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAASIIAKVTRDR+M+ +YP Y F+ + GY TAKH +K Sbjct: 179 PQEKLIKGDARSNSIAAASIIAKVTRDRMMKQYAIEYPGYDFEHNAGYGTAKHLAGLKAN 238 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR +F P++N Sbjct: 239 GITPIHRKSFAPVKN 253 >gi|91223487|ref|ZP_01258752.1| ribonuclease HII [Vibrio alginolyticus 12G01] gi|269966265|ref|ZP_06180354.1| ribonuclease HII [Vibrio alginolyticus 40B] gi|91191573|gb|EAS77837.1| ribonuclease HII [Vibrio alginolyticus 12G01] gi|269829180|gb|EEZ83425.1| ribonuclease HII [Vibrio alginolyticus 40B] Length = 211 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 91/200 (45%), Positives = 117/200 (58%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK++ KK Sbjct: 13 ELPPFEY-----PQGYQLVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEKK 67 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A ++ S + ID+ NI +AT+ A+ AV LQV P LIDG P Sbjct: 68 RMALLPEIKEKALAWAVGRCSPEEIDQLNILQATMVAMQRAVAGLQVQPDLVLIDGNRCP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E A AV+KGD I+AASIIAKV RD+ M K +P +GF H GYPT H + Sbjct: 128 ELPM-DAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFE 186 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206 >gi|27365221|ref|NP_760749.1| ribonuclease HII [Vibrio vulnificus CMCP6] gi|37680727|ref|NP_935336.1| ribonuclease HII [Vibrio vulnificus YJ016] gi|320155606|ref|YP_004187985.1| ribonuclease HII [Vibrio vulnificus MO6-24/O] gi|29611847|sp|Q8DBE7|RNH2_VIBVU RecName: Full=Ribonuclease HII; Short=RNase HII gi|39932256|sp|Q7MIH3|RNH2_VIBVY RecName: Full=Ribonuclease HII; Short=RNase HII gi|27361368|gb|AAO10276.1| Ribonuclease HII [Vibrio vulnificus CMCP6] gi|37199476|dbj|BAC95307.1| ribonuclease HII [Vibrio vulnificus YJ016] gi|319930918|gb|ADV85782.1| ribonuclease HII [Vibrio vulnificus MO6-24/O] Length = 207 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 116/200 (58%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 8 ELPPFEY-----PQGYHCIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 62 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A ++ S + ID+ NI +AT+ A+ AVE L V P LIDG P Sbjct: 63 RLALLPEIQEKALAWAVGRCSPEEIDQLNILQATMVAMQRAVEGLAVKPDLVLIDGNRCP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPT H Sbjct: 123 ALPM-DSQAVVKGDLRVAQISAASIIAKVVRDQEMEELDKQYPQFGFAQHKGYPTKAHFD 181 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 182 AIEKHGVIEQHRKSFKPVKK 201 >gi|229824939|ref|ZP_04451008.1| hypothetical protein GCWU000182_00288 [Abiotrophia defectiva ATCC 49176] gi|229790942|gb|EEP27056.1| hypothetical protein GCWU000182_00288 [Abiotrophia defectiva ATCC 49176] Length = 255 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 88/189 (46%), Positives = 111/189 (58%), Gaps = 3/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E + GIDEVGRG LAGPVV AA+I + I +NDSKK++ KREEL+ Sbjct: 62 FERQFCENGY--ICGIDEVGRGPLAGPVVAAAVIFPKDLIIPYVNDSKKLTEAKREELFN 119 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI + S + ID+ NI ++T +A+ AV L V P L+DG +L Sbjct: 120 HIMCEAISVGFGSVDNSRIDEINILQSTFEAMRKAVSELNVKPDIILVDGDKKIPELDIS 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++ GD+ SLSIAAASI+AKV RDR M+ KYP Y F S+ GY + KH IKE G Sbjct: 180 QQAIVGGDAKSLSIAAASIVAKVVRDRYMKEMDIKYPMYDFASNKGYGSKKHLTGIKEFG 239 Query: 193 PSCIHRLTF 201 S IHR TF Sbjct: 240 ISPIHRKTF 248 >gi|309804177|ref|ZP_07698255.1| ribonuclease HII [Lactobacillus iners LactinV 11V1-d] gi|308163760|gb|EFO66029.1| ribonuclease HII [Lactobacillus iners LactinV 11V1-d] Length = 250 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 123/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +N VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR EL Sbjct: 56 FSYEKKFWCQN-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNEL 114 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P D Sbjct: 115 FPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K+ Sbjct: 173 LPQLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALKQ 232 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR +F P+ + Sbjct: 233 YGPTPIHRFSFEPVSS 248 >gi|145632423|ref|ZP_01788158.1| ribonuclease HII [Haemophilus influenzae 3655] gi|144987330|gb|EDJ93860.1| ribonuclease HII [Haemophilus influenzae 3655] Length = 197 Score = 190 bits (483), Expect = 9e-47, Method: Composition-based stats. Identities = 85/189 (44%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L ++I Sbjct: 4 YPQGYELIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALADEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+ Sbjct: 64 ALAWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|85860168|ref|YP_462370.1| ribonuclease HII [Syntrophus aciditrophicus SB] gi|97189377|sp|Q2LVU5|RNH2_SYNAS RecName: Full=Ribonuclease HII; Short=RNase HII gi|85723259|gb|ABC78202.1| ribonuclease HII [Syntrophus aciditrophicus SB] Length = 212 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 82/194 (42%), Positives = 116/194 (59%), Gaps = 3/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E +AG+DE GRG LAGPVV AA+IL I DSKK+S KRE+LYE Sbjct: 7 FEREAYEDGYRVIAGVDEAGRGPLAGPVVAAAVILPHGYSHPEITDSKKLSAGKREKLYE 66 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A I + ID+ NI +ATL A+ AV++L + P L+DG Sbjct: 67 VIKRDALAIGVGVVESPVIDQVNILRATLRAMAEAVDDLSIRPDFLLVDGLHRIFL-NIS 125 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGD++S+SIA+ASIIAKV+RDR+M I H+++P Y F + GY T +H++ I+ G Sbjct: 126 QKTIVKGDTLSVSIASASIIAKVSRDRIMEIYHRQFPQYNFLKNKGYGTREHREAIQNFG 185 Query: 193 PSCIHRLTFRPLRN 206 IHR +F+ +++ Sbjct: 186 FCKIHRRSFK-VKS 198 >gi|49082728|gb|AAT50764.1| PA3642 [synthetic construct] Length = 202 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 93/186 (50%), Positives = 117/186 (62%), Gaps = 2/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A Sbjct: 12 DLVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L IPR ALIDG P+ V+KGDS Sbjct: 72 IARAEVEEIDRLNILHATMLAMQRAVEGLSAIPRLALIDGNRCPKLA-VPCAPVVKGDSQ 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFA 190 Query: 203 PLRNLS 208 P+R L Sbjct: 191 PVRELL 196 >gi|49475220|ref|YP_033261.1| ribonuclease HII [Bartonella henselae str. Houston-1] gi|81648141|sp|Q6G4E3|RNH2_BARHE RecName: Full=Ribonuclease HII; Short=RNase HII gi|49238025|emb|CAF27232.1| Ribonuclease HII [Bartonella henselae str. Houston-1] Length = 223 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 103/204 (50%), Positives = 140/204 (68%), Gaps = 2/204 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++P +P+F E ++++ +AG+DEVGRG LAGPVV AA+ILD N IP G+NDSKK+S Sbjct: 13 NLPFKPNFACELDLQKQGFLYIAGVDEVGRGPLAGPVVTAAVILDKNRIPDGLNDSKKLS 72 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R ELY +I SA ISI+S + ID+ +I KATL+A+ + L V AL+DGR Sbjct: 73 AQRRYELYHEILQSALAISIASLCARTIDQSDIRKATLEAMRRCIRGLAVPAHYALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP LPC A A+IKGD S+SIAAASIIAKVTRD++M A + Y YG + HVGY T Sbjct: 133 DIPFQLPCPATALIKGDQRSVSIAAASIIAKVTRDQMMECAGQVYKGYGLEKHVGYATLA 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLRN 206 H+ +++ GP +HR +F PL+ Sbjct: 193 HRAALEKYGPVVGLHRYSFAPLKK 216 >gi|116051639|ref|YP_789522.1| ribonuclease HII [Pseudomonas aeruginosa UCBPP-PA14] gi|296387853|ref|ZP_06877328.1| ribonuclease HII [Pseudomonas aeruginosa PAb1] gi|313109047|ref|ZP_07795019.1| ribonuclease HII [Pseudomonas aeruginosa 39016] gi|122260782|sp|Q02RB4|RNH2_PSEAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|115586860|gb|ABJ12875.1| ribonuclease HII [Pseudomonas aeruginosa UCBPP-PA14] gi|310881521|gb|EFQ40115.1| ribonuclease HII [Pseudomonas aeruginosa 39016] Length = 201 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 93/186 (50%), Positives = 118/186 (63%), Gaps = 2/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A Sbjct: 12 DLVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ + V+KGDS Sbjct: 72 IARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPKLA-VPSAPVVKGDSQ 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMVELDRVYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFA 190 Query: 203 PLRNLS 208 P+R L Sbjct: 191 PVRELL 196 >gi|297620937|ref|YP_003709074.1| Ribonuclease HII [Waddlia chondrophila WSU 86-1044] gi|297376238|gb|ADI38068.1| Ribonuclease HII [Waddlia chondrophila WSU 86-1044] Length = 254 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 84/200 (42%), Positives = 113/200 (56%), Gaps = 4/200 (2%) Query: 11 HFE-LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 F E R AGIDE GRG LAGPVV +A IL G+NDSKK++ +R+ Sbjct: 55 DFSHYENEARRMGYSHPAGIDEAGRGPLAGPVVASACILPAGYHLSGLNDSKKLTPLQRK 114 Query: 70 ELYEKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 +E +T + I I A+H+ ID N+ +AT A+ AV+ L+ P LID + Sbjct: 115 RFFEVLTQDPNVCIGIGIATHEEIDTVNVLEATKLAMCKAVDMLKPQPDFLLIDAVKLS- 173 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + P +IKGD +IAAAS+IAK TRDR+M K+P YGF H GY T H++ Sbjct: 174 EQPIPFLNLIKGDCRVQAIAAASVIAKETRDRIMDEYDVKWPMYGFGRHKGYGTEAHREA 233 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 IK GP IHR TF P++++ Sbjct: 234 IKRHGPCPIHRKTFEPIKSM 253 >gi|256851135|ref|ZP_05556524.1| ribonuclease HII [Lactobacillus jensenii 27-2-CHN] gi|260660559|ref|ZP_05861474.1| ribonuclease HII [Lactobacillus jensenii 115-3-CHN] gi|282934516|ref|ZP_06339770.1| ribonuclease HII [Lactobacillus jensenii 208-1] gi|297206001|ref|ZP_06923396.1| ribonuclease H [Lactobacillus jensenii JV-V16] gi|256616197|gb|EEU21385.1| ribonuclease HII [Lactobacillus jensenii 27-2-CHN] gi|260548281|gb|EEX24256.1| ribonuclease HII [Lactobacillus jensenii 115-3-CHN] gi|281301409|gb|EFA93699.1| ribonuclease HII [Lactobacillus jensenii 208-1] gi|297149127|gb|EFH29425.1| ribonuclease H [Lactobacillus jensenii JV-V16] Length = 252 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 93/194 (47%), Positives = 120/194 (61%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E + VAG+DEVGRG LAGPVV AA+ILD + +NDSKK+S KKR EL Sbjct: 55 FQYEQKAWKAG-SIVAGVDEVGRGPLAGPVVTAAVILDDSFDLVEVNDSKKLSPKKRLEL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A+ + I S + ID+ NI++A A+ AV NL + P L+D ++P D Sbjct: 114 YPQILDKAVAVGIGVGSPELIDRINIYEADRVAMAQAVNNLAIKPDLLLVDAMNVPVD-- 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGDS S SIAAASIIAKV RD LM K YP Y F+ + GY TAKH +KE Sbjct: 172 IKQIELIKGDSKSNSIAAASIIAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHIAALKE 231 Query: 191 KGPSCIHRLTFRPL 204 G + IHR +F P+ Sbjct: 232 FGATPIHRRSFSPV 245 >gi|325125945|gb|ADY85275.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 256 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 119/197 (60%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E K V G+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR L Sbjct: 56 FSYEKDFWAKG-QLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLAL 114 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI A+ + + ++ ID+ NI++A A+ AVE L + P + L+D ++P D Sbjct: 115 YPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSIRPDALLVDAMNVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + +++ Sbjct: 173 LPQLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRK 232 Query: 191 KGPSCIHRLTFRPLRNL 207 GP+ IHRLTF P+ + Sbjct: 233 YGPTPIHRLTFSPVSEM 249 >gi|145634215|ref|ZP_01789926.1| ribonuclease HII [Haemophilus influenzae PittAA] gi|145268659|gb|EDK08652.1| ribonuclease HII [Haemophilus influenzae PittAA] Length = 197 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I Sbjct: 4 YPQGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGLADSKKLSEKKRLALSEEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+ Sbjct: 64 ALAWALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPAQAVV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G H Sbjct: 124 KGDSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQH 183 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 184 RRSFAPVKK 192 >gi|254228402|ref|ZP_04921828.1| ribonuclease HII [Vibrio sp. Ex25] gi|262393534|ref|YP_003285388.1| ribonuclease HII [Vibrio sp. Ex25] gi|151938990|gb|EDN57822.1| ribonuclease HII [Vibrio sp. Ex25] gi|262337128|gb|ACY50923.1| ribonuclease HII [Vibrio sp. Ex25] Length = 211 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 117/200 (58%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK++ KK Sbjct: 13 ELPPFEY-----PQGYQFVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLTEKK 67 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A ++ S + ID+ NI +AT+ A+ AV L+V P LIDG P Sbjct: 68 RMALLPEIKEKALAWAVGRCSPEEIDQLNILQATMVAMQRAVAGLKVQPDLVLIDGNRCP 127 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E A AV+KGD I+AASIIAKV RD+ M K +P +GF H GYPT H + Sbjct: 128 ELPM-DAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFE 186 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 187 AIEQHGVISEHRKSFKPVKK 206 >gi|323497990|ref|ZP_08102999.1| ribonuclease HII [Vibrio sinaloensis DSM 21326] gi|323317035|gb|EGA70037.1| ribonuclease HII [Vibrio sinaloensis DSM 21326] Length = 205 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 89/201 (44%), Positives = 117/201 (58%), Gaps = 8/201 (3%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P P E + +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S K Sbjct: 7 PLPP---FE---YPQGYQRIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEK 60 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR L +I A S+ S ID+ NI +AT+ A+ A++ L V P ALIDG Sbjct: 61 KRLALLPEIKEKALAWSVGRCSPTEIDQLNILQATMVAMQRAIDGLAVKPDLALIDGNRC 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 PE + AV+KGD I+AASIIAKV RD+ M K +P++GF H GYPT H Sbjct: 121 PELAM-DSQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHF 179 Query: 186 QVIKEKGPSCIHRLTFRPLRN 206 + I++ G HR +F+P++ Sbjct: 180 EAIEKHGVIEQHRKSFKPVKK 200 >gi|225874361|ref|YP_002755820.1| ribonuclease HII [Acidobacterium capsulatum ATCC 51196] gi|225794400|gb|ACO34490.1| ribonuclease HII [Acidobacterium capsulatum ATCC 51196] Length = 236 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 85/193 (44%), Positives = 122/193 (63%), Gaps = 3/193 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E R++ +AG+DEVGRGAL GPVV AA+IL G+ DSK++ RE L Sbjct: 28 RYERQARQQGATAIAGVDEVGRGALFGPVVAAAVILPSRIRLEGLRDSKQLRVSDRERLA 87 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ + AI ++I+ + ID+ NI++AT A+ AVE LQ P LID ++ D PC Sbjct: 88 TEVHACAIAVAIAEVDVETIDRINIYQATRLAMLRAVELLQPEPDHLLID--AMRIDHPC 145 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++I GDS+SLSIAAAS++AKV RDRL+ H YP+YG D+H GY T +H+ + + Sbjct: 146 AQTSIIYGDSLSLSIAAASVVAKVYRDRLVCELHALYPEYGLDAHKGYGTPRHKAALLQY 205 Query: 192 GPSCIHRLTFRPL 204 GP+ +HR +F P+ Sbjct: 206 GPTPLHRKSFAPV 218 >gi|227903862|ref|ZP_04021667.1| ribonuclease HII [Lactobacillus acidophilus ATCC 4796] gi|227868253|gb|EEJ75674.1| ribonuclease HII [Lactobacillus acidophilus ATCC 4796] Length = 252 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 122/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR +L Sbjct: 57 FLYEKQFWQKG-QLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLKL 115 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI A+ +++ + Q ID+ NI++A A+ AV L + P + L+D ++P D Sbjct: 116 YPKILEEAVSVAVGVKNAQVIDQINIYEADRQAMAQAVNALDIKPDALLVDAMNVPVD-- 173 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H +K+ Sbjct: 174 LPQIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPHYGFSRNAGYGTKEHIDALKQ 233 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR TF P+ + Sbjct: 234 YGPTHIHRKTFAPVSD 249 >gi|58337276|ref|YP_193861.1| ribonuclease HII [Lactobacillus acidophilus NCFM] gi|73917609|sp|Q5FKE4|RNH2_LACAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|58254593|gb|AAV42830.1| Ribonuclease HII [Lactobacillus acidophilus NCFM] Length = 250 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 122/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR +L Sbjct: 55 FLYEKQFWQKG-QLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLKL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI A+ +++ + Q ID+ NI++A A+ AV L + P + L+D ++P D Sbjct: 114 YPKILEEAVSVAVGVKNAQVIDQINIYEADRQAMAQAVNALDIKPDALLVDAMNVPVD-- 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD+LM K YP YGF + GY T +H +K+ Sbjct: 172 LPQIELIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPHYGFSRNAGYGTKEHIDALKQ 231 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR TF P+ + Sbjct: 232 YGPTHIHRKTFAPVSD 247 >gi|146318650|ref|YP_001198362.1| ribonuclease HII [Streptococcus suis 05ZYH33] gi|146320856|ref|YP_001200567.1| ribonuclease HII [Streptococcus suis 98HAH33] gi|253751769|ref|YP_003024910.1| ribonuclease HII [Streptococcus suis SC84] gi|253753593|ref|YP_003026734.1| ribonuclease HII [Streptococcus suis P1/7] gi|253755526|ref|YP_003028666.1| ribonuclease HII [Streptococcus suis BM407] gi|166226663|sp|A4W1C8|RNH2_STRS2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226665|sp|A4VV23|RNH2_STRSY RecName: Full=Ribonuclease HII; Short=RNase HII gi|145689456|gb|ABP89962.1| Ribonuclease HII [Streptococcus suis 05ZYH33] gi|145691662|gb|ABP92167.1| Ribonuclease HII [Streptococcus suis 98HAH33] gi|251816058|emb|CAZ51678.1| ribonuclease HII [Streptococcus suis SC84] gi|251817990|emb|CAZ55772.1| ribonuclease HII [Streptococcus suis BM407] gi|251819839|emb|CAR45820.1| ribonuclease HII [Streptococcus suis P1/7] gi|292558337|gb|ADE31338.1| Ribonuclease H [Streptococcus suis GZ1] gi|319758118|gb|ADV70060.1| ribonuclease HII [Streptococcus suis JS14] Length = 257 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 117/197 (59%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + E + +AGIDEVGRG LAGPVV AA+IL +NDSKKI K E + Sbjct: 58 LFYEKSLYENGVEFIAGIDEVGRGPLAGPVVAAAVILPKGCKIRYLNDSKKIPKSKHEAI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A+ + + ID+ NI++AT A+ A+ L P LID + D P Sbjct: 118 YQEVMERAVAVGVGIKDAALIDEVNIYEATKLAMLEALGKLSQKPDHLLIDAMKL--DTP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRD++M K++ YGF + GY T +H + + + Sbjct: 176 IPQTSIIKGDANSLSIAAASIVAKVTRDKMMADYDKEFSGYGFAKNAGYGTTEHLEGLNK 235 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 236 LGITPIHRKTFEPIKSM 252 >gi|326803548|ref|YP_004321366.1| ribonuclease HII [Aerococcus urinae ACS-120-V-Col10a] gi|326651055|gb|AEA01238.1| ribonuclease HII [Aerococcus urinae ACS-120-V-Col10a] Length = 258 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 120/195 (61%), Gaps = 3/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 ++EA + K +AG+DEVGRG LAGPVV AA+IL P F + DSK++S +R+ L Sbjct: 64 QIEADLHAKGFQYIAGVDEVGRGPLAGPVVTAAVILKPKRPLFDLRDSKQLSQVQRQNLI 123 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I +++ I+I ++ ID++NI AT ++ ++++ L LID + + Sbjct: 124 PLIKENSVAIAIDVQDNEAIDRYNILNATKRSMMNSIKKLSPQAEYVLIDAVDLSLN--I 181 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD +IAAASIIAK RD++MR K+YP YGFD +VGY T +H + I+ Sbjct: 182 PHSSLIKGDDRVSAIAAASIIAKEYRDQIMRDYAKRYPAYGFDRNVGYGTKEHLKAIETY 241 Query: 192 GPSCIHRLTFRPLRN 206 GP IHR +F P++N Sbjct: 242 GPCPIHRKSFAPIKN 256 >gi|319943812|ref|ZP_08018093.1| ribonuclease HII [Lautropia mirabilis ATCC 51599] gi|319743045|gb|EFV95451.1| ribonuclease HII [Lautropia mirabilis ATCC 51599] Length = 199 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 113/182 (62%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DE GRG LAGPVV AA+IL P++ G+ DSKK+S ++RE L +I A +++ Sbjct: 13 IAGVDEAGRGPLAGPVVAAAVILSPDHPIEGLRDSKKLSARRRETLANEIREKALAFAVA 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS + ID+ NI ATL A+ A++ LQ P IDG P+ + VI GD Sbjct: 73 SASVEEIDRLNILHATLLAMTRAIQGLQPQPLHVRIDGNRAPKLEGLRVETVIGGDDQDP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AK RD LM +++P YGF+ H+GY TA H ++E GP IHR +F P+ Sbjct: 133 AIAAASILAKTVRDHLMLQYAEQFPAYGFERHMGYGTAVHMAALREHGPCEIHRRSFAPV 192 Query: 205 RN 206 Sbjct: 193 AR 194 >gi|296110320|ref|YP_003620701.1| ribonuclease HII [Leuconostoc kimchii IMSNU 11154] gi|295831851|gb|ADG39732.1| ribonuclease HII [Leuconostoc kimchii IMSNU 11154] Length = 254 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + M +AG+DEVGRG LAGPV+ AA+IL + + DSK++S KR++L Sbjct: 59 FAFERHFWNQGMSDIAGVDEVGRGPLAGPVIAAAVILPHDFNVVEVIDSKQLSADKRDKL 118 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I + A+ I + ID NI++A A+ AV+NL P LID ++ +LP Sbjct: 119 YDLILAQAVSIGVGVVDAPTIDDINIYQAARLAMTKAVQNLAPEPDVLLID--AMTLNLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD++S SI AASI+AKVTRDRLM YP YGF + GY T H +++ Sbjct: 177 LPQEPLIKGDALSNSIGAASIVAKVTRDRLMADYDDIYPGYGFAKNAGYGTKLHLDQMRQ 236 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + IHR +F P+R+L Sbjct: 237 LGITPIHRRSFGPVRDLL 254 >gi|227543435|ref|ZP_03973484.1| ribonuclease H [Lactobacillus reuteri CF48-3A] gi|300910102|ref|ZP_07127562.1| ribonuclease H [Lactobacillus reuteri SD2112] gi|227186587|gb|EEI66658.1| ribonuclease H [Lactobacillus reuteri CF48-3A] gi|300892750|gb|EFK86110.1| ribonuclease H [Lactobacillus reuteri SD2112] Length = 256 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 113/194 (58%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E EK VAG+DEVGRG LAGPVV +IL+ + G+ DSK+++ +RE L Sbjct: 60 FKYEKYYWEKGYQYVAGMDEVGRGPLAGPVVTCVVILNADFDLIGVTDSKQLTRHERENL 119 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A +SI+ ID+ NI+ AT DA+ AV +L P ++D + D Sbjct: 120 YLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDAVPLAID-- 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD S+S+AAASI+AK RD LMR YP YGF ++GY T +H +++ Sbjct: 178 IPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLAGLEK 237 Query: 191 KGPSCIHRLTFRPL 204 G + IHR +F P+ Sbjct: 238 MGATPIHRRSFNPV 251 >gi|319406927|emb|CBI80564.1| Ribonuclease HII [Bartonella sp. 1-1C] Length = 212 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 104/207 (50%), Positives = 143/207 (69%), Gaps = 4/207 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MF S+ +P+F E +++K + +AG+DEVGRG LAGPVV AA++LD + IP G+NDS Sbjct: 1 MFNVSL--QPNFSYELDLQKKGFFYIAGVDEVGRGPLAGPVVTAAVVLDKDRIPEGLNDS 58 Query: 61 KKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S ++R LY +I +A +S++S + IDK NI KATL+A+ H + L + AL Sbjct: 59 KKLSSQQRNRLYYEILRNALAVSVASLCARTIDKSNIRKATLEAMRHCITGLAISAHYAL 118 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDGR IP +LPC A A+IKGD S+SIAAASIIAKV RDR+M+ A + Y +YG + HVGY Sbjct: 119 IDGRDIPSNLPCPAVALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRVYQNYGLEKHVGY 178 Query: 180 PTAKHQQVIKEKGP-SCIHRLTFRPLR 205 T H+ I + GP +HR +F PL+ Sbjct: 179 GTVAHRAAIDKYGPIVRLHRYSFSPLK 205 >gi|94497432|ref|ZP_01304002.1| Ribonuclease H [Sphingomonas sp. SKA58] gi|94423063|gb|EAT08094.1| Ribonuclease H [Sphingomonas sp. SKA58] Length = 199 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 86/201 (42%), Positives = 118/201 (58%), Gaps = 5/201 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + VAG+DE GRG LAGPVV AA+IL ++ P G+NDSK++S KKR Sbjct: 2 PDFSHERIHHP---GLVAGVDEAGRGPLAGPVVAAAVILRADDCPDGLNDSKQLSAKKRA 58 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L ++ + A I AS ID NI AT+ A+ AVE L L+DG P+ Sbjct: 59 ALEAQVKARALCWGIGVASVAEIDDLNILWATMLAMTRAVEALSADCAHVLVDGNRCPQ- 117 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + AV+ GD+ LSIAAASI+AK RDR+M A +P YG++S+ GY +A H + Sbjct: 118 WRWASTAVVDGDAKCLSIAAASILAKEERDRMMIAAAADHPHYGWESNKGYGSAHHLAAL 177 Query: 189 KEKGPSCIHRLTFRPLRNLSV 209 +E GP+ +HR +F P+ L + Sbjct: 178 REHGPTPLHRRSFSPVAQLLL 198 >gi|152983475|ref|YP_001346881.1| ribonuclease HII [Pseudomonas aeruginosa PA7] gi|166226639|sp|A6V1E6|RNH2_PSEA7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|150958633|gb|ABR80658.1| ribonuclease HII [Pseudomonas aeruginosa PA7] Length = 201 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 92/186 (49%), Positives = 117/186 (62%), Gaps = 2/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L GPVV AA+ILDP+ G+NDSKK+S +RE L+E+I A Sbjct: 12 DLVAGVDEVGRGPLCGPVVTAAVILDPSRPILGLNDSKKLSEARREALFEEIREKALAWC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ A + ID+ NI AT+ A+ AVE L V PR ALIDG P + V+KGDS Sbjct: 72 VARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPRLA-VPSAPVVKGDSQ 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M + YP YG H GYPTA H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMVELDRLYPGYGMAGHKGYPTAVHLEALSRLGPTPIHRRSFA 190 Query: 203 PLRNLS 208 P+R L Sbjct: 191 PVRELL 196 >gi|294648443|ref|ZP_06725932.1| ribonuclease HII [Acinetobacter haemolyticus ATCC 19194] gi|292825668|gb|EFF84382.1| ribonuclease HII [Acinetobacter haemolyticus ATCC 19194] Length = 200 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 118/192 (61%), Gaps = 1/192 (0%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + E+ +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I Sbjct: 5 QPLVERCNMTIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFAEI 64 Query: 76 TSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A SI+ ASH ID+ NI +AT A+ AVE L P ++DG IP+ + Sbjct: 65 QEKALAWSIAEASHVEIDEFNILQATFLAMRRAVEALATQPAKVIVDGNQIPKGINIPCE 124 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 A++ GD+ I+AASI+AKVTRDR M+ +YP+YGF H GYPT H + I G Sbjct: 125 AIVGGDATHAEISAASILAKVTRDRQMKALDLEYPNYGFAKHKGYPTKAHFEAIAIHGVI 184 Query: 195 CIHRLTFRPLRN 206 HR ++ P++ Sbjct: 185 DEHRRSYGPVKK 196 >gi|88798271|ref|ZP_01113857.1| ribonuclease HII [Reinekea sp. MED297] gi|88779047|gb|EAR10236.1| ribonuclease HII [Reinekea sp. MED297] Length = 202 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 91/186 (48%), Positives = 122/186 (65%), Gaps = 1/186 (0%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 + VAG+DEVGRG LAG VV AA+ILDP G+NDSKK+S +R L + I +A Sbjct: 12 LSHVAGVDEVGRGPLAGKVVTAAVILDPARPIDGLNDSKKLSPARRLALSQHIRENALSY 71 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +++ AS + ID+ NI AT+ A+ AVE L V P LIDG +P LPC A A++KGD Sbjct: 72 AVAEASVEEIDELNILGATMLAMRRAVEALSVAPNFCLIDGNRLPPGLPCPAEAIVKGDG 131 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+AASI+AKVTRD+ M H+++P+YGFD H GY TA+H + + GP HR +F Sbjct: 132 SVPAISAASILAKVTRDQQMLDLHQQHPEYGFDQHKGYGTAQHLAALVKFGPLKEHRRSF 191 Query: 202 RPLRNL 207 P+R L Sbjct: 192 APVRKL 197 >gi|116514255|ref|YP_813161.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275013|sp|Q049Z9|RNH2_LACDB RecName: Full=Ribonuclease HII; Short=RNase HII gi|116093570|gb|ABJ58723.1| RNase HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 256 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 117/197 (59%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E K V G+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR L Sbjct: 56 FSYEKDFWAKG-QLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLAL 114 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI A+ + + ++ ID+ NI++A A+ AVE L P L+D ++P D Sbjct: 115 YPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDVLLVDAMNVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + +++ Sbjct: 173 LPQLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRK 232 Query: 191 KGPSCIHRLTFRPLRNL 207 GP+ IHRLTF P+ + Sbjct: 233 YGPTPIHRLTFSPVSEM 249 >gi|165975585|ref|YP_001651178.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149400|ref|YP_001967925.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249833|ref|ZP_07336037.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|238687515|sp|B0BS34|RNH2_ACTPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|238692371|sp|B3GZX1|RNH2_ACTP7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|165875686|gb|ABY68734.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914531|gb|ACE60783.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651400|gb|EFL81552.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 197 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 87/188 (46%), Positives = 116/188 (61%), Gaps = 2/188 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 N +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I + A Sbjct: 9 NAHLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALC 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A + ID+ NI AT+ A+ AV L + P L+DG IP A AVIKGD Sbjct: 69 WSLGRAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPTLPM-PAQAVIKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR + Sbjct: 128 SLVAEISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKS 187 Query: 201 FRPLRNLS 208 F P++ + Sbjct: 188 FAPVKKIL 195 >gi|332799159|ref|YP_004460658.1| Ribonuclease H [Tepidanaerobacter sp. Re1] gi|332696894|gb|AEE91351.1| Ribonuclease H [Tepidanaerobacter sp. Re1] Length = 210 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 70/198 (35%), Positives = 101/198 (51%), Gaps = 1/198 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E ++++ VAG+DE GRG LAGPVV AA+IL + + DSKKIS KKRE++ Sbjct: 14 YDRERKLKQEGFTLVAGVDEAGRGPLAGPVVAAAVILVLDTEILNLKDSKKISEKKREKV 73 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE I A+ ++ + + ++ D+ Sbjct: 74 YEDIKGKAVAYAYDVIDADYIDNHNILNSTLMAMKNAVEKLPVKPEYILVDALKIPDITI 133 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 VI GD+I IAAASIIAKV RDR+MR YP+YGF + GY T +H I++ Sbjct: 134 PQEFVIHGDNICACIAAASIIAKVERDRIMRKYDLVYPEYGFIKNKGYGTKEHIDSIRKH 193 Query: 192 GPSCIHRLTFRPLRNLSV 209 G IHR +F ++ L + Sbjct: 194 GICPIHRRSFS-VKGLEI 210 >gi|238026917|ref|YP_002911148.1| ribonuclease HII [Burkholderia glumae BGR1] gi|237876111|gb|ACR28444.1| Ribonuclease HII [Burkholderia glumae BGR1] Length = 215 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 91/183 (49%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKRE LY +I A Sbjct: 27 EIVCGVDEAGRGPLAGPVVAAAVILDPARPIVGLDDSKALSAKKRERLYAEIVERAQAYC 86 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++SAS + ID NI AT+ A+ AVE L V+P A IDG P ++ A+I GD++ Sbjct: 87 VASASVEEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPTLA-IRSEAIIGGDAL 145 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKVTRDRL+ H +P YGFD H GY T KH ++E GP HR +F Sbjct: 146 VPSISAASILAKVTRDRLLVDLHASFPLYGFDVHSGYGTPKHLAALREHGPCEHHRRSFA 205 Query: 203 PLR 205 P+R Sbjct: 206 PVR 208 >gi|104774162|ref|YP_619142.1| ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123077255|sp|Q1G9U8|RNH2_LACDA RecName: Full=Ribonuclease HII; Short=RNase HII gi|103423243|emb|CAI98076.1| Ribonuclease HII [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 256 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 118/197 (59%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E K V G+DEVGRG LAGPVV AA+IL + +NDSKK+S +KR L Sbjct: 56 FSYEKDFWAKG-QLVGGVDEVGRGPLAGPVVAAAVILPEDFSLLEVNDSKKLSPQKRLAL 114 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI A+ + + ++ ID+ NI++A A+ AVE L P + L+D ++P D Sbjct: 115 YPKILQEAVAVGVGVMDNKVIDQINIYEADRLAMKQAVEALSTRPDALLVDAMNVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD LM + YPDY FD + GY T H + +++ Sbjct: 173 LPQLELIKGDAKSNSIAAASIVAKVFRDSLMDDYARLYPDYAFDHNAGYGTKDHLEALRK 232 Query: 191 KGPSCIHRLTFRPLRNL 207 GP+ IHRLTF P+ + Sbjct: 233 YGPTPIHRLTFSPVSEM 249 >gi|229588817|ref|YP_002870936.1| ribonuclease HII [Pseudomonas fluorescens SBW25] gi|229360683|emb|CAY47541.1| ribonuclease HII [Pseudomonas fluorescens SBW25] Length = 206 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 88/190 (46%), Positives = 118/190 (62%), Gaps = 2/190 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + + VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ +RE+LY++I Sbjct: 6 SLVAQAHELVAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEARREKLYDEIC 65 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A I+ A + ID+ NI AT+ A+ AVE L + P+ A+IDG P+ + A Sbjct: 66 EKALSWHIARAEVEEIDELNILHATMLAMQRAVEGLHITPKMAMIDGNRCPKLAM-PSEA 124 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ Sbjct: 125 VVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGMGGHKGYPTPVHLEALARLGPTP 184 Query: 196 IHRLTFRPLR 205 IHR +F P+R Sbjct: 185 IHRRSFAPVR 194 >gi|291519510|emb|CBK74731.1| Ribonuclease HII [Butyrivibrio fibrisolvens 16/4] Length = 254 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 89/190 (46%), Positives = 122/190 (64%), Gaps = 3/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E E+ + GIDEVGRG LAGPVV A +IL + INDSKK++ KREELY Sbjct: 62 EYEYKYWEQ-YDYIGGIDEVGRGPLAGPVVTACVILPKDCDILYINDSKKLTAAKREELY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E+I AI +SI +AS + ID NI +AT +A+ A+E +V P+ L D +IP+ + Sbjct: 121 EEIMEKAISVSIGAASEERIDDINILQATYEAMRQAIEECKVEPQLLLNDAVTIPQ-VKI 179 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SI AASIIAKVTRDR+M +P+Y F ++ GY +A+H + +K+ Sbjct: 180 PQVPIIKGDAKSISIGAASIIAKVTRDRMMVEYDSIFPEYHFANNKGYGSAEHIEALKKY 239 Query: 192 GPSCIHRLTF 201 GP IHR +F Sbjct: 240 GPCPIHRRSF 249 >gi|46446292|ref|YP_007657.1| ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25] gi|81627372|sp|Q6MDG7|RNH2_PARUW RecName: Full=Ribonuclease HII; Short=RNase HII gi|46399933|emb|CAF23382.1| putative ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25] Length = 222 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 120/197 (60%), Gaps = 3/197 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +AGIDE GRG LAGPVV AA IL + INDSKK+S K RE L+E Sbjct: 19 YEKRAFSQGYQLIAGIDEAGRGPLAGPVVAAACILPKGLLVPQINDSKKLSPKVRERLFE 78 Query: 74 KITSSA--IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++T+ + I ID+ NI++AT+ A+ A++ L V P L+DG ++P Sbjct: 79 RLTTDSAVRYGIGIIGQAEIDRVNIYQATILAMLMAIQQLPVTPDYVLVDGMNLPH-PDL 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD +S SIAAASIIAK TRDRLM H+++P YGF+ H GY T H + + ++ Sbjct: 138 PCLKIIKGDQLSQSIAAASIIAKETRDRLMCQYHREWPGYGFNQHKGYATELHLEALFKQ 197 Query: 192 GPSCIHRLTFRPLRNLS 208 GP IHR +F P++++ Sbjct: 198 GPCPIHRRSFDPIKSML 214 >gi|260549960|ref|ZP_05824175.1| ribonuclease HII family protein [Acinetobacter sp. RUH2624] gi|260406952|gb|EEX00430.1| ribonuclease HII family protein [Acinetobacter sp. RUH2624] Length = 188 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 116/183 (63%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A SI Sbjct: 2 FVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + A++ GD+ Sbjct: 62 AEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDASH 121 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ P Sbjct: 122 AEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAP 181 Query: 204 LRN 206 ++ Sbjct: 182 VKR 184 >gi|226952655|ref|ZP_03823119.1| ribonuclease HII [Acinetobacter sp. ATCC 27244] gi|226836592|gb|EEH68975.1| ribonuclease HII [Acinetobacter sp. ATCC 27244] Length = 200 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 118/192 (61%), Gaps = 1/192 (0%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + E+ +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I Sbjct: 5 QPLVERCNMTIAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFAEI 64 Query: 76 TSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A SI+ ASH ID+ NI +AT A+ AVE L P ++DG IP+ + Sbjct: 65 QEKALAWSIAEASHVEIDEFNILQATFLAMRRAVEALATQPAKVIVDGNQIPKGITIPCE 124 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 A++ GD+ I+AASI+AKVTRDR M+ +YP+YGF H GYPT H + I G Sbjct: 125 AIVGGDASHAEISAASILAKVTRDRQMKALDLEYPNYGFAKHKGYPTKAHFEAIAIHGVI 184 Query: 195 CIHRLTFRPLRN 206 HR ++ P++ Sbjct: 185 DEHRRSYGPVKK 196 >gi|224370178|ref|YP_002604342.1| RnhB [Desulfobacterium autotrophicum HRM2] gi|223692895|gb|ACN16178.1| RnhB [Desulfobacterium autotrophicum HRM2] Length = 197 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 90/194 (46%), Positives = 121/194 (62%), Gaps = 2/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + +AG+DE GRG LAGPVV AA++LD GI DSKK+S KKRE L Sbjct: 2 WTFEHRAQAAGYNCIAGVDEAGRGPLAGPVVSAAVVLDDGFPDHGIMDSKKLSPKKRELL 61 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A + + ASH ID+ NI +A+L ++ AV L + P LIDG + D Sbjct: 62 YDVIMDKALGVCVGIASHHEIDRINILRASLLSMRRAVNGLPLKPDYLLIDG-TFFIDSS 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q ++KGD++S+SIAAASI+AKVTRDR+M + YP YGF H GYPT H+Q + E Sbjct: 121 IQQQVIVKGDALSVSIAAASIVAKVTRDRIMVDMDQLYPGYGFARHKGYPTKAHKQALVE 180 Query: 191 KGPSCIHRLTFRPL 204 GPS +HR +F+ + Sbjct: 181 LGPSPVHRYSFKGV 194 >gi|323495348|ref|ZP_08100426.1| ribonuclease HII [Vibrio brasiliensis LMG 20546] gi|323310419|gb|EGA63605.1| ribonuclease HII [Vibrio brasiliensis LMG 20546] Length = 205 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 112/189 (59%), Gaps = 2/189 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I Sbjct: 13 YPTGYQLVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEK 72 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A S+ S + ID+ NI +AT+ A+ A+ L V P ALIDG PE + AV+ Sbjct: 73 ALAWSVGRCSPEEIDQLNILQATMVAMQRAIAGLGVQPDLALIDGNRCPELPM-DSQAVV 131 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I+AASIIAKV RD+ M K +P +GF H GYPT H + I++ G H Sbjct: 132 KGDLRVAEISAASIIAKVVRDQEMEELDKLHPQFGFAKHKGYPTKAHFEAIEQHGVIEQH 191 Query: 198 RLTFRPLRN 206 R +F+P++ Sbjct: 192 RKSFKPVKR 200 >gi|260557476|ref|ZP_05829691.1| ribonuclease HII [Acinetobacter baumannii ATCC 19606] gi|260409102|gb|EEX02405.1| ribonuclease HII [Acinetobacter baumannii ATCC 19606] Length = 188 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 116/183 (63%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A SI Sbjct: 2 FVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+H ID+ NI +AT A+ AVE L+ P+ ++DG IP+ + A+I GD+ Sbjct: 62 AEATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEAIIGGDASH 121 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ P Sbjct: 122 AEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAP 181 Query: 204 LRN 206 ++ Sbjct: 182 VKR 184 >gi|255348391|ref|ZP_05380398.1| ribonuclease HII [Chlamydia trachomatis 70] gi|255502932|ref|ZP_05381322.1| ribonuclease HII [Chlamydia trachomatis 70s] Length = 217 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 115/194 (59%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAGIDE GRG LAGPVV A IL + GI+DSKK++ K+R LYE Sbjct: 17 FENQAIEQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76 Query: 74 KI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +L+ P L+DG +P Sbjct: 77 LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPH--KI 134 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 135 PSLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLR 205 GP HR +F P++ Sbjct: 195 GPCVHHRKSFSPVK 208 >gi|296313291|ref|ZP_06863232.1| ribonuclease HII [Neisseria polysaccharea ATCC 43768] gi|296840213|gb|EFH24151.1| ribonuclease HII [Neisseria polysaccharea ATCC 43768] Length = 194 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 108/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I S A+ I++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKSQAVAWHIAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 AGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|184157471|ref|YP_001845810.1| ribonuclease HII [Acinetobacter baumannii ACICU] gi|239503491|ref|ZP_04662801.1| ribonuclease HII [Acinetobacter baumannii AB900] gi|332875053|ref|ZP_08442892.1| ribonuclease HII [Acinetobacter baumannii 6014059] gi|183209065|gb|ACC56463.1| Ribonuclease HII [Acinetobacter baumannii ACICU] gi|193076842|gb|ABO11570.2| RNAse HII [Acinetobacter baumannii ATCC 17978] gi|323517386|gb|ADX91767.1| ribonuclease HII [Acinetobacter baumannii TCDC-AB0715] gi|332736753|gb|EGJ67741.1| ribonuclease HII [Acinetobacter baumannii 6014059] Length = 188 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 116/183 (63%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A SI Sbjct: 2 FVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+H ID+ NI +AT A+ AVE L+ P+ ++DG IP+ + A++ GD+ Sbjct: 62 AEATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDASH 121 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ P Sbjct: 122 AEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAP 181 Query: 204 LRN 206 ++ Sbjct: 182 VKR 184 >gi|325129110|gb|EGC51959.1| ribonuclease HII [Neisseria meningitidis N1568] Length = 194 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 109/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|259500645|ref|ZP_05743547.1| ribonuclease HII [Lactobacillus iners DSM 13335] gi|302191334|ref|ZP_07267588.1| ribonuclease HII [Lactobacillus iners AB-1] gi|259168029|gb|EEW52524.1| ribonuclease HII [Lactobacillus iners DSM 13335] Length = 250 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 122/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR EL Sbjct: 56 FSYEKEFWCQK-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNEL 114 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P D Sbjct: 115 FPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPID-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K+ Sbjct: 173 LPQLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALKQ 232 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR +F P+ + Sbjct: 233 YGPTPIHRFSFEPVSS 248 >gi|304316917|ref|YP_003852062.1| ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778419|gb|ADL68978.1| Ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 245 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 112/196 (57%), Gaps = 4/196 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + + N + G+DEVGRG LAGPVV ++L + +NDSKK+ +KRE L Sbjct: 47 QYERELYKLNYKAIGGVDEVGRGPLAGPVVAGCVVLPKDVFIPDVNDSKKLGEEKRELLS 106 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I +AI I ++YID NI +T +A+ A+ + V LID ++ Sbjct: 107 EVIKKNAIAYGIGIIDNEYIDSVNILNSTYEAMRIAISKIDVEIDCLLIDAVK-IPNIDI 165 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD S+SIAAASIIAKV RD LM+ + YP YGF + GY T +H + IK+ Sbjct: 166 MQKPIIKGDMKSISIAAASIIAKVERDNLMKKYDELYPQYGFKKNKGYGTKEHIEAIKKY 225 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR TF L+ + Sbjct: 226 GPCPIHRKTF--LKKI 239 >gi|169633130|ref|YP_001706866.1| ribonuclease HII [Acinetobacter baumannii SDF] gi|169796619|ref|YP_001714412.1| ribonuclease HII [Acinetobacter baumannii AYE] gi|213156183|ref|YP_002318603.1| ribonuclease H [Acinetobacter baumannii AB0057] gi|215484081|ref|YP_002326306.1| Ribonuclease HII family protein [Acinetobacter baumannii AB307-0294] gi|301347289|ref|ZP_07228030.1| ribonuclease HII [Acinetobacter baumannii AB056] gi|301510211|ref|ZP_07235448.1| ribonuclease HII [Acinetobacter baumannii AB058] gi|301597198|ref|ZP_07242206.1| ribonuclease HII [Acinetobacter baumannii AB059] gi|332853559|ref|ZP_08434823.1| ribonuclease HII [Acinetobacter baumannii 6013150] gi|332868424|ref|ZP_08438155.1| ribonuclease HII [Acinetobacter baumannii 6013113] gi|169149546|emb|CAM87435.1| RNAse HII [Acinetobacter baumannii AYE] gi|169151922|emb|CAP00776.1| RNAse HII [Acinetobacter baumannii] gi|213055343|gb|ACJ40245.1| ribonuclease H [Acinetobacter baumannii AB0057] gi|213987268|gb|ACJ57567.1| Ribonuclease HII family protein [Acinetobacter baumannii AB307-0294] gi|332728592|gb|EGJ59964.1| ribonuclease HII [Acinetobacter baumannii 6013150] gi|332733423|gb|EGJ64606.1| ribonuclease HII [Acinetobacter baumannii 6013113] Length = 188 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 116/183 (63%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A SI Sbjct: 2 FVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + A++ GD+ Sbjct: 62 AEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIVIPCEAIVGGDASH 121 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ P Sbjct: 122 AEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAP 181 Query: 204 LRN 206 ++ Sbjct: 182 VKR 184 >gi|319937633|ref|ZP_08012037.1| ribonuclease [Coprobacillus sp. 29_1] gi|319807275|gb|EFW03887.1| ribonuclease [Coprobacillus sp. 29_1] Length = 210 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 119/198 (60%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + G+DE GRG +AGP+VVA +I + INDSK++S KKRE L Sbjct: 5 LRYEKAAYALGKSYIIGLDEAGRGPMAGPLVVAGVIFEKGYYHEAINDSKQLSEKKRESL 64 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A I + +D+ N+++A+ + A+ ++ + P AL D ++P Sbjct: 65 YDLIIRDALAYQIEIIDVEDVDRLNVYQASKKGMIDAIHHIAIQPDFALSD--AMPLGDE 122 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGDS+S+SI AASI+AKVTRDR+M+ +YP+YGF H GYPT +H++++K Sbjct: 123 IAHNAIIKGDSLSMSIGAASILAKVTRDRIMKKYDLQYPEYGFAQHKGYPTKQHKELLKM 182 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + IHR +F+P+ ++ Sbjct: 183 YGVTPIHRRSFQPVIDIL 200 >gi|148981147|ref|ZP_01816309.1| ribonuclease HII [Vibrionales bacterium SWAT-3] gi|145960974|gb|EDK26299.1| ribonuclease HII [Vibrionales bacterium SWAT-3] Length = 206 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 119/202 (58%), Gaps = 7/202 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 8 ELPPFEY-----PQGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 62 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A S+ S Q ID+ NI +AT+ A+ A+ L V P ALIDG +P Sbjct: 63 RLALLPEIKEKALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDMALIDGNRVP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E AV+KGD I+AASIIAKV RD+ M K +P++GF H GYPT H + Sbjct: 123 ELPMA-GIAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFE 181 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 I++ G + +R +F+P++ + Sbjct: 182 AIEKHGVTEHYRKSFKPVKRIL 203 >gi|148544008|ref|YP_001271378.1| ribonuclease HII [Lactobacillus reuteri DSM 20016] gi|184153402|ref|YP_001841743.1| ribonuclease HII [Lactobacillus reuteri JCM 1112] gi|227364921|ref|ZP_03848966.1| ribonuclease H [Lactobacillus reuteri MM2-3] gi|325682454|ref|ZP_08161971.1| ribonuclease HII [Lactobacillus reuteri MM4-1A] gi|166991068|sp|A5VJL7|RNH2_LACRD RecName: Full=Ribonuclease HII; Short=RNase HII gi|229564285|sp|B2G731|RNH2_LACRJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|148531042|gb|ABQ83041.1| RNase HII [Lactobacillus reuteri DSM 20016] gi|183224746|dbj|BAG25263.1| ribonuclease HII [Lactobacillus reuteri JCM 1112] gi|227070068|gb|EEI08446.1| ribonuclease H [Lactobacillus reuteri MM2-3] gi|324978293|gb|EGC15243.1| ribonuclease HII [Lactobacillus reuteri MM4-1A] Length = 256 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 79/194 (40%), Positives = 113/194 (58%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E E +AG+DEVGRG LAGPVV A+IL+ + G+ DSK+++ +RE L Sbjct: 60 FKYEKYYWENGCQYIAGMDEVGRGPLAGPVVTCAVILNADFDLIGVTDSKQLTRHERENL 119 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A +SI+ ID+ NI+ AT DA+ AV +L P ++D + D Sbjct: 120 YLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDAVPLAID-- 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD S+S+AAASI+AK RD LMR YP YGF ++GY T +H +++ Sbjct: 178 IPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLAGLEK 237 Query: 191 KGPSCIHRLTFRPL 204 G + IHR +F P+ Sbjct: 238 MGATPIHRRSFNPV 251 >gi|76788741|ref|YP_327827.1| ribonuclease HII [Chlamydia trachomatis A/HAR-13] gi|237804378|ref|YP_002888532.1| ribonuclease HII [Chlamydia trachomatis B/TZ1A828/OT] gi|97182374|sp|Q3KMZ3|RNH2_CHLTA RecName: Full=Ribonuclease HII; Short=RNase HII gi|76167271|gb|AAX50279.1| ribonuclease HII [Chlamydia trachomatis A/HAR-13] gi|231272678|emb|CAX09581.1| ribonuclease HII [Chlamydia trachomatis B/TZ1A828/OT] Length = 217 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 115/194 (59%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAG+DE GRG LAGPVV A IL + GI+DSKK++ K+R LYE Sbjct: 17 FENQAIEQGYSRVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76 Query: 74 KI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +LQ P L+DG +P Sbjct: 77 LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLQSTPDFLLVDGLFLPH--KV 134 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 135 PSLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLR 205 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVK 208 >gi|218782471|ref|YP_002433789.1| ribonuclease H [Desulfatibacillum alkenivorans AK-01] gi|218763855|gb|ACL06321.1| Ribonuclease H [Desulfatibacillum alkenivorans AK-01] Length = 224 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 84/205 (40%), Positives = 118/205 (57%), Gaps = 3/205 (1%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 + + P + E +K +AG+DE GRG LAGPVV AA++L N G++DS Sbjct: 14 LLDRDAMKDP-WSFENEAHKKGYTRIAGVDEAGRGPLAGPVVSAAVVLPGNADLPGVDDS 72 Query: 61 KKISHKKREELYEKITSSAIISISSA-SHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK++ KKR+ L+E I AI ID+ NI +A+L ++ +VENL+ P L Sbjct: 73 KKLTPKKRDALFESIYEQAIGIGIGIIDPVEIDRINILQASLLSMLVSVENLEPAPDYLL 132 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 IDG + + GDS+S+SIAAASI+AKVTRDRLM +++P +GF H GY Sbjct: 133 IDGPFGIK-SFLPQTPIKHGDSLSISIAAASIVAKVTRDRLMERYDQEFPAFGFAKHKGY 191 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPL 204 T H++ I GP IHR +FR + Sbjct: 192 GTKAHREAISLNGPCSIHRFSFRGV 216 >gi|295692915|ref|YP_003601525.1| ribonuclease hii [Lactobacillus crispatus ST1] gi|295031021|emb|CBL50500.1| Ribonuclease HII [Lactobacillus crispatus ST1] Length = 250 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 121/196 (61%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E EK VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR +L Sbjct: 55 FSYEKKFWEKG-QLVAGVDEVGRGPLAGPVVTAAVIIDQDFDLLDVNDSKKLSPEKRLKL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI + A+ + I S + ID+ NI++A A+ AV L V P + L+D ++ + Sbjct: 114 YPKILAEAVSVGIGVKSAEVIDQINIYEADRQAMAQAVRALDVKPNALLVD--AMNVPVN 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD+LM + YP Y F + GY T +H + +K+ Sbjct: 172 LPQVKLIKGDAKSNSIAAASIVAKVFRDQLMDDYDRIYPQYCFHHNAGYGTKEHIEALKK 231 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR TF P+ + Sbjct: 232 YGPTLIHRKTFAPVSD 247 >gi|89895335|ref|YP_518822.1| hypothetical protein DSY2589 [Desulfitobacterium hafniense Y51] gi|122482323|sp|Q24UB4|RNH2_DESHY RecName: Full=Ribonuclease HII; Short=RNase HII gi|89334783|dbj|BAE84378.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 260 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 112/196 (57%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AGIDE GRG LAGPVV A IL G+NDSKK++ KRE+L Sbjct: 61 LREEKQLWLNGYLHIAGIDEAGRGPLAGPVVAATCILPAKFNLPGLNDSKKLTESKREKL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I AI ++ SA ID NI +AT A+ AVE L+V P LID L Sbjct: 121 FQQIKEQAIGYAVGSAEPAEIDGLNILQATKLAMKRAVEGLKVRPHFLLIDAL-ELPSLK 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD++S SIAAASI+AKV+RD LM K YP+YGF + GY T +H ++ Sbjct: 180 IPQKGIIDGDALSASIAAASILAKVSRDHLMGELDKLYPEYGFAKNKGYGTREHLMALRR 239 Query: 191 KGPSCIHRLTFRPLRN 206 G S IHR +F P++ Sbjct: 240 CGVSPIHRRSFAPVQQ 255 >gi|283798046|ref|ZP_06347199.1| ribonuclease HII [Clostridium sp. M62/1] gi|291074350|gb|EFE11714.1| ribonuclease HII [Clostridium sp. M62/1] gi|295091815|emb|CBK77922.1| Ribonuclease HII [Clostridium cf. saccharolyticum K10] Length = 223 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 109/190 (57%), Gaps = 3/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + GIDE GRG LAGPVV AA IL + +NDSKK++ K+REEL+ Sbjct: 21 EYERKYASCGF--ICGIDEAGRGPLAGPVVAAACILPTDCEILYLNDSKKLTEKRREELF 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ + S ID+ NI +AT +A+ AVE L V P L D IP Sbjct: 79 VEIQEKAVSFGVGIVSPAVIDEINILQATYEAMRQAVEKLSVRPDVFLNDAVVIPGIDES 138 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASI+AKVTRD +M + YP+YGF H GY T H ++E Sbjct: 139 RQVKIIKGDAKSVSIAAASILAKVTRDHMMEEYDRLYPEYGFAKHKGYGTKAHLDAVREH 198 Query: 192 GPSCIHRLTF 201 G IHR +F Sbjct: 199 GMCPIHRRSF 208 >gi|261344722|ref|ZP_05972366.1| ribonuclease HII [Providencia rustigianii DSM 4541] gi|282567164|gb|EFB72699.1| ribonuclease HII [Providencia rustigianii DSM 4541] Length = 196 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKRE+L+++I A I Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLTEKKREKLFDEIKEKALCWCI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P L+DG P+ + AV+KGDS+ Sbjct: 70 GRAEPNEIDELNILHATMLAMQRAVAGLSITPEFVLVDGNRCPKLSM-PSQAVVKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RDR M K +P+YGF H GYPTA H + + + G + HR +F P Sbjct: 129 QEISAASILAKVVRDREMVELDKVFPEYGFAKHKGYPTAYHLEKLAQFGATEFHRKSFAP 188 Query: 204 LRN 206 +R Sbjct: 189 VRR 191 >gi|222153077|ref|YP_002562254.1| ribonuclease HII [Streptococcus uberis 0140J] gi|254807991|sp|B9DS69|RNH2_STRU0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|222113890|emb|CAR42059.1| ribonuclease HII [Streptococcus uberis 0140J] Length = 257 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 77/199 (38%), Positives = 115/199 (57%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E ++ ++ +AGIDEVGRG LAGPVV A +IL + G+NDSKKI K + Sbjct: 59 LSYEKVLYQEGFSLIAGIDEVGRGPLAGPVVAACVILPIDCKIKGLNDSKKIPKSKHLSI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPEDL 129 ++ I A I I + ID NI++AT A+ A++N+ + + ++ + Sbjct: 119 FQAIQERALGIGIGIVDNHVIDDINIYQATKVAMIEAIKNIKGDVTEPDYLLIDAMTLET 178 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++IKGD+ S+SIAAASI+AKVTRDRLM K +P Y F + GY T H +K Sbjct: 179 PIPQQSIIKGDANSMSIAAASIVAKVTRDRLMMDYEKAFPGYDFAKNAGYGTTSHLNGLK 238 Query: 190 EKGPSCIHRLTFRPLRNLS 208 + G + IHR +F P++++ Sbjct: 239 QFGVTPIHRTSFEPIKSML 257 >gi|254508672|ref|ZP_05120787.1| ribonuclease HII [Vibrio parahaemolyticus 16] gi|219548429|gb|EED25439.1| ribonuclease HII [Vibrio parahaemolyticus 16] Length = 205 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 116/200 (58%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + VAG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KK Sbjct: 7 ELPPFEY-----PQGYQHVAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKK 61 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A S+ + ID+ NI +AT+ A+ A+ L+V P ALIDG P Sbjct: 62 RLALLPEIQEKALAWSVGRCTPAEIDELNILQATMVAMQRAIAGLKVQPDLALIDGNRCP 121 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 A AV+KGD I+AASIIAKV RD+ M K +P++GF H GYPT H + Sbjct: 122 ALPM-DAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFE 180 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I+ G HR +F+P++ Sbjct: 181 AIEAHGVIDQHRKSFKPVKK 200 >gi|309389199|gb|ADO77079.1| Ribonuclease H [Halanaerobium praevalens DSM 2228] Length = 271 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 124/196 (63%), Gaps = 4/196 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +LE +K + GIDE GRG LAGPVV AA++LDP N +G++DSKK++ KRE L+ Sbjct: 74 QLEKEYSQKGYQVIIGIDEAGRGPLAGPVVAAAVLLDPQNKIYGLDDSKKLNLTKRENLF 133 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIPED 128 ++I + A + I A+ IDK+NI +AT A+ AV LQ P LIDG ++ Sbjct: 134 KQIKAKAKVGIGQATSSEIDKYNIREATFTAMKRAVKDLLPKLQKQPDLLLIDGNAVIPG 193 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L + ++I GD+ +IAAASIIAKV+RD+L+ +++P+Y +S+ GY TA+H + Sbjct: 194 LTVEQESIIDGDAKVNNIAAASIIAKVSRDKLIYKYAEEFPEYNLESNKGYGTAEHIAAL 253 Query: 189 KEKGPSCIHRLTFRPL 204 K+ G + IHR +F + Sbjct: 254 KKYGSTPIHRKSFARV 269 >gi|257089969|ref|ZP_05584330.1| ribonuclease HII [Enterococcus faecalis CH188] gi|256998781|gb|EEU85301.1| ribonuclease HII [Enterococcus faecalis CH188] Length = 255 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 90/196 (45%), Positives = 127/196 (64%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KK+E LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKQETLY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ I + A ID+ NI++AT A+ A+++L P LID ++ D+P Sbjct: 121 NQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFAPDYLLID--AMQLDVPQ 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T +H +++ Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKEHLLGLEKY 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFAPIKDM 254 >gi|166154250|ref|YP_001654368.1| ribonuclease HII [Chlamydia trachomatis 434/Bu] gi|166155125|ref|YP_001653380.1| ribonuclease HII [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335499|ref|ZP_07223743.1| ribonuclease HII [Chlamydia trachomatis L2tet1] gi|238687401|sp|B0B9D6|RNH2_CHLT2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238687453|sp|B0BB15|RNH2_CHLTB RecName: Full=Ribonuclease HII; Short=RNase HII gi|165930238|emb|CAP03723.1| ribonuclease HII [Chlamydia trachomatis 434/Bu] gi|165931113|emb|CAP06677.1| ribonuclease HII [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 217 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 115/194 (59%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAG+DE GRG LAGPVV A IL + GI+DSKK++ K+R LYE Sbjct: 17 FENQAIEQGYSQVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76 Query: 74 KI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +L+ P L+DG +P Sbjct: 77 LLLEDPEVDCGVGVISVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPH--KI 134 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 135 PSLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLR 205 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVK 208 >gi|312871434|ref|ZP_07731529.1| ribonuclease HII [Lactobacillus iners LEAF 3008A-a] gi|312872310|ref|ZP_07732380.1| ribonuclease HII [Lactobacillus iners LEAF 2062A-h1] gi|311092133|gb|EFQ50507.1| ribonuclease HII [Lactobacillus iners LEAF 2062A-h1] gi|311093087|gb|EFQ51436.1| ribonuclease HII [Lactobacillus iners LEAF 3008A-a] Length = 250 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 122/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + VAG+DEVGRG LAGPVV AA+ILD N +NDSKK++ KKR EL Sbjct: 56 FSYEKEFWCQK-KLVAGVDEVGRGPLAGPVVTAAVILDKNFDLIDVNDSKKLTPKKRNEL 114 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S+ A++ IDK NI++A A+ AV+ L+V P + L+D +P D Sbjct: 115 FPMILDKAVCVSVGLANNDLIDKINIYEADRVAMARAVKGLKVKPDALLVDAMDVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I+GDS S SIAAASI+AKV RDRLM + YP+Y F + GY TAKH +K+ Sbjct: 173 LPQLKLIRGDSKSNSIAAASIVAKVFRDRLMDAYGELYPEYDFAHNAGYGTAKHLSALKQ 232 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR +F P+ + Sbjct: 233 YGPTPIHRFSFEPVSS 248 >gi|291546334|emb|CBL19442.1| Ribonuclease HII [Ruminococcus sp. SR1/5] Length = 251 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 91/189 (48%), Positives = 118/189 (62%), Gaps = 4/189 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV A+IL + +NDSKK++ KKREELY+ Sbjct: 61 YEHEYEHLGY--LCGIDEVGRGPLAGPVVACAVILPKDCDILWLNDSKKLTAKKREELYD 118 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + I AS + ID+ NI +AT +A+ AV L V P+ L D +IPE Sbjct: 119 VILEGAVSVGIGMASPERIDEINILQATYEAMRQAVSRLSVQPQLLLNDAVTIPEIQ-IP 177 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASI+AKVTRDR+M K P+YGF S+ GY +A H + +K+ G Sbjct: 178 QVPIIKGDAKSVSIAAASIVAKVTRDRMMEEYDKVLPEYGFASNKGYGSAAHIEALKKYG 237 Query: 193 PSCIHRLTF 201 PS IHR TF Sbjct: 238 PSPIHRKTF 246 >gi|261391728|emb|CAX49177.1| ribonuclease HII (RNase HII) [Neisseria meningitidis 8013] Length = 194 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 108/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A +S+ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDTLAEMIKNQAAAWHVSA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|319405354|emb|CBI78971.1| Ribonuclease HII [Bartonella sp. AR 15-3] Length = 212 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 102/203 (50%), Positives = 140/203 (68%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++P +P+F E +++K + VAG+DEVGRG LAGPVV AA++LD + IP G+NDSKK+S Sbjct: 3 NVPFQPNFSYELDLQKKGFFYVAGVDEVGRGPLAGPVVTAAVVLDKSRIPEGLNDSKKLS 62 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R LY +I +A IS++S + IDK +I KATL+A+ V L + ALIDGR Sbjct: 63 RQQRNRLYYEILQNALAISVASLCARTIDKSDIRKATLEAMRRCVTGLAISAHYALIDGR 122 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP +LPC A A+IKGD S+SIAAASIIAKV RDR+M+ A + Y +Y + HVGY T Sbjct: 123 DIPSNLPCPAIALIKGDQSSVSIAAASIIAKVIRDRMMQYAGRVYQNYDLEKHVGYGTVA 182 Query: 184 HQQVIKEKGP-SCIHRLTFRPLR 205 H+ I + GP +HR +F PL+ Sbjct: 183 HRAAIDKYGPIVRLHRYSFSPLK 205 >gi|295426276|ref|ZP_06818936.1| ribonuclease HII [Lactobacillus amylolyticus DSM 11664] gi|295064015|gb|EFG54963.1| ribonuclease HII [Lactobacillus amylolyticus DSM 11664] Length = 251 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 122/196 (62%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E +K VAG+DEVGRG LAGPVV AA+I+D + +NDSKK+S +KR L Sbjct: 56 FTYEKKFWQKG-QIVAGVDEVGRGPLAGPVVTAAVIIDDHFDLLDVNDSKKLSPQKRLAL 114 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI S AI +++ S Q ID+ NI++A A+ AV +L P + L+D ++P D Sbjct: 115 YPKILSEAISVAVGVKSPQVIDQINIYEADRQAMAEAVLDLDQKPDALLVDAMNVPVD-- 172 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD+LM K YP Y F + GY TAKH +K+ Sbjct: 173 LPQVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYAKIYPQYDFPDNAGYGTAKHLAALKK 232 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR TF P+ + Sbjct: 233 YGPTPIHRKTFAPVSD 248 >gi|291563277|emb|CBL42093.1| Ribonuclease HII [butyrate-producing bacterium SS3/4] Length = 214 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 113/190 (59%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E ++ + GIDE GRG LAGPV A IL + +NDSKK+S +REEL+ Sbjct: 23 EFERQY--EDCAFICGIDEAGRGPLAGPVAAGAAILPKDCRILYLNDSKKLSESRREELF 80 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I AI S+ + ID+ NI +AT +A+ A+ L +P+ L D +IP + Sbjct: 81 LEIKEKAIAWSVGIVGPERIDEINILQATYEAMRQAISKLDPVPQVLLNDAVTIP-GVAI 139 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKVTRD +M K+YP+YGF H GY T H +KE Sbjct: 140 PQVPIIKGDAKSVSIAAASILAKVTRDHMMEEYDKEYPEYGFAKHKGYGTPAHITALKEF 199 Query: 192 GPSCIHRLTF 201 GP+ IHR TF Sbjct: 200 GPTPIHRRTF 209 >gi|294012729|ref|YP_003546189.1| ribonuclease HII [Sphingobium japonicum UT26S] gi|292676059|dbj|BAI97577.1| ribonuclease HII [Sphingobium japonicum UT26S] Length = 199 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 84/201 (41%), Positives = 121/201 (60%), Gaps = 5/201 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E ++ VAG+DE GRG LAGPVV AA+IL + P G+NDSK++S +R Sbjct: 2 PDFAHE-LLHHPG--LVAGVDEAGRGPLAGPVVAAAVILRQEDCPEGLNDSKQLSAARRA 58 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I + A + AS + ID NI AT+ A+ AVE L L+DG P+ Sbjct: 59 VLEGEIKARALCWGLGVASVEEIDSINILWATMLAMTRAVEALAHDCAHVLVDGNRCPQ- 117 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + A+++GD+ LSIAAASI+AK RDR+M A +P YG++S+ GY +A+H + Sbjct: 118 WRWASTAIVEGDAKCLSIAAASILAKEARDRMMVEAAATHPHYGWESNKGYGSARHLAAL 177 Query: 189 KEKGPSCIHRLTFRPLRNLSV 209 +E GP+ +HR +F P+ LS+ Sbjct: 178 REHGPTPLHRRSFAPVAQLSL 198 >gi|330817425|ref|YP_004361130.1| Ribonuclease HII [Burkholderia gladioli BSR3] gi|327369818|gb|AEA61174.1| Ribonuclease HII [Burkholderia gladioli BSR3] Length = 217 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKRE LY +I + + Sbjct: 29 EIVCGVDEAGRGPLAGPVVAAAVILDPARPILGLDDSKALSAKKRELLYHEIVAHSRAWC 88 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++SAS + ID NI AT+ A+ AVE L ++P A IDG P ++ A++ GD++ Sbjct: 89 VASASVEEIDTLNILHATMLAMRRAVEGLSLLPTLAKIDGNRCPTLG-IRSEAIVGGDAL 147 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASIIAKVTRDRL+ H +P YGFD H GY T KH ++E GP HR +F Sbjct: 148 VPSISAASIIAKVTRDRLLVDLHATFPHYGFDVHAGYGTPKHLAALREHGPCEHHRRSFA 207 Query: 203 PLR 205 P+R Sbjct: 208 PVR 210 >gi|121533787|ref|ZP_01665614.1| Ribonuclease H [Thermosinus carboxydivorans Nor1] gi|121307778|gb|EAX48693.1| Ribonuclease H [Thermosinus carboxydivorans Nor1] Length = 265 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 69/195 (35%), Positives = 97/195 (49%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E++ E+ + +AG+DE GRG LAGPVVVAA+IL +NDSKK+S +R L Sbjct: 66 YLYESVFYEQGLDLIAGVDEAGRGPLAGPVVVAAVILPKRQHLPMLNDSKKLSPHQRSLL 125 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YEKI +A+ + V + + Sbjct: 126 YEKIIGTAVAVNHVVIPVCQIDSMNIYQATLQGMYRVLENLSPKPQVALIDAMPLRKIVL 185 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++I GD++S SIAAASI+AKV RDR M YP YGF H GY T +H ++ Sbjct: 186 PHMSIINGDALSASIAAASIVAKVVRDRYMDEMDVLYPGYGFAKHKGYATPEHLAALRRL 245 Query: 192 GPSCIHRLTFRPLRN 206 GP IHR +F P+++ Sbjct: 246 GPCPIHRRSFEPIKS 260 >gi|260662114|ref|ZP_05863010.1| ribonuclease HII [Lactobacillus fermentum 28-3-CHN] gi|260553497|gb|EEX26389.1| ribonuclease HII [Lactobacillus fermentum 28-3-CHN] Length = 256 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 72/193 (37%), Positives = 103/193 (53%), Gaps = 1/193 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + + VAGIDEVGRG LAGPVV A++LD G+ DSK++S +RE+L Sbjct: 60 FRYENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQL 119 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 Y +I A+ + S A + + + + ++P D+P Sbjct: 120 YLRILDEAVEVSLAVSPAQEIDRLNIYAATQTAMIR-SVKALHHQPSHLIVDAVPLDIPV 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +I+GD S+S+AAASI+AK RD LM I + YP YGF ++GY TA H +++ Sbjct: 179 PQTTLIRGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLEQL 238 Query: 192 GPSCIHRLTFRPL 204 G IHR TFRP+ Sbjct: 239 GACPIHRRTFRPV 251 >gi|150390501|ref|YP_001320550.1| ribonuclease H [Alkaliphilus metalliredigens QYMF] gi|189043609|sp|A6TRS3|RNH2_ALKMQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|149950363|gb|ABR48891.1| Ribonuclease H [Alkaliphilus metalliredigens QYMF] Length = 204 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 78/202 (38%), Positives = 111/202 (54%), Gaps = 7/202 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E+E + E+ +AG DEVGRG L G V+ A +IL + G+ DSKK+S K+REEL Sbjct: 4 LEIENQLWEEGYESIAGCDEVGRGCLFGSVLAATVILPKGLLIEGVKDSKKLSPKRREEL 63 Query: 72 YEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIP 126 YE I +AI + S + ID+ NI +A+ A+ +V I + Sbjct: 64 YEVIKKNAIAMGVGIISAEVIDQINIRQASRLAMKKSVLSLTTIDGESKIPDYILVDAEN 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D+ A+IKGD S IAAASI+AKV RDRL ++YP+YG H GY T H++ Sbjct: 124 IDIAIPQSAIIKGDDRSQGIAAASIVAKVIRDRLCIRWDEEYPNYGIAQHKGYGTKLHRE 183 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 + + GPS +HR +F L+ + Sbjct: 184 ALLKYGPSELHRRSF--LKKIL 203 >gi|325121486|gb|ADY81009.1| RNAse HII [Acinetobacter calcoaceticus PHEA-2] Length = 188 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 116/183 (63%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A SI Sbjct: 2 FIAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + A++ GD+ Sbjct: 62 AEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDASH 121 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ P Sbjct: 122 AEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAVHGVIDQHRRSYAP 181 Query: 204 LRN 206 ++ Sbjct: 182 VKR 184 >gi|293608749|ref|ZP_06691052.1| ribonuclease HII [Acinetobacter sp. SH024] gi|292829322|gb|EFF87684.1| ribonuclease HII [Acinetobacter sp. SH024] Length = 189 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 116/183 (63%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A SI Sbjct: 3 FIAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSI 62 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + A++ GD+ Sbjct: 63 AEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDASH 122 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ P Sbjct: 123 AEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAVHGVIDQHRRSYAP 182 Query: 204 LRN 206 ++ Sbjct: 183 VKR 185 >gi|121604674|ref|YP_982003.1| ribonuclease HII [Polaromonas naphthalenivorans CJ2] gi|189043638|sp|A1VN54|RNH2_POLNA RecName: Full=Ribonuclease HII; Short=RNase HII gi|120593643|gb|ABM37082.1| RNase HII [Polaromonas naphthalenivorans CJ2] Length = 208 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DE GRG LAGPVV AA+ILDP N G+ DSKK++ +RE+LY++I + A S Sbjct: 23 GLMAGVDEAGRGPLAGPVVAAAVILDPFNPIMGLADSKKLTALRREKLYDEIQAKALCCS 82 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+ + ID NI +AT+ A+ AVE L++ P L+DG +P A A++KGD++ Sbjct: 83 IALATVEEIDSLNILQATMLAMKRAVEGLRLKPNKVLVDGNRLPTLK-ILAEAIVKGDAL 141 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR H +YP YGF H GY TA+H +++ G HR +F Sbjct: 142 VPAISAASILAKVYRDRWCGDYHLQYPQYGFAGHKGYGTAEHLAALRQHGACPQHRKSFA 201 Query: 203 PL 204 P+ Sbjct: 202 PV 203 >gi|184155373|ref|YP_001843713.1| ribonuclease HII [Lactobacillus fermentum IFO 3956] gi|238692975|sp|B2GC51|RNH2_LACF3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|183226717|dbj|BAG27233.1| ribonuclease HII [Lactobacillus fermentum IFO 3956] gi|299783202|gb|ADJ41200.1| Ribonuclease HII (RNase HII) [Lactobacillus fermentum CECT 5716] Length = 256 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 73/193 (37%), Positives = 103/193 (53%), Gaps = 1/193 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + + VAGIDEVGRG LAGPVV A++LD G+ DSK++S +RE+L Sbjct: 60 FRYENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQL 119 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 Y +I A+ + S A + + + + ++P D+P Sbjct: 120 YLRILDEAVEVSLAVSPAQEIDRLNIYAATQTAMIR-SVKALHHQPSHLIVDAVPLDIPV 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD S+S+AAASI+AK RD LM I + YP YGF ++GY TA H +++ Sbjct: 179 PQTTLIKGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLEQL 238 Query: 192 GPSCIHRLTFRPL 204 G IHR TFRP+ Sbjct: 239 GACPIHRRTFRPV 251 >gi|313904190|ref|ZP_07837569.1| Ribonuclease H [Eubacterium cellulosolvens 6] gi|313470992|gb|EFR66315.1| Ribonuclease H [Eubacterium cellulosolvens 6] Length = 218 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 89/190 (46%), Positives = 116/190 (61%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E E + G+DEVGRG LAGPV AA+IL + INDSKK+S K+REELY Sbjct: 27 EFEKAHPEAEY--ICGVDEVGRGPLAGPVTTAAVILPKDARILYINDSKKLSEKRREELY 84 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I AI +S+ S + ID+ NI +ATL+++ +V L V P +D + + Sbjct: 85 DIIMEEAIAVSVKLNSWERIDEINILQATLESMRESVNTLDVRPDLVFVDAVT-IPGIDI 143 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAASIIAKVTRDR+M+ + YP Y F S+ GY T KH + +KE Sbjct: 144 PQIPIIKGDAKSQSIAAASIIAKVTRDRMMKEYDRLYPAYDFASNKGYGTKKHIEALKEF 203 Query: 192 GPSCIHRLTF 201 GP IHR TF Sbjct: 204 GPCPIHRRTF 213 >gi|49473986|ref|YP_032028.1| ribonuclease HII [Bartonella quintana str. Toulouse] gi|81647195|sp|Q6G0E6|RNH2_BARQU RecName: Full=Ribonuclease HII; Short=RNase HII gi|49239489|emb|CAF25842.1| Ribonuclease HII [Bartonella quintana str. Toulouse] Length = 223 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 102/203 (50%), Positives = 143/203 (70%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++P +P+F E ++++ + +AG+DEVGRG LAGPVV AA+ILD +++P G+NDSKK+S Sbjct: 13 NLPLKPNFSCELDLQKQGFFHIAGVDEVGRGPLAGPVVTAAVILDKDHVPDGLNDSKKLS 72 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R ELY +I SA +SI+S + ID+ +I KATL+A+ V L + ALIDGR Sbjct: 73 AQRRNELYCEILQSALAVSIASLCARTIDQSDIRKATLEAMRRCVTGLAIPAHYALIDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP LPC A A+IKGD S+SIAAASIIAKVTRDR+M+ A + Y +YG + HVGY T Sbjct: 133 DIPFQLPCPATALIKGDQHSVSIAAASIIAKVTRDRMMKCAGQIYKNYGLEKHVGYATLA 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ + + GP +HR +F PL+ Sbjct: 193 HRIALDKYGPVVGLHRYSFAPLK 215 >gi|218710304|ref|YP_002417925.1| ribonuclease HII [Vibrio splendidus LGP32] gi|254808007|sp|B7VIQ4|RNH2_VIBSL RecName: Full=Ribonuclease HII; Short=RNase HII gi|218323323|emb|CAV19500.1| Ribonuclease HII [Vibrio splendidus LGP32] Length = 206 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 115/191 (60%), Gaps = 2/191 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I Sbjct: 14 YPQGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEK 73 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A S+ S Q ID+ NI +AT+ A+ A+ L V P ALIDG +PE A++ Sbjct: 74 ALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDMALIDGNRVPELPMA-GLAIV 132 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I+AASIIAKV RD+ M K +P++GF H GYPT H + I++ G + + Sbjct: 133 KGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFEAIEKHGVTEHY 192 Query: 198 RLTFRPLRNLS 208 R +F+P++ + Sbjct: 193 RKSFKPVKRIL 203 >gi|304388999|ref|ZP_07371046.1| ribonuclease HII [Neisseria meningitidis ATCC 13091] gi|304337133|gb|EFM03320.1| ribonuclease HII [Neisseria meningitidis ATCC 13091] Length = 194 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 108/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A +S+ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDTLAEMIKNQAAAWHVSA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|227515157|ref|ZP_03945206.1| ribonuclease H [Lactobacillus fermentum ATCC 14931] gi|227086489|gb|EEI21801.1| ribonuclease H [Lactobacillus fermentum ATCC 14931] Length = 256 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 74/193 (38%), Positives = 104/193 (53%), Gaps = 1/193 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + + VAGIDEVGRG LAGPVV A++LD G+ DSK++S +RE+L Sbjct: 60 FRYENQLWQAGHQYVAGIDEVGRGPLAGPVVTCAVVLDSQFDLVGVTDSKQLSRHEREQL 119 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 Y +I A+ + S A A + + + + ++P D+P Sbjct: 120 YLRILDEAVEVSLAVSPAQEIDRLNIYAATQAAMIR-SVKALHHQPSHLIVDAVPLDIPV 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD S+S+AAASI+AK RD LM I + YP YGF ++GY TA H +++ Sbjct: 179 PQTTLIKGDQKSISVAAASIVAKEYRDHLMAIYDRLYPGYGFKDNMGYGTAAHLAGLEQL 238 Query: 192 GPSCIHRLTFRPL 204 G IHR TFRP+ Sbjct: 239 GACPIHRRTFRPV 251 >gi|327183486|gb|AEA31933.1| ribonuclease HII [Lactobacillus amylovorus GRL 1118] Length = 252 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 121/196 (61%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E KN VAG+DEVGRG LAGPVV AA+I+D + +NDSKK++ ++R L Sbjct: 55 FAYEKEFWAKN-QLVAGVDEVGRGPLAGPVVTAAVIIDHDFDLIDVNDSKKLTPERRLAL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI A+ + I S Q ID+ NI++A A+ AV L + P + ++D ++P D Sbjct: 114 YPKILEEAVSVGIGVKSSQVIDQINIYEADRQAMAQAVRALDIKPDALVVDAMNVPVD-- 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD+LM K YP YGF ++ GY T +H +K+ Sbjct: 172 LPQVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFQNNAGYGTKEHIAALKK 231 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR TF P+ + Sbjct: 232 YGPTAIHRKTFAPVSD 247 >gi|315038209|ref|YP_004031777.1| ribonuclease HII [Lactobacillus amylovorus GRL 1112] gi|325956663|ref|YP_004292075.1| ribonuclease HII [Lactobacillus acidophilus 30SC] gi|312276342|gb|ADQ58982.1| ribonuclease HII [Lactobacillus amylovorus GRL 1112] gi|325333228|gb|ADZ07136.1| ribonuclease HII [Lactobacillus acidophilus 30SC] Length = 252 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 121/196 (61%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E KN VAG+DEVGRG LAGPVV AA+I+D + +NDSKK++ ++R L Sbjct: 55 FAYEKEFWAKN-QLVAGVDEVGRGPLAGPVVTAAVIIDHDFDLIDVNDSKKLTPERRLAL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI A+ + I S Q ID+ NI++A A+ AV L + P + ++D ++P D Sbjct: 114 YPKILEEAVSVGIGVKSSQVIDQINIYEADRQAMAQAVRALDIKPDALVVDAMNVPVD-- 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AKV RD+LM K YP YGF ++ GY T +H +K+ Sbjct: 172 LPQVKLIKGDAKSNSIAAASIVAKVFRDKLMDDYDKIYPQYGFQNNAGYGTKEHIAALKK 231 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR TF P+ + Sbjct: 232 YGPTAIHRKTFAPVSD 247 >gi|15676119|ref|NP_273250.1| ribonuclease HII [Neisseria meningitidis MC58] gi|11387100|sp|Q9K1G1|RNH2_NEIMB RecName: Full=Ribonuclease HII; Short=RNase HII gi|7225412|gb|AAF40649.1| ribonuclease HII [Neisseria meningitidis MC58] gi|316985719|gb|EFV64665.1| ribonuclease HII family protein [Neisseria meningitidis H44/76] gi|325135118|gb|EGC57745.1| ribonuclease HII [Neisseria meningitidis M13399] gi|325199404|gb|ADY94859.1| ribonuclease HII [Neisseria meningitidis H44/76] Length = 194 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 108/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAVEWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +++ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|308388411|gb|ADO30731.1| ribonuclease HII [Neisseria meningitidis alpha710] gi|325131049|gb|EGC53774.1| ribonuclease HII [Neisseria meningitidis OX99.30304] gi|325137025|gb|EGC59621.1| ribonuclease HII [Neisseria meningitidis M0579] gi|325145388|gb|EGC67665.1| ribonuclease HII [Neisseria meningitidis M01-240013] gi|325202973|gb|ADY98427.1| ribonuclease HII [Neisseria meningitidis M01-240149] gi|325205284|gb|ADZ00737.1| ribonuclease HII [Neisseria meningitidis M04-240196] gi|325207229|gb|ADZ02681.1| ribonuclease HII [Neisseria meningitidis NZ-05/33] Length = 194 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 109/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ASPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|307249333|ref|ZP_07531327.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251656|ref|ZP_07533561.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256154|ref|ZP_07537941.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262716|ref|ZP_07544344.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306858627|gb|EFM90689.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860853|gb|EFM92861.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865335|gb|EFM97231.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871971|gb|EFN03687.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 186 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 86/185 (46%), Positives = 115/185 (62%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L E+I + A S+ Sbjct: 1 MIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSL 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P L+DG IP A AVIKGDS+ Sbjct: 61 GRAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPTLPM-PAQAVIKGDSLV 119 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR +F P Sbjct: 120 AEISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAP 179 Query: 204 LRNLS 208 ++ + Sbjct: 180 VKKIL 184 >gi|146276125|ref|YP_001166284.1| ribonuclease HII [Rhodobacter sphaeroides ATCC 17025] gi|166226645|sp|A4WNL5|RNH2_RHOS5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|145554366|gb|ABP68979.1| Ribonuclease H [Rhodobacter sphaeroides ATCC 17025] Length = 212 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 124/199 (62%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E+ + + G+DEVGRG LAGPV AA+ L P IP G+NDSKK+ +RE Sbjct: 6 PDWSHESAAFAEGFTCIVGVDEVGRGPLAGPVTAAAVRLFPGRIPEGLNDSKKLPAARRE 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + A +S++ AS + ID+ NI +A+ A+ A+ L P ALIDG IP+ L Sbjct: 66 ALAAEILAVAEVSVAHASVEEIDRLNILQASHLAMARALAGLPCPPDFALIDGHLIPKGL 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + A++KGD++ LSIAAASI+AKV RDR+M +++P YG+ ++ GY T H Q + Sbjct: 126 AHRCRAIVKGDALCLSIAAASIVAKVARDRIMVDLEQQHPGYGWRTNAGYGTRDHLQALL 185 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + HR +F+P+ N+ Sbjct: 186 NLGLTPHHRRSFKPVHNIL 204 >gi|254672745|emb|CBA06746.1| Ribonuclease HII [Neisseria meningitidis alpha275] gi|325203313|gb|ADY98766.1| ribonuclease HII [Neisseria meningitidis M01-240355] Length = 194 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 109/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ASPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|317131439|ref|YP_004090753.1| Ribonuclease H [Ethanoligenens harbinense YUAN-3] gi|315469418|gb|ADU26022.1| Ribonuclease H [Ethanoligenens harbinense YUAN-3] Length = 207 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 117/197 (59%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + V G+DE GRG LAGPV AA+IL + G+NDSKK+S K+RE L Sbjct: 4 LTYEHALYAQGFGTVCGVDEAGRGPLAGPVFAAAVILPRGVMIEGVNDSKKLSEKRREIL 63 Query: 72 YEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I A+ ++SA + I ++NI A+L A+ AV +LQ+ ++AL+DG L Sbjct: 64 FDRIRDQALACAVASADEREIAEYNILGASLLAMRRAVSSLQIPAQAALVDGNR-DPLLT 122 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + V++GD+ IAAASI+AKV+RDR M KYP YGF H GYPT H + I Sbjct: 123 IPSTCVVRGDARCACIAAASILAKVSRDRYMLELDAKYPQYGFAKHKGYPTRAHYEAILR 182 Query: 191 KGPSCIHRLTFRPLRNL 207 GP HRL F LRNL Sbjct: 183 YGPCPAHRLYF--LRNL 197 >gi|255506601|ref|ZP_05382240.1| ribonuclease HII [Chlamydia trachomatis D(s)2923] gi|289525074|emb|CBJ14544.1| ribonuclease HII [Chlamydia trachomatis Sweden2] gi|296434614|gb|ADH16792.1| ribonuclease HII [Chlamydia trachomatis E/150] gi|296438332|gb|ADH20485.1| ribonuclease HII [Chlamydia trachomatis E/11023] Length = 217 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 115/194 (59%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAGIDE GRG LAGPVV A IL + GI+DSKK++ K+R LYE Sbjct: 17 FENQAIEQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76 Query: 74 KI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +L+ P L+DG +P Sbjct: 77 LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPH--KI 134 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 135 PSLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLR 205 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVK 208 >gi|15834918|ref|NP_296677.1| ribonuclease HII [Chlamydia muridarum Nigg] gi|270285088|ref|ZP_06194482.1| ribonuclease HII [Chlamydia muridarum Nigg] gi|270289111|ref|ZP_06195413.1| ribonuclease HII [Chlamydia muridarum Weiss] gi|301336484|ref|ZP_07224686.1| ribonuclease HII [Chlamydia muridarum MopnTet14] gi|11387107|sp|Q9PL10|RNH2_CHLMU RecName: Full=Ribonuclease HII; Short=RNase HII gi|8163191|gb|AAF73545.1| ribonuclease HII [Chlamydia muridarum Nigg] Length = 217 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 85/194 (43%), Positives = 115/194 (59%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E ++ +AG+DE GRG LAGPVV A IL + GI+DSKK+S K+R LYE Sbjct: 17 FEDQAIKQGYSRIAGVDEAGRGPLAGPVVAGACILPGGKLFLGIDDSKKLSPKQRRYLYE 76 Query: 74 KI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +L+ P L+DG +P + Sbjct: 77 LLLEDPEVTCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPHE--I 134 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGDS S+SIAAASIIAK RD LMR H +YP+YGFD H GY T H Q +K+ Sbjct: 135 PCLKIIKGDSRSVSIAAASIIAKEYRDELMRKLHSEYPEYGFDKHKGYGTVAHLQALKQF 194 Query: 192 GPSCIHRLTFRPLR 205 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVK 208 >gi|312883822|ref|ZP_07743541.1| ribonuclease HII [Vibrio caribbenthicus ATCC BAA-2122] gi|309368571|gb|EFP96104.1| ribonuclease HII [Vibrio caribbenthicus ATCC BAA-2122] Length = 202 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 109/186 (58%), Gaps = 2/186 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S KKR L+ +I A Sbjct: 13 GYQSIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSEKKRLALFPEIKEKALA 72 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 SI S IDK NI AT+ A+ A+ENL ++P ALIDG P A +V+KGD Sbjct: 73 WSIGRCSPVEIDKLNILHATMVAMQRAIENLNIMPDLALIDGNRCPHLPMA-AQSVVKGD 131 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 I+AASIIAKV RD M YP+YGF H GYPT H I+ G HR + Sbjct: 132 LRVAEISAASIIAKVVRDSEMAQLDSLYPEYGFAQHKGYPTKAHLNAIEAHGVIEQHRKS 191 Query: 201 FRPLRN 206 F+P++ Sbjct: 192 FKPVKR 197 >gi|227513336|ref|ZP_03943385.1| ribonuclease HII [Lactobacillus buchneri ATCC 11577] gi|227083209|gb|EEI18521.1| ribonuclease HII [Lactobacillus buchneri ATCC 11577] Length = 255 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 115/196 (58%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E + + VAG+DEVGRG LAGPVV A IL + +NDSK+++ + R L Sbjct: 60 FKYERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIRARL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I AI I + ++ ID+ NI++AT A+ AV + + I ++ +P Sbjct: 120 APQIKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVN--NLTQQPDEIIVDAMQIPVP 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S+S++AASI+AKV RD LM ++YP+Y F + GY TAKH +K+ Sbjct: 178 IHQTRLIKGDAKSISVSAASIVAKVYRDNLMDQYAQQYPEYDFRHNAGYGTAKHLSALKK 237 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR TF P++N Sbjct: 238 YGATPIHRKTFAPIKN 253 >gi|315179359|gb|ADT86273.1| ribonuclease HII [Vibrio furnissii NCTC 11218] Length = 206 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 116/200 (58%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ +AG+DEVGRG L G VV AA+ILDPN+ G+NDSKK+S KK Sbjct: 8 ELPPFEI-----PSGYHLIAGVDEVGRGPLVGDVVTAAVILDPNHPIEGLNDSKKLSEKK 62 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A S+ S Q ID+ NI +AT+ A+ AV+ L + P L+DG IP Sbjct: 63 RLALLPEIQQKALAWSVGRCSPQEIDELNIFQATMLAMQRAVDGLAIKPDLVLVDGNKIP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 A AV+KGD I+AASIIAKV RD+ M K YP +GF H GYPT H + Sbjct: 123 SLPM-DAQAVVKGDLRVAQISAASIIAKVVRDQEMEELDKVYPQFGFAKHKGYPTKAHFE 181 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 182 AIEQHGVIDQHRRSFGPVKR 201 >gi|88857963|ref|ZP_01132605.1| RNAse HII [Pseudoalteromonas tunicata D2] gi|88819580|gb|EAR29393.1| RNAse HII [Pseudoalteromonas tunicata D2] Length = 194 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 80/188 (42%), Positives = 112/188 (59%), Gaps = 2/188 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 N +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ KKR+ L +I A Sbjct: 7 NYQFIAGVDEVGRGPLVGDVVTAAVILDPTKPIVGLADSKKLTDKKRQALAIEIKEKALC 66 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I+ AS ID+ NI AT+ A+ AV L + +DG +P+ A AV+KGD Sbjct: 67 YCIARASVAEIDELNILHATMLAMTRAVAGLSIPAEFVFVDGNRLPKLS-VPAQAVVKGD 125 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD M ++P+YGF H GYPT H + +++ G + HR + Sbjct: 126 SLVAEISAASILAKVARDDEMIALDAQFPEYGFAGHKGYPTKAHLEALQQHGVTEHHRKS 185 Query: 201 FRPLRNLS 208 F+P++ L Sbjct: 186 FKPVKILL 193 >gi|320107359|ref|YP_004182949.1| Ribonuclease H [Terriglobus saanensis SP1PR4] gi|319925880|gb|ADV82955.1| Ribonuclease H [Terriglobus saanensis SP1PR4] Length = 248 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 88/208 (42%), Positives = 128/208 (61%), Gaps = 13/208 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP---FGI 57 + C+ P E +R +AG+DEVGRGAL GPVV AA+IL G+ Sbjct: 21 LVCSDAP-------EQALRHLGYLVIAGVDEVGRGALCGPVVAAAVILPEEMGWLATKGL 73 Query: 58 NDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK+++ ++REEL +I S A SI++ + ID+ NI++A+ A+ AV+ L V P Sbjct: 74 RDSKQLTREQREELDAEIRSVALAASIAAVDAETIDRVNIYQASRMAMQMAVDALTVRPD 133 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 LID I + PC +I GDS+SLSIAAAS++AKV RD +MR +++P YG +SH Sbjct: 134 HLLIDAMRISD--PCAQTRLIYGDSLSLSIAAASVVAKVYRDAMMRKFAEEHPQYGMESH 191 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 GY T +H++ +KE GP+ +HR +F P+ Sbjct: 192 KGYGTPEHRRALKEHGPTPLHRRSFAPV 219 >gi|190571269|ref|YP_001975627.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018665|ref|ZP_03334473.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238056783|sp|B3CM59|RNH2_WOLPP RecName: Full=Ribonuclease HII; Short=RNase HII gi|190357541|emb|CAQ54978.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995616|gb|EEB56256.1| ribonuclease HII [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 197 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 90/199 (45%), Positives = 123/199 (61%), Gaps = 6/199 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68 P F LE + +AG+DEVGRG LAGPV+ AA+I D + + GINDSKK++ K R Sbjct: 4 PDFSLENTLS----GIIAGVDEVGRGPLAGPVISAAVIFTDRDTVIDGINDSKKLTPKCR 59 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LYEKITS A I AS + I+ +NI +AT ++ A+ NL + L+DG P + Sbjct: 60 QVLYEKITSVAKFGIGMASVEEINSYNILQATKLSMKRALANLNLELDYVLVDGN-QPPE 118 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + Q +++ GDS+S+SIAAASI+AKVTRDRLM H K+P Y + + GY T +H I Sbjct: 119 VKWQVKSIVNGDSLSISIAAASIVAKVTRDRLMEELHNKHPQYNWYKNKGYGTKEHLSAI 178 Query: 189 KEKGPSCIHRLTFRPLRNL 207 G + HR F P+R L Sbjct: 179 GLHGITKHHRKNFAPIRIL 197 >gi|218767115|ref|YP_002341627.1| ribonuclease HII [Neisseria meningitidis Z2491] gi|11387099|sp|Q9JX40|RNH2_NEIMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|121051123|emb|CAM07394.1| ribonuclease HII [Neisseria meningitidis Z2491] gi|319411322|emb|CBY91733.1| ribonuclease HII (RNase HII) [Neisseria meningitidis WUE 2594] Length = 194 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 108/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 AGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +++ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|325143205|gb|EGC65545.1| ribonuclease HII [Neisseria meningitidis 961-5945] gi|325197479|gb|ADY92935.1| ribonuclease HII [Neisseria meningitidis G2136] Length = 194 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 108/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 AGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|307260586|ref|ZP_07542278.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869663|gb|EFN01448.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 186 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 85/185 (45%), Positives = 114/185 (61%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L +I + A S+ Sbjct: 1 MIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSKKLSEKKRLLLAGEIKAKALCWSL 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P L+DG IP A AVIKGDS+ Sbjct: 61 GRAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPTLPM-PAQAVIKGDSLV 119 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR +F P Sbjct: 120 AEISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAP 179 Query: 204 LRNLS 208 ++ + Sbjct: 180 VKKIL 184 >gi|262279707|ref|ZP_06057492.1| ribonuclease H [Acinetobacter calcoaceticus RUH2202] gi|262260058|gb|EEY78791.1| ribonuclease H [Acinetobacter calcoaceticus RUH2202] Length = 188 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 117/183 (63%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A SI Sbjct: 2 FIAGVDEAGRGPLVGSVVAAAVILDPNNPIVGLNDSKKLTEKKREKLFIEIQEKALAWSI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+H ID+ NI +AT A+ AV+ L+ P+ ++DG IP+ + A+I GD+ Sbjct: 62 AEATHGEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIIIPCEAIIGGDASH 121 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M+ ++YP +GF H GYPT H + I G HR ++ P Sbjct: 122 AEISAASILAKVTRDRQMQELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAP 181 Query: 204 LRN 206 ++ Sbjct: 182 VKR 184 >gi|260767811|ref|ZP_05876746.1| ribonuclease HII [Vibrio furnissii CIP 102972] gi|260617320|gb|EEX42504.1| ribonuclease HII [Vibrio furnissii CIP 102972] Length = 206 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 116/200 (58%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE+ +AG+DEVGRG L G VV AA+ILDPN+ G+NDSKK+S KK Sbjct: 8 ELPPFEI-----PSGYHLIAGVDEVGRGPLVGDVVTAAVILDPNHPIEGLNDSKKLSEKK 62 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L +I A S+ S Q ID+ NI +AT+ A+ AV+ L + P L+DG IP Sbjct: 63 RLALLPEIQQKALAWSVGRCSPQEIDELNIFQATMLAMQRAVDGLAIKPDLVLVDGNKIP 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 A AV+KGD I+AASIIAKV RD+ M K YP +GF H GYPT H + Sbjct: 123 SLPM-DAQAVVKGDLRVAQISAASIIAKVVRDQEMEELDKAYPQFGFAKHKGYPTKAHFE 181 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 182 AIEQHGVIDQHRRSFGPVKR 201 >gi|329850294|ref|ZP_08265139.1| ribonuclease HII family protein [Asticcacaulis biprosthecum C19] gi|328840609|gb|EGF90180.1| ribonuclease HII family protein [Asticcacaulis biprosthecum C19] Length = 204 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 89/200 (44%), Positives = 115/200 (57%), Gaps = 5/200 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E + V G+DE GRG AGP+ VAA+ILDP P GI+DSK ++ +R + Sbjct: 3 DFSHEQRIA----GLVCGVDEAGRGPCAGPLCVAAVILDPARTPEGIDDSKALTEARRFQ 58 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I +AI S+ + S ID NI ATL+ + AV L ALIDG P+ L Sbjct: 59 LEPLIKHAAIAWSVITMSTDDIDSMNILAATLEGMSRAVMALNPNAHHALIDGNRCPKQL 118 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A AVI GD++SLSIAAASI+AK RDR+M YP YGF H GY T H + ++ Sbjct: 119 SISATAVIGGDALSLSIAAASILAKTARDRIMIELDAVYPQYGFKRHKGYQTGAHLEALR 178 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 GPS +HR ++ LR LS+ Sbjct: 179 VHGPSPVHRKSWATLRQLSL 198 >gi|164688555|ref|ZP_02212583.1| hypothetical protein CLOBAR_02200 [Clostridium bartlettii DSM 16795] gi|164602968|gb|EDQ96433.1| hypothetical protein CLOBAR_02200 [Clostridium bartlettii DSM 16795] Length = 255 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 79/190 (41%), Positives = 109/190 (57%), Gaps = 2/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + G+DE GRG LAGPVV + ++ + INDSKK+S KREEL+ Sbjct: 62 TFENEGYANGYLYIGGVDEAGRGPLAGPVVASVVVFEKGTKIPYINDSKKLSEAKREELF 121 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A I ++ ID++NI AT A+ A+ L+ P L+D + DL Sbjct: 122 DIIKEQALDYGIGIVDNEEIDEYNILNATYMAMNKALNALKKKPDYLLLDAVT-IPDLDI 180 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + F +IKGD+ S+SIA ASI+AKVTRDRLM + YP YGF H GY T +H + I++ Sbjct: 181 KQFPIIKGDAKSISIAGASILAKVTRDRLMYKYDEIYPQYGFKHHKGYGTKEHYEAIEKY 240 Query: 192 GPSCIHRLTF 201 G + IHR +F Sbjct: 241 GITPIHRKSF 250 >gi|315658466|ref|ZP_07911338.1| ribonuclease HII [Staphylococcus lugdunensis M23590] gi|315496795|gb|EFU85118.1| ribonuclease HII [Staphylococcus lugdunensis M23590] Length = 255 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 4/197 (2%) Query: 14 LEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++++ + GIDEVGRG LAGPVV A+IL+ N+ G+NDSKK+S R +L Sbjct: 61 YEQEILQQQPDAIICGIDEVGRGPLAGPVVACAVILNANHHYLGLNDSKKVSAVNRAQLN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + + + AS ID+ NI++AT A+ A+ LQV P LID ++ D Sbjct: 121 QDLMDNVRGYAYGIASAAEIDQLNIYRATQVAMQRAINQLQVRPTHLLID--AMSIDSTI 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD+ S+SIAAASI+AK RD LMR + YP YGFD +VGY T H +++ Sbjct: 179 SQTAIIKGDAKSVSIAAASIMAKEYRDHLMRDYAQVYPHYGFDKNVGYGTKAHLAGLEQY 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFEPVKSML 255 >gi|229918612|ref|YP_002887258.1| ribonuclease H [Exiguobacterium sp. AT1b] gi|229470041|gb|ACQ71813.1| Ribonuclease H [Exiguobacterium sp. AT1b] Length = 250 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 72/194 (37%), Positives = 108/194 (55%), Gaps = 3/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + K V G+DEVGRG LAGPVV AA++L G+NDSKK++ R+ Y Sbjct: 60 YEREWKHKGYTRVVGVDEVGRGPLAGPVVAAAVLLPDGFYLPGLNDSKKMTKSARDAAYA 119 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A + + ID+ NI++AT A+ A+ + + + + +L Sbjct: 120 HIIEVAEVGVGIVEPAIIDEINIYEATKLAMTEAIHQVGEVDALLIDA---MKLELDIPQ 176 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD++S+SIAAAS++AKV RDR+M YP YGF + GY T H + ++ G Sbjct: 177 QSLIKGDTLSVSIAAASVVAKVVRDRMMEEYDLTYPGYGFAKNAGYGTETHLEGLRRLGV 236 Query: 194 SCIHRLTFRPLRNL 207 + IHR TF P++ + Sbjct: 237 TPIHRRTFAPIKYM 250 >gi|262372179|ref|ZP_06065458.1| ribonuclease HII [Acinetobacter junii SH205] gi|262312204|gb|EEY93289.1| ribonuclease HII [Acinetobacter junii SH205] Length = 188 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A SI Sbjct: 2 FVAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIKEKALAWSI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+H ID+ NI +AT A+ AVENL+ P ++DG IP+ + A++ GD+ Sbjct: 62 AEATHTEIDEMNILQATFLAMRRAVENLKTTPHKVIVDGNQIPKGIEIACEAIVGGDATH 121 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M+ + YPDYGF H GYPT H + I G HR ++ P Sbjct: 122 AEISAASILAKVTRDHQMKTLDELYPDYGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAP 181 Query: 204 LRN 206 ++ Sbjct: 182 VKK 184 >gi|259907556|ref|YP_002647912.1| Ribonuclease HII [Erwinia pyrifoliae Ep1/96] gi|224963178|emb|CAX54662.1| Ribonuclease HII [Erwinia pyrifoliae Ep1/96] gi|283477396|emb|CAY73312.1| rnhB [Erwinia pyrifoliae DSM 12163] Length = 207 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 W +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A S Sbjct: 10 WLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDRALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS+ Sbjct: 70 LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPQLAM-PSRAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP YGF H GYPTA H + + G + HR +F Sbjct: 129 VPEISAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLARFGVTPQHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|319408204|emb|CBI81857.1| Ribonuclease HII [Bartonella schoenbuchensis R1] Length = 223 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 100/203 (49%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++P +P F E + ++ + +AG+DEVGRG LAGPVV AA+ILD N+IP G+NDSKK S Sbjct: 13 NVPLQPDFSHELDLHKQGFFYIAGVDEVGRGPLAGPVVTAAVILDKNHIPEGLNDSKKFS 72 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R +LY KI +A IS++S + ID+ +I KATL+A+ V L + L+DGR Sbjct: 73 AQQRNQLYGKILQNALAISVASICARVIDQSDIRKATLEAMRRCVVGLSIPAHYVLVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP L C A A+IKGD S+SIAAASI+AKVTRDR+M A + Y YG + HVGY T Sbjct: 133 DIPPHLLCPATALIKGDQRSVSIAAASIVAKVTRDRMMECAGRVYESYGLEKHVGYATVA 192 Query: 184 HQQVIKEKGP-SCIHRLTFRPLR 205 H+ I + GP +HR +F PL+ Sbjct: 193 HRTAIAKYGPILGLHRYSFAPLK 215 >gi|126698859|ref|YP_001087756.1| ribonuclease HII [Clostridium difficile 630] gi|254974807|ref|ZP_05271279.1| ribonuclease HII [Clostridium difficile QCD-66c26] gi|255092195|ref|ZP_05321673.1| ribonuclease HII [Clostridium difficile CIP 107932] gi|255100280|ref|ZP_05329257.1| ribonuclease HII [Clostridium difficile QCD-63q42] gi|255306219|ref|ZP_05350391.1| ribonuclease HII [Clostridium difficile ATCC 43255] gi|255313934|ref|ZP_05355517.1| ribonuclease HII [Clostridium difficile QCD-76w55] gi|255516614|ref|ZP_05384290.1| ribonuclease HII [Clostridium difficile QCD-97b34] gi|255649714|ref|ZP_05396616.1| ribonuclease HII [Clostridium difficile QCD-37x79] gi|260682869|ref|YP_003214154.1| ribonuclease HII [Clostridium difficile CD196] gi|260686467|ref|YP_003217600.1| ribonuclease HII [Clostridium difficile R20291] gi|306519826|ref|ZP_07406173.1| ribonuclease HII [Clostridium difficile QCD-32g58] gi|123363581|sp|Q18BC9|RNH2_CLOD6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|115250296|emb|CAJ68118.1| Ribonuclease HII (RNase HII) [Clostridium difficile] gi|260209032|emb|CBA62137.1| ribonuclease HII [Clostridium difficile CD196] gi|260212483|emb|CBE03398.1| ribonuclease HII [Clostridium difficile R20291] Length = 255 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 80/196 (40%), Positives = 115/196 (58%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E +K + GIDE GRG LAGPVV + ++ + G+NDSKK+S KR+EL+E Sbjct: 63 FENEGYDKGYLYIGGIDEAGRGPLAGPVVASVVVFKKDTKIEGVNDSKKLSEAKRDELFE 122 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A I +++ ID+ NI AT A+ A+ L+ P L+D + + Sbjct: 123 VIKEEALDYGIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDA-ATIPGIDIS 181 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGDS S+SIAAASI+AKVTRD +M + YP+YGF SH GY T +H + I++ G Sbjct: 182 QNPIVKGDSKSISIAAASILAKVTRDSIMYQYDRVYPEYGFKSHKGYGTKEHYEAIEKYG 241 Query: 193 PSCIHRLTFRPLRNLS 208 + IHR +F L+N+ Sbjct: 242 ITPIHRKSF--LKNIL 255 >gi|77457342|ref|YP_346847.1| ribonuclease HII [Pseudomonas fluorescens Pf0-1] gi|97189197|sp|Q3KH98|RNH2_PSEPF RecName: Full=Ribonuclease HII; Short=RNase HII gi|77381345|gb|ABA72858.1| ribonuclease HII [Pseudomonas fluorescens Pf0-1] Length = 213 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 116/184 (63%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ KRE+LY++I A Sbjct: 20 ELVAGVDEVGRGPLCGAVVTAAVILDPNRPILGLNDSKKLTEAKREKLYDEICEKALSWC 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AV L + P+ A+IDG P+ ++ AV+KGDS Sbjct: 80 IARAEVEEIDELNILHATMLAMQRAVAGLHIQPKLAMIDGNRCPKLPM-RSEAVVKGDSK 138 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 139 VPAIAAASILAKVSRDREMAAFELIYPGYGISGHKGYPTPVHLEALVRLGPTPIHRRSFA 198 Query: 203 PLRN 206 P+R Sbjct: 199 PVRQ 202 >gi|298290630|ref|YP_003692569.1| ribonuclease H [Starkeya novella DSM 506] gi|296927141|gb|ADH87950.1| Ribonuclease H [Starkeya novella DSM 506] Length = 221 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 93/198 (46%), Positives = 123/198 (62%), Gaps = 1/198 (0%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 ++P F E + PVAG+DEVGRG LAGPVV A++LDP +P G++DSKK++ + Sbjct: 6 QKPDFSTERAAWKAGDVPVAGVDEVGRGPLAGPVVACAVVLDPKRVPKGLDDSKKLTAVQ 65 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 RE L+E I ++A +S++ A ID HNI +ATL A AV L PR L+DG P Sbjct: 66 REALFEVICATAEVSLAFAPPARIDGHNIRQATLWAQAKAVAGLPCTPRLVLVDGNDPPP 125 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 C A+I GD + SIAAASI+AKVTRDRLM +P YGF+ H+GY T +HQQ Sbjct: 126 I-GCAVRAIIGGDGLVASIAAASIVAKVTRDRLMASLGLAHPGYGFERHMGYSTPEHQQA 184 Query: 188 IKEKGPSCIHRLTFRPLR 205 + G HR +F P+R Sbjct: 185 LAALGACRHHRTSFAPVR 202 >gi|238855692|ref|ZP_04645989.1| ribonuclease HII [Lactobacillus jensenii 269-3] gi|260664447|ref|ZP_05865299.1| ribonuclease HII [Lactobacillus jensenii SJ-7A-US] gi|282932206|ref|ZP_06337653.1| ribonuclease HII [Lactobacillus jensenii 208-1] gi|313472152|ref|ZP_07812644.1| ribonuclease HII [Lactobacillus jensenii 1153] gi|238831677|gb|EEQ24017.1| ribonuclease HII [Lactobacillus jensenii 269-3] gi|239529524|gb|EEQ68525.1| ribonuclease HII [Lactobacillus jensenii 1153] gi|260561512|gb|EEX27484.1| ribonuclease HII [Lactobacillus jensenii SJ-7A-US] gi|281303656|gb|EFA95811.1| ribonuclease HII [Lactobacillus jensenii 208-1] Length = 252 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 92/194 (47%), Positives = 119/194 (61%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E VAG+DEVGRG LAGPVV AA++LD + +NDSKK+S KKR EL Sbjct: 55 FQYEQKAWAAG-SIVAGVDEVGRGPLAGPVVTAAVVLDDSFDLVEVNDSKKLSPKKRLEL 113 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A+ + I S + IDK NI++A A+ AV NL + P L+D ++P D Sbjct: 114 YPRILDKAVAVGIGVGSPELIDKINIYEADRVAMAQAVNNLALRPDLLLVDAMNVPVD-- 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGDS S SIAAASI+AKV RD LM K YP Y F+ + GY TAKH +KE Sbjct: 172 IKQIELIKGDSKSNSIAAASIVAKVFRDELMNDYAKVYPQYDFEHNAGYGTAKHLAALKE 231 Query: 191 KGPSCIHRLTFRPL 204 G + IHR +F P+ Sbjct: 232 FGATPIHRRSFSPV 245 >gi|269836504|ref|YP_003318732.1| Ribonuclease H [Sphaerobacter thermophilus DSM 20745] gi|269785767|gb|ACZ37910.1| Ribonuclease H [Sphaerobacter thermophilus DSM 20745] Length = 233 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 88/201 (43%), Positives = 125/201 (62%), Gaps = 3/201 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKR 68 P +EA + + + VAG+DEVGRG +AGPVV AA IL P G+ DSK +S ++R Sbjct: 25 PSIHIEAELWARGLRLVAGVDEVGRGCVAGPVVAAACILPPGIEDIPGVRDSKTLSARQR 84 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L E+I A I + +AS + ID++NI +A+ A+ A+ L L DGR +PE Sbjct: 85 ERLAEEIRRVALGIGLGAASRREIDQYNIRQASALAMRRALARLGAWDF-VLYDGRPLPE 143 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 P + AV+KGD+ LSIA ASI+AKVTRD LM +++P+YG++ + GY TA+H Sbjct: 144 LDPERTMAVVKGDASCLSIACASILAKVTRDALMARLARRHPEYGWERNAGYGTAEHLDA 203 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 + GP+ HR TF P+R+L Sbjct: 204 LLRVGPTPHHRRTFAPVRDLL 224 >gi|15604747|ref|NP_219531.1| ribonuclease HII [Chlamydia trachomatis D/UW-3/CX] gi|255310830|ref|ZP_05353400.1| ribonuclease HII [Chlamydia trachomatis 6276] gi|255317130|ref|ZP_05358376.1| ribonuclease HII [Chlamydia trachomatis 6276s] gi|7227924|sp|O84032|RNH2_CHLTR RecName: Full=Ribonuclease HII; Short=RNase HII gi|3328419|gb|AAC67619.1| Ribonuclease HII [Chlamydia trachomatis D/UW-3/CX] gi|296436469|gb|ADH18639.1| ribonuclease HII [Chlamydia trachomatis G/11222] gi|297748160|gb|ADI50706.1| Ribonuclease HII [Chlamydia trachomatis D-EC] gi|297749040|gb|ADI51718.1| Ribonuclease HII [Chlamydia trachomatis D-LC] Length = 217 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 115/194 (59%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAG+DE GRG LAGPVV A IL + GI+DSKK++ K+R LYE Sbjct: 17 FENQAIEQGYSQVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76 Query: 74 KI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +L+ P L+DG +P Sbjct: 77 LLLEDPEVDCGVGVISVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPH--KV 134 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 135 PSLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLR 205 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVK 208 >gi|310764936|gb|ADP09886.1| Ribonuclease HII [Erwinia sp. Ejp617] Length = 207 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A S Sbjct: 10 RLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P + AV+KGDS+ Sbjct: 70 LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPALAM-PSRAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP YGF H GYPTA H + + G + HR +F Sbjct: 129 VPEISAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLARFGVTPQHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|303228938|ref|ZP_07315748.1| ribonuclease HII [Veillonella atypica ACS-134-V-Col7a] gi|302516352|gb|EFL58284.1| ribonuclease HII [Veillonella atypica ACS-134-V-Col7a] Length = 266 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 132/197 (67%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDEGLYHVAGVDEVGRGPIAGPVTVAAVILPPMTLISGLNDSKKLTEEKREAL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I + A+ +S S S + ID+ NI++AT A+Y A+ L V + + D DL Sbjct: 123 YDIIMNEAVAVSCISYSPEKIDELNIYEATRQAMYEAIRTLDVPAEAVVADAMK-LPDLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++YP YGF H GY T H++ +++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDEEYPGYGFGIHKGYYTELHKEALEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|297584021|ref|YP_003699801.1| ribonuclease H [Bacillus selenitireducens MLS10] gi|297142478|gb|ADH99235.1| Ribonuclease H [Bacillus selenitireducens MLS10] Length = 258 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 108/194 (55%), Gaps = 1/194 (0%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +R +AG+DEVGRG LAGPV A +IL + G+ DSKK+S KR Sbjct: 58 SFERSLRLSGYRLIAGVDEVGRGPLAGPVTAACVILPESPDLKGLTDSKKLSEAKRHFYA 117 Query: 73 EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I AI AS + ID+ NI++A+ A+ AV +Q + ++ + Sbjct: 118 AEIQKVAIAAETGEASPEEIDRLNIYEASKLAMRRAVAAVQQKTAIDFLLIDAMTLPIDL 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ SLSIAAAS+IAKV RD M+ + +P+YG SH+GY T +H + E Sbjct: 178 PQESLIKGDARSLSIAAASVIAKVERDNQMKELDRAFPEYGLASHMGYGTREHLAALDEH 237 Query: 192 GPSCIHRLTFRPLR 205 GP HR +F P+R Sbjct: 238 GPQFFHRKSFSPVR 251 >gi|86146875|ref|ZP_01065194.1| ribonuclease HII [Vibrio sp. MED222] gi|85835327|gb|EAQ53466.1| ribonuclease HII [Vibrio sp. MED222] Length = 206 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 115/191 (60%), Gaps = 2/191 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L +I Sbjct: 14 YPQGYQLFAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLNDSKKLSEKKRLALLPEIKEK 73 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A S+ S Q ID+ NI +AT+ A+ A+ L V P ALIDG +PE A++ Sbjct: 74 ALAWSVGRCSPQEIDELNILQATMVAMQRAIAGLSVQPDIALIDGNRVPELPMA-GLAIV 132 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I+AASIIAKV RD+ M K +P++GF H GYPT H + I++ G + + Sbjct: 133 KGDLRVAEISAASIIAKVVRDQEMEELDKLHPEFGFAKHKGYPTKAHFEAIEKHGVTEHY 192 Query: 198 RLTFRPLRNLS 208 R +F+P++ + Sbjct: 193 RKSFKPVKRIL 203 >gi|255655274|ref|ZP_05400683.1| ribonuclease HII [Clostridium difficile QCD-23m63] gi|296451258|ref|ZP_06892998.1| ribonuclease H [Clostridium difficile NAP08] gi|296880390|ref|ZP_06904353.1| ribonuclease H [Clostridium difficile NAP07] gi|296259864|gb|EFH06719.1| ribonuclease H [Clostridium difficile NAP08] gi|296428631|gb|EFH14515.1| ribonuclease H [Clostridium difficile NAP07] Length = 255 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 80/196 (40%), Positives = 114/196 (58%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E K + GIDE GRG LAGPVV + ++ + G+NDSKK+S KR+EL+E Sbjct: 63 FENEGYNKGYLYIGGIDEAGRGPLAGPVVASVVVFKKDTKIEGVNDSKKLSEAKRDELFE 122 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A I +++ ID+ NI AT A+ A+ L+ P L+D + + Sbjct: 123 VIKEEALDYGIGIVNNEEIDEFNILNATYMAMKKAINCLKKAPDYLLVDA-ATIPGIDIA 181 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGDS S+SIAAASI+AKVTRD +M + YP+YGF SH GY T +H + I++ G Sbjct: 182 QNPIVKGDSKSISIAAASILAKVTRDSIMYQYDRVYPEYGFKSHKGYGTKEHYEAIEKYG 241 Query: 193 PSCIHRLTFRPLRNLS 208 + IHR +F L+N+ Sbjct: 242 ITPIHRKSF--LKNIL 255 >gi|269303000|gb|ACZ33100.1| ribonuclease HII [Chlamydophila pneumoniae LPCoLN] Length = 214 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + VAGIDE GRG LAGPVV +A IL + G+NDSKK+S K+R ++ Sbjct: 16 AFEKELVSEGFSVVAGIDEAGRGPLAGPVVASACILPKGKVFPGVNDSKKLSPKQRAQVR 75 Query: 73 EKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + I S + ID+ NI +AT +A+ A+ +L + P L+DG +P D Sbjct: 76 DALMQDPEVCFGIGVISVERIDQVNILEATKEAMLQAISSLPISPDILLVDGLYLPHD-- 133 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I+GD+ S SIAAASI+AK RD LM H+ YP+YGFD H GY T+ H + I+ Sbjct: 134 IPCKKIIQGDAKSASIAAASILAKEHRDDLMLQLHRLYPEYGFDRHKGYGTSLHVEAIRR 193 Query: 191 KGPSCIHRLTFRPLRNL 207 GPS HR +F P++ + Sbjct: 194 YGPSPCHRKSFSPIKQM 210 >gi|260913166|ref|ZP_05919648.1| ribonuclease HII [Pasteurella dagmatis ATCC 43325] gi|260632753|gb|EEX50922.1| ribonuclease HII [Pasteurella dagmatis ATCC 43325] Length = 197 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 91/190 (47%), Positives = 119/190 (62%), Gaps = 2/190 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 ++ +AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKR L E+I Sbjct: 5 YPTDVELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLNDSKKLSEKKRLALAEEIKQK 64 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A S+ A + ID+ NI AT+ A+ AVENL++ P L+DG +P D+ A A++ Sbjct: 65 ALAWSLGRAEPEEIDELNILHATMLAMKRAVENLKIQPHLVLVDGNRVP-DVVMPAQAIV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ I+AASI+AKV RD M K+YP Y F H GYPT H + + E GP H Sbjct: 124 KGDSLVAEISAASILAKVARDHEMEELDKQYPQYAFAKHKGYPTKLHLEKLAEFGPLPEH 183 Query: 198 RLTFRPLRNL 207 R +F P+R L Sbjct: 184 RRSFSPVRKL 193 >gi|227510328|ref|ZP_03940377.1| ribonuclease HII [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189980|gb|EEI70047.1| ribonuclease HII [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 115/196 (58%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E + + VAG+DEVGRG LAGPVV A IL + +NDSK+++ + R L Sbjct: 60 FKYERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIRARL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I AI I + ++ ID+ NI++AT A+ AV + + I ++ +P Sbjct: 120 APQIKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVN--NLTQQPDEIIVDAMQIAVP 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S+S++AASI+AKV RD LM ++YP+Y F + GY TAKH +K+ Sbjct: 178 IHQTRLIKGDAKSISVSAASIVAKVYRDTLMDQYAQQYPEYDFKHNAGYGTAKHLSALKK 237 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR TF P++N Sbjct: 238 YGATPIHRKTFAPVKN 253 >gi|289550965|ref|YP_003471869.1| Ribonuclease HII [Staphylococcus lugdunensis HKU09-01] gi|289180497|gb|ADC87742.1| Ribonuclease HII [Staphylococcus lugdunensis HKU09-01] Length = 255 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 4/197 (2%) Query: 14 LEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++++ + GIDEVGRG LAGPVV A+IL+ N+ G+NDSKK+S R +L Sbjct: 61 YEQEILQQQPDAIICGIDEVGRGPLAGPVVACAVILNANHHYLGLNDSKKVSAVNRAQLN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + ++ + AS ID+ NI++AT A+ A+ LQV P LID ++ D Sbjct: 121 QDLMANVRGYAYGIASAAEIDQLNIYRATQVAMQRAINQLQVRPTHLLID--AMSIDSTI 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD+ S+SIAAASI+AK RD LMR + YP YGFD +VGY T H +K+ Sbjct: 179 SQTAIIKGDAKSVSIAAASIMAKEYRDHLMRDYAQVYPYYGFDKNVGYGTKAHLAGLKQY 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G + IHR TF P++++ Sbjct: 239 GVTPIHRRTFEPVKSML 255 >gi|220906598|ref|YP_002481909.1| ribonuclease HII [Cyanothece sp. PCC 7425] gi|219863209|gb|ACL43548.1| Ribonuclease H [Cyanothece sp. PCC 7425] Length = 206 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 77/202 (38%), Positives = 121/202 (59%), Gaps = 3/202 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKIS 64 + + P ++E ++ + GIDEVGRG L+GPVV AA++L G+ DSK +S Sbjct: 1 MVQIPDLQVEQTFWQRGQLRLVGIDEVGRGCLSGPVVAAAVLLPAYCEPIPGVRDSKTLS 60 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++R+ L +KI AI + I +AS I++ NI +AT A+ A++ + LIDGR Sbjct: 61 AQRRQVLDQKIRQQAIAVGIGAASVAEINQVNILQATYLAMQRALQRIG-GYDHLLIDGR 119 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P P A+++GD+ S +IA ASI+AKV RDR M+ ++YP YG++ +VGY T + Sbjct: 120 PVPVFEPEHHTAIVEGDASSYAIACASIVAKVRRDRFMQHLARRYPGYGWEQNVGYGTKQ 179 Query: 184 HQQVIKEKGPSCIHRLTFRPLR 205 H I G + HR +F+P++ Sbjct: 180 HLAAITSLGVTPHHRRSFKPVQ 201 >gi|113868020|ref|YP_726509.1| ribonuclease HII [Ralstonia eutropha H16] gi|123133958|sp|Q0KA30|RNH2_RALEH RecName: Full=Ribonuclease HII; Short=RNase HII gi|113526796|emb|CAJ93141.1| Ribonuclease HII [Ralstonia eutropha H16] Length = 238 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 118/200 (59%), Gaps = 5/200 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P L+ + + G+DE GRG LAGPV AA+ILDP G+ DSK ++ KRE Sbjct: 9 PQMGLDLAPAAAAVQRLCGVDEAGRGPLAGPVYAAAVILDPKRPIRGLADSKILTAAKRE 68 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSI 125 +LYEKI A I+ A+ + ID NI A++ A+ AV+ ++P +DG Sbjct: 69 QLYEKICERALGWHIAFATVEEIDTLNILHASMLAMQRAVQGLAASGIVPDLVQVDGNRC 128 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P A+++GD++ +I+AASI+AKV RDR +R+ H++YP YGFDSHVGY T +H Sbjct: 129 PRVPF-PVEAIVQGDALVKAISAASILAKVARDRELRVLHERYPQYGFDSHVGYGTPQHL 187 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 + E G + HR +F P+R Sbjct: 188 AALAEFGATPHHRRSFAPVR 207 >gi|78224061|ref|YP_385808.1| ribonuclease HII [Geobacter metallireducens GS-15] gi|97182538|sp|Q39RP1|RNH2_GEOMG RecName: Full=Ribonuclease HII; Short=RNase HII gi|78195316|gb|ABB33083.1| RNase HII [Geobacter metallireducens GS-15] Length = 213 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 93/205 (45%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 + I ER + E +V VAG+DE GRG LAGPVV AA+IL G++DSK Sbjct: 5 LFDDIGERSLWTFENLVSRNGFHAVAGVDEAGRGPLAGPVVAAAVILPQGAELPGVDDSK 64 Query: 62 KISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K+S KRE L+ I+ A + + A H ID+ NI +ATL A+ AV L V P LI Sbjct: 65 KLSAPKREHLFGLISGCALAVGVGVADHACIDRINILQATLRAMAEAVGQLAVPPDYLLI 124 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG S + KGDS S+SIA+ASI+AKVTRDR+M +++P YGF H GY Sbjct: 125 DGISTIPL-NLPQKTIKKGDSSSISIASASIVAKVTRDRMMMEYDQQFPGYGFAEHKGYG 183 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 A H I E GP IHR TFR ++ Sbjct: 184 CASHLAAIAELGPCPIHRKTFRGVK 208 >gi|302392411|ref|YP_003828231.1| Ribonuclease H [Acetohalobium arabaticum DSM 5501] gi|302204488|gb|ADL13166.1| Ribonuclease H [Acetohalobium arabaticum DSM 5501] Length = 315 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 112/198 (56%), Gaps = 2/198 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + + + G+DE GRG LAGPV A +IL + G+NDSK++S KREE + Sbjct: 65 QFEDDLANRGYQLIGGVDEAGRGPLAGPVAAAVVILPEDIWMPGLNDSKQLSEAKREEFF 124 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 K+ A I + ID+ NI A A+ A+ NL+ P L+DG ++ Sbjct: 125 AKLQEEAVDIGVGLVDSDRIDEVNIRNANYQAMREAISNLEQTPDYLLVDGE-EIPEIGI 183 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++ GD S+SIAAASIIAKVTRDR++ ++YP+Y F H GY TA H ++E Sbjct: 184 EQRRLVDGDQRSVSIAAASIIAKVTRDRMLVEYDQEYPEYNFVQHKGYGTADHIAALEEH 243 Query: 192 GPSCIHRLTFRPLRNLSV 209 GP IHR +F +R ++ Sbjct: 244 GPCPIHRYSFSKVREAAL 261 >gi|148265777|ref|YP_001232483.1| ribonuclease HII [Geobacter uraniireducens Rf4] gi|189043599|sp|A5G7Z2|RNH2_GEOUR RecName: Full=Ribonuclease HII; Short=RNase HII gi|146399277|gb|ABQ27910.1| RNase HII [Geobacter uraniireducens Rf4] Length = 216 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 85/199 (42%), Positives = 108/199 (54%), Gaps = 1/199 (0%) Query: 8 ERPHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 ERP E E++VR + +AGIDE GRG LAGPVV AA+IL G+NDSKK+S Sbjct: 11 ERPSLLEFESLVRRQGYACIAGIDEAGRGPLAGPVVAAAVILPNGVELPGVNDSKKLSPV 70 Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 KR EL++ I +SA +S + A ++ IP L+ Sbjct: 71 KRNELFDLIMASASAVGVGSSDAGLIDEINILQATLAAMKQAVSMLCIPPDYLLIDGISK 130 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L + KGDS+SLSIAAASIIAKV+RDRLM ++P YGF +H GY H Sbjct: 131 VPLSIPQKTIKKGDSLSLSIAAASIIAKVSRDRLMMDYETRFPGYGFAAHKGYGCVSHMA 190 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I E GP IHR TFR ++ Sbjct: 191 AIAELGPCAIHRKTFRGVK 209 >gi|71082816|ref|YP_265535.1| ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique HTCC1062] gi|97189139|sp|Q4FPF7|RNH2_PELUB RecName: Full=Ribonuclease HII; Short=RNase HII gi|71061929|gb|AAZ20932.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique HTCC1062] Length = 186 Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 118/186 (63%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M +AG+DEVGRG+L GPV AA+IL+ + + DSK ++ KREEL + I ++I + Sbjct: 1 MKILAGVDEVGRGSLIGPVYAAAVILNNSIDKKLLKDSKTLTKDKREELEKYIKKNSIWA 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I AS + I+K NI A+L A+ A+ L++ P LIDG +P+ + VIKGD Sbjct: 61 IGQASTKEIEKINILHASLLAMKRAILKLKIKPSLVLIDGNKLPDLKNYKLEYVIKGDQK 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASIIAKV+RD+ + K++ +YG+D++ GY T +H + IK+ G + HR TF Sbjct: 121 IPSISAASIIAKVSRDKFITKLSKEFNNYGWDTNSGYGTKEHLKAIKQFGITKYHRKTFS 180 Query: 203 PLRNLS 208 P+ +L Sbjct: 181 PISDLL 186 >gi|197336053|ref|YP_002156776.1| ribonuclease HII [Vibrio fischeri MJ11] gi|238690074|sp|B5F9W2|RNH2_VIBFM RecName: Full=Ribonuclease HII; Short=RNase HII gi|197317543|gb|ACH66990.1| ribonuclease HII [Vibrio fischeri MJ11] Length = 207 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 92/200 (46%), Positives = 116/200 (58%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KK Sbjct: 9 ELPPFEY-----PEGYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDKK 63 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L+ +I A S+ ID+ NI +AT+ A+ A+ L + P ALIDG +P Sbjct: 64 RELLFPEIQEKALAWSLGRCEAHEIDELNILQATMVAMQRAIAGLNITPDFALIDGNKVP 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E AV+KGD I+AASIIAKVTRDR M K YP YGF H GYPT H + Sbjct: 124 ELPMA-GLAVVKGDLRVQEISAASIIAKVTRDREMEELDKAYPQYGFAKHKGYPTKAHFE 182 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I+E G HR +F+P++ Sbjct: 183 AIEEHGVISEHRRSFKPVKR 202 >gi|59712555|ref|YP_205331.1| ribonuclease HII [Vibrio fischeri ES114] gi|73917836|sp|Q5E3F3|RNH2_VIBF1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|59480656|gb|AAW86443.1| ribonuclease HII [Vibrio fischeri ES114] Length = 207 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 92/200 (46%), Positives = 116/200 (58%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P FE + AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KK Sbjct: 9 ELPPFEY-----PEGYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDKK 63 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L+ +I A S+ ID+ NI +AT+ A+ A+ L + P ALIDG +P Sbjct: 64 RELLFPEIQEKALAWSLGRCEAHEIDELNILQATMVAMQRAIAGLNITPDFALIDGNKVP 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 E AV+KGD I+AASIIAKVTRDR M K YP YGF H GYPT H + Sbjct: 124 ELPMA-GLAVVKGDLRVQEISAASIIAKVTRDREMEELDKAYPQYGFAKHKGYPTKAHFE 182 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I+E G HR +F+P++ Sbjct: 183 AIEEHGVISEHRRSFKPVKR 202 >gi|147678043|ref|YP_001212258.1| ribonuclease HII [Pelotomaculum thermopropionicum SI] gi|189043637|sp|A5D1I3|RNH2_PELTS RecName: Full=Ribonuclease HII; Short=RNase HII gi|146274140|dbj|BAF59889.1| ribonuclease HII [Pelotomaculum thermopropionicum SI] Length = 266 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 74/197 (37%), Positives = 102/197 (51%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKRE 69 + E + + PVAG+DE GRG LAGPVV AA+IL P + G+NDSKK++ KR Sbjct: 61 YIYENSLIAQGYSPVAGVDEAGRGPLAGPVVAAAVILPPVADLALAGLNDSKKLNPSKRA 120 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 EL +I A+ + S + A I + L+ L Sbjct: 121 ELAARIKKVALAWSAGISTVEEIFNENIHAASLTAMRRAVLKLKIRPAYLLVDGYRISRL 180 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+ GD +S S+AAASI+AKV RDRLM H +YP YGF+ H GY T +H ++ Sbjct: 181 ELPQLALTGGDGLSASVAAASILAKVLRDRLMDFYHVQYPQYGFNRHKGYATPEHLAALE 240 Query: 190 EKGPSCIHRLTFRPLRN 206 GP +HR +RP++N Sbjct: 241 RYGPCPLHRAGYRPVKN 257 >gi|87118612|ref|ZP_01074511.1| ribonuclease HII [Marinomonas sp. MED121] gi|86166246|gb|EAQ67512.1| ribonuclease HII [Marinomonas sp. MED121] Length = 214 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG VV AA+ILDPNN + DSKK+S KKR L+++I A I+ Sbjct: 28 AGSDEAGRGPLAGDVVAAAVILDPNNPIASLADSKKLSEKKRVALFDEIKEKALAFCIAR 87 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS ID+ NI A++ A+ A+ L+V P ALIDG IP+DLPC A AV+KGD + Sbjct: 88 ASVAEIDELNILHASMLAMQRAISGLRVTPEHALIDGNRIPKDLPCPAEAVVKGDDRVEA 147 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD + ++YP YG + H GYPTA+H ++ G + IHR +F P++ Sbjct: 148 ISAASILAKVERDNEISALAERYPGYGLEKHKGYPTAQHLAALETLGVTPIHRQSFGPVK 207 Query: 206 NL 207 + Sbjct: 208 RI 209 >gi|118579525|ref|YP_900775.1| ribonuclease HII [Pelobacter propionicus DSM 2379] gi|189043636|sp|A1AMZ7|RNH2_PELPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|118502235|gb|ABK98717.1| RNase HII [Pelobacter propionicus DSM 2379] Length = 219 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 122/202 (60%), Gaps = 2/202 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 S P E ++ +AGIDE GRGAL GPVV AA+IL G++DSKK+S Sbjct: 11 SSPPIDLLFFEQQALKQGHRVIAGIDEAGRGALCGPVVAAAVILPTGMAIPGVDDSKKLS 70 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + RE+L+++I + A + I + Q ID+ NI +AT A+ AV+ L P LIDG Sbjct: 71 PRTREQLFDEIMARALSVGIGIGTPQLIDRINILQATRHAMAEAVDILAPRPDMLLIDGI 130 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 S D+P + KGDS SL+IAAASIIAKV+RDR++ +P YGF SH GY A Sbjct: 131 STI-DVPLPQKTITKGDSRSLTIAAASIIAKVSRDRMLTELDLLHPGYGFASHKGYGCAS 189 Query: 184 HQQVIKEKGPSCIHRLTFRPLR 205 H + I+ GPS +HRLTFR +R Sbjct: 190 HMEAIRRLGPSPVHRLTFRGVR 211 >gi|110677703|ref|YP_680710.1| ribonuclease HII [Roseobacter denitrificans OCh 114] gi|122973124|sp|Q16DB9|RNH2_ROSDO RecName: Full=Ribonuclease HII; Short=RNase HII gi|109453819|gb|ABG30024.1| ribonuclease HII [Roseobacter denitrificans OCh 114] Length = 198 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 83/187 (44%), Positives = 127/187 (67%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII 81 VAG+DEVGRG LAGPV AA++LDP NIP G+NDSK++S K+R L + + SSA I Sbjct: 4 GARRVAGVDEVGRGPLAGPVTAAAVVLDPANIPEGLNDSKQLSVKRRNLLGDALASSADI 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ AS + I++HNI +A+ A+ A+ L++ P LIDG +P+ L +A V+KGD+ Sbjct: 64 SVGHASVEEIEQHNILRASHMAMLRALAGLRLRPDFVLIDGAMVPQGLNLRAQPVVKGDT 123 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 LSI+AASIIAK+ RD++M +++P YG+++++GY + H ++ G + HR TF Sbjct: 124 RCLSISAASIIAKIARDKIMVDLAQQHPGYGWETNMGYGSKSHISALRNLGVTPHHRRTF 183 Query: 202 RPLRNLS 208 +P+ ++ Sbjct: 184 KPVHHML 190 >gi|225028010|ref|ZP_03717202.1| hypothetical protein EUBHAL_02279 [Eubacterium hallii DSM 3353] gi|224954724|gb|EEG35933.1| hypothetical protein EUBHAL_02279 [Eubacterium hallii DSM 3353] Length = 251 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 117/197 (59%), Gaps = 6/197 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + + GIDEVGRG LAGPVV A++L + INDSKK+S KKREEL+ Sbjct: 60 QYEKEYSQ--YDFICGIDEVGRGPLAGPVVAGAVVLPKGSRILYINDSKKLSAKKREELF 117 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ + I AS + ID+ NI +AT +A+ A+ NL V P L++ + + Sbjct: 118 DIIKEEAVSVGIGMASPERIDEINILQATYEAMRQAIANLSVKPE-LLLNDAVMIPGVDI 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SI AASI+AKV RD +M K +P Y F S+ GY + +H + + Sbjct: 177 KQVPIIKGDAKSISIGAASIMAKVYRDHMMEEYDKVFPGYDFASNKGYGSKEHIEALHRL 236 Query: 192 GPSCIHRLTFRPLRNLS 208 GP IHR +F L+N+ Sbjct: 237 GPCPIHRCSF--LKNIL 251 >gi|194467936|ref|ZP_03073922.1| Ribonuclease H [Lactobacillus reuteri 100-23] gi|194452789|gb|EDX41687.1| Ribonuclease H [Lactobacillus reuteri 100-23] Length = 256 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 81/194 (41%), Positives = 114/194 (58%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E EK VAG+DEVGRG LAGPVV A+IL+ + G+ DSK+++ +RE L Sbjct: 60 FKYEKYYWEKGCQYVAGMDEVGRGPLAGPVVTCAVILNADFDLIGVTDSKQLTRHERENL 119 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A +SI+ ID+ NI+ AT DA+ AV +L P ++D + D Sbjct: 120 YLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHLHHRPDHLIVDAVPLAID-- 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD S+S+AAASI+AK RD LMR YP YGF ++GY T +H +++ Sbjct: 178 IPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLVGLEK 237 Query: 191 KGPSCIHRLTFRPL 204 G + IHR +F P+ Sbjct: 238 MGATPIHRRSFNPV 251 >gi|296435545|gb|ADH17719.1| ribonuclease HII [Chlamydia trachomatis G/9768] gi|296437405|gb|ADH19566.1| ribonuclease HII [Chlamydia trachomatis G/11074] gi|297139904|gb|ADH96662.1| ribonuclease HII [Chlamydia trachomatis G/9301] Length = 217 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 115/194 (59%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAGIDE GRG LAGPVV A IL + GI+DSKK++ K+R LYE Sbjct: 17 FENQAIEQGYSQVAGIDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLTPKQRRYLYE 76 Query: 74 KI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +L+ P L+DG +P Sbjct: 77 LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLFLPH--KV 134 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 135 PSLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLR 205 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVK 208 >gi|237745609|ref|ZP_04576089.1| ribonuclease HII [Oxalobacter formigenes HOxBLS] gi|229376960|gb|EEO27051.1| ribonuclease HII [Oxalobacter formigenes HOxBLS] Length = 218 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 86/186 (46%), Positives = 118/186 (63%), Gaps = 1/186 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + G DE GRG +AGPV AA+ILDP+ G+ DSKK+S +R+EL +I A S Sbjct: 26 ELICGADEAGRGPIAGPVFAAAVILDPDRPVNGLRDSKKLSESRRDELALEIKKKAKAWS 85 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ S ID+ NI A++ A+ A+E L V+P AL+DG P DL +A A++KGD Sbjct: 86 IAQCSVAEIDELNILWASMLAMKRAIETLSVLPELALVDGNRYPRDLSVRAEAIVKGDDR 145 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AK RD +MR H++YP YGFD H GYPTA H +K+ G S +HR T+ Sbjct: 146 VPAISAASILAKTARDAVMRELHRQYPAYGFDRHKGYPTAFHLAQLKKYGVSPVHRRTYA 205 Query: 203 PLRNLS 208 P+R + Sbjct: 206 PVRKIL 211 >gi|260887868|ref|ZP_05899131.1| ribonuclease HII [Selenomonas sputigena ATCC 35185] gi|330838733|ref|YP_004413313.1| Ribonuclease H [Selenomonas sputigena ATCC 35185] gi|260862374|gb|EEX76874.1| ribonuclease HII [Selenomonas sputigena ATCC 35185] gi|329746497|gb|AEB99853.1| Ribonuclease H [Selenomonas sputigena ATCC 35185] Length = 255 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 127/198 (64%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + REK VAG+DE GRG LAGPVVVAA+IL +NDSKK+S RE+L Sbjct: 57 YHYEFLAREKGCTLVAGVDEAGRGPLAGPVVVAAVILPLGFFLPHLNDSKKLSAAMREKL 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + IT A+ + I S S + ID+ NI++AT + V +L+ P+ L+D + + Sbjct: 117 FSAITEGAVAVEIVSISEKIIDEKNIYQATKQGMCEVVASLRPQPQHVLLDAVPLKLPMT 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +F+++ GD+ S SIAAASI+AKVTRDRLM ++YP YGF H GY TA+H + +++ Sbjct: 177 --SFSIVHGDAKSASIAAASIMAKVTRDRLMLKYDEEYPQYGFKKHKGYGTAEHLEALQK 234 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP IHR +F P+R+++ Sbjct: 235 YGPCPIHRRSFEPIRSMA 252 >gi|226945927|ref|YP_002801000.1| ribonuclease HII [Azotobacter vinelandii DJ] gi|259494062|sp|C1DST2|RNH2_AZOVD RecName: Full=Ribonuclease HII; Short=RNase HII gi|226720854|gb|ACO80025.1| Ribonuclease HII [Azotobacter vinelandii DJ] Length = 207 Score = 187 bits (476), Expect = 6e-46, Method: Composition-based stats. Identities = 92/185 (49%), Positives = 113/185 (61%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S +RE L E+I A I Sbjct: 13 LVAGVDEVGRGPLCGAVVTAAVILDPERPILGLNDSKKLSEARREALSEEIREKALAWCI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ VIKGD+ Sbjct: 73 ARAEVEEIDRLNILHATMLAMRRAVEGLAVTPRLALIDGNRCPKLA-VPCAPVIKGDAQV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV RDR M + YP YG H GYPTA H + + GP+ IHR +F P Sbjct: 132 PAIAAASILAKVARDREMLVLDALYPGYGLARHKGYPTAVHLEALARLGPTPIHRRSFAP 191 Query: 204 LRNLS 208 +R L Sbjct: 192 VRELL 196 >gi|160880532|ref|YP_001559500.1| ribonuclease H [Clostridium phytofermentans ISDg] gi|189043586|sp|A9KLL7|RNH2_CLOPH RecName: Full=Ribonuclease HII; Short=RNase HII gi|160429198|gb|ABX42761.1| Ribonuclease H [Clostridium phytofermentans ISDg] Length = 254 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 93/198 (46%), Positives = 127/198 (64%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + + + GIDEVGRG LAGPV+ A+IL + INDSK++S KKRE L Sbjct: 58 FLQEYELSYPDYRYICGIDEVGRGPLAGPVIACAVILPKDCEILYINDSKQLSEKKREAL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I AI + I SASH I++ NI +AT +A+ A+ L V+P L D +IP+ + Sbjct: 118 YDEIMEKAISVGIGSASHARIEEINILQATYEAMRGAINKLGVVPELLLNDAVTIPK-VV 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S+SIAAASI+AKVTRDRLM +P YGF S+ GY +A H + +KE Sbjct: 177 IPQVPIIKGDAKSISIAAASIVAKVTRDRLMVEYDTVFPGYGFASNKGYGSADHIKALKE 236 Query: 191 KGPSCIHRLTFRPLRNLS 208 GPS IHR +F ++NL+ Sbjct: 237 LGPSPIHRASF--IKNLT 252 >gi|302670910|ref|YP_003830870.1| ribonuclease HII RnhB [Butyrivibrio proteoclasticus B316] gi|302395383|gb|ADL34288.1| ribonuclease HII RnhB [Butyrivibrio proteoclasticus B316] Length = 253 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 92/189 (48%), Positives = 124/189 (65%), Gaps = 3/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + GIDEVGRG LAGPV AA+IL ++ + +NDSKK+S KKREELY+ Sbjct: 62 YERE--NAGLGLLCGIDEVGRGPLAGPVYAAAVILPTDSEIYYLNDSKKLSEKKREELYD 119 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I AI + I ++ + ID+ NI +AT +A+ AV +L V P LID IP+ + Sbjct: 120 VIMDKAISVGIGYSTCERIDEINILQATYEAMTKAVNSLSVKPGGLLIDAVHIPQLEEYK 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S SIAAASIIAKVTRDR+M+ K+YP+YGFDS+ GY +A H +K+ G Sbjct: 180 QISIIKGDAKSASIAAASIIAKVTRDRIMKDYAKEYPEYGFDSNKGYGSADHIAALKKYG 239 Query: 193 PSCIHRLTF 201 P IHR +F Sbjct: 240 PCPIHRRSF 248 >gi|297617100|ref|YP_003702259.1| ribonuclease H [Syntrophothermus lipocalidus DSM 12680] gi|297144937|gb|ADI01694.1| Ribonuclease H [Syntrophothermus lipocalidus DSM 12680] Length = 222 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 122/196 (62%), Gaps = 2/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + K + VAG DEVGRG +AGPVV AA+IL P+ G+NDSK++ KKRE L Sbjct: 15 EYEYGLYAKGIRLVAGTDEVGRGPIAGPVVAAAVILPPDFEVPGVNDSKQVPPKKREWLS 74 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +KI +A ++ Y+D+ NI AT +A+ A+ L + P ++DG +L Sbjct: 75 DKIKENALTWAVGILFPPYLDRINILNATWEAMRLALGGLAIPPEHVIVDGW-PIPELGV 133 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGDS+S+S+A ASI+AKV RDR+M + YP YGF H GY T +H + ++ K Sbjct: 134 TQTPLVKGDSLSISVACASILAKVERDRIMTALDEVYPGYGFARHKGYATREHLRALEVK 193 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR++F P++++ Sbjct: 194 GPCPIHRISFEPIKSM 209 >gi|255067201|ref|ZP_05319056.1| ribonuclease HII [Neisseria sicca ATCC 29256] gi|255048569|gb|EET44033.1| ribonuclease HII [Neisseria sicca ATCC 29256] Length = 197 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 80/189 (42%), Positives = 109/189 (57%), Gaps = 1/189 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA- 79 KN + +AG+DE GRG L G V AA+IL P+ G+ DSKK+S KKR+ L I A Sbjct: 2 KNSFLIAGVDEAGRGPLVGSVFAAAVILPPSYHLPGLTDSKKLSEKKRDTLAVLIKEQAL 61 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A Q I + NI AT+ A+ AV L + P IDG +P+ L A AV+KG Sbjct: 62 AWCVAQADPQEIFELNILHATMLAMSRAVHGLAIKPDKVFIDGNRVPKALGVDAEAVVKG 121 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS + I+AAS++AK RD M ++YP YGFD H GY TA+H + ++ G HR Sbjct: 122 DSKIMEISAASVLAKTARDAEMYALAERYPQYGFDKHKGYGTAQHLEALQRYGVLPEHRR 181 Query: 200 TFRPLRNLS 208 F P++ L Sbjct: 182 DFAPVKALL 190 >gi|299140089|ref|ZP_07033258.1| Ribonuclease H [Acidobacterium sp. MP5ACTX8] gi|298597935|gb|EFI54104.1| Ribonuclease H [Acidobacterium sp. MP5ACTX8] Length = 257 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 81/208 (38%), Positives = 119/208 (57%), Gaps = 13/208 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GI 57 + C+ P E +R + +AG+DEVGRGAL GPVV AA+IL G+ Sbjct: 26 LICSDAP-------EQALRYQGFQSIAGVDEVGRGALFGPVVAAAVILPEKTGILARMGL 78 Query: 58 NDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK+++ + RE L KI + A ++I+ ID+ NI++A+ A+ AV+ L + P Sbjct: 79 KDSKQLTREDRERLDRKIRTMALAVAIAEVDAATIDRVNIYQASRMAMLMAVQQLGIAPD 138 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 +ID ++ D PC + GD++ LSIAAAS++AKV RD L+R YP YG SH Sbjct: 139 HLIID--AMRIDHPCPQTKLYYGDALCLSIAAASVVAKVYRDGLLREFDTVYPQYGLASH 196 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 GY T +H++ + GP +HR TF P+ Sbjct: 197 KGYGTPEHRRALVAHGPCELHRHTFAPV 224 >gi|86156706|ref|YP_463491.1| ribonuclease HII [Anaeromyxobacter dehalogenans 2CP-C] gi|97182177|sp|Q2IMM4|RNH2_ANADE RecName: Full=Ribonuclease HII; Short=RNase HII gi|85773217|gb|ABC80054.1| ribonuclease H [Anaeromyxobacter dehalogenans 2CP-C] Length = 283 Score = 187 bits (475), Expect = 7e-46, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 114/195 (58%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 EA + E+ + VAG+DE G LAGPVV A +L + P GI+DSK++ +RE L Sbjct: 66 LRYEAELWERGLVHVAGVDEAGMAPLAGPVVAGACVLPRDYRPRGIDDSKQLDRAERERL 125 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I +A +++ A + ID+ N++ A + A+ AV+ L P L+D R +P DLP Sbjct: 126 AEDIKRNAVCWAVARAEVEEIDRLNVYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLP 184 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++SL+IAAASI+AK RD LM +P YGF H GYPTA+H + Sbjct: 185 FPQTPIVHGDALSLTIAAASILAKTARDALMAELDLAHPGYGFARHKGYPTAEHFDALGR 244 Query: 191 KGPSCIHRLTFRPLR 205 G IHR +F P+R Sbjct: 245 LGACPIHRRSFAPVR 259 >gi|292492827|ref|YP_003528266.1| ribonuclease H [Nitrosococcus halophilus Nc4] gi|291581422|gb|ADE15879.1| Ribonuclease H [Nitrosococcus halophilus Nc4] Length = 200 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 80/193 (41%), Positives = 115/193 (59%), Gaps = 2/193 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 ++ + +AG+DEVGRG LAGPVV AA+ILDP + G+ DSK+++ RE L I Sbjct: 6 TLQREVQGWIAGVDEVGRGPLAGPVVAAAVILDPGHPIAGVKDSKQLTPLARERLAALIQ 65 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 + A+ ++ A + I++ NI A+L A+ AV L P L+DG C A Sbjct: 66 AQAVAWALGRAEVEEIEQLNIFWASLLAMERAVAALSEAPSLVLVDG-KHCPPAACPVRA 124 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGD ++IAAASI+AKV RD M K+YP YGF +H GYPT H +++ GP Sbjct: 125 VVKGDQKVMAIAAASIVAKVARDAEMVALEKRYPGYGFGTHKGYPTRAHLAALEKLGPCP 184 Query: 196 IHRLTFRPLRNLS 208 IHR +FR ++ ++ Sbjct: 185 IHRRSFRAVKEIA 197 >gi|253578396|ref|ZP_04855668.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850714|gb|EES78672.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 251 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 87/189 (46%), Positives = 118/189 (62%), Gaps = 4/189 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV A+IL ++ +NDSKK+S KREELY+ Sbjct: 61 YEHKYEHLGY--LCGIDEVGRGPLAGPVVACAVILPQDSRILYLNDSKKLSASKREELYD 118 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + I S + ID+ NI +AT +A+ AV L+V+P+ L D +IP+ Sbjct: 119 VIMREAVSVGIGMRSPERIDEINILQATYEAMREAVSKLEVVPQLLLNDAVTIPQIT-IP 177 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASI+AKVTRDR+M K +P+YGF S+ GY +A H +K+ G Sbjct: 178 QVPIIKGDAKSVSIAAASIVAKVTRDRMMEEYDKVFPEYGFASNKGYGSADHIAALKKYG 237 Query: 193 PSCIHRLTF 201 + IHR TF Sbjct: 238 ETPIHRKTF 246 >gi|146344062|ref|YP_001201918.1| putative ribonuclease HII [Pseudomonas fluorescens SBW25] gi|146187874|emb|CAM96203.1| putative ribonuclease HII [Pseudomonas fluorescens SBW25] Length = 208 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 91/198 (45%), Positives = 118/198 (59%), Gaps = 6/198 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E VAG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S KKR+ L Sbjct: 4 FSFEFA----GSEVVAGVDEVGRGPLCGDVVTAAVILDPSRPIQGLNDSKKLSEKKRDLL 59 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A SI AS + ID+ NI +AT+ A+ AV L V P LIDG P Sbjct: 60 YDEICEKALAWSIGRASVEEIDQLNILQATMLAMQRAVYGLNVTPTLVLIDGNRCPILPM 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +A A+IKGD + I+AAS++AKV RDR M+ A YP YG H GYP+ +H + + Sbjct: 120 -RAEAIIKGDGLIAEISAASVLAKVVRDREMQSADLLYPGYGLAGHKGYPSPEHLEALTR 178 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + IHR TF P+R + Sbjct: 179 LGVTPIHRKTFAPVRKIL 196 >gi|291524515|emb|CBK90102.1| Ribonuclease HII [Eubacterium rectale DSM 17629] Length = 253 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 118/194 (60%), Gaps = 6/194 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV A+IL + INDSKK++ KR+ELY+ Sbjct: 63 YEREYAS--YAHICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYD 120 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + I ASH+ ID+ NI +AT +A+ A+ L +P L D + + + Sbjct: 121 VIMEKAVSVGIGMASHERIDEINILQATYEAMRQAIGKLDPVPDLTLNDAVT-IPGVDIK 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SI AASI+AKVTRDR+M + YP YGF S+ GY +A+H + +KE G Sbjct: 180 QVPIIKGDAKSISIGAASIVAKVTRDRMMVEYDRIYPGYGFASNKGYGSAEHIKALKEIG 239 Query: 193 PSCIHRLTFRPLRN 206 PS IHR +F + N Sbjct: 240 PSPIHRASF--IHN 251 >gi|330444662|ref|YP_004377648.1| ribonuclease HII [Chlamydophila pecorum E58] gi|328807772|gb|AEB41945.1| ribonuclease HII [Chlamydophila pecorum E58] Length = 209 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 118/195 (60%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ VAG+DE GRG LAGPVV A IL N + GINDSK+++ K+R + Sbjct: 11 AFERELAQEGFTLVAGVDEAGRGPLAGPVVAGACILPKNKVFLGINDSKQLTPKQRGLIR 70 Query: 73 EKITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E + + + I S + ID+ NI +AT +A++ A+ +L ++P L+DG + Sbjct: 71 ETLLCDSEVISGIGVVSVERIDEINILEATKEAMHQAIASLSLVPDFLLVDGLHLSH--R 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SIAAASI+AK RD LMR H+KYP+YGFD H GY TA H + ++ Sbjct: 129 VPCKKIIKGDARSASIAAASILAKEHRDDLMRDLHQKYPEYGFDKHKGYGTAAHMEALRR 188 Query: 191 KGPSCIHRLTFRPLR 205 G S HR +F P++ Sbjct: 189 YGASPCHRRSFSPVK 203 >gi|312173373|emb|CBX81627.1| ribonuclease HII [Erwinia amylovora ATCC BAA-2158] Length = 207 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 114/187 (60%), Gaps = 2/187 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A S Sbjct: 10 RLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P + AV+KGDS+ Sbjct: 70 LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPALAM-PSRAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASI+AKVTRDR M ++YP YGF H GYPTA H + + + G + HR +F Sbjct: 129 VQEIGAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTAVHMEKLAQFGVTPQHRRSFA 188 Query: 203 PLRNLSV 209 P+RN + Sbjct: 189 PVRNALL 195 >gi|261379547|ref|ZP_05984120.1| ribonuclease HII [Neisseria subflava NJ9703] gi|284798018|gb|EFC53365.1| ribonuclease HII [Neisseria subflava NJ9703] Length = 208 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 108/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL + G+ DSKK+S KKR+ L + I A+ SI+ Sbjct: 18 AGVDEAGRGPLVGSVFAAAVILPEHFDLPGLTDSKKLSEKKRDMLAQMIKEQAVAWSIAF 77 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI AT+ A+ AVE L V P IDG +P+DL A AV+KGDS + Sbjct: 78 ADPDEILQLNILHATMAAMKRAVEGLSVTPDKVWIDGNRVPKDLNVPAEAVVKGDSKIIE 137 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M K+YP YGFD H GY TA+H +K+ G HR F P++ Sbjct: 138 ISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLPEHRRNFAPVK 197 Query: 206 NLS 208 L Sbjct: 198 TLL 200 >gi|169350423|ref|ZP_02867361.1| hypothetical protein CLOSPI_01191 [Clostridium spiroforme DSM 1552] gi|169292743|gb|EDS74876.1| hypothetical protein CLOSPI_01191 [Clostridium spiroforme DSM 1552] Length = 206 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 110/194 (56%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E + G+DE GRG +AG +VVA +I INDSK++S+KKREEL Sbjct: 4 YEYENKYYNLGYDYIIGLDEAGRGPMAGELVVAGVIFPKGYYDERINDSKQLSNKKREEL 63 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I +A I S + +DK N+++A+ A+ + NL AL D Sbjct: 64 YGLIVENALAYDIEIVSVEDVDKLNVYQASKQAMEKCISNLMRDKMFALSDA---MPLSY 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGD+ S+SI AASI+AKVTRD LM K YP+YGFD H GY T H++ +++ Sbjct: 121 FNHEAIIKGDAKSISIGAASILAKVTRDHLMEEYAKIYPEYGFDKHKGYVTKMHKEALEK 180 Query: 191 KGPSCIHRLTFRPL 204 GP IHR +F P+ Sbjct: 181 YGPCPIHRKSFAPV 194 >gi|116492734|ref|YP_804469.1| ribonuclease HII [Pediococcus pentosaceus ATCC 25745] gi|122265802|sp|Q03FJ5|RNH2_PEDPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|116102884|gb|ABJ68027.1| Ribonuclease HII [Pediococcus pentosaceus ATCC 25745] Length = 255 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 93/194 (47%), Positives = 121/194 (62%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F LE + + VAGIDEVGRG LAGPVV A+++LD +NDSK++S + REEL Sbjct: 58 FTLERELWSNGIDLVAGIDEVGRGCLAGPVVTASVVLDETFDLIDVNDSKQLSSELREEL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI + A+ + I S+Q ID+ NI AT A+ AV NL V P+ LID ++ + Sbjct: 118 YAKILTEAVSVGIGVCSNQKIDEVNILNATKLAMREAVGNLNVTPQHLLID--AVNAPIE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS S+SIAAASI+AKV RD LMR YP YGFD +VGY T +H + +K Sbjct: 176 IPKTVMFKGDSKSISIAAASIVAKVYRDHLMRSYAALYPGYGFDKNVGYGTKQHIEGLKT 235 Query: 191 KGPSCIHRLTFRPL 204 G + IHR TF P+ Sbjct: 236 YGVTPIHRQTFEPV 249 >gi|330807795|ref|YP_004352257.1| ribonuclease HII [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375903|gb|AEA67253.1| ribonuclease HII [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 214 Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY++I A Sbjct: 20 ELVAGVDEVGRGPLCGAVVTAAVILDPKRPILGLNDSKKLTEARREKLYDEICEKALSWC 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AV+ L + P+ A+IDG P+ +A AVI+GD Sbjct: 80 IARAEVEEIDELNILHATMLAMQRAVQGLHITPKLAMIDGNRCPKLSM-RAEAVIQGDGK 138 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 139 VPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 198 Query: 203 PLR 205 P+R Sbjct: 199 PVR 201 >gi|319638850|ref|ZP_07993608.1| ribonuclease HII [Neisseria mucosa C102] gi|317399754|gb|EFV80417.1| ribonuclease HII [Neisseria mucosa C102] Length = 230 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 109/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL + G+ DSKK+S KKR+ L + I A+ SI+ Sbjct: 40 AGVDEAGRGPLVGSVFAAAVILPEHFDLPGLTDSKKLSEKKRDMLAQMIKEQAVAWSIAF 99 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI AT+ A+ A+E L V+P IDG +P+DL A AV+KGDS + Sbjct: 100 ADPDEILQLNILHATMAAMKRAIEGLSVVPDKVWIDGNRVPKDLNVPAEAVVKGDSKIIE 159 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M K+YP YGFD H GY TA+H +K+ G HR F P++ Sbjct: 160 ISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLPEHRRDFAPVK 219 Query: 206 NLS 208 L Sbjct: 220 TLL 222 >gi|294791913|ref|ZP_06757061.1| ribonuclease HII [Veillonella sp. 6_1_27] gi|294457143|gb|EFG25505.1| ribonuclease HII [Veillonella sp. 6_1_27] Length = 279 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 129/197 (65%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 77 YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 136 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D DL Sbjct: 137 YDIIMDEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMK-LPDLR 195 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++P YGF H GY T H++ I++ Sbjct: 196 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 255 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 256 QGVTPLHRKSFEPIKSI 272 >gi|282850261|ref|ZP_06259640.1| ribonuclease HII [Veillonella parvula ATCC 17745] gi|282579754|gb|EFB85158.1| ribonuclease HII [Veillonella parvula ATCC 17745] Length = 265 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 129/197 (65%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D DL Sbjct: 123 YDIIMDEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMK-LPDLR 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++P YGF H GY T H++ I++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|86142121|ref|ZP_01060645.1| ribonuclease HII [Leeuwenhoekiella blandensis MED217] gi|85831684|gb|EAQ50140.1| ribonuclease HII [Leeuwenhoekiella blandensis MED217] Length = 200 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 106/185 (57%), Gaps = 1/185 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 +N+ GIDE GRG LAGPV AA+IL + + DSK ++HK RE L I Sbjct: 6 YSQNILTECGIDEAGRGCLAGPVTAAAVILPQSFKNKILTDSKLLTHKSRELLRPVIEQE 65 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A I+ + ID+ NI A++ A++ A+E L+ P+ L+DG C +I Sbjct: 66 ALAFGIAHVFPEEIDEINILNASIKAMHLAIEKLKQQPQHILVDGNRFKPYKECSHECII 125 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS LSIAAAS++AK RDR M H ++P Y + + GYPT +H+Q IKE G + H Sbjct: 126 KGDSKFLSIAAASVLAKTERDRYMTDLHMQFPHYNWKKNKGYPTKEHRQAIKEFGITSHH 185 Query: 198 RLTFR 202 R +F+ Sbjct: 186 RKSFK 190 >gi|323526474|ref|YP_004228627.1| Ribonuclease H [Burkholderia sp. CCGE1001] gi|323383476|gb|ADX55567.1| Ribonuclease H [Burkholderia sp. CCGE1001] Length = 253 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 119/184 (64%), Gaps = 3/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSA-II 81 V G+DE GRG LAGPVV AA+I DP+ + G++DSK ++ KKR+ELYEKI A Sbjct: 24 DVVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKALTAKKRDELYEKIVDRALAY 83 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I+SA+ + ID NI AT+ A+ AVE L V P +DG P ++ AVI GD+ Sbjct: 84 CIASATVEEIDSLNILHATMLAMKRAVEGLAVTPTLVKVDGNRCPMLS-IRSEAVIGGDA 142 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + SI+AASI+AKVTRDR++ H+ YP YGF++H GY T +H ++E GP HR +F Sbjct: 143 LVKSISAASILAKVTRDRMLLELHQTYPMYGFNAHAGYGTPQHLAALREHGPCEHHRRSF 202 Query: 202 RPLR 205 P+R Sbjct: 203 APVR 206 >gi|121634067|ref|YP_974312.1| ribonuclease HII [Neisseria meningitidis FAM18] gi|166226632|sp|A1KRM4|RNH2_NEIMF RecName: Full=Ribonuclease HII; Short=RNase HII gi|120865773|emb|CAM09502.1| ribonuclease HII [Neisseria meningitidis FAM18] Length = 194 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPEIFDLPGLTDSKKLSEKKRDALAEMIKNQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 AGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +++ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVR 185 Query: 206 NL 207 NL Sbjct: 186 NL 187 >gi|238923885|ref|YP_002937401.1| ribonuclease H [Eubacterium rectale ATCC 33656] gi|238875560|gb|ACR75267.1| ribonuclease H [Eubacterium rectale ATCC 33656] Length = 253 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 85/194 (43%), Positives = 116/194 (59%), Gaps = 6/194 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV A+IL + INDSKK++ KR+ELY+ Sbjct: 63 YEREYAS--YAHICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYD 120 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + I ASH+ ID+ NI +AT +A+ A+ L P L D + + + Sbjct: 121 VIMEKAVSVGIGMASHERIDEINILQATYEAMRQAIGKLDPAPDLTLNDAVT-IPGVDIK 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SI AASI+AKVTRDR+M YP YGF S+ GY +A+H + +K+ G Sbjct: 180 QVPIIKGDAKSISIGAASIVAKVTRDRMMVEYDNIYPGYGFASNKGYGSAEHIKALKKIG 239 Query: 193 PSCIHRLTFRPLRN 206 PS IHR +F + N Sbjct: 240 PSPIHRASF--IHN 251 >gi|46143677|ref|ZP_00134750.2| COG0164: Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207617|ref|YP_001052842.1| ribonuclease HII [Actinobacillus pleuropneumoniae L20] gi|303251953|ref|ZP_07338124.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|166225164|sp|A3MYK1|RNH2_ACTP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|126096409|gb|ABN73237.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302649383|gb|EFL79568.1| ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 197 Score = 187 bits (474), Expect = 9e-46, Method: Composition-based stats. Identities = 86/188 (45%), Positives = 115/188 (61%), Gaps = 2/188 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 N +AG+DEVGRG L G VV AA+IL PNN G+ DSKK+S KKR L E+I + A Sbjct: 9 NAHLIAGVDEVGRGPLVGAVVTAAVILAPNNPIEGLADSKKLSEKKRLLLAEEIKAKALC 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A + ID+ NI AT+ A+ AV L + P L+DG IP A AVIKGD Sbjct: 69 WSLGRAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPTLPM-PAQAVIKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR + Sbjct: 128 SLVAEISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKS 187 Query: 201 FRPLRNLS 208 F P++ + Sbjct: 188 FAPVKKIL 195 >gi|149192146|ref|ZP_01870367.1| ribonuclease HII [Vibrio shilonii AK1] gi|148834016|gb|EDL51032.1| ribonuclease HII [Vibrio shilonii AK1] Length = 208 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 89/200 (44%), Positives = 117/200 (58%), Gaps = 7/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E P F+ + VAG+DEVGRG L G +V AA+ILDPNN G+NDSKK+S KK Sbjct: 9 ELPPFDY-----PQGYSLVAGVDEVGRGPLVGDIVTAAVILDPNNPIEGLNDSKKLSEKK 63 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R LY +I A ++ S ID+ NI +AT+ A+ AV LQV P LIDG P Sbjct: 64 RLALYPEIKEKALAWAVGRCSPTEIDELNILQATMVAMQRAVAGLQVQPDMVLIDGNRTP 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 A AV+KGD I+AASIIAKV RD+ M +++P +GF H GYPT H + Sbjct: 124 TLPM-DAQAVVKGDLRVAEISAASIIAKVVRDQEMEELDQQHPQFGFAKHKGYPTKAHFE 182 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F+P++ Sbjct: 183 AIEQHGVIAEHRKSFKPVKR 202 >gi|56460771|ref|YP_156052.1| ribonuclease HII [Idiomarina loihiensis L2TR] gi|81363280|sp|Q5QZK7|RNH2_IDILO RecName: Full=Ribonuclease HII; Short=RNase HII gi|56179781|gb|AAV82503.1| Ribonuclease HII [Idiomarina loihiensis L2TR] Length = 187 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-I 83 + G DE GRG +AGPVV AA+ILDP+N G+NDSKK+S KKRE+L +I A+ I Sbjct: 1 MICGTDEAGRGPIAGPVVAAAVILDPDNPIEGLNDSKKLSEKKREKLSLEIKEKALYWAI 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + + I+ NI A++ A+ AVE L V P L+DG +P +L A A++ GD+ Sbjct: 61 AQSDPDEIEAINILWASMKAMQRAVEALPVKPDMVLVDGNRVP-ELKVPAKAIVGGDASE 119 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 IAAASI+AKV RDR M H+ YP Y FD H Y T KH +++++ GP IHR F P Sbjct: 120 QCIAAASILAKVERDRQMLKWHELYPQYEFDKHKAYGTPKHLELLEKHGPCPIHRKGFNP 179 Query: 204 LRNLS 208 ++ L Sbjct: 180 VKRLL 184 >gi|158424022|ref|YP_001525314.1| ribonuclease HII [Azorhizobium caulinodans ORS 571] gi|189043564|sp|A8I6E6|RNH2_AZOC5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|158330911|dbj|BAF88396.1| ribonuclease H [Azorhizobium caulinodans ORS 571] Length = 259 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F+ E V + M PVAG DE GRG LAGPVV AA+ILDP IP G++DSKK++ +RE Sbjct: 42 SFKRERAVLKSGMAPVAGADEAGRGPLAGPVVAAAVILDPKRIPAGLDDSKKLTATRREA 101 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L+++I ++A +S+ A ID+ NI +ATL A+ +AV+ L PR +DG P Sbjct: 102 LFDEICATAEVSVVMAPPSRIDRDNIRQATLWALANAVKGLPEDPRLVFVDGNDRPPL-E 160 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C+ VI GD + SIAAASI+AKVTRDRLM +P YGF+ H+GY TA+H ++ Sbjct: 161 CEVEMVIGGDGLIASIAAASIVAKVTRDRLMVGLGAAFPGYGFERHMGYGTAEHGAALRR 220 Query: 191 KGPSCIHRLTFRPLR 205 GP HR +F P+R Sbjct: 221 LGPCRHHRTSFAPVR 235 >gi|292489213|ref|YP_003532100.1| ribonuclease HII [Erwinia amylovora CFBP1430] gi|292898553|ref|YP_003537922.1| ribonuclease HII [Erwinia amylovora ATCC 49946] gi|291198401|emb|CBJ45508.1| ribonuclease HII [Erwinia amylovora ATCC 49946] gi|291554647|emb|CBA22333.1| Ribonuclease HII [Erwinia amylovora CFBP1430] Length = 211 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 114/187 (60%), Gaps = 2/187 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A S Sbjct: 10 RLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P + AV+KGDS+ Sbjct: 70 LGRAEPEEIDRLNILHATMLAMQRAVAGLHLTPDFVLIDGNRCPALAM-PSRAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASI+AKVTRDR M ++YP YGF H GYPTA H + + + G + HR +F Sbjct: 129 VQEIGAASIMAKVTRDREMCELDQQYPQYGFARHKGYPTALHMEKLAQFGVTPQHRRSFA 188 Query: 203 PLRNLSV 209 P+RN + Sbjct: 189 PVRNALL 195 >gi|237808842|ref|YP_002893282.1| Ribonuclease H [Tolumonas auensis DSM 9187] gi|237501103|gb|ACQ93696.1| Ribonuclease H [Tolumonas auensis DSM 9187] Length = 197 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DEVGRG L G VV AA+ILDP G+NDSKK+S KKRE L++ I + Sbjct: 9 YQLIAGVDEVGRGPLIGDVVTAAVILDPARPITGLNDSKKLSEKKREALFDIIRENVLAF 68 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +I S ID+ NI +AT+ A+ AV L V P LIDG P + AV+KGDS Sbjct: 69 AIGRCSAAEIDQFNILQATMKAMQRAVAGLSVQPEFVLIDGNRCPALSM-PSQAVVKGDS 127 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + I+AASI+AKVTRDR M + YP YGF H GYPTA+H + E G IHR +F Sbjct: 128 LVAEISAASILAKVTRDREMAELDQLYPQYGFAQHKGYPTAQHLAALAEHGALAIHRRSF 187 Query: 202 RPLR 205 +P++ Sbjct: 188 KPVK 191 >gi|237802463|ref|YP_002887657.1| ribonuclease HII [Chlamydia trachomatis B/Jali20/OT] gi|231273697|emb|CAX10475.1| ribonuclease HII [Chlamydia trachomatis B/Jali20/OT] Length = 217 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 114/194 (58%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E+ VAG+DE GRG LAGPVV A IL + GI+DSKK+ K+R LYE Sbjct: 17 FENQAIEQGYSRVAGVDEAGRGPLAGPVVAGACILPRGKVFLGIDDSKKLIPKQRRYLYE 76 Query: 74 KI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ +LQ P L+DG +P Sbjct: 77 LLLEDPEVDCGVGVVSVERIDEINILEATKEAMVQAIASLQSTPDFLLVDGLFLPH--KV 134 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAK RD LMR H +YP+YGFD H GY TA H Q +K Sbjct: 135 PSLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHF 194 Query: 192 GPSCIHRLTFRPLR 205 GP HR +F P++ Sbjct: 195 GPCVYHRKSFSPVK 208 >gi|254455368|ref|ZP_05068797.1| ribonuclease HII [Candidatus Pelagibacter sp. HTCC7211] gi|207082370|gb|EDZ59796.1| ribonuclease HII [Candidatus Pelagibacter sp. HTCC7211] Length = 190 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 109/184 (59%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M +AG+DEVGRG+L GPV AA+IL+ N + DSK IS KRE L I ++I Sbjct: 1 MKIIAGVDEVGRGSLIGPVYAAAVILNKNIDKKLLKDSKTISKIKRELLSNYIKKNSIWV 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I AS + IDK NI +A+L A+ A++ L+ P LIDG +P+ A+IKGD Sbjct: 61 IGKASVKEIDKINILQASLLAMKRAIKKLKKKPTQILIDGNKVPDIKNYNLKAIIKGDKK 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASIIAKV RD+ + K Y +D + GY T +H + IK+ G S HR TF Sbjct: 121 IPSISAASIIAKVARDKFITSLAKTNKGYHWDQNFGYGTKQHLKAIKKLGISKHHRKTFS 180 Query: 203 PLRN 206 P+ N Sbjct: 181 PINN 184 >gi|332519701|ref|ZP_08396165.1| Ribonuclease H [Lacinutrix algicola 5H-3-7-4] gi|332044260|gb|EGI80454.1| Ribonuclease H [Lacinutrix algicola 5H-3-7-4] Length = 199 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 71/193 (36%), Positives = 100/193 (51%), Gaps = 12/193 (6%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 FE E G DE GRG LAGPV AA+IL +NDSKK+S KRE Sbjct: 8 SFEFE-----------CGTDEAGRGCLAGPVTAAAVILPKKFKNNILNDSKKLSKGKREL 56 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I + A + + ID+ NI A++ A+ ++ L P ++DG Sbjct: 57 LKPIIENEAICYAFTHVYENEIDEINILNASILAMQRSILELNPKPEFIIVDGNRFKPLN 116 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGDS LSIAAAS++AK RD M H+++P Y + + GYPT +H++ I+ Sbjct: 117 NIPFETIIKGDSKYLSIAAASVLAKTYRDAYMLKIHEEFPMYNWKKNKGYPTKEHREAIR 176 Query: 190 EKGPSCIHRLTFR 202 + G + HR +FR Sbjct: 177 KYGITKYHRKSFR 189 >gi|229524248|ref|ZP_04413653.1| ribonuclease HII [Vibrio cholerae bv. albensis VL426] gi|229337829|gb|EEO02846.1| ribonuclease HII [Vibrio cholerae bv. albensis VL426] Length = 206 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 120/202 (59%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A S+ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPKLPM-EAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|58584899|ref|YP_198472.1| ribonuclease HII [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|73917838|sp|Q5GRZ4|RNH2_WOLTR RecName: Full=Ribonuclease HII; Short=RNase HII gi|58419215|gb|AAW71230.1| Ribonuclease HII [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 203 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 120/196 (61%), Gaps = 6/196 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68 P F LE + +AG+DEVGRG LAGPV+ AA++ + N I GINDSKK++ K R Sbjct: 4 PDFTLENKLS----GVIAGVDEVGRGPLAGPVMSAAVVFTNRNIIIEGINDSKKLTAKNR 59 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LYEKI S A I AS I+ +NI +AT ++ A+ NL + L+DG P Sbjct: 60 QVLYEKIISVAKFGIGMASVAEINSYNILQATKLSMERALVNLGIELDYVLVDGN-QPPK 118 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + Q +++KGDS+S+S+AAASI+AKV RD+LM+ H +YP+Y + + GY T H I Sbjct: 119 VKWQVKSIVKGDSLSVSVAAASIVAKVARDQLMQELHNQYPEYNWYKNKGYGTKGHIDAI 178 Query: 189 KEKGPSCIHRLTFRPL 204 G + HR +F P+ Sbjct: 179 NLYGVTEHHRKSFAPI 194 >gi|90022228|ref|YP_528055.1| ribonuclease HII [Saccharophagus degradans 2-40] gi|123090288|sp|Q21HI6|RNH2_SACD2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|89951828|gb|ABD81843.1| Ribonuclease H [Saccharophagus degradans 2-40] Length = 199 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG LAG VV AA+IL ++ G+ DSKKI+ KKR+ L++ I A+ Sbjct: 9 QFVAGVDEVGRGPLAGDVVAAAVILGEDHGIEGLADSKKITEKKRDALFDVIQERAVSFC 68 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID+ NI A+L A+ AVE L + P+ +DG +P+ A AV+KGDS+ Sbjct: 69 IARASVEEIDELNILHASLLAMKRAVEGLNIQPQYIYVDGNKLPK-WTYSAEAVVKGDSL 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +KYP YG H GYPT H +K GP+ IHR +F Sbjct: 128 VEEISAASILAKVTRDREMVALDEKYPGYGLAGHKGYPTKVHMDALKRLGPTIIHRKSFA 187 Query: 203 PLR 205 P+R Sbjct: 188 PVR 190 >gi|118594900|ref|ZP_01552247.1| ribonuclease HII [Methylophilales bacterium HTCC2181] gi|118440678|gb|EAV47305.1| ribonuclease HII [Methylophilales bacterium HTCC2181] Length = 188 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 83/186 (44%), Positives = 117/186 (62%), Gaps = 1/186 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG LAGPV AA+ILDP+ G+ DSKK+S K+ +Y I A +S Sbjct: 3 MICGVDEAGRGPLAGPVFAAAVILDPSRPIPGLKDSKKLSPKQLLSVYLDIMKCAWEVSS 62 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++A+ Q ID+ NI +A+L A+ A+ L IP LIDG+ P+ + AV+KGD+ Sbjct: 63 ATATPQEIDQINILQASLLAMKRAIYQLSNIPDRILIDGQHCPDIQSMEMKAVVKGDAKH 122 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKV RD+ M ++P+Y F H GYPT +H ++I+E G S +HR TFRP Sbjct: 123 QEISAASIIAKVERDKYMLELDHQFPEYNFKQHKGYPTKEHIRLIREFGVSPVHRKTFRP 182 Query: 204 LRNLSV 209 + L + Sbjct: 183 VSELLI 188 >gi|70728572|ref|YP_258321.1| ribonuclease HII [Pseudomonas fluorescens Pf-5] gi|97189183|sp|Q4KHG2|RNH2_PSEF5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|68342871|gb|AAY90477.1| ribonuclease HII [Pseudomonas fluorescens Pf-5] Length = 217 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 88/191 (46%), Positives = 116/191 (60%), Gaps = 2/191 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+L+++I Sbjct: 15 TLVADAEDLVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLFDEIC 74 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A I+ A + ID+ NI AT+ A+ AVE L V P+ A+IDG P+ A A Sbjct: 75 EKALSWCIARAEVEEIDELNILHATMLAMQRAVEGLSVTPKLAMIDGNRCPKLAM-PAEA 133 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ Sbjct: 134 VVKGDSKVPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTP 193 Query: 196 IHRLTFRPLRN 206 IHR +F P+R Sbjct: 194 IHRRSFAPVRQ 204 >gi|153213786|ref|ZP_01948994.1| ribonuclease HII [Vibrio cholerae 1587] gi|124115710|gb|EAY34530.1| ribonuclease HII [Vibrio cholerae 1587] Length = 206 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 120/202 (59%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPKLPM-EAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|121586247|ref|ZP_01676037.1| ribonuclease HII [Vibrio cholerae 2740-80] gi|121549513|gb|EAX59539.1| ribonuclease HII [Vibrio cholerae 2740-80] Length = 206 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 120/202 (59%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A ++ S Q ID+ NI +AT+ A+ A+ L+V P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAIAGLRVQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPKLPM-EAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|196228537|ref|ZP_03127404.1| Ribonuclease H [Chthoniobacter flavus Ellin428] gi|196227940|gb|EDY22443.1| Ribonuclease H [Chthoniobacter flavus Ellin428] Length = 202 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 82/196 (41%), Positives = 114/196 (58%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +R VAGIDEVGRG LAGPVV AA+IL +NDSKK+S ++RE++Y Sbjct: 2 RHERKLRADGCVLVAGIDEVGRGPLAGPVVAAAVILPEKFRHKTLNDSKKLSAEQREKIY 61 Query: 73 EKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + ++ + ID+ NI +A+ +A+ +V L P ALIDG P Sbjct: 62 AELTTRENVHWTVCVVEVEEIDRINILRASHEAMRRSVTALATKPDHALIDGL-PVRPFP 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A++ GD++S SIAAAS+IAKVTRDR+M +++P Y F H GY T H +KE Sbjct: 121 IPHTALVGGDALSFSIAAASVIAKVTRDRIMVEMDQRHPGYAFGQHKGYGTELHLARLKE 180 Query: 191 KGPSCIHRLTFRPLRN 206 GP IHR +F P+ Sbjct: 181 HGPCPIHRRSFLPVEQ 196 >gi|303241143|ref|ZP_07327651.1| Ribonuclease H [Acetivibrio cellulolyticus CD2] gi|302591270|gb|EFL61010.1| Ribonuclease H [Acetivibrio cellulolyticus CD2] Length = 260 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 92/190 (48%), Positives = 112/190 (58%), Gaps = 2/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +AGIDE GRG LAGPVV AA+IL N G+NDSKK+S K+REELY Sbjct: 66 RFEKEAYVMGAKFIAGIDEAGRGPLAGPVVAAAVILPENVFINGLNDSKKLSEKQREELY 125 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 IT AI + + ID+ NI AT A+ AVE L+V P LID + Sbjct: 126 SIITEKAIAYDVGIVDEKVIDELNILNATKMAMEIAVEGLKVKPDILLIDAVKLDSLK-I 184 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++IKGD++S+SIAAASIIAKVTRDR + YPDYGF H GY T +H IK+ Sbjct: 185 KQESIIKGDALSISIAAASIIAKVTRDRYIDQMDSVYPDYGFRKHKGYGTKEHIDAIKKF 244 Query: 192 GPSCIHRLTF 201 G IHR TF Sbjct: 245 GICPIHRTTF 254 >gi|15642244|ref|NP_231877.1| ribonuclease HII [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147673627|ref|YP_001217761.1| ribonuclease HII [Vibrio cholerae O395] gi|153817064|ref|ZP_01969731.1| ribonuclease HII [Vibrio cholerae NCTC 8457] gi|153820817|ref|ZP_01973484.1| ribonuclease HII [Vibrio cholerae B33] gi|227082370|ref|YP_002810921.1| ribonuclease HII [Vibrio cholerae M66-2] gi|229507680|ref|ZP_04397185.1| ribonuclease HII [Vibrio cholerae BX 330286] gi|229512125|ref|ZP_04401604.1| ribonuclease HII [Vibrio cholerae B33] gi|229519260|ref|ZP_04408703.1| ribonuclease HII [Vibrio cholerae RC9] gi|229607184|ref|YP_002877832.1| ribonuclease HII [Vibrio cholerae MJ-1236] gi|254849376|ref|ZP_05238726.1| ribonuclease HII [Vibrio cholerae MO10] gi|255747057|ref|ZP_05421002.1| ribonuclease HII [Vibrio cholera CIRS 101] gi|262161398|ref|ZP_06030508.1| ribonuclease HII [Vibrio cholerae INDRE 91/1] gi|298500379|ref|ZP_07010184.1| ribonuclease HII [Vibrio cholerae MAK 757] gi|12644303|sp|P52021|RNH2_VIBCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|172047613|sp|A5F626|RNH2_VIBC3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254808006|sp|C3LQ18|RNH2_VIBCM RecName: Full=Ribonuclease HII; Short=RNase HII gi|9656806|gb|AAF95390.1| ribonuclease HII [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126512332|gb|EAZ74926.1| ribonuclease HII [Vibrio cholerae NCTC 8457] gi|126521609|gb|EAZ78832.1| ribonuclease HII [Vibrio cholerae B33] gi|146315510|gb|ABQ20049.1| ribonuclease HII [Vibrio cholerae O395] gi|227010258|gb|ACP06470.1| ribonuclease HII [Vibrio cholerae M66-2] gi|227014142|gb|ACP10352.1| ribonuclease HII [Vibrio cholerae O395] gi|229343949|gb|EEO08924.1| ribonuclease HII [Vibrio cholerae RC9] gi|229352090|gb|EEO17031.1| ribonuclease HII [Vibrio cholerae B33] gi|229355185|gb|EEO20106.1| ribonuclease HII [Vibrio cholerae BX 330286] gi|229369839|gb|ACQ60262.1| ribonuclease HII [Vibrio cholerae MJ-1236] gi|254845081|gb|EET23495.1| ribonuclease HII [Vibrio cholerae MO10] gi|255735459|gb|EET90859.1| ribonuclease HII [Vibrio cholera CIRS 101] gi|262028709|gb|EEY47363.1| ribonuclease HII [Vibrio cholerae INDRE 91/1] gi|297541072|gb|EFH77126.1| ribonuclease HII [Vibrio cholerae MAK 757] Length = 206 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 120/202 (59%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPKLPM-EAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|227524479|ref|ZP_03954528.1| ribonuclease HII [Lactobacillus hilgardii ATCC 8290] gi|227088349|gb|EEI23661.1| ribonuclease HII [Lactobacillus hilgardii ATCC 8290] Length = 255 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 76/196 (38%), Positives = 114/196 (58%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E + + VAG+DEVGRG LAGPVV A IL + +NDSK+++ + R L Sbjct: 60 FKYERSFWHRGVNYVAGVDEVGRGPLAGPVVACATILPRDFDLIQVNDSKQLTPEIRARL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I AI I + ++ ID+ NI++AT A+ AV + + I ++ +P Sbjct: 120 APQIKREAISIGLGLVDNKGIDRLNIYEATRVAMKQAVN--NLTQQPDEIIVDAMQIPVP 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S+S++AASI+AKV RD LM ++YP+Y F + GY T KH +K+ Sbjct: 178 IHQTRLIKGDAKSISVSAASIVAKVYRDNLMDQYAQQYPEYDFRHNAGYGTTKHLSALKK 237 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR TF P++N Sbjct: 238 YGATPIHRKTFAPIKN 253 >gi|15964592|ref|NP_384945.1| ribonuclease HII [Sinorhizobium meliloti 1021] gi|307309338|ref|ZP_07589001.1| Ribonuclease H [Sinorhizobium meliloti BL225C] gi|307320074|ref|ZP_07599495.1| Ribonuclease H [Sinorhizobium meliloti AK83] gi|39932445|sp|Q92RM4|RNH2_RHIME RecName: Full=Ribonuclease HII; Short=RNase HII gi|15073770|emb|CAC45411.1| Probable ribonuclease HII protein [Sinorhizobium meliloti 1021] gi|306894289|gb|EFN25054.1| Ribonuclease H [Sinorhizobium meliloti AK83] gi|306900207|gb|EFN30825.1| Ribonuclease H [Sinorhizobium meliloti BL225C] Length = 216 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 104/206 (50%), Positives = 138/206 (66%), Gaps = 1/206 (0%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +F P P F E WPVAG DE GRG LAGPVV AA+ILDP+ IP G+NDS Sbjct: 11 LFPLQAPV-PDFTFERAAHRDGFWPVAGADEAGRGPLAGPVVAAAVILDPDAIPAGLNDS 69 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K ++ ++RE L+E+I +++ +SI+S+S ID +I KA+LDA+ AV L++ R L+ Sbjct: 70 KLLTAEQREALFEEILATSTVSIASSSSARIDTTDILKASLDAMRRAVHGLELAARIVLV 129 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGR +P L C A A++KGDS S+SIAAASI+AKVTRDR+M A +P YGF H GY Sbjct: 130 DGRDVPPGLSCHAKAIVKGDSRSVSIAAASIVAKVTRDRMMARADATFPLYGFAHHAGYA 189 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 T KH+ I+ GP +HR++FRP R Sbjct: 190 TVKHRTAIESHGPCSLHRMSFRPFRQ 215 >gi|304404228|ref|ZP_07385890.1| Ribonuclease H [Paenibacillus curdlanolyticus YK9] gi|304347206|gb|EFM13038.1| Ribonuclease H [Paenibacillus curdlanolyticus YK9] Length = 206 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 89/192 (46%), Positives = 114/192 (59%), Gaps = 4/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E ++ E+ +AGIDEVGRG L G VV AA+IL P + G+NDSKK+S KKR EL Sbjct: 2 LEYEKLLWEQGCSNIAGIDEVGRGCLFGDVVAAAVILPPGLVLDGVNDSKKLSEKKRNEL 61 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A SI+ ID+ NI +A+ A+ AV+ L V P L+D DL Sbjct: 62 YDIIIEHALYWSIARIDSDEIDRINIKQASRLAMKQAVQTLGVDPDHLLVDAEK--IDLD 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLM-RIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD+ S SIAAASI+AKVTRDRL YP YG H GY T H++ + Sbjct: 120 LPQQAIIKGDATSQSIAAASILAKVTRDRLCTTEWESLYPGYGIAIHKGYATKLHREKLL 179 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR +F Sbjct: 180 ELGPTPLHRKSF 191 >gi|262404580|ref|ZP_06081135.1| ribonuclease HII [Vibrio sp. RC586] gi|262349612|gb|EEY98750.1| ribonuclease HII [Vibrio sp. RC586] Length = 206 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 119/202 (58%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL A +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPAFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A S+ S Q ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P+ +A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 121 VPKLPM-EAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAVH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|84515024|ref|ZP_01002387.1| ribonuclease HII [Loktanella vestfoldensis SKA53] gi|84511183|gb|EAQ07637.1| ribonuclease HII [Loktanella vestfoldensis SKA53] Length = 210 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 126/199 (63%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + +AG+DEVGRG LAGPVV AA++LDP +P G+NDSKK++ +RE Sbjct: 4 PDFSFEDTAHGRGHLRIAGVDEVGRGPLAGPVVAAAVVLDPARLPAGLNDSKKLTLDRRE 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ +I SA +SI+ AS ID HNI +A+ A+ A+ L P LIDG +P L Sbjct: 64 ALFSQIMDSADVSIAQASVAEIDSHNILRASHLAMLRAIAGLATPPDHVLIDGNMVPRGL 123 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++KGD+ SLSIAAASI+AKV RDR M +++P YG++++ GYPT H+ + Sbjct: 124 TLSSETIVKGDARSLSIAAASIVAKVWRDRHMVDLAQQFPGYGWEANAGYPTPAHKLALV 183 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + HR +F+P+ N+ Sbjct: 184 TLGVTPHHRRSFKPVHNIL 202 >gi|218509940|ref|ZP_03507818.1| ribonuclease HII [Rhizobium etli Brasil 5] Length = 221 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 100/183 (54%), Positives = 134/183 (73%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 PVAG DE GRG LAGPVV AA+ILDP IP G+NDSK++S ++REEL+ +I ++A +SI Sbjct: 26 GPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREELFVQILATATVSI 85 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +S+S ID+ +I KA+LDA+ A+ +L V L DG +P L C AV+KGD+ S Sbjct: 86 ASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLTDGLDVPPGLACPGQAVVKGDARS 145 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +SIAAASI+AKVTRDR+M AH +PDYGF +H GY TA+H+ I++ GP +HR++FRP Sbjct: 146 VSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYGTAQHRAGIEKHGPCSLHRMSFRP 205 Query: 204 LRN 206 LR Sbjct: 206 LRK 208 >gi|260893261|ref|YP_003239358.1| Ribonuclease H [Ammonifex degensii KC4] gi|260865402|gb|ACX52508.1| Ribonuclease H [Ammonifex degensii KC4] Length = 204 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 112/194 (57%), Gaps = 2/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E+ VAG+DE GRG LAGPVV AA+I P+ + DSK +S KKR EL Sbjct: 3 RWEEKFWEQGFRRVAGVDEAGRGPLAGPVVAAAVIFPPSLDLPLLKDSKLLSPKKRWELA 62 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A +I S ID I +AT A+Y A+ +L++ P LIDG S P Sbjct: 63 CRIVELAEDWAIGIGSVAEIDLLGIREATFRAMYRALCSLRLPPDMVLIDGNSSPPLPW- 121 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGDS S+AAASI+AKVTRDRLM H +P Y F H GYPT +H++++ Sbjct: 122 PHLTIVKGDSRVASVAAASILAKVTRDRLMEDLHPLFPQYNFKRHKGYPTKEHKELLARY 181 Query: 192 GPSCIHRLTFRPLR 205 GP +HR TF P+R Sbjct: 182 GPVSLHRRTFAPVR 195 >gi|209695837|ref|YP_002263767.1| ribonuclease HII [Aliivibrio salmonicida LFI1238] gi|238056773|sp|B6EJW6|RNH2_ALISL RecName: Full=Ribonuclease HII; Short=RNase HII gi|208009790|emb|CAQ80097.1| ribonuclease HII [Aliivibrio salmonicida LFI1238] Length = 207 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 90/203 (44%), Positives = 118/203 (58%), Gaps = 7/203 (3%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 E P FE + AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ Sbjct: 6 DSKELPPFEY-----PQGYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLT 60 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KKR+ L+ +I A S+ ID+ NI +AT+ A+ A+ L+V P ALIDG Sbjct: 61 EKKRDLLFPEIQEKALAWSLGRCEAHEIDELNILQATMVAMQRAIAGLKVTPDFALIDGN 120 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +PE AV+KGD I+AASI+AKVTRDR M + K++P YGF H GYPT Sbjct: 121 KVPELPMA-GLAVVKGDLRVQEISAASILAKVTRDREMEVLDKEFPQYGFAKHKGYPTKA 179 Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206 H I+E G HR +F+P++ Sbjct: 180 HFAAIEEHGVISEHRRSFKPVKR 202 >gi|322507786|gb|ADX03240.1| rnhB [Acinetobacter baumannii 1656-2] Length = 188 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 116/183 (63%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A SI Sbjct: 2 FVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+H ID+ NI +AT A+ AVE L+ P+ ++DG IP+ + A++ GD+ Sbjct: 62 AEATHAEIDELNILQATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDASH 121 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++YP +GF H GYPT H + I G HR ++ P Sbjct: 122 AEISAASILAKVTRDRQMAELDQQYPLFGFAKHQGYPTKAHFEAIAAHGVIDQHRRSYAP 181 Query: 204 LRN 206 ++ Sbjct: 182 VKR 184 >gi|261211364|ref|ZP_05925652.1| ribonuclease HII [Vibrio sp. RC341] gi|260839319|gb|EEX65945.1| ribonuclease HII [Vibrio sp. RC341] Length = 206 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 89/202 (44%), Positives = 118/202 (58%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIEGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A ++ S Q ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P+ +A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 121 VPQLPM-EAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAVH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|197286117|ref|YP_002151989.1| ribonuclease HII [Proteus mirabilis HI4320] gi|227357236|ref|ZP_03841593.1| ribonuclease HII [Proteus mirabilis ATCC 29906] gi|238690094|sp|B4F256|RNH2_PROMH RecName: Full=Ribonuclease HII; Short=RNase HII gi|194683604|emb|CAR44495.1| ribonuclease HII [Proteus mirabilis HI4320] gi|227162499|gb|EEI47488.1| ribonuclease HII [Proteus mirabilis ATCC 29906] Length = 196 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 89/187 (47%), Positives = 114/187 (60%), Gaps = 3/187 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK++ KKR LY++I A +I Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPANPIQGLMDSKKLTEKKRNALYDEIKEKALCWAI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + IDK NI AT+ A+ AV L + P L+DG P AVIKGDS+ Sbjct: 70 GRAEPEEIDKLNILWATMKAMERAVAGLSITPDMVLVDGNRCPNLPMASQ-AVIKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M K YPDYGF H GYPTA H + + G + HR +F P Sbjct: 129 QEISAASILAKVTRDREMEQLDKLYPDYGFAKHKGYPTAFHMEKLASLGATPYHRKSFAP 188 Query: 204 LRN-LSV 209 ++ L++ Sbjct: 189 VKRALNL 195 >gi|33152162|ref|NP_873515.1| ribonuclease HII [Haemophilus ducreyi 35000HP] gi|39932311|sp|Q7VMF2|RNH2_HAEDU RecName: Full=Ribonuclease HII; Short=RNase HII gi|33148384|gb|AAP95904.1| ribonuclease HII [Haemophilus ducreyi 35000HP] Length = 197 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 82/188 (43%), Positives = 113/188 (60%), Gaps = 2/188 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 N +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S KKR L +I A Sbjct: 9 NANLIAGVDEVGRGPLVGAVVTAAVILDPQQPILGLADSKKLSEKKRILLATEIKQKALC 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A + ID+ NI AT+ A+ A+ L + P L+DG IP A A++KGD Sbjct: 69 WSLGRAEAEEIDQLNILHATMLAMQRAINALTIQPDFVLVDGNRIPSLNM-PAQAIVKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD M+I +++P+YGF H GYPT H + + + G + HR + Sbjct: 128 SLVAEISAASILAKVARDHEMQILDQQFPEYGFAQHKGYPTKLHIEKLAQFGATPFHRKS 187 Query: 201 FRPLRNLS 208 F P+R + Sbjct: 188 FAPVRKIL 195 >gi|320354477|ref|YP_004195816.1| RNase HII [Desulfobulbus propionicus DSM 2032] gi|320122979|gb|ADW18525.1| RNase HII [Desulfobulbus propionicus DSM 2032] Length = 224 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 83/212 (39%), Positives = 123/212 (58%), Gaps = 8/212 (3%) Query: 1 MFCNSIPERP---HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI 57 +F + +P P F E ++ + VAG+DE GRG LAGPVV A +IL + Sbjct: 6 LFADLLPFSPHTDTFYFERQLQRQGFARVAGVDEAGRGPLAGPVVAACVILPADGDFTPY 65 Query: 58 NDSKKISHKKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK ++ ++RE L+E ++++ A I + AS + I++ NI +A+L A+ A+E +P Sbjct: 66 VDSKTLTRRQRERLFELLSTNGARIGVGEASPREIEQVNILQASLLAMKRAMEACGQVPP 125 Query: 117 SALIDGRSIPEDLPCQ----AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 + D + ++KG+S S SIAAASI+AKVTRDR+M AH +P YG Sbjct: 126 GGVPDFLLVDGRFEVPVPVGQRTLVKGESKSASIAAASIVAKVTRDRMMADAHALFPQYG 185 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 FD H GYPT H++ I+ GP +HR TFR + Sbjct: 186 FDRHQGYPTKAHREAIRNHGPCPLHRRTFRGV 217 >gi|255004020|ref|ZP_05278821.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Virginia] Length = 239 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKK 67 P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 5 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 64 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG P Sbjct: 65 REELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 124 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T H Q Sbjct: 125 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 184 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 +K G + HR TF P++ LS Sbjct: 185 LKLYGKTAQHRSTFAPVKQLS 205 >gi|254994768|ref|ZP_05276958.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Mississippi] Length = 239 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKK 67 P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 5 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 64 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG P Sbjct: 65 REELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 124 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T H Q Sbjct: 125 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 184 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 +K G + HR TF P++ LS Sbjct: 185 LKLYGKTAQHRSTFAPVKQLS 205 >gi|171059517|ref|YP_001791866.1| ribonuclease HII [Leptothrix cholodnii SP-6] gi|170776962|gb|ACB35101.1| Ribonuclease H [Leptothrix cholodnii SP-6] Length = 218 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 85/199 (42%), Positives = 122/199 (61%), Gaps = 8/199 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AG+DE GRG LAGPVV AA+ILD G+ DSK ++ ++RE L Sbjct: 18 LHFER------VGLMAGVDEAGRGPLAGPVVAAAVILDELQPIAGLADSKILTERRRERL 71 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I + A I+ AS + ID+ NI +AT+ A+ AVE L++ P L+DG +P Sbjct: 72 FDEIRAKALAFCIAQASVEEIDRLNILQATMLAMKRAVEGLRLKPAQVLVDGNRVPVLR- 130 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A A++KGD+ +I+AASI+AKV RDRL + H+ YP YGF H GYPTA H Q +K+ Sbjct: 131 IPAEAIVKGDAKVPAISAASILAKVHRDRLCQALHELYPHYGFAVHKGYPTAAHLQALKD 190 Query: 191 KGPSCIHRLTFRPLRNLSV 209 GP HR ++ P+R + Sbjct: 191 HGPCESHRKSYAPVREAGL 209 >gi|209518722|ref|ZP_03267538.1| Ribonuclease H [Burkholderia sp. H160] gi|209500836|gb|EEA00876.1| Ribonuclease H [Burkholderia sp. H160] Length = 249 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 117/184 (63%), Gaps = 3/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYEKITSSA-II 81 V G+DE GRG LAGPVV AA+I DP + G++DSK +S KRE LY+KI A Sbjct: 30 DIVCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKALSANKREALYDKIVERALAY 89 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I+SAS + ID NI AT+ A+ AVE L V+P +DG P ++ AVI GD+ Sbjct: 90 CIASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKVDGNRCPTLS-IRSEAVIGGDA 148 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + SI+AASI+AKVTRDR++ H+ YP YGFD+H GY T +H ++E GP HR +F Sbjct: 149 LVKSISAASILAKVTRDRMLVELHQAYPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSF 208 Query: 202 RPLR 205 P+R Sbjct: 209 APVR 212 >gi|97182194|sp|Q5PBG2|RNH2_ANAMM RecName: Full=Ribonuclease HII; Short=RNase HII Length = 243 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKK 67 P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 9 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 68 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG P Sbjct: 69 REELFCKITAHAKYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 128 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T H Q Sbjct: 129 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 188 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 +K G + HR TF P++ LS Sbjct: 189 LKLYGKTAQHRSTFAPVKQLS 209 >gi|307244937|ref|ZP_07527034.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247112|ref|ZP_07529164.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253891|ref|ZP_07535743.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258345|ref|ZP_07540086.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854102|gb|EFM86310.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856361|gb|EFM88512.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306863095|gb|EFM95037.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867529|gb|EFM99376.1| Ribonuclease HII [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 186 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 85/185 (45%), Positives = 114/185 (61%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+IL PNN G+ DSKK+S KKR L E+I + A S+ Sbjct: 1 MIAGVDEVGRGPLVGAVVTAAVILAPNNPIEGLADSKKLSEKKRLLLAEEIKAKALCWSL 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P L+DG IP A AVIKGDS+ Sbjct: 61 GRAEPEEIDRLNILHATMLAMQRAVAGLNIQPDFVLVDGNRIPTLPM-PAQAVIKGDSLV 119 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD+ M +YP+YGF H GYPT H + +++ G + HR +F P Sbjct: 120 AEISAASILAKVARDQEMAELDVQYPEYGFAKHKGYPTKLHFEKLEQFGATPFHRKSFAP 179 Query: 204 LRNLS 208 ++ + Sbjct: 180 VKKIL 184 >gi|260220952|emb|CBA29032.1| Ribonuclease HII [Curvibacter putative symbiont of Hydra magnipapillata] Length = 193 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPVV AA+ILD G+NDSKK+S +RE+L+++I + A S Sbjct: 9 GLVAGVDEAGRGPLAGPVVAAAVILDDLRPIAGLNDSKKLSAARREKLFDEIRAKALCCS 68 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID+ NI +ATL A+ AVE L++ P L+DG +P A A++KGD+ Sbjct: 69 IAQASVEEIDEINILQATLLAMRRAVEGLRLKPAKVLVDGNRLPVLDVL-AEAIVKGDAT 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR +YP YGF +H GY TA+H ++ G HR TF Sbjct: 128 VPAISAASILAKVTRDRWCAELDARYPQYGFATHKGYGTAEHLAALQTHGACPEHRKTFA 187 Query: 203 PL 204 P+ Sbjct: 188 PV 189 >gi|307294539|ref|ZP_07574381.1| Ribonuclease H [Sphingobium chlorophenolicum L-1] gi|306879013|gb|EFN10231.1| Ribonuclease H [Sphingobium chlorophenolicum L-1] Length = 199 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 85/200 (42%), Positives = 118/200 (59%), Gaps = 5/200 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + VAG+DE GRG LAGPVV AA+IL + P G+NDSK++S +R Sbjct: 2 PDFLHE---LRHHPGLVAGVDEAGRGPLAGPVVAAAVILRREDCPEGLNDSKQLSAARRA 58 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I + A + AS + ID NI AT+ A+ AVE L L+DG P+ Sbjct: 59 VLEGEIKARALCWGLGVASVEEIDSINILWATMLAMTRAVEALTHDCAHVLVDGNRCPQ- 117 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + AV++GD+ LSIAAASI+AK RDR+M A +P YG++S+ GY + KH + Sbjct: 118 WRWASTAVVEGDAKCLSIAAASILAKEARDRMMVEAAAAHPHYGWESNKGYGSPKHLAAL 177 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 +E GP+ +HR +F P+ LS Sbjct: 178 REHGPTPLHRRSFAPVAQLS 197 >gi|83313088|ref|YP_423352.1| ribonuclease HII [Magnetospirillum magneticum AMB-1] gi|11387098|sp|Q50412|RNH2_MAGMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|1054584|dbj|BAA06983.1| unnamed protein product [Magnetospirillum magneticum AMB-1] gi|82947929|dbj|BAE52793.1| Ribonuclease HII [Magnetospirillum magneticum AMB-1] Length = 201 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 121/199 (60%), Gaps = 9/199 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISH 65 P LE + V GIDEVGRG LAGPVV AA+ILDP +P ++DSKK+S Sbjct: 2 PDLALEFEIG----GIVCGIDEVGRGPLAGPVVAAAVILDPARLPKTLLERLDDSKKLSK 57 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 + REEL E + ++AI+ AS + ID+ NI +AT A+ A + L AL+DG Sbjct: 58 RNREELAELVPATAILGFGEASVEEIDRINILQATFLAMRRAYDALGRECAHALVDGNRP 117 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P LPC V+ GD ISLSIAAAS++AKV RD +M + +P++G++ + GY TA+H Sbjct: 118 P-GLPCPVRCVVGGDGISLSIAAASVVAKVRRDAMMADLARAHPEFGWERNAGYGTAEHL 176 Query: 186 QVIKEKGPSCIHRLTFRPL 204 +K GP+ HR +F P+ Sbjct: 177 DALKRLGPTPHHRRSFAPV 195 >gi|115380723|ref|ZP_01467629.1| ribonuclease HII [Stigmatella aurantiaca DW4/3-1] gi|310820560|ref|YP_003952918.1| ribonuclease hII [Stigmatella aurantiaca DW4/3-1] gi|115362268|gb|EAU61597.1| ribonuclease HII [Stigmatella aurantiaca DW4/3-1] gi|309393632|gb|ADO71091.1| Ribonuclease HII [Stigmatella aurantiaca DW4/3-1] Length = 282 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 120/196 (61%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK-ISHKKREE 70 E + E+ + VAG+DE G LAGPVV AA IL N G++DSKK + ++REE Sbjct: 67 LRYETELWEQGLERVAGVDEAGMAPLAGPVVAAAAILPRNYRLKGLDDSKKILDAERREE 126 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L + A+ ++ A + ID+ NI+ A L A+ AV L + P AL+D R IP + Sbjct: 127 LAAALKRDAVAWAVGIAEVEEIDRLNIYHAGLLAMRRAVLGLGLTPDYALVDARKIP-EC 185 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC +I+GD++S+SIAAAS++AK +RDR+M +YP YG H GYPT +H Q ++ Sbjct: 186 PCPQRGIIRGDALSMSIAAASVLAKTSRDRMMGELDARYPGYGLAVHKGYPTPQHVQALR 245 Query: 190 EKGPSCIHRLTFRPLR 205 EKG IHR +F P+R Sbjct: 246 EKGVLPIHRRSFGPVR 261 >gi|78044826|ref|YP_360258.1| ribonuclease HII [Carboxydothermus hydrogenoformans Z-2901] gi|97182364|sp|Q3AC76|RNH2_CARHZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|77996941|gb|ABB15840.1| ribonuclease HII [Carboxydothermus hydrogenoformans Z-2901] Length = 231 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 123/206 (59%), Gaps = 4/206 (1%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 N++P + ++E + VAG DE GRG +AGPVV A +++ P ++DSK Sbjct: 18 LDNNLPF--NLQIENQLFSSGYELVAGGDEAGRGPVAGPVVAAIVVIKPGIYIPEVDDSK 75 Query: 62 KISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K+S KKRE+L+E+I + S++ ID+ NI++AT A A+++L + P + ++ Sbjct: 76 KLSSKKREKLFEEIINLVTDWSVAVVGPDLIDRLNIYQATKFAFKAALDSLSIKPEALIL 135 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 D + + +++K D IS ++A ASI+AKV RD++M K +P YGF + GY Sbjct: 136 DALKLT-GFSGKQVSMVKADEISFAVACASILAKVIRDKIMEQYDKDFPGYGFKKNKGYL 194 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRN 206 T +H++ ++ GPS IHR +F P+++ Sbjct: 195 TREHREALELLGPSPIHRKSFEPIKS 220 >gi|15806947|ref|NP_295672.1| ribonuclease HII [Deinococcus radiodurans R1] gi|6459735|gb|AAF11501.1|AE002033_9 ribonuclease HII [Deinococcus radiodurans R1] Length = 212 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 70/200 (35%), Positives = 110/200 (55%), Gaps = 3/200 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + + VAG+DE GRGA AGP+ VAA+IL + + DSK++S RE Sbjct: 8 PDWAYEREHWRRGHFRVAGVDEAGRGAWAGPLTVAAVILPGTSQEYPFRDSKQLSPAARE 67 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E ++ A+ ++ A + ID+ N+ AT A A+ L+ P++ + D + D Sbjct: 68 EYAAEVRRVAVAWAVEHAWPEEIDRLNVLGATHAAALRAIARLEPPPQALVTDYLRLRAD 127 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 A + D++S S+AAAS++AK RDRLMR ++P YGF +H GY H+ + Sbjct: 128 --LPLSAPPRADALSYSVAAASLLAKTERDRLMRELDAEFPGYGFAAHKGYGAPAHRAAL 185 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 +E G + HR ++ P+R L Sbjct: 186 RELGVTEQHRRSYAPIRALL 205 >gi|293398148|ref|ZP_06642353.1| ribonuclease HII [Neisseria gonorrhoeae F62] gi|291611411|gb|EFF40481.1| ribonuclease HII [Neisseria gonorrhoeae F62] Length = 212 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 82/206 (39%), Positives = 112/206 (54%), Gaps = 3/206 (1%) Query: 6 IPERPHFELEAMVREKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 +P F + N+ + AG+DE GRG L G V AA+IL G+ DSKK+ Sbjct: 1 MPSETLFRRHRTIPTGNIMHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKL 60 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S KKR+ L E I A+ +++++ + I NI AT+ A+ AV L P IDG Sbjct: 61 SEKKRDALAEMIKEQAVAWHVAASTPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDG 120 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 IPE L A AV+KGDS + I+AAS++AK RD M ++ P YGFD H GY T Sbjct: 121 NRIPEHLGIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTK 180 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNLS 208 +H + +K+ G HR F P+RNL Sbjct: 181 QHLEALKQYGVLPEHRRDFAPVRNLL 206 >gi|121726559|ref|ZP_01679808.1| ribonuclease HII [Vibrio cholerae V52] gi|262189887|ref|ZP_06048211.1| ribonuclease HII [Vibrio cholerae CT 5369-93] gi|121631012|gb|EAX63391.1| ribonuclease HII [Vibrio cholerae V52] gi|262034231|gb|EEY52647.1| ribonuclease HII [Vibrio cholerae CT 5369-93] Length = 206 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 89/202 (44%), Positives = 120/202 (59%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPKLPM-EAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|161524444|ref|YP_001579456.1| ribonuclease HII [Burkholderia multivorans ATCC 17616] gi|189350801|ref|YP_001946429.1| ribonuclease HII [Burkholderia multivorans ATCC 17616] gi|221198308|ref|ZP_03571354.1| ribonuclease HII [Burkholderia multivorans CGD2M] gi|221208247|ref|ZP_03581251.1| ribonuclease HII [Burkholderia multivorans CGD2] gi|221215471|ref|ZP_03588435.1| ribonuclease HII [Burkholderia multivorans CGD1] gi|160341873|gb|ABX14959.1| Ribonuclease H [Burkholderia multivorans ATCC 17616] gi|189334823|dbj|BAG43893.1| ribonuclease H [Burkholderia multivorans ATCC 17616] gi|221164655|gb|EED97137.1| ribonuclease HII [Burkholderia multivorans CGD1] gi|221171895|gb|EEE04338.1| ribonuclease HII [Burkholderia multivorans CGD2] gi|221182240|gb|EEE14641.1| ribonuclease HII [Burkholderia multivorans CGD2M] Length = 210 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 89/188 (47%), Positives = 120/188 (63%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LYE I S+ Sbjct: 17 FNRPDEIVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDALYELIVSN 76 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++SAS ID NI AT+ A+ AVE L V+P A IDG P +A A++ Sbjct: 77 ARAYCVASASVDEIDSLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLS-VRAEAIV 135 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+++P YGF+ H GY T +H ++E GP H Sbjct: 136 SGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTPQHLAALREHGPCEAH 195 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 196 RRSFAPVR 203 >gi|262276513|ref|ZP_06054322.1| ribonuclease HII [Grimontia hollisae CIP 101886] gi|262220321|gb|EEY71637.1| ribonuclease HII [Grimontia hollisae CIP 101886] Length = 200 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 111/184 (60%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR L+E+I A S Sbjct: 12 RLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTDKKRAVLFEEIKEKALAWS 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG +P+ L A AV+KGD Sbjct: 72 LGRAEPEEIDELNILSATMLAMERAVAGLNIKPDFVLIDGNRVPQGLTVPAQAVVKGDLR 131 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RDR M KYP YGF H GYPT H + + G HR +F+ Sbjct: 132 VAEISAASILAKVVRDREMEALDAKYPQYGFAKHKGYPTKVHFEALATHGAILEHRKSFK 191 Query: 203 PLRN 206 P++ Sbjct: 192 PVKK 195 >gi|330504230|ref|YP_004381099.1| ribonuclease HII [Pseudomonas mendocina NK-01] gi|328918516|gb|AEB59347.1| ribonuclease HII [Pseudomonas mendocina NK-01] Length = 208 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 116/186 (62%), Gaps = 2/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE L+++I A Sbjct: 12 ELVAGVDEVGRGPLCGAVVTAAVILDPARPIIGLNDSKKLTEARRELLFDEIREKALAWC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L V PR ALIDG P+ + V+KGDS Sbjct: 72 IARAEVEEIDRLNILHATMLAMQRAVEGLSVTPRLALIDGNRCPKLA-VPSAPVVKGDSR 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M + YP YG H GYPT H + ++ GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMVEMDRLYPGYGIAGHKGYPTPVHLEALQRLGPTPIHRRSFA 190 Query: 203 PLRNLS 208 P+R L Sbjct: 191 PVRALL 196 >gi|331085160|ref|ZP_08334246.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407943|gb|EGG87433.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 254 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 119/196 (60%), Gaps = 6/196 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E R+ + GIDEVGRG LAGPVV A+IL ++ +NDSKK++ K+REELY Sbjct: 61 SYENKYRDAAF--ICGIDEVGRGPLAGPVVAGAVILPKDSQILYLNDSKKLTEKRREELY 118 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-P 130 E I A+ + I S ID+ NI +AT +A++ AV L V P L D +IP Sbjct: 119 EVIMREAVAVGIGIVSPARIDEINILQATYEAMWEAVGKLCVEPNVLLNDAVTIPMIPPH 178 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S+SIAAASI+AKVTRDRLM + P YGF S+ GY +++H +K+ Sbjct: 179 IVQVPIIKGDAKSVSIAAASIVAKVTRDRLMTEYEEVLPGYGFASNKGYGSSEHIAALKK 238 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR +F + N Sbjct: 239 YGPTPIHRRSF--IHN 252 >gi|300691590|ref|YP_003752585.1| ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07] gi|299078650|emb|CBJ51308.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07] Length = 242 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 79/211 (37%), Positives = 117/211 (55%), Gaps = 9/211 (4%) Query: 4 NSIPERPHFELEAM----VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND 59 + P+ P L + + G+DE GRG LAGPV AA++L+P G+ D Sbjct: 9 DDSPDAPQLALPLAQLPAAGRRARRILCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLAD 68 Query: 60 SKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIP 115 SK ++ KKRE LY++I A ++ A+ + ID+ NI AT+ A+ AV+ V+P Sbjct: 69 SKVLTAKKREALYDEIVEKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLP 128 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 +DG P+ A++KGD++ +I+AASI+AKVTRDR + H +P YGFD Sbjct: 129 DLVQVDGNRCPQVAFA-VEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDV 187 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 H GY T +H I+ G + HR +F P+R Sbjct: 188 HAGYGTPQHLAAIELHGVTPHHRRSFAPVRR 218 >gi|94310391|ref|YP_583601.1| ribonuclease HII [Cupriavidus metallidurans CH34] gi|189043647|sp|Q1LNE4|RNH2_RALME RecName: Full=Ribonuclease HII; Short=RNase HII gi|93354243|gb|ABF08332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Cupriavidus metallidurans CH34] Length = 226 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 79/187 (42%), Positives = 115/187 (61%), Gaps = 5/187 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 + G+DE GRG LAGPV AA++L+P G+ DSK +S +KRE L+++I A Sbjct: 24 QRLCGVDEAGRGPLAGPVYAAAVVLNPARQIRGLADSKILSAEKREALFDRICDHALGWH 83 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I+SAS + ID NI A++ A+ AV+ VIP +DG P+ A++KG Sbjct: 84 IASASVEEIDSINILHASMLAMQRAVQGLAASGVIPDLVQVDGNRCPQVAF-PVEAIVKG 142 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ +I+AASI+AKV RDR + H++YP+YGFDSH GYPT +H +++ G + HR Sbjct: 143 DAKVRAISAASILAKVARDRELLKLHQEYPEYGFDSHFGYPTPQHFTALEQFGATPHHRR 202 Query: 200 TFRPLRN 206 +F P+R Sbjct: 203 SFAPVRK 209 >gi|229829016|ref|ZP_04455085.1| hypothetical protein GCWU000342_01101 [Shuttleworthia satelles DSM 14600] gi|229792179|gb|EEP28293.1| hypothetical protein GCWU000342_01101 [Shuttleworthia satelles DSM 14600] Length = 260 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 86/189 (45%), Positives = 114/189 (60%), Gaps = 3/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + VAG+DEVGRG LAGP+V AA+IL + GINDSKK+S KKREELY Sbjct: 64 FEREAWQS-CQYVAGMDEVGRGPLAGPLVTAAVILPRGHRILGINDSKKVSAKKREELYR 122 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A + I S ID+ N+ +AT +A+ AV L P L D ++P L + Sbjct: 123 QIMEEALAVGIGMNSPGRIDQINVLQATYEAMREAVSQLDPAPELVLNDAVTVP-GLLVR 181 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I GD+ S+SI AASI+AKVTRD +M K YP YGF + GY TA H + +++ G Sbjct: 182 QIPIIHGDARSISIGAASIVAKVTRDHMMEDYDKTYPGYGFAKNKGYGTADHIRALRKMG 241 Query: 193 PSCIHRLTF 201 P+ IHR +F Sbjct: 242 PTPIHRRSF 250 >gi|332678593|gb|AEE87722.1| Ribonuclease HII [Francisella cf. novicida Fx1] Length = 187 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A +I Sbjct: 2 IILGIDEAGRGPLSGPVVAAGVILDRDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 62 VEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P Sbjct: 121 IEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKP 180 Query: 204 LRNLS 208 ++ L Sbjct: 181 VQMLL 185 >gi|284047854|ref|YP_003398193.1| Ribonuclease H [Acidaminococcus fermentans DSM 20731] gi|283952075|gb|ADB46878.1| Ribonuclease H [Acidaminococcus fermentans DSM 20731] Length = 270 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 83/198 (41%), Positives = 123/198 (62%), Gaps = 2/198 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +LE + M VAG DE GRG LAGP+V AA+IL + G+NDSKK++ +RE LY Sbjct: 60 DLERAFWARGMDQVAGCDEAGRGPLAGPLVTAAVILPHSIWLPGLNDSKKVTAARREILY 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ +++S + ID+ NI++A A+ + +L+V P++A+ D E Sbjct: 120 GEILEQAVSVTVSILGPREIDRLNIYQAAKTAMTLCLTHLKVRPQAAVTDAM-PLEIPGM 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++ GDS S ++AAASIIAKVTRD LM ++YP YGF H GY TA+H Q I + Sbjct: 179 EVEDLVHGDSRSAAVAAASIIAKVTRDHLMEDMDRQYPQYGFAKHKGYGTARHIQAILDC 238 Query: 192 GPSCIHRLTFRPLRNLSV 209 GP+ HR +F PL+++ + Sbjct: 239 GPTPWHRRSFEPLKSMDL 256 >gi|226356414|ref|YP_002786154.1| ribonuclease HII [Deinococcus deserti VCD115] gi|226318404|gb|ACO46400.1| putative Ribonuclease H (RNase HII) [Deinococcus deserti VCD115] Length = 218 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 3/200 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + + VAG+DE GRGA AGPV VAA+IL + DSK++S +RE Sbjct: 8 PDWAYEREHWRRGYFRVAGVDEAGRGAWAGPVTVAAVILPGLAQEYPFRDSKQLSASQRE 67 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +++ A ++ A + I++ NI AT A A+ L P++ + D + Sbjct: 68 ACAQEVRRVALSYAVEHAWPEEIERLNILGATHAAAARALARLDPAPQALITDYLKLRT- 126 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 A + D++S ++AAAS++AK RD LM ++P YGF H GY H+ + Sbjct: 127 -SLPLSAPPRADALSYTVAAASLLAKTERDHLMLELDLQHPGYGFAGHKGYGAPAHRAAL 185 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 E G S +HR ++ P+R L Sbjct: 186 AELGVSPVHRRSYAPIRALL 205 >gi|295094900|emb|CBK83991.1| Ribonuclease HII [Coprococcus sp. ART55/1] Length = 251 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 121/196 (61%), Gaps = 6/196 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE E +K + GIDEVGRG LAGPVV AA+IL + +NDSK+++ KKRE L Sbjct: 59 FEFERKYADKGY--ICGIDEVGRGPLAGPVVAAAVILPKDCDILYLNDSKQLTPKKREAL 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I + A+ + + A+ + ID+ N+ A +A+ A+ LQV L++ + Sbjct: 117 YDEIMAKAVAVGVGMANEKVIDEINVLNADYEAMKQAISKLQV-KPQLLLNDAVNIPGVD 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD++S SIAAASIIAKVTRDRLM YP YGF ++GY TA+H +K+ Sbjct: 176 IEQVGIIKGDTLSASIAAASIIAKVTRDRLMVEYDSLYPGYGFAKNMGYGTAEHIDALKK 235 Query: 191 KGPSCIHRLTFRPLRN 206 GP IHR TF ++N Sbjct: 236 IGPCAIHRRTF--IKN 249 >gi|229528751|ref|ZP_04418141.1| ribonuclease HII [Vibrio cholerae 12129(1)] gi|229332525|gb|EEN98011.1| ribonuclease HII [Vibrio cholerae 12129(1)] Length = 206 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 89/202 (44%), Positives = 120/202 (59%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPKLPM-EAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|15618043|ref|NP_224327.1| ribonuclease HII [Chlamydophila pneumoniae CWL029] gi|15835655|ref|NP_300179.1| ribonuclease HII [Chlamydophila pneumoniae J138] gi|16752925|ref|NP_445196.1| ribonuclease HII [Chlamydophila pneumoniae AR39] gi|33241455|ref|NP_876396.1| ribonuclease HII [Chlamydophila pneumoniae TW-183] gi|7227930|sp|Q9Z962|RNH2_CHLPN RecName: Full=Ribonuclease HII; Short=RNase HII gi|4376382|gb|AAD18272.1| Ribonuclease HII [Chlamydophila pneumoniae CWL029] gi|8163472|gb|AAF73691.1| ribonuclease HII [Chlamydophila pneumoniae AR39] gi|8978493|dbj|BAA98330.1| ribonuclease HII [Chlamydophila pneumoniae J138] gi|33235963|gb|AAP98053.1| ribonuclease H II [Chlamydophila pneumoniae TW-183] Length = 214 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ VAGIDE GRG LAGPVV +A IL + G+NDSKK+S K+R ++ Sbjct: 16 AFEKELVSEDFSVVAGIDEAGRGPLAGPVVASACILPKGKVFPGVNDSKKLSPKQRAQVR 75 Query: 73 EKITS--SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + I S + ID+ NI +AT +A+ A+ +L + P L+DG +P D Sbjct: 76 DALMQDPEVCFGIGVISVERIDQVNILEATKEAMLQAISSLPISPDILLVDGLYLPHD-- 133 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I+GD+ S SIAAASI+AK RD LM H+ YP+YGFD H GY T+ H + I+ Sbjct: 134 IPCKKIIQGDAKSASIAAASILAKEHRDDLMLQLHRLYPEYGFDRHKGYGTSLHVEAIRR 193 Query: 191 KGPSCIHRLTFRPLRNL 207 GPS HR +F P++ + Sbjct: 194 YGPSPCHRKSFSPIKQM 210 >gi|304312462|ref|YP_003812060.1| Ribonuclease HII [gamma proteobacterium HdN1] gi|301798195|emb|CBL46417.1| Ribonuclease HII [gamma proteobacterium HdN1] Length = 201 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 81/188 (43%), Positives = 113/188 (60%), Gaps = 2/188 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 +++ +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S KKRE+L E+I + A Sbjct: 10 NRDVGLIAGVDEVGRGPLIGAVVAAAVILDPAKPIEGLTDSKKLSEKKREQLAEQIRAQA 69 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 +I A + ID+ NI +A+L A+ AV L + P L+DG P A++K Sbjct: 70 LAWAIGRAEAEEIDRINILQASLLAMQRAVLQLAIQPDLVLVDGNRCPRL-SLPCRAIVK 128 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + I+AASI+AKV RD+ M ++YP YG H GYPTA H I+ G + HR Sbjct: 129 GDLLVPCISAASILAKVARDQEMLEMDRRYPHYGLAQHKGYPTAAHLAAIEIHGIAPEHR 188 Query: 199 LTFRPLRN 206 +F P++ Sbjct: 189 RSFGPIKK 196 >gi|303231457|ref|ZP_07318188.1| ribonuclease HII [Veillonella atypica ACS-049-V-Sch6] gi|302513894|gb|EFL55905.1| ribonuclease HII [Veillonella atypica ACS-049-V-Sch6] Length = 266 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 86/197 (43%), Positives = 130/197 (65%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDEGLYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREVL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D DL Sbjct: 123 YDIIMEEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLDVPAEAVVADAMK-LPDLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++YP YGF H GY T H++ +++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDEEYPGYGFGIHKGYYTELHKEAVEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|254374688|ref|ZP_04990169.1| ribonuclease H [Francisella novicida GA99-3548] gi|151572407|gb|EDN38061.1| ribonuclease H [Francisella novicida GA99-3548] Length = 187 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A +I Sbjct: 2 IILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 62 VEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWNYNSEAIVKGDSKI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P Sbjct: 121 IEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKP 180 Query: 204 LRNLS 208 ++ L Sbjct: 181 VQMLL 185 >gi|288941772|ref|YP_003444012.1| Ribonuclease H [Allochromatium vinosum DSM 180] gi|288897144|gb|ADC62980.1| Ribonuclease H [Allochromatium vinosum DSM 180] Length = 206 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 110/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DE GRG LAGPV AA+ILDP GI DSKK+S +RE L I A S+ Sbjct: 12 LIAGVDEAGRGPLAGPVCAAAVILDPARPIAGIGDSKKLSPARRERLEPLIRDQALAWSV 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + AS + ID+ NI +ATL A+ AVE+LQ+ P ALIDG P+ A A++ GD Sbjct: 72 AWASAEEIDRLNILQATLLAMRRAVESLQIRPVKALIDGNRCPQL-DIAAEAIVGGDGSV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKV RDR M + P YGF H GYPT +H I+ GP HRL+F P Sbjct: 131 PAIGAASILAKVARDRFMLELDAECPGYGFAKHKGYPTREHLNAIERLGPCRWHRLSFAP 190 Query: 204 LRN 206 L Sbjct: 191 LSK 193 >gi|325262275|ref|ZP_08129012.1| ribonuclease HII [Clostridium sp. D5] gi|324032107|gb|EGB93385.1| ribonuclease HII [Clostridium sp. D5] Length = 254 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 93/195 (47%), Positives = 121/195 (62%), Gaps = 6/195 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + GIDEVGRG LAGPVV A+IL + INDSKK+S KKREELY Sbjct: 61 RYEKKYDE--HTFICGIDEVGRGPLAGPVVAGAVILPKDCEILYINDSKKLSAKKREELY 118 Query: 73 EKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ + I AS IDK NI +AT +A+ AV+ L+ P L D +IP + Sbjct: 119 DEIMDKAVATGIGMASPARIDKINILQATYEAMRIAVQELKTAPTLLLNDAVTIP-GITL 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASIIAKVTRDRLM K P YGF + GY +A H + +K+ Sbjct: 178 PQVPIIKGDAKSVSIAAASIIAKVTRDRLMLEYDKILPGYGFAENKGYGSAAHIEALKKM 237 Query: 192 GPSCIHRLTFRPLRN 206 GP+ IHR++F ++N Sbjct: 238 GPTPIHRVSF--IKN 250 >gi|315924213|ref|ZP_07920439.1| ribonuclease HII [Pseudoramibacter alactolyticus ATCC 23263] gi|315622615|gb|EFV02570.1| ribonuclease HII [Pseudoramibacter alactolyticus ATCC 23263] Length = 262 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 83/190 (43%), Positives = 110/190 (57%), Gaps = 3/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +E R + ++GIDEVGRG LAGPVV AA+IL + GI+DSKKIS K+RE L Sbjct: 68 AIERAARAQGYALISGIDEVGRGPLAGPVVAAAVILPETSAIAGIDDSKKISAKRRETLN 127 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I A I I + ID NI +AT A+ +AV L P LID +P Sbjct: 128 AAIRDEALAIGIGVVDPETIDAMNILEATKLAMTNAVAQLVPRPDLLLIDALKLPS--QI 185 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 AV+ GD+ I AASI+AKV RD LM+ + YP+YGF+ ++GY TA H + I+ Sbjct: 186 PVQAVVHGDARCYCIGAASIVAKVYRDHLMQEYARTYPEYGFERNMGYGTAAHIEAIQTC 245 Query: 192 GPSCIHRLTF 201 GP+ +HR +F Sbjct: 246 GPTPVHRRSF 255 >gi|254363172|ref|ZP_04979221.1| ribonuclease H [Mannheimia haemolytica PHL213] gi|261493949|ref|ZP_05990457.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494766|ref|ZP_05991245.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE] gi|153095066|gb|EDN75617.1| ribonuclease H [Mannheimia haemolytica PHL213] gi|261309583|gb|EEY10807.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310381|gb|EEY11576.1| ribonuclease H [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 198 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 88/192 (45%), Positives = 114/192 (59%), Gaps = 2/192 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 N +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR+ L E+I Sbjct: 2 NEFIYPNARLIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGLTDSKKLSEKKRQALAEEI 61 Query: 76 TSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A S+ A ID+ NI AT+ A+ AV L + P LIDG P+ A Sbjct: 62 KAKALSWSLGRAEPTEIDELNILNATMLAMQRAVAGLHIQPDFVLIDGNRPPKLPM-PAQ 120 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 AV+KGDS+ I+AASIIAKV RD+ M +++P YGF H GYPT H + + E G + Sbjct: 121 AVVKGDSLVAEISAASIIAKVARDQEMDELDQQFPQYGFAQHKGYPTKLHFEKLAEFGAT 180 Query: 195 CIHRLTFRPLRN 206 HR +F P+R Sbjct: 181 PYHRKSFAPVRK 192 >gi|223044238|ref|ZP_03614275.1| ribonuclease HII (RNase HII) [Staphylococcus capitis SK14] gi|222442388|gb|EEE48496.1| ribonuclease HII (RNase HII) [Staphylococcus capitis SK14] Length = 256 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 114/197 (57%), Gaps = 4/197 (2%) Query: 14 LEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + N + GIDEVGRG LAGPVV A+IL+ + G+NDSKK+ K+R L Sbjct: 61 YENEILNHDNEALICGIDEVGRGPLAGPVVACAVILNKGHHYLGLNDSKKVPAKQRLILN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E++ ++ + A+ Q ID NI+KAT A+ A+ L + P LID + D Sbjct: 121 EELKNNVTSYAYGIATPQEIDDLNIYKATQVAMQRAINQLSIQPTHLLIDAMKLDND--I 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AK RD M+ YP+YGF+ +VGY T +H + I Sbjct: 179 PQISIIKGDAKSVSIAAASIMAKEYRDNYMKELANDYPNYGFEKNVGYGTKQHLEAIDTF 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P++++ Sbjct: 239 GVINEHRKSFEPIKSML 255 >gi|189425513|ref|YP_001952690.1| ribonuclease HII [Geobacter lovleyi SZ] gi|189421772|gb|ACD96170.1| Ribonuclease H [Geobacter lovleyi SZ] Length = 208 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 89/200 (44%), Positives = 118/200 (59%), Gaps = 2/200 (1%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P + E R VAGIDE GRG LAGPV+ AA+IL+P+ G+NDSKK++ + Sbjct: 9 PPHDLYHFERQARAAGYTFVAGIDEAGRGPLAGPVIAAAVILNPDAPVEGVNDSKKLTEQ 68 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +RE L+E I + A + + ID+ NI +AT A+ AV+ L P LIDG + Sbjct: 69 RRERLFELIMARALAVGVGQVDAATIDQINILQATRRAMLAAVQALSASPDLLLIDGITT 128 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + +GDS S SIAAASIIAKVTRDR+M K YPDYGF H GY +A H Sbjct: 129 IA-SPLPQQTIKQGDSRSASIAAASIIAKVTRDRMMGAYDKLYPDYGFLRHKGYGSAVHL 187 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 +++ GP IHR+TF ++ Sbjct: 188 AALRQHGPCPIHRMTFAGVK 207 >gi|208779943|ref|ZP_03247287.1| ribonuclease HII [Francisella novicida FTG] gi|208744398|gb|EDZ90698.1| ribonuclease HII [Francisella novicida FTG] Length = 187 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A +I Sbjct: 2 IILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 62 VEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P Sbjct: 121 IEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKP 180 Query: 204 LRNLS 208 ++ L Sbjct: 181 VQMLL 185 >gi|254420769|ref|ZP_05034493.1| ribonuclease HII [Brevundimonas sp. BAL3] gi|196186946|gb|EDX81922.1| ribonuclease HII [Brevundimonas sp. BAL3] Length = 213 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 87/200 (43%), Positives = 118/200 (59%), Gaps = 2/200 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P LE ++ ++ PV G+DE GRG AGPV AA+IL+P+++P GI+DSK ++ K+R Sbjct: 12 PTLALETVLIQRVNGPVCGVDEAGRGPWAGPVSAAAVILNPDDLPPGIDDSKALTEKRRA 71 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I + A+ + AS + I+ NI AT A+ AVE L V P +AL+DG Sbjct: 72 ALEPEIKARAVAWGVGFASVEEIEDLNILHATGLAMCRAVEQLAVQPAAALVDGNYRFRL 131 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 C+ V+ GD +SLSIAAASI+AK RDRLM +YP YGF H GY HQ + Sbjct: 132 P-CEIQTVVGGDGLSLSIAAASILAKTARDRLMIDLDAQYPGYGFARHKGYNAPIHQAAL 190 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 K GP HR + P+R L Sbjct: 191 KTLGPCPAHRRGWSPIRALL 210 >gi|268683032|ref|ZP_06149894.1| ribonuclease HII [Neisseria gonorrhoeae PID332] gi|268623316|gb|EEZ55716.1| ribonuclease HII [Neisseria gonorrhoeae PID332] Length = 212 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I A+ +++ Sbjct: 24 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAVAWHVAA 83 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ++ + I NI AT+ A+ AV L P IDG IPE L A AV+KGDS + Sbjct: 84 STPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 143 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M ++ P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 144 ISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 203 Query: 206 NLS 208 NL Sbjct: 204 NLL 206 >gi|240124405|ref|ZP_04737361.1| ribonuclease HII [Neisseria gonorrhoeae PID332] Length = 194 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ++ + I NI AT+ A+ AV L P IDG IPE L A AV+KGDS + Sbjct: 66 STPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M ++ P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|194099971|ref|YP_002003110.1| ribonuclease HII [Neisseria gonorrhoeae NCCP11945] gi|254494667|ref|ZP_05107838.1| ribonuclease HII [Neisseria gonorrhoeae 1291] gi|268593829|ref|ZP_06127996.1| ribonuclease HII [Neisseria gonorrhoeae 35/02] gi|268597728|ref|ZP_06131895.1| ribonuclease HII [Neisseria gonorrhoeae FA19] gi|268599975|ref|ZP_06134142.1| ribonuclease HII [Neisseria gonorrhoeae MS11] gi|268602313|ref|ZP_06136480.1| ribonuclease HII [Neisseria gonorrhoeae PID18] gi|268604575|ref|ZP_06138742.1| ribonuclease HII [Neisseria gonorrhoeae PID1] gi|268683300|ref|ZP_06150162.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679] gi|268687461|ref|ZP_06154323.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035] gi|291042833|ref|ZP_06568574.1| ribonuclease HII [Neisseria gonorrhoeae DGI2] gi|193935261|gb|ACF31085.1| RnhB [Neisseria gonorrhoeae NCCP11945] gi|226513707|gb|EEH63052.1| ribonuclease HII [Neisseria gonorrhoeae 1291] gi|268547218|gb|EEZ42636.1| ribonuclease HII [Neisseria gonorrhoeae 35/02] gi|268551516|gb|EEZ46535.1| ribonuclease HII [Neisseria gonorrhoeae FA19] gi|268584106|gb|EEZ48782.1| ribonuclease HII [Neisseria gonorrhoeae MS11] gi|268586444|gb|EEZ51120.1| ribonuclease HII [Neisseria gonorrhoeae PID18] gi|268588706|gb|EEZ53382.1| ribonuclease HII [Neisseria gonorrhoeae PID1] gi|268623584|gb|EEZ55984.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679] gi|268627745|gb|EEZ60145.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035] gi|291013267|gb|EFE05233.1| ribonuclease HII [Neisseria gonorrhoeae DGI2] gi|317165422|gb|ADV08963.1| ribonuclease HII [Neisseria gonorrhoeae TCDC-NG08107] Length = 212 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I A+ +++ Sbjct: 24 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAVAWHVAA 83 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ++ + I NI AT+ A+ AV L P IDG IPE L A AV+KGDS + Sbjct: 84 STPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 143 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M ++ P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 144 ISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 203 Query: 206 NLS 208 NL Sbjct: 204 NLL 206 >gi|59802108|ref|YP_208820.1| hypothetical protein NGO1789 [Neisseria gonorrhoeae FA 1090] gi|239997979|ref|ZP_04717903.1| ribonuclease HII [Neisseria gonorrhoeae 35/02] gi|240015043|ref|ZP_04721956.1| ribonuclease HII [Neisseria gonorrhoeae DGI18] gi|240017491|ref|ZP_04724031.1| ribonuclease HII [Neisseria gonorrhoeae FA6140] gi|240081632|ref|ZP_04726175.1| ribonuclease HII [Neisseria gonorrhoeae FA19] gi|240113913|ref|ZP_04728403.1| ribonuclease HII [Neisseria gonorrhoeae MS11] gi|240116645|ref|ZP_04730707.1| ribonuclease HII [Neisseria gonorrhoeae PID18] gi|240118868|ref|ZP_04732930.1| ribonuclease HII [Neisseria gonorrhoeae PID1] gi|240122111|ref|ZP_04735073.1| ribonuclease HII [Neisseria gonorrhoeae PID24-1] gi|240124723|ref|ZP_04737609.1| ribonuclease HII [Neisseria gonorrhoeae SK-92-679] gi|240129082|ref|ZP_04741743.1| ribonuclease HII [Neisseria gonorrhoeae SK-93-1035] gi|260439594|ref|ZP_05793410.1| ribonuclease HII [Neisseria gonorrhoeae DGI2] gi|73917827|sp|Q5F5X9|RNH2_NEIG1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|59719003|gb|AAW90408.1| putative ribonuclease HII [Neisseria gonorrhoeae FA 1090] Length = 194 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I A+ +++ Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAVAWHVAA 65 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ++ + I NI AT+ A+ AV L P IDG IPE L A AV+KGDS + Sbjct: 66 STPEEIASLNILHATMLAMKRAVYGLAARPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M ++ P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRRPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|153825313|ref|ZP_01977980.1| ribonuclease HII [Vibrio cholerae MZO-2] gi|183179455|ref|ZP_02957666.1| ribonuclease HII [Vibrio cholerae MZO-3] gi|229513888|ref|ZP_04403350.1| ribonuclease HII [Vibrio cholerae TMA 21] gi|297580889|ref|ZP_06942814.1| ribonuclease HII [Vibrio cholerae RC385] gi|149740997|gb|EDM55066.1| ribonuclease HII [Vibrio cholerae MZO-2] gi|183012866|gb|EDT88166.1| ribonuclease HII [Vibrio cholerae MZO-3] gi|229349069|gb|EEO14026.1| ribonuclease HII [Vibrio cholerae TMA 21] gi|297534715|gb|EFH73551.1| ribonuclease HII [Vibrio cholerae RC385] Length = 206 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 119/202 (58%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPKLPMA-AQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|302386482|ref|YP_003822304.1| Ribonuclease H [Clostridium saccharolyticum WM1] gi|302197110|gb|ADL04681.1| Ribonuclease H [Clostridium saccharolyticum WM1] Length = 213 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 116/195 (59%), Gaps = 6/195 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E ++ V GIDE GRG LAGPVV A+IL + +NDSKK+S K+RE L+E Sbjct: 22 YERQYEDQ--VLVCGIDEAGRGPLAGPVVAGAVILPRDCEILFLNDSKKLSEKRREALFE 79 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A ++ ID+ NI +AT +A+ AV L++ P L D +IP + Sbjct: 80 EIMEKASAFAVGVVGADRIDEINILQATYEAMRLAVAKLEIEPNVFLNDAVTIP-GIAAS 138 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD S+SIAAASI+AKVTRD +M K +P+YGF H GY TA H + +KE G Sbjct: 139 QVPIIKGDGKSVSIAAASIMAKVTRDHMMEEYDKLFPEYGFSRHKGYGTAVHMKALKEFG 198 Query: 193 PSCIHRLTFRPLRNL 207 P IHR +F ++N+ Sbjct: 199 PCPIHRRSF--IKNI 211 >gi|262166323|ref|ZP_06034060.1| ribonuclease HII [Vibrio mimicus VM223] gi|262026039|gb|EEY44707.1| ribonuclease HII [Vibrio mimicus VM223] Length = 206 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 116/202 (57%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A S+ S Q ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 121 VPTLPM-DAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|291527941|emb|CBK93527.1| Ribonuclease HII [Eubacterium rectale M104/1] Length = 253 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 118/194 (60%), Gaps = 6/194 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV A+IL + INDSKK++ KR+ELY+ Sbjct: 63 YEREYAS--YAHICGIDEVGRGPLAGPVVACAVILPKDCDILYINDSKKLTAAKRDELYD 120 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + I ASH+ ID+ NI +AT +A+ A++ L P L D + + + Sbjct: 121 VIMEKAVSVGIGMASHERIDEINILQATYEAMRQAIKKLDPAPDLTLNDAVT-IPGVDIK 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SI AASI+AKVTRDR+M + YP YGF S+ GY +A+H + +KE G Sbjct: 180 QVPIIKGDAKSISIGAASIVAKVTRDRMMVEYDRIYPGYGFASNKGYGSAEHIKALKEIG 239 Query: 193 PSCIHRLTFRPLRN 206 PS IHR +F + N Sbjct: 240 PSQIHRASF--IHN 251 >gi|314936593|ref|ZP_07843940.1| ribonuclease HII [Staphylococcus hominis subsp. hominis C80] gi|313655212|gb|EFS18957.1| ribonuclease HII [Staphylococcus hominis subsp. hominis C80] Length = 255 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 116/196 (59%), Gaps = 4/196 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + N + GIDEVGRG LAGPVV A+IL+ + G++DSKK+S KR+ L Sbjct: 61 YENKILKDNPNALICGIDEVGRGPLAGPVVACAVILNKEHQYLGLDDSKKVSATKRKILN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E++ + AS + ID+ NI+ AT A+ A+ L+ P LID ++ D Sbjct: 121 EQLKEGVYDYAYGIASAEEIDEFNIYNATKLAMERAINQLKQQPNHLLID--AMTLDNAM 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AK RD LM KYP Y F+ +VGY T H Q +K+ Sbjct: 179 PQTSIIKGDAKSVSIAAASIMAKEYRDGLMAEVALKYPGYDFEKNVGYGTKSHLQGLKQL 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + HR TF P++++ Sbjct: 239 GITPYHRKTFEPVKSM 254 >gi|256847171|ref|ZP_05552617.1| ribonuclease HII [Lactobacillus coleohominis 101-4-CHN] gi|256715835|gb|EEU30810.1| ribonuclease HII [Lactobacillus coleohominis 101-4-CHN] Length = 259 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 81/194 (41%), Positives = 117/194 (60%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E + + VAG+DEVGRG LAGPVV A+ILD + DSK +S ++RE L Sbjct: 61 FKYERALWQAGNQYVAGMDEVGRGPLAGPVVTCAVILDDRFDLVEVTDSKMLSRRERERL 120 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A +SI+ S ID+ NI++AT DA+ AV L+ P ++D ++P L Sbjct: 121 YLRIVDEAVEVSIAVNSPAVIDQLNIYRATQDAMIRAVHELRHQPSHLIVD--AVPLSLS 178 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD S+S+AAASI+AK RD LM + YP Y F++++GY T +H +++ Sbjct: 179 IPQTTLIKGDQKSISVAAASIVAKEYRDHLMADYARLYPGYDFENNMGYGTKQHLAGLEK 238 Query: 191 KGPSCIHRLTFRPL 204 G + IHR TF P+ Sbjct: 239 HGVTPIHRRTFAPV 252 >gi|42520908|ref|NP_966823.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034585|ref|ZP_01314549.1| hypothetical protein Wendoof_01000635 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|73917837|sp|Q73G60|RNH2_WOLPM RecName: Full=Ribonuclease HII; Short=RNase HII gi|42410649|gb|AAS14757.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila melanogaster] Length = 198 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 86/198 (43%), Positives = 122/198 (61%), Gaps = 6/198 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68 P F LE + +AG+DEVGRG LAGPV+ AA++ D N I GINDSKK++ + R Sbjct: 4 PDFTLENKLS----GVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCR 59 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LYEKITS A I AS + I+ +NI +AT ++ A+ +L + L+DG P + Sbjct: 60 QVLYEKITSVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGN-QPPE 118 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + Q +++ GD++S SIAAASI+AKVTRDRLM+ H K+P+Y + + GY T +H I Sbjct: 119 VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAI 178 Query: 189 KEKGPSCIHRLTFRPLRN 206 G + HR F P+ Sbjct: 179 GLYGITEHHRKNFAPISR 196 >gi|220934349|ref|YP_002513248.1| Ribonuclease H [Thioalkalivibrio sp. HL-EbGR7] gi|254808004|sp|B8GQ66|RNH2_THISH RecName: Full=Ribonuclease HII; Short=RNase HII gi|219995659|gb|ACL72261.1| Ribonuclease H [Thioalkalivibrio sp. HL-EbGR7] Length = 202 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 122/195 (62%), Gaps = 5/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +LEA + + VAG+DEVGRG LAGPVV AA+ILDP G+ DSKK+S +RE L Sbjct: 2 DLEAWL---GLPGVAGVDEVGRGPLAGPVVAAAVILDPARPIDGLKDSKKLSPARREALD 58 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + ++ + ID+ NI +A+L A+ AVE L P AL+DG P+ Sbjct: 59 VQIRERSLAFALGLCTPAEIDRINILQASLLAMQRAVEALSHRPEMALVDGNRCPKLTM- 117 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A AVIKGDS +I+AASIIAKV RDRLM +++P YG SH+GYPT H + ++ Sbjct: 118 TAHAVIKGDSRVPAISAASIIAKVHRDRLMLALDEQHPGYGLGSHMGYPTPVHLEALERL 177 Query: 192 GPSCIHRLTFRPLRN 206 GPS HRL+F P+R Sbjct: 178 GPSPCHRLSFAPVRR 192 >gi|238019255|ref|ZP_04599681.1| hypothetical protein VEIDISOL_01119 [Veillonella dispar ATCC 17748] gi|237863954|gb|EEP65244.1| hypothetical protein VEIDISOL_01119 [Veillonella dispar ATCC 17748] Length = 265 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 87/197 (44%), Positives = 129/197 (65%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ M+ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDQGMYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKRETL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++AT A+Y A+ L V + + D DL Sbjct: 123 YDIIMKEAVAVSCISYGPEKIDELNIYEATRQAMYEAIRTLSVPAEAVVADAMK-LPDLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ +YP YGF H GY T H++ +++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEYPGYGFGIHKGYYTELHKEAVEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|262170785|ref|ZP_06038463.1| ribonuclease HII [Vibrio mimicus MB-451] gi|261891861|gb|EEY37847.1| ribonuclease HII [Vibrio mimicus MB-451] Length = 206 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 89/202 (44%), Positives = 116/202 (57%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A S+ S + ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 121 VPTLPM-DAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|205373355|ref|ZP_03226159.1| ribonuclease HII [Bacillus coahuilensis m4-4] Length = 253 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 128/196 (65%), Gaps = 3/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + E + +AG+DEVGRG LAGPVV AA+IL + G++DSKK++ K+EE++ Sbjct: 58 QYEKKLWEGGIKRIAGVDEVGRGPLAGPVVAAAVILPQSFYYPGLDDSKKLTESKKEEMF 117 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I ++AI +S+S +H ID NI++AT A+ A+ L + P LID + Sbjct: 118 DYINATAISVSVSIINHDVIDTVNIYEATKLAMQQAINGLDLTPEYLLIDAMKLSMG--I 175 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++IKGDS S+SIAAASIIAKVTRDRLM+ YP Y F+ ++GY T +H + +K Sbjct: 176 EEESIIKGDSKSISIAAASIIAKVTRDRLMKEYATTYPHYAFERNMGYGTTEHLEGLKSV 235 Query: 192 GPSCIHRLTFRPLRNL 207 GPS IHR +F P++ L Sbjct: 236 GPSPIHRRSFAPIKEL 251 >gi|187931769|ref|YP_001891754.1| ribonuclease HII [Francisella tularensis subsp. mediasiatica FSC147] gi|238691569|sp|B2SGW7|RNH2_FRATM RecName: Full=Ribonuclease HII; Short=RNase HII gi|187712678|gb|ACD30975.1| ribonuclease HII [Francisella tularensis subsp. mediasiatica FSC147] Length = 187 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 78/182 (42%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A +I Sbjct: 2 IILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 62 VEINPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P Sbjct: 121 IEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKP 180 Query: 204 LR 205 ++ Sbjct: 181 VQ 182 >gi|220915421|ref|YP_002490725.1| Ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1] gi|219953275|gb|ACL63659.1| Ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1] Length = 283 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 115/195 (58%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 EA + E+ + VAG+DE G LAGPVV A +L + P GI+DSK++ +RE L Sbjct: 66 LRYEAELWERGLVRVAGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERL 125 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I +A +++ A + ID+ NI+ A + A+ AV+ L P L+D R +P DLP Sbjct: 126 AEDIKRNAVCWAVARADVEEIDRLNIYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLP 184 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++SL+IAAASI+AK RD LM +P YGF H GYPTA+H + + Sbjct: 185 FPQTPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFEALGR 244 Query: 191 KGPSCIHRLTFRPLR 205 G IHR +F P+R Sbjct: 245 LGACPIHRRSFTPVR 259 >gi|330445159|ref|ZP_08308811.1| ribonuclease HII family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489350|dbj|GAA03308.1| ribonuclease HII family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 203 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR L+++I A S+ Sbjct: 18 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEKKRNLLFDEIKEKALSWSLG 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID+ NI +AT+ A+ AV L + P LIDG +PE A AV+KGD Sbjct: 78 RCEADEIDELNILQATMVAMQRAVAGLHIQPDFVLIDGNKVPELPMA-AQAVVKGDLRVA 136 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKVTRDR M +YP YGF H GYPT H + +++ G HR +F+P+ Sbjct: 137 EISAASIIAKVTRDREMEALDAEYPQYGFAKHKGYPTKAHFEALEQHGAIEQHRKSFKPV 196 Query: 205 RNLS 208 + + Sbjct: 197 KRIL 200 >gi|146308060|ref|YP_001188525.1| ribonuclease HII [Pseudomonas mendocina ymp] gi|166226640|sp|A4XWS7|RNH2_PSEMY RecName: Full=Ribonuclease HII; Short=RNase HII gi|145576261|gb|ABP85793.1| Ribonuclease H [Pseudomonas mendocina ymp] Length = 208 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 115/186 (61%), Gaps = 2/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE L+++I A Sbjct: 12 ELVAGVDEVGRGPLCGAVVTAAVILDPLRPIIGLNDSKKLTEARREVLFDEIREKALAWC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L V P+ ALIDG P + V+KGDS Sbjct: 72 IARAEVEEIDRLNILHATMLAMQRAVEGLSVTPKLALIDGNRCPRLT-VPSAPVVKGDSR 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M + YP YG H GYPT H + ++ GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMLEMDRLYPGYGIAGHKGYPTPVHLEALQRLGPTPIHRRSFA 190 Query: 203 PLRNLS 208 P+R L Sbjct: 191 PVRALL 196 >gi|226313196|ref|YP_002773090.1| ribonuclease HII [Brevibacillus brevis NBRC 100599] gi|226096144|dbj|BAH44586.1| ribonuclease HII [Brevibacillus brevis NBRC 100599] Length = 258 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 73/192 (38%), Positives = 93/192 (48%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +K + GIDEVGRG LAGPVV A+ L + G+NDSKKI RE E Sbjct: 64 YEKAMFDKGHQYIFGIDEVGRGPLAGPVVACAVCLPKDFYLPGLNDSKKIPVSTREAFCE 123 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A+ A I L+ + C+ Sbjct: 124 IIQRDALAVGIGIVDAARIDAINILAATKEAMKLAIQQASIAPDVLLIDAVQLTGMNCEQ 183 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +I GD+ S+SIAAASI+AKVTRDRLM ++YP YGFD H GY T +H I GP Sbjct: 184 VPIIGGDAKSVSIAAASIVAKVTRDRLMAQYAEEYPAYGFDKHAGYGTPEHLAAISRFGP 243 Query: 194 SCIHRLTFRPLR 205 + IHR TF ++ Sbjct: 244 TPIHRKTFTGVK 255 >gi|225389108|ref|ZP_03758832.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme DSM 15981] gi|225044826|gb|EEG55072.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme DSM 15981] Length = 217 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 84/196 (42%), Positives = 111/196 (56%), Gaps = 6/196 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + GIDE GRG LAGPV A+IL + +NDSKK+S K+REEL+ Sbjct: 22 EYENTYAA--CAMICGIDEAGRGPLAGPVAAGAVILPKDCTLLHLNDSKKLSEKRREELF 79 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ + + ID+ NI +AT +A+ A+ L V P L D + Sbjct: 80 VQIKEQAVAWCVGIVGPERIDEINILQATYEAMRQAIAGLGVKPDILLNDAV-EIPGVDI 138 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKVTRD +M + +PDY F H GY TA H Q IKE Sbjct: 139 MQVPIIKGDAKSVSIAAASILAKVTRDHMMAEYDQLFPDYSFAKHKGYGTAAHIQAIKEL 198 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR +F +RN+ Sbjct: 199 GPCPIHRRSF--IRNI 212 >gi|186476082|ref|YP_001857552.1| ribonuclease HII [Burkholderia phymatum STM815] gi|184192541|gb|ACC70506.1| Ribonuclease H [Burkholderia phymatum STM815] Length = 249 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 88/185 (47%), Positives = 118/185 (63%), Gaps = 3/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYEKITSSA-II 81 V G+DE GRG LAGPVV AA+ILDP G+ DSK ++ KKR+ELYEKI A Sbjct: 31 DVVCGVDEAGRGPLAGPVVAAAVILDPAKPRIRGLTDSKVLTAKKRDELYEKIIERALAY 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++SAS + ID NI AT+ A+ AVE L+V P A IDG P ++ A++ GD Sbjct: 91 CVASASVEEIDSLNILHATMLAMKRAVEGLRVTPTLAKIDGNRCPSLS-IRSEAIVSGDL 149 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + I+AASI+AKVTRDR++ H+ +P YGFD+H GY T +H ++E GP HR +F Sbjct: 150 LVPCISAASILAKVTRDRMLLELHRMFPVYGFDAHAGYGTPQHLTALREHGPCEHHRRSF 209 Query: 202 RPLRN 206 P+R+ Sbjct: 210 APVRD 214 >gi|30249669|ref|NP_841739.1| ribonuclease HII and HIII [Nitrosomonas europaea ATCC 19718] gi|39932358|sp|Q82U06|RNH2_NITEU RecName: Full=Ribonuclease HII; Short=RNase HII gi|30180706|emb|CAD85618.1| Ribonuclease HII and HIII [Nitrosomonas europaea ATCC 19718] Length = 217 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 78/187 (41%), Positives = 114/187 (60%), Gaps = 1/187 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 ++ + G+DE GRG LAGPV A ++LDP ++ G+ DSK++S KKR L ++I Sbjct: 12 YAQDGKVIYGVDEAGRGPLAGPVYAACVVLDPADVIEGLADSKQLSEKKRISLADQIKQR 71 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A +I+SAS + ID+ NI +A+L A+ AV +L+ I + ++ + L C+ VI Sbjct: 72 ARAWAIASASVEEIDRLNILQASLLAMQRAVVSLRPISNALVLVDGNHAPRLDCEVQTVI 131 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 +GDS+ I+AASI+AK RD M H+ YP YGFD H GYPT H + I+ G + IH Sbjct: 132 RGDSLVAEISAASILAKTARDIEMLRLHEAYPVYGFDRHKGYPTKAHLEAIRLHGITDIH 191 Query: 198 RLTFRPL 204 R +F P Sbjct: 192 RRSFAPC 198 >gi|307729345|ref|YP_003906569.1| Ribonuclease H [Burkholderia sp. CCGE1003] gi|307583880|gb|ADN57278.1| Ribonuclease H [Burkholderia sp. CCGE1003] Length = 271 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 119/184 (64%), Gaps = 3/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSA-II 81 V G+DE GRG LAGPVV AA+I DP+ + G++DSK ++ KKR+ELYEKI A Sbjct: 44 DIVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKALTAKKRDELYEKIVDRALAY 103 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I+SA+ + ID NI AT+ A+ AVE L V P +DG P ++ AVI GD+ Sbjct: 104 CIASATVEEIDSLNILHATMLAMKRAVEGLSVTPTLVKVDGNRCPTLS-VRSEAVIGGDA 162 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + SI+AASI+AKVTRDR++ H+ YP YGF++H GY T +H ++E GP HR +F Sbjct: 163 LVKSISAASILAKVTRDRMLLELHQTYPMYGFNAHAGYGTPQHLAALREHGPCEHHRRSF 222 Query: 202 RPLR 205 P+R Sbjct: 223 APVR 226 >gi|270290222|ref|ZP_06196447.1| ribonuclease HII [Pediococcus acidilactici 7_4] gi|270281003|gb|EFA26836.1| ribonuclease HII [Pediococcus acidilactici 7_4] Length = 255 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 92/194 (47%), Positives = 122/194 (62%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F LE + + VAGIDEVGRG LAGPVV AA++LD + +NDSK++S K RE L Sbjct: 58 FSLENELWQSGKQFVAGIDEVGRGCLAGPVVTAAVVLDSHFDLVEVNDSKQLSLKLRESL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I S A+ + I S+Q ID+ I AT A+ A+ +L V P LID ++ Sbjct: 118 YAQILSEAVSVGIGVRSNQQIDQMGILNATKAAMNDAISHLNVTPEHLLID--AVQVPTS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGD+ S+SIAAASI+AKV RD LMR +K YP YGFD +VGY T +H + +KE Sbjct: 176 IPKTVMYKGDAKSISIAAASIVAKVYRDHLMRSYNKIYPGYGFDQNVGYGTKQHLEGLKE 235 Query: 191 KGPSCIHRLTFRPL 204 G + +HRLTF P+ Sbjct: 236 LGITPLHRLTFEPV 249 >gi|70726670|ref|YP_253584.1| ribonuclease HII [Staphylococcus haemolyticus JCSC1435] gi|97189319|sp|Q4L5U7|RNH2_STAHJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|68447394|dbj|BAE04978.1| ribonuclease HII [Staphylococcus haemolyticus JCSC1435] Length = 255 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 76/197 (38%), Positives = 115/197 (58%), Gaps = 4/197 (2%) Query: 14 LEAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E+ + N + GIDEVGRG LAGPVV A+IL+ + G++DSKK++ KR+ L Sbjct: 61 FESELLNNNPQALICGIDEVGRGPLAGPVVACAVILNEGHRYLGLDDSKKVTASKRQILN 120 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +K+ + AS + ID+ NI+ AT A+ A+ L P LID ++ D Sbjct: 121 KKLKDGVLEYAYGLASPEEIDELNIYNATQVAMNRALSQLVNRPDHLLID--AMSLDTTI 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AK RD LM+ +YP Y F+ +VGY T H + + Sbjct: 179 PQTSIIKGDAKSVSIAAASIMAKEYRDDLMKEIADEYPGYEFEKNVGYGTKAHLDGLNKL 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G + HR +F P+++++ Sbjct: 239 GITPYHRKSFEPIKSMT 255 >gi|225630956|ref|YP_002727747.1| ribonuclease HII [Wolbachia sp. wRi] gi|254808008|sp|C0R4W4|RNH2_WOLWR RecName: Full=Ribonuclease HII; Short=RNase HII gi|225592937|gb|ACN95956.1| ribonuclease HII [Wolbachia sp. wRi] Length = 198 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 85/198 (42%), Positives = 121/198 (61%), Gaps = 6/198 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKR 68 P F LE + +AG+DEVGRG LAGPV+ AA++ D N I GINDSKK++ + R Sbjct: 4 PDFTLENKLS----GVIAGVDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCR 59 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + LYEKI S A I AS + I+ +NI +AT ++ A+ +L + L+DG P + Sbjct: 60 QVLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYVLVDGN-QPPE 118 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + Q +++ GD++S SIAAASI+AKVTRDRLM+ H K+P+Y + + GY T +H I Sbjct: 119 VKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAI 178 Query: 189 KEKGPSCIHRLTFRPLRN 206 G + HR F P+ Sbjct: 179 GLYGITEHHRRNFAPISR 196 >gi|238897797|ref|YP_002923476.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259494067|sp|C4K435|RNH2_HAMD5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|229465554|gb|ACQ67328.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 200 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 92/189 (48%), Positives = 117/189 (61%), Gaps = 4/189 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG LAGPVV AA+ILDP N G+ DSK +S KKR LYE+IT A S Sbjct: 11 QSIAGVDEVGRGPLAGPVVTAAVILDPKNPIIGLADSKTLSKKKRMALYEEITHKALAWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI ATL A+ AV L + LIDG I L + +++KGDS Sbjct: 71 LGRAESKEIDEINIFHATLLAMQRAVNALGIKTDHVLIDG-HICPILSIPSSSIVKGDSK 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M K +P YGF H GYPTA H + + GP+ HR +FR Sbjct: 130 VPEISAASILAKVTRDREMEALDKVFPGYGFAQHKGYPTAFHLEKLALLGPTEQHRRSFR 189 Query: 203 PLRN--LSV 209 P+R +S+ Sbjct: 190 PVRRALISL 198 >gi|91218354|ref|ZP_01255298.1| ribonuclease HII [Psychroflexus torquis ATCC 700755] gi|91183492|gb|EAS69891.1| ribonuclease HII [Psychroflexus torquis ATCC 700755] Length = 197 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 99/177 (55%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA+IL + + DSK +S KRE L + S++ I+ Sbjct: 13 CGTDEAGRGCLAGPVTAAAVILPKDFKNELLTDSKLLSSSKREFLEVILKESSVSFGIAH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI A++ A++ +++ L P L+DG +IKGDS LS Sbjct: 73 IMMETIDEINILNASIKAMHASIQQLTPDPELILVDGNRFHTYPNIPHQCIIKGDSKFLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI AK RD M+ K++P YG+ + GYPT H++ I+E G + HR +F+ Sbjct: 133 IAAASIFAKTARDAYMKTIDKEFPMYGWAQNKGYPTKAHRKAIREYGITKYHRQSFK 189 >gi|56708338|ref|YP_170234.1| ribonuclease HII [Francisella tularensis subsp. tularensis SCHU S4] gi|110670809|ref|YP_667366.1| ribonuclease HII [Francisella tularensis subsp. tularensis FSC198] gi|134301623|ref|YP_001121591.1| ribonuclease HII [Francisella tularensis subsp. tularensis WY96-3418] gi|224457462|ref|ZP_03665935.1| ribonuclease HII [Francisella tularensis subsp. tularensis MA00-2987] gi|254369606|ref|ZP_04985617.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022] gi|254370960|ref|ZP_04986964.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033] gi|254875160|ref|ZP_05247870.1| ribonuclease HII [Francisella tularensis subsp. tularensis MA00-2987] gi|81597296|sp|Q5NFF8|RNH2_FRATT RecName: Full=Ribonuclease HII; Short=RNase HII gi|123169324|sp|Q14GW0|RNH2_FRAT1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225188|sp|A4IX19|RNH2_FRATW RecName: Full=Ribonuclease HII; Short=RNase HII gi|56604830|emb|CAG45911.1| Ribonuclease HII [Francisella tularensis subsp. tularensis SCHU S4] gi|110321142|emb|CAL09294.1| Ribonuclease HII [Francisella tularensis subsp. tularensis FSC198] gi|134049400|gb|ABO46471.1| ribonuclease HII [Francisella tularensis subsp. tularensis WY96-3418] gi|151569202|gb|EDN34856.1| ribonuclease H [Francisella tularensis subsp. tularensis FSC033] gi|157122560|gb|EDO66695.1| ribonuclease H [Francisella tularensis subsp. holarctica FSC022] gi|254841159|gb|EET19595.1| ribonuclease HII [Francisella tularensis subsp. tularensis MA00-2987] gi|282159575|gb|ADA78966.1| ribonuclease HII [Francisella tularensis subsp. tularensis NE061598] Length = 187 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A +I Sbjct: 2 IILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 62 VEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P Sbjct: 121 IEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKP 180 Query: 204 LR 205 ++ Sbjct: 181 VQ 182 >gi|258627364|ref|ZP_05722148.1| ribonuclease HII [Vibrio mimicus VM603] gi|258580402|gb|EEW05367.1| ribonuclease HII [Vibrio mimicus VM603] Length = 206 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 89/202 (44%), Positives = 116/202 (57%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRAIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A S+ S + ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 121 VPTLPM-DAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|304384964|ref|ZP_07367310.1| ribonuclease HII [Pediococcus acidilactici DSM 20284] gi|304329158|gb|EFL96378.1| ribonuclease HII [Pediococcus acidilactici DSM 20284] Length = 255 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 92/194 (47%), Positives = 122/194 (62%), Gaps = 3/194 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F LE + + VAGIDEVGRG LAGPVV AA++LD + +NDSK++S K RE L Sbjct: 58 FSLENELWQSGKQFVAGIDEVGRGCLAGPVVTAAVVLDDHFDLVEVNDSKQLSLKLRESL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I S A+ + I S+Q ID+ I AT A+ A+ +L V P LID ++ Sbjct: 118 YAQILSEAVSVGIGVRSNQQIDQMGILNATKAAMNDAISHLNVTPEHLLID--AVQVPTS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGD+ S+SIAAASI+AKV RD LMR +K YP YGFD +VGY T +H + +KE Sbjct: 176 IPKTVMYKGDAKSISIAAASIVAKVYRDHLMRSYNKVYPGYGFDQNVGYGTKQHLEGLKE 235 Query: 191 KGPSCIHRLTFRPL 204 G + +HRLTF P+ Sbjct: 236 LGVTPLHRLTFEPV 249 >gi|327398743|ref|YP_004339612.1| Ribonuclease H [Hippea maritima DSM 10411] gi|327181372|gb|AEA33553.1| Ribonuclease H [Hippea maritima DSM 10411] Length = 382 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 84/181 (46%), Positives = 111/181 (61%), Gaps = 2/181 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISISS 85 AG+DE GRG AGPVV A +IL+ + G I+DSKK+S KKREELY I ++I I Sbjct: 5 AGVDEAGRGPWAGPVVAACVILNKDIPHLGDIDDSKKLSPKKREELYRVIKENSIYGIGV 64 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S++ IDK I KA AI A++ + P LIDG DLP + +I+GD+ S Sbjct: 65 VSNKEIDKLGIVKAVELAIKRAIDVMDEKPSFLLIDG-KDRFDLPIKYKTIIEGDAKVKS 123 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AKV RDR M + YP YGF+ H GY T H +++ GP IHR +F+P++ Sbjct: 124 IAAASILAKVWRDRYMELVADIYPKYGFEKHKGYGTKAHTLALEKYGPCQIHRFSFKPIQ 183 Query: 206 N 206 Sbjct: 184 R 184 >gi|325661112|ref|ZP_08149739.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472619|gb|EGC75830.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium 4_1_37FAA] Length = 254 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 89/196 (45%), Positives = 118/196 (60%), Gaps = 6/196 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E R+ + GIDEVGRG LAGPVV A+IL ++ +NDSKK++ K+REELY Sbjct: 61 SYENKYRDAAF--ICGIDEVGRGPLAGPVVAGAVILPKDSQILYLNDSKKLTEKRREELY 118 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-P 130 E I AI + I S ID+ NI +AT +A+ AV L V P L D +IP Sbjct: 119 EVIMREAIAVGIGIVSPARIDEINILQATYEAMREAVGKLCVEPNVLLNDAVTIPMIPPH 178 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S+SIAAASI+AKVTRDRLM + P YGF S+ GY +++H +K+ Sbjct: 179 IVQVPIIKGDAKSVSIAAASIVAKVTRDRLMTEYEEVLPGYGFASNKGYGSSEHIAALKK 238 Query: 191 KGPSCIHRLTFRPLRN 206 GP+ IHR +F + N Sbjct: 239 YGPTPIHRRSF--IHN 252 >gi|323489566|ref|ZP_08094793.1| ribonuclease HII [Planococcus donghaensis MPA1U2] gi|323396697|gb|EGA89516.1| ribonuclease HII [Planococcus donghaensis MPA1U2] Length = 259 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 82/199 (41%), Positives = 119/199 (59%), Gaps = 4/199 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70 + R++++ VAGIDE GRG LAGPVV AA+IL + G++DSK++S KR+E Sbjct: 57 LAFDDSFRKESVDLVAGIDEAGRGPLAGPVVTAAVILPEDCSSLIGLDDSKQLSKAKRDE 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I AI ++ S + ID+ NI++AT ++ A + P ++ ++ +L Sbjct: 117 LAITIKKFAISYAVHVQSPEEIDRLNIYQATKSSMTEAARA--LTPAPDIVLADAMMLEL 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P ++IKGD+ SLSIAAASI+AK RD LM +YP YGF+ H GY T +H ++ Sbjct: 175 PMTCESIIKGDAKSLSIAAASILAKTGRDALMTEYAVQYPQYGFEKHAGYGTKEHVAALQ 234 Query: 190 EKGPSCIHRLTFRPLRNLS 208 E GP IHR TF P++ L Sbjct: 235 EYGPCEIHRKTFEPIKTLL 253 >gi|284102975|ref|ZP_06386058.1| Ribonuclease HII [Candidatus Poribacteria sp. WGA-A3] gi|283830303|gb|EFC34542.1| Ribonuclease HII [Candidatus Poribacteria sp. WGA-A3] Length = 216 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 86/198 (43%), Positives = 119/198 (60%), Gaps = 2/198 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +LE R + VAG+DE GRG LAGPVV AA+I+ ++DSKK+S +RE Sbjct: 13 PTCDLEEEARTRGYRRVAGLDEAGRGPLAGPVVGAAVIVPRRFSLRSLDDSKKVSPTERE 72 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+ IT SA I AS ID N+ +AT A A+ L++ P L+DG + D Sbjct: 73 ALFSVITESATAWGIGVASEAEIDSLNVLRATWLAWQRAINQLRIPPDFLLVDG-HLGAD 131 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + +VI GD +S SIAAASI+AKV RDR+M H++ P Y F H GYPT +H +++ Sbjct: 132 VFIPHRSVIHGDRLSSSIAAASILAKVFRDRIMCEYHERDPRYRFHIHKGYPTPEHLRLL 191 Query: 189 KEKGPSCIHRLTFRPLRN 206 ++ GPS +HR +F P+R Sbjct: 192 RQFGPSPVHRHSFGPVRR 209 >gi|238926779|ref|ZP_04658539.1| ribonuclease HII [Selenomonas flueggei ATCC 43531] gi|238885311|gb|EEQ48949.1| ribonuclease HII [Selenomonas flueggei ATCC 43531] Length = 259 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 91/199 (45%), Positives = 121/199 (60%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E E+ VAGIDE GRG LAGPV VAA+IL + +NDSKK+S K REEL Sbjct: 52 YSYERCAAERGNCIVAGIDEAGRGPLAGPVAVAAVILPQEYLLLRLNDSKKLSEKVREEL 111 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE I S A+ + + ID+ NI +AT +Y AV L P+ LID ++P Sbjct: 112 YETIVSDAVSYHVELIDAETIDRMNILEATRRGMYDAVAALLPTPQEVLIDAVALPRLRM 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +++KGD+ S SIAAASI+AKVTRDRLM K+YP YGF H GY T +H + I++ Sbjct: 172 ASQ-SIVKGDAKSASIAAASILAKVTRDRLMLTYDKEYPVYGFAQHKGYGTREHIEAIRK 230 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G +HR TF P+R++ + Sbjct: 231 YGICPLHRKTFEPIRSMII 249 >gi|225009987|ref|ZP_03700459.1| Ribonuclease H [Flavobacteria bacterium MS024-3C] gi|225005466|gb|EEG43416.1| Ribonuclease H [Flavobacteria bacterium MS024-3C] Length = 193 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 71/184 (38%), Positives = 107/184 (58%), Gaps = 1/184 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG DE GRG L+GPV AA+IL N ++DSKK+S K+R L I A+ + Sbjct: 10 LIAGTDEAGRGCLSGPVTAAAVILPKNFYHPMLDDSKKLSAKQRAILAPIIKQEAVSYGV 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S ID+ NI +A++ A++ ++ L+ IP ++DG L V+KGD Sbjct: 70 SHVFPHVIDRINILQASILAMHKSIAKLKTIPEKIIVDGNKFNPYLSIPHETVVKGDGKF 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAAS++AK RD M H+K+P Y ++ ++GYPTAKH+ I G + HR TF+ Sbjct: 130 YAIAAASVLAKTARDEYMMELHQKFPLYQWNKNMGYPTAKHRNAIATYGITPHHRKTFKG 189 Query: 204 LRNL 207 +++L Sbjct: 190 VKDL 193 >gi|188533051|ref|YP_001906848.1| Ribonuclease HII [Erwinia tasmaniensis Et1/99] gi|238691983|sp|B2VHY0|RNH2_ERWT9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|188028093|emb|CAO95950.1| Ribonuclease HII [Erwinia tasmaniensis Et1/99] Length = 207 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+R LY++I A S Sbjct: 10 RLIAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLGDSKKLSEKRRLALYDEIKDKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P + AV+KGDS+ Sbjct: 70 LGRAEPEEIDQLNILHATMLAMQRAVAGLHLSPDFVLIDGNRCPALAM-PSRAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +YP YGF H GYPTA H + + + G + HR +F Sbjct: 129 VPEISAASILAKVTRDREMCELDLQYPQYGFARHKGYPTAVHVEKLAQFGATPQHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|221066099|ref|ZP_03542204.1| Ribonuclease H [Comamonas testosteroni KF-1] gi|220711122|gb|EED66490.1| Ribonuclease H [Comamonas testosteroni KF-1] Length = 243 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPVV AA+ILD G+NDSKK++ +RE LY++I + A Sbjct: 23 GLVAGVDEAGRGPLAGPVVAAAVILDDMKPIAGLNDSKKLTANRREVLYDEIRAKALCFC 82 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS Q ID+ NI KATL A+ AV L++ P L+DG +P+ QA A++KGDS+ Sbjct: 83 IAQASVQEIDEINILKATLLAMRRAVMGLRLKPVLVLVDGNQLPQID-VQAEAIVKGDSL 141 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR +YP YGF H GY TA H Q ++ G + HR +F Sbjct: 142 VQAISAASILAKVTRDRWCERLDAQYPQYGFAGHKGYGTAAHLQALRAHGATAEHRRSFA 201 Query: 203 PL 204 P+ Sbjct: 202 PV 203 >gi|330872713|gb|EGH06862.1| ribonuclease HII [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 217 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP FG+NDSKK++ KRE+L+ +I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPARPIFGLNDSKKLTEAKREKLFVEIQEKALCWF 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ + V+KGDS Sbjct: 72 IARAEVEEIDQLNILHATMLAMKRAVEGLNITPKLALIDGNRCPQLS-VPSAPVVKGDSK 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMAALELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFG 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|325579117|ref|ZP_08149073.1| ribonuclease HII [Haemophilus parainfluenzae ATCC 33392] gi|325159352|gb|EGC71486.1| ribonuclease HII [Haemophilus parainfluenzae ATCC 33392] Length = 200 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 83/189 (43%), Positives = 113/189 (59%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + VAG+DEVGRG L G VV AA+ILDPN G+ DSKK+S KKR L +I Sbjct: 6 YPEGYQLVAGVDEVGRGPLVGAVVTAAVILDPNKPIAGLADSKKLSEKKRLALAAEIKEK 65 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI A++ A+ AV+ L++ P L+DG IP +L A AV+ Sbjct: 66 ALAWAMGRAEPAEIDELNILHASMLAMERAVKALKIQPHFVLVDGNRIPPNLGFPAQAVV 125 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ I+AASI+AKV RD+ M K +P+Y F H GYPT H + + E GP + Sbjct: 126 KGDSLVAEISAASILAKVARDQEMEELDKNHPEYAFAQHKGYPTKLHLEKLAELGPLPEY 185 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 186 RRSFSPVKK 194 >gi|254373232|ref|ZP_04988721.1| ribonuclease HII [Francisella tularensis subsp. novicida GA99-3549] gi|151570959|gb|EDN36613.1| ribonuclease HII [Francisella novicida GA99-3549] Length = 185 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A +I Sbjct: 2 IILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 62 VEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWNYNSEAIVKGDSKI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P Sbjct: 121 IEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKP 180 Query: 204 LR 205 ++ Sbjct: 181 IQ 182 >gi|254293355|ref|YP_003059378.1| ribonuclease H [Hirschia baltica ATCC 49814] gi|254041886|gb|ACT58681.1| Ribonuclease H [Hirschia baltica ATCC 49814] Length = 194 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 106/182 (58%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 + G+DE GRG AGPV A+IL+P N G+NDSKK+S KKR++L I A SI Sbjct: 6 LICGVDEAGRGPWAGPVCAGAVILNPLNPIAGLNDSKKLSEKKRDKLALLIKEYALCWSI 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS + ID+ NI +A A+ AV+ L + P ALIDG P C+ +I GD I Sbjct: 66 GWASPEEIDELNIRQANHLAMQRAVQGLSIAPDLALIDGNDAPPL-DCRTETLIGGDGIE 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AK RD M +YPDYGF H GY H +K GP IHR+TF+P Sbjct: 125 ACISAASILAKTARDAKMVEYDLQYPDYGFAKHKGYGVKAHSDALKRIGPCPIHRMTFKP 184 Query: 204 LR 205 +R Sbjct: 185 VR 186 >gi|28868754|ref|NP_791373.1| ribonuclease HII [Pseudomonas syringae pv. tomato str. DC3000] gi|213969132|ref|ZP_03397271.1| ribonuclease HII [Pseudomonas syringae pv. tomato T1] gi|301383973|ref|ZP_07232391.1| ribonuclease HII [Pseudomonas syringae pv. tomato Max13] gi|302064141|ref|ZP_07255682.1| ribonuclease HII [Pseudomonas syringae pv. tomato K40] gi|302134068|ref|ZP_07260058.1| ribonuclease HII [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999586|sp|Q886M9|RNH2_PSESM RecName: Full=Ribonuclease HII; Short=RNase HII gi|28851993|gb|AAO55068.1| ribonuclease HII [Pseudomonas syringae pv. tomato str. DC3000] gi|213926130|gb|EEB59686.1| ribonuclease HII [Pseudomonas syringae pv. tomato T1] gi|331016381|gb|EGH96437.1| ribonuclease HII [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 217 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE+L+ +I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPAKPILGLNDSKKLTEAKREKLFVEIQEKALCWF 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ + V+KGDS Sbjct: 72 IARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQLS-VPSAPVVKGDSK 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMAALELIYPGYGIAGHKGYPTPVHLEALARLGPTPIHRRSFG 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|163785164|ref|ZP_02179855.1| RNase HII [Hydrogenivirga sp. 128-5-R1-1] gi|159879566|gb|EDP73379.1| RNase HII [Hydrogenivirga sp. 128-5-R1-1] Length = 190 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 80/192 (41%), Positives = 105/192 (54%), Gaps = 5/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE+E + +K + GIDE GRG LAGPVV AA+I N F DSKK+S KKRE L Sbjct: 2 FEIEKSLYQKGFKKIVGIDEAGRGPLAGPVVSAAVIFPSNIDIFITKDSKKLSPKKREIL 61 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I A + I IDK NI+ AT A+ A+ L+ + D Sbjct: 62 FEEIKKKALAVGIGVVDSCEIDKVNIYNATKLAMKRALFTLKSDFDYIITDYVKFDPYPH 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 K D S+S+AAASIIAKV RD++M + YP FD H GYPT H++ IK+ Sbjct: 122 ISVK---KADEKSISVAAASIIAKVYRDKIMEYFSEIYPH-SFDKHKGYPTKLHKEEIKK 177 Query: 191 KGPSCIHRLTFR 202 G + IHR +F+ Sbjct: 178 FGITPIHRKSFK 189 >gi|258621010|ref|ZP_05716044.1| ribonuclease HII [Vibrio mimicus VM573] gi|258586398|gb|EEW11113.1| ribonuclease HII [Vibrio mimicus VM573] Length = 206 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 89/202 (44%), Positives = 116/202 (57%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A S+ S + ID+ NI +AT+ A+ AV L V P L+DG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPREIDELNIFQATMVAMQRAVAGLAVQPDLVLVDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P A AV+KGD I+AASIIAKV RD M K+YP +GF H GYPTA H Sbjct: 121 VPTLPT-DAQAVVKGDLRVAQISAASIIAKVIRDHEMEELDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|332665027|ref|YP_004447815.1| ribonuclease H [Haliscomenobacter hydrossis DSM 1100] gi|332333841|gb|AEE50942.1| Ribonuclease H [Haliscomenobacter hydrossis DSM 1100] Length = 199 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPV AA+IL + +NDSK+++ ++R EL I +SA +++ Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPKDFRHPLLNDSKQLTEQQRLELRCIIKASATCWAVAQ 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI A+ A++ A++ L+ P L+DG +IKGD I +S Sbjct: 73 VDPAEIDQVNILNASFLAMHRALDKLETPPELILVDGNRFTPYRNIAHRCIIKGDGIYMS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M + +P YG+ + GYPT H++ ++ G + HR +FR Sbjct: 133 IAAASILAKTYRDDYMADLAESHPQYGWSKNKGYPTKAHREALRHHGVTSHHRRSFR 189 >gi|332289941|ref|YP_004420793.1| ribonuclease HII [Gallibacterium anatis UMN179] gi|330432837|gb|AEC17896.1| ribonuclease HII [Gallibacterium anatis UMN179] Length = 197 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 89/186 (47%), Positives = 117/186 (62%), Gaps = 1/186 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 N +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S KKR+ L E+I A Sbjct: 8 NAKLIAGVDEVGRGPLVGAVVTAAVILDPERPITGLADSKKLSEKKRQLLAEEIKEKALA 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A ID+ NI +AT+ A+ AV+ L + P LIDG IP L A AV+KGD Sbjct: 68 WSLGRAEAAEIDRINILQATMLAMCRAVQGLHIQPDFVLIDGNRIPSALKIAAQAVVKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M + H+KYP YGFD H GYPT H + +++ G HR + Sbjct: 128 SLVAEISAASILAKVARDQEMLLLHQKYPQYGFDRHKGYPTKLHLEALEKYGILAEHRQS 187 Query: 201 FRPLRN 206 F P++ Sbjct: 188 FAPVKK 193 >gi|331002666|ref|ZP_08326181.1| ribonuclease HII [Lachnospiraceae oral taxon 107 str. F0167] gi|330407079|gb|EGG86583.1| ribonuclease HII [Lachnospiraceae oral taxon 107 str. F0167] Length = 214 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 118/190 (62%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E ++ +AG+DE GRG LAGPVV AA+IL + +NDSKK++ K+R+ L+ Sbjct: 21 EFENKY--SDLAYIAGLDEAGRGPLAGPVVAAAVILPKDIFLPFLNDSKKVTEKRRDVLF 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I +AI I AS+ ID+ NI +AT +A+ A+ L P L+D + Sbjct: 79 DEIKQNAIAYGIGIASNTLIDEINILQATYEAMREAINALSTRPDILLVDAI-HIPGIDI 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD+ S++IAAASI+AKVTRDRLM K YP+YGF S+ GY TA H +KE Sbjct: 138 RQVGIVKGDAKSVNIAAASILAKVTRDRLMAEYDKIYPEYGFASNKGYGTAAHIAALKEY 197 Query: 192 GPSCIHRLTF 201 GP IHR +F Sbjct: 198 GPCEIHRKSF 207 >gi|118497878|ref|YP_898928.1| ribonuclease HII [Francisella tularensis subsp. novicida U112] gi|194323851|ref|ZP_03057627.1| ribonuclease HII [Francisella tularensis subsp. novicida FTE] gi|166225187|sp|A0Q7F9|RNH2_FRATN RecName: Full=Ribonuclease HII; Short=RNase HII gi|118423784|gb|ABK90174.1| ribonuclease HII [Francisella novicida U112] gi|194322215|gb|EDX19697.1| ribonuclease HII [Francisella tularensis subsp. novicida FTE] Length = 185 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A +I Sbjct: 2 IILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S Q ID+ NI +ATL A++ NL+ L+DG +P + + A++KGDS Sbjct: 62 VEISPQQIDELNILQATLKAMHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P Sbjct: 121 IEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKP 180 Query: 204 LR 205 ++ Sbjct: 181 IQ 182 >gi|228474964|ref|ZP_04059692.1| ribonuclease HII [Staphylococcus hominis SK119] gi|228270949|gb|EEK12337.1| ribonuclease HII [Staphylococcus hominis SK119] Length = 255 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 116/196 (59%), Gaps = 4/196 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + N + GIDEVGRG LAGPVV A+IL+ + G++DSKK+S KR+ L Sbjct: 61 YENKILKDNPNALICGIDEVGRGPLAGPVVACAVILNKEHQYLGLDDSKKVSATKRKILN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E++ + AS + ID+ NI+ AT A+ A+ L+ P LID ++ D Sbjct: 121 EQLKEGVYDYAYGIASAEEIDEFNIYNATKLAMERAINQLKQQPNHLLID--AMTLDNAM 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AK RD LM KYP Y F+ +VGY T H Q +K+ Sbjct: 179 PQTSIIKGDAKSVSIAAASIMAKEYRDGLMAAVALKYPGYDFEKNVGYGTKSHLQGLKQL 238 Query: 192 GPSCIHRLTFRPLRNL 207 G + HR TF P++++ Sbjct: 239 GITPYHRKTFEPVKSM 254 >gi|197120709|ref|YP_002132660.1| ribonuclease HII [Anaeromyxobacter sp. K] gi|196170558|gb|ACG71531.1| Ribonuclease H [Anaeromyxobacter sp. K] Length = 283 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 115/195 (58%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 EA + E+ + VAG+DE G LAGPVV A +L + P GI+DSK++ +RE L Sbjct: 66 LRYEAELWERGLVHVAGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERL 125 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I +A +++ A + ID+ N++ A + A+ AV+ L P L+D R +P DLP Sbjct: 126 AEDIKRNAVCWAVARAEVEEIDRLNVYWAGMLALRRAVDGLSARPEHLLVDARKLP-DLP 184 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++SL+IAAASI+AK RD LM +P YGF H GYPTA+H + + Sbjct: 185 FPQTPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFEALGR 244 Query: 191 KGPSCIHRLTFRPLR 205 G IHR +F P+R Sbjct: 245 LGACPIHRRSFTPVR 259 >gi|89256503|ref|YP_513865.1| ribonuclease HII [Francisella tularensis subsp. holarctica LVS] gi|115314935|ref|YP_763658.1| ribonuclease HII [Francisella tularensis subsp. holarctica OSU18] gi|156502614|ref|YP_001428679.1| ribonuclease HII [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367835|ref|ZP_04983855.1| ribonuclease HII [Francisella tularensis subsp. holarctica 257] gi|290953972|ref|ZP_06558593.1| ribonuclease HII [Francisella tularensis subsp. holarctica URFT1] gi|295312649|ref|ZP_06803399.1| ribonuclease HII [Francisella tularensis subsp. holarctica URFT1] gi|122325051|sp|Q0BLL3|RNH2_FRATO RecName: Full=Ribonuclease HII; Short=RNase HII gi|122500629|sp|Q2A337|RNH2_FRATH RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225186|sp|A7NCM0|RNH2_FRATF RecName: Full=Ribonuclease HII; Short=RNase HII gi|89144334|emb|CAJ79621.1| Ribonuclease HII [Francisella tularensis subsp. holarctica LVS] gi|115129834|gb|ABI83021.1| ribonuclease H [Francisella tularensis subsp. holarctica OSU18] gi|134253645|gb|EBA52739.1| ribonuclease HII [Francisella tularensis subsp. holarctica 257] gi|156253217|gb|ABU61723.1| ribonuclease HII [Francisella tularensis subsp. holarctica FTNF002-00] Length = 187 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDE GRG L+GPVV A +ILD + I G+ DSKK++ KKR+ LY++I + A +I Sbjct: 2 IILGIDEAGRGPLSGPVVAAGVILDQDKIIDGLADSKKLTEKKRQSLYQQIITHAKAYTI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S Q ID+ NI +ATL AI+ NL+ L+DG +P + + A++KGDS Sbjct: 62 VEISPQQIDELNILQATLKAIHQVANNLERQFDKVLVDGNKLP-NWDYNSEAIVKGDSKI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P Sbjct: 121 IEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKP 180 Query: 204 LR 205 ++ Sbjct: 181 VQ 182 >gi|226327034|ref|ZP_03802552.1| hypothetical protein PROPEN_00895 [Proteus penneri ATCC 35198] gi|225204252|gb|EEG86606.1| hypothetical protein PROPEN_00895 [Proteus penneri ATCC 35198] Length = 196 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 88/187 (47%), Positives = 114/187 (60%), Gaps = 3/187 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK++ KKR LY++I A +I Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPANPIEGLTDSKKLTEKKRNALYDEIKEKALCWAI 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P LIDG P+ AVIKGDS+ Sbjct: 70 GRAEPEEIDELNILWATMKAMERAVAGLSITPDMVLIDGNRCPKLPMASQ-AVIKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M K YPDYGF H GYPT H + + G + HR +F P Sbjct: 129 QEISAASILAKVTRDREMEELDKLYPDYGFAKHKGYPTVFHMEKLALLGATPYHRKSFAP 188 Query: 204 LRN-LSV 209 ++ L++ Sbjct: 189 VKRALNL 195 >gi|304396658|ref|ZP_07378539.1| Ribonuclease H [Pantoea sp. aB] gi|304356167|gb|EFM20533.1| Ribonuclease H [Pantoea sp. aB] Length = 208 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 88/201 (43%), Positives = 115/201 (57%), Gaps = 8/201 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R Sbjct: 2 PDFIYPVA------RLIAGVDEVGRGPLVGAVVTAAVILDPANPITGLADSKKLSEKRRL 55 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 LY++I A S+ A + ID+ NI AT+ A+ AV L + P LIDG P Sbjct: 56 ALYDEIKEKALAWSLGRAEPEEIDQLNILHATMLAMQRAVAGLSIQPDYVLIDGNRCPAL 115 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + AV+KGDS+ I+AASIIAKV+RDR M +P YGF H GYPTA H + + Sbjct: 116 PM-PSQAVVKGDSLVAEISAASIIAKVSRDREMAELDLLFPQYGFAQHKGYPTALHMEKL 174 Query: 189 KEKGPSCIHRLTFRPLRNLSV 209 + G + HR +F P+RN + Sbjct: 175 TQYGATPHHRRSFAPVRNALL 195 >gi|253988139|ref|YP_003039495.1| ribonuclease HII [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779589|emb|CAQ82750.1| ribonuclease HII [Photorhabdus asymbiotica] Length = 196 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK+S K+REELY +IT A S+ Sbjct: 11 LIAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLADSKKLSEKRREELYLEITEKALCWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P LIDG PE A AVIKGD + Sbjct: 71 GRAEPEEIDQLNILHATMLAMQRAVAGLSISPEYVLIDGNRCPELPM-PAQAVIKGDGLV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M + +P+YGF H GYPTA H + + G + HR +F P Sbjct: 130 AEISAASIVAKVTRDREMVELDQLFPEYGFAKHKGYPTALHLEKLVLLGATKHHRKSFAP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|227872391|ref|ZP_03990738.1| ribonuclease H [Oribacterium sinus F0268] gi|227841751|gb|EEJ52034.1| ribonuclease H [Oribacterium sinus F0268] Length = 217 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 120/200 (60%), Gaps = 8/200 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++LE N+ +AG+DE GRG LAGPVV A IL +++ + +NDSKK++ K+RE L Sbjct: 17 WKLEEE--HANLTFIAGVDEAGRGPLAGPVVAATAILPKDHLFYYLNDSKKMTEKRREAL 74 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA---LIDGRSIPE 127 + +I +AI I S + ID+ NI +AT +A+ A+E ++ L++ Sbjct: 75 FLEIKENAIAYGIGIVSPERIDEINILQATYEAMRLAIEEMEKNFSIIPSLLLNDAVRIP 134 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + ++ GD+ SLSIAAAS++AKV+RD LM K+YP+YGF+ H GY T H + Sbjct: 135 MVDIPQIPIVHGDAKSLSIAAASVLAKVSRDHLMLDYAKEYPEYGFEKHKGYGTKAHTEA 194 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I E GP IHR +F L+ L Sbjct: 195 ILEYGPCPIHRRSF--LKKL 212 >gi|223938652|ref|ZP_03630542.1| Ribonuclease H [bacterium Ellin514] gi|223892640|gb|EEF59111.1| Ribonuclease H [bacterium Ellin514] Length = 245 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 78/205 (38%), Positives = 111/205 (54%), Gaps = 10/205 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN-------DSKKIS 64 E + ++ VAG+DE G G LAGPVV AA++ + + G+ DSK++ Sbjct: 11 LGFERELWQQGTTLVAGVDEAGCGPLAGPVVAAAVLFPCSWLEAGLFSKLRGLNDSKQLD 70 Query: 65 HKKREELYEKITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 +RE+ Y I + I I+ + ID+ NI +A + A++ L P+ L+DG Sbjct: 71 EDQREKFYNIIVNHPEIRHAIAVIDVEMIDRINIRQAAWRGMNQALDQLNPKPQHVLVDG 130 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 I A+++GD S SIAAAS++AKVTRDRLM+ K+YP YGF H GY T Sbjct: 131 LKIKWLP-YAQTALVQGDGKSYSIAAASVLAKVTRDRLMQDYDKQYPGYGFAEHKGYGTP 189 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 KH I +GP IHR +F P R + Sbjct: 190 KHLAAINAQGPCLIHRKSFAPFRPI 214 >gi|229522192|ref|ZP_04411609.1| ribonuclease HII [Vibrio cholerae TM 11079-80] gi|229341117|gb|EEO06122.1| ribonuclease HII [Vibrio cholerae TM 11079-80] Length = 206 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 89/202 (44%), Positives = 119/202 (58%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSTQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P+ +A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 TPKLPM-EAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|332184412|gb|AEE26666.1| Ribonuclease HII [Francisella cf. novicida 3523] Length = 185 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 82/185 (44%), Positives = 117/185 (63%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDE GRG L+GPVV A ++LDPN I G+ DSKK++ KKR+ LY++I S A +I Sbjct: 2 IILGIDEAGRGPLSGPVVAAGVVLDPNIIIDGLADSKKLTEKKRQSLYQQIISHAKAYTI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S ID+ NI +ATL A++ +NL+ L+DG +P + + A++KGDS Sbjct: 62 VEISSHQIDELNILQATLKAMHQVADNLKGQFDKILVDGNKLP-NWNYNSEAIVKGDSKI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 L I+AASI+AKV RD + + YP YGF H GYPT +H + IK+ G IHR +++P Sbjct: 121 LEISAASILAKVHRDNICLEHDRLYPQYGFAKHKGYPTKEHLENIKKYGVLDIHRKSYKP 180 Query: 204 LRNLS 208 ++ L Sbjct: 181 VQILL 185 >gi|119505680|ref|ZP_01627750.1| Ribonuclease H [marine gamma proteobacterium HTCC2080] gi|119458492|gb|EAW39597.1| Ribonuclease H [marine gamma proteobacterium HTCC2080] Length = 199 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 79/187 (42%), Positives = 114/187 (60%), Gaps = 3/187 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 +AG+DEVGRG LAG VV AA+I +++P G+ DSKK++ K+RE+L I SSA Sbjct: 14 YERIAGVDEVGRGPLAGDVVAAAVIFG-DSVPAGVTDSKKLTAKRREQLAVAIKSSARAW 72 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ AS ID NI +A+L A++ AV+ L + P L+DG +P ++ +I GD+ Sbjct: 73 CVARASVAEIDSLNILQASLLAMHRAVDGLSLAPEFVLVDGNRLPS-WNYKSKPIIGGDA 131 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +SI AASI+AKV RD M +YP YGF H GYPT +H + G + HR +F Sbjct: 132 LEVSIGAASILAKVQRDAEMVALDDEYPGYGFARHKGYPTREHMAALAALGVTPWHRKSF 191 Query: 202 RPLRNLS 208 P++ L Sbjct: 192 APVKRLL 198 >gi|90413543|ref|ZP_01221534.1| ribonuclease HII [Photobacterium profundum 3TCK] gi|90325475|gb|EAS41958.1| ribonuclease HII [Photobacterium profundum 3TCK] Length = 201 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L+++I A S+ Sbjct: 15 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIVGLTDSKKLSEKKRNVLFDEIKEKALAWSL 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI +AT+ A+ AV +L + P LIDG IP+ A AV+KGD Sbjct: 75 GRCEPEEIDELNILQATMVAMQRAVADLNIQPDFVLIDGNKIPQLPMA-AQAVVKGDLRV 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRDR M + ++P YGF H GYPT H + ++ G HR +F+P Sbjct: 134 AEISAASIIAKVTRDREMEVLDAQFPQYGFAKHKGYPTKAHFEALELHGAIEQHRKSFKP 193 Query: 204 LRNLS 208 ++ + Sbjct: 194 VKRIL 198 >gi|300715410|ref|YP_003740213.1| ribonuclease HII [Erwinia billingiae Eb661] gi|299061246|emb|CAX58355.1| Ribonuclease HII [Erwinia billingiae Eb661] Length = 207 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S Sbjct: 10 TCIAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIVEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P + AV+KGDS+ Sbjct: 70 LGRAEPEEIDRLNILHATMLAMQRAVAGLHICPDFVLIDGNRCPALAM-PSLAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRDR M +P YGF H GYPTA H + + + G + HR +F Sbjct: 129 VREISAASIIAKVTRDREMSELDVLFPQYGFAQHKGYPTALHMEKLAQHGVTPHHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|332878922|ref|ZP_08446637.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683273|gb|EGJ56155.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 198 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 105/186 (56%), Gaps = 3/186 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ + DSK+++ K+R++L I A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPPDFHNELLTDSKQLTEKQRDQLRPIIEREAVAYAVCH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +A++ A++ A+ L V+P +DG V+KGD + Sbjct: 72 VLPAEIDELNILRASITAMHRAIAQLSVVPTFIAVDGNKFVRYAQIPYACVVKGDGKIQT 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203 IAAASI+AK RD M ++P+Y + + GYPT +H++ I E G + HR TF+ P Sbjct: 132 IAAASILAKTYRDAYMSDLALQFPEYHWQQNKGYPTPEHRRAIAEYGATPHHRKTFQLLP 191 Query: 204 LRNLSV 209 + LS+ Sbjct: 192 VEQLSL 197 >gi|119946583|ref|YP_944263.1| ribonuclease H [Psychromonas ingrahamii 37] gi|189043643|sp|A1SYU9|RNH2_PSYIN RecName: Full=Ribonuclease HII; Short=RNase HII gi|119865187|gb|ABM04664.1| RNase HII [Psychromonas ingrahamii 37] Length = 204 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 82/185 (44%), Positives = 111/185 (60%), Gaps = 2/185 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DEVGRG L G VV A +ILD NN G+ DSKK+S KK L+++I A + Sbjct: 16 FTLIAGVDEVGRGPLVGDVVTACVILDANNPISGLADSKKLSEKKLALLFDEIQEKALFV 75 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ AS ID NI AT+ A+ AV+NL + P IDG P+ +V+KGD+ Sbjct: 76 AVGRASPVEIDALNILHATMLAMQRAVDNLSISPEFVFIDGNRCPQLSM-PCESVVKGDA 134 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+AASIIAKVTRDR M K+YP YGF H GYPT H I++ G + +R +F Sbjct: 135 RVAEISAASIIAKVTRDREMCELDKQYPHYGFAKHKGYPTKAHFAAIEKHGVTPEYRKSF 194 Query: 202 RPLRN 206 +P++ Sbjct: 195 KPVKK 199 >gi|46201021|ref|ZP_00055903.2| COG0164: Ribonuclease HII [Magnetospirillum magnetotacticum MS-1] Length = 201 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 86/199 (43%), Positives = 116/199 (58%), Gaps = 9/199 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISH 65 P LE+ + V GIDEVGRG LAGPVV AA+ILD P + ++DSKK+S Sbjct: 2 PDLALESEIG----GIVCGIDEVGRGPLAGPVVAAAVILDAARLPKALLDRLDDSKKLSK 57 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 + REEL E + ++A I AS ID+ NI +AT A+ A + L AL+DG Sbjct: 58 RNREELAELVPATATIGFGEASVDEIDRLNILQATFLAMRRAYDALGRECGHALVDGNRP 117 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P C V+ GD ISLSIAAAS++AKV RD LM +P++G++ + GY TA+H Sbjct: 118 PRLP-CPIRCVVGGDGISLSIAAASVVAKVRRDGLMAELALAHPEFGWERNAGYGTAEHL 176 Query: 186 QVIKEKGPSCIHRLTFRPL 204 +K GP+ HR +F P+ Sbjct: 177 DALKRLGPTPHHRRSFAPV 195 >gi|85711419|ref|ZP_01042478.1| Ribonuclease HII [Idiomarina baltica OS145] gi|85694920|gb|EAQ32859.1| Ribonuclease HII [Idiomarina baltica OS145] Length = 188 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 90/182 (49%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 + G+DE GRG +AGPVV AA+ILDP G+NDSKK+S KKRE L E+I + A SI Sbjct: 1 MICGVDEAGRGPIAGPVVAAAVILDPEQPIEGLNDSKKLSAKKRERLSEEIKAKALYWSI 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + + ID+ NI A++ A+ AVE L P L+DG +P DL A AV+ GD+ Sbjct: 61 AQSDVDEIDQLNILWASMLAMKRAVEALPEAPTEVLVDGNRVP-DLVVPARAVVGGDASE 119 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AKV RDR M H+ YP Y FD H Y TA+H +++K GP IHR +FRP Sbjct: 120 PTIAAASILAKVERDRQMLEWHQTYPQYEFDRHKAYGTARHLELLKLYGPCVIHRRSFRP 179 Query: 204 LR 205 +R Sbjct: 180 VR 181 >gi|269798033|ref|YP_003311933.1| ribonuclease HII/HIII [Veillonella parvula DSM 2008] gi|269094662|gb|ACZ24653.1| ribonuclease HII/HIII [Veillonella parvula DSM 2008] Length = 265 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 128/197 (64%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ E M ++ ++ VAG+DEVGRG +AGPV VAA+IL P + G+NDSKK++ +KRE L Sbjct: 63 YDYEGMFYDQGIYHVAGVDEVGRGPIAGPVTVAAVILPPMTLIPGLNDSKKLTEEKREAL 122 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A+ +S S + ID+ NI++ T A+Y A+ L V + + D DL Sbjct: 123 YDIIMDEAVAVSCISYGPEKIDELNIYEVTRQAMYEAIRTLSVPAEAVVADAMK-LPDLT 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGDS S +IAAASIIAKVTRDR M+ ++P YGF H GY T H++ I++ Sbjct: 182 IPVESIIKGDSKSANIAAASIIAKVTRDRYMKSLDDEFPGYGFGIHKGYYTELHKEAIEQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 +G + +HR +F P++++ Sbjct: 242 QGVTPLHRKSFEPIKSI 258 >gi|153003177|ref|YP_001377502.1| ribonuclease HII [Anaeromyxobacter sp. Fw109-5] gi|152026750|gb|ABS24518.1| Ribonuclease H [Anaeromyxobacter sp. Fw109-5] Length = 338 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + VAG+DE G LAGPVV A IL + P GI+DSK++ ++RE L Sbjct: 89 LRYEGELWDGGVTLVAGVDEAGMAPLAGPVVAGACILPRDYRPRGIDDSKQLDRRERERL 148 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I ++A +++ A + ID+ NI++A L A+ AV+ L P L+D R +P +L Sbjct: 149 AEDIKANAVCWAVARAEVEEIDRLNIYRAGLLALTRAVQALTPAPGHVLVDARKLP-ELR 207 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD++SL+IAAASI+AK TRD LM YP YGF +H GYPTA+H Q ++ Sbjct: 208 LPQTPIIHGDALSLTIAAASILAKTTRDELMGELDALYPGYGFCNHKGYPTAEHFQALER 267 Query: 191 KGPSCIHRLTFRPLR 205 G IHR +F+P+R Sbjct: 268 LGACPIHRRSFQPVR 282 >gi|153854846|ref|ZP_01996069.1| hypothetical protein DORLON_02074 [Dorea longicatena DSM 13814] gi|149752548|gb|EDM62479.1| hypothetical protein DORLON_02074 [Dorea longicatena DSM 13814] Length = 194 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 91/194 (46%), Positives = 119/194 (61%), Gaps = 6/194 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + GIDEVGRG AGPVV A+IL ++ +NDSKK+S KKRE LY+ Sbjct: 4 YEKE--HSDCQYICGIDEVGRGPFAGPVVAGAVILPKDDPILYLNDSKKLSEKKREALYD 61 Query: 74 KITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ + I S ID+ NI +AT +A+ A+ NL+V P L D +IP ++ Sbjct: 62 EIMERAVATGIGVVSPARIDEINILQATYEAMRMAIGNLKVQPDLLLNDAVTIP-EVEIP 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASIIAKVTRDRLM K P Y F S+ GY T KH + +KE G Sbjct: 121 QVPIIKGDAKSVSIAAASIIAKVTRDRLMVEYDKVLPGYDFASNKGYGTKKHIEGLKELG 180 Query: 193 PSCIHRLTFRPLRN 206 PS IHR TF ++ Sbjct: 181 PSPIHRRTF--IKK 192 >gi|301155660|emb|CBW15128.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Haemophilus parainfluenzae T3T1] Length = 200 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 85/189 (44%), Positives = 114/189 (60%), Gaps = 1/189 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L +I Sbjct: 6 YPEGYQLFAGVDEVGRGPLVGAVVTAAVILDPNNPIAGLADSKKLSEKKRLALAAEIKEK 65 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ A ID+ NI A++ A+ AV+ L++ P L+DG IP +L A AV+ Sbjct: 66 ALAWAMGRAEPAEIDELNILHASMLAMERAVKALEIQPHFVLVDGNRIPPNLSLPAQAVV 125 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS+ I+AASI+AKV RD+ M KKYP+Y F H GYPT H + + E GP + Sbjct: 126 KGDSLVAEISAASILAKVARDQEMEELDKKYPEYAFAQHKGYPTKLHLEKLAELGPLPEY 185 Query: 198 RLTFRPLRN 206 R +F P++ Sbjct: 186 RRSFSPVKK 194 >gi|308185754|ref|YP_003929885.1| Ribonuclease HII [Pantoea vagans C9-1] gi|308056264|gb|ADO08436.1| Ribonuclease HII [Pantoea vagans C9-1] Length = 208 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 88/201 (43%), Positives = 115/201 (57%), Gaps = 8/201 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R Sbjct: 2 PDFIYPVA------RLIAGVDEVGRGPLVGAVVTAAVILDPANPITGLADSKKLSEKRRL 55 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 LY++I A S+ A + ID+ NI AT+ A+ AV L + P LIDG P Sbjct: 56 SLYDEIKEKALAWSLGRAEPEEIDQLNILHATMLAMQRAVAGLSIQPDYVLIDGNRCPAL 115 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + AV+KGDS+ I+AASIIAKV+RDR M +P YGF H GYPTA H + + Sbjct: 116 PM-PSQAVVKGDSLVAEISAASIIAKVSRDREMAELDLLFPQYGFAQHKGYPTALHMEKL 174 Query: 189 KEKGPSCIHRLTFRPLRNLSV 209 + G + HR +F P+RN + Sbjct: 175 TQYGATPHHRRSFAPVRNALL 195 >gi|149907539|ref|ZP_01896286.1| ribonuclease HII [Moritella sp. PE36] gi|149809209|gb|EDM69138.1| ribonuclease HII [Moritella sp. PE36] Length = 199 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 85/194 (43%), Positives = 116/194 (59%), Gaps = 3/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 + ++ + VAG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR+ L+ Sbjct: 2 YDEVIYPEG-KLVAGVDEVGRGPLVGDVVTAAVILDPNNPIVGLTDSKKLSDKKRQLLFP 60 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A SI S ID+ NI +AT+ A+ AV L + P IDG P Sbjct: 61 EIKEKALAWSIGRCSPSEIDELNILQATMVAMQRAVAGLTLQPEHVFIDGNRCPALPM-P 119 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A A++KGD I+AASI+AKV RD M H++YP+YGF H GYPT H + + E G Sbjct: 120 AEAIVKGDLRVAEISAASILAKVVRDAEMDELHERYPEYGFAQHKGYPTKAHMEKLAELG 179 Query: 193 PSCIHRLTFRPLRN 206 P+ +R +F+P++ Sbjct: 180 PTEEYRKSFKPVQR 193 >gi|330964157|gb|EGH64417.1| ribonuclease HII [Pseudomonas syringae pv. actinidiae str. M302091] Length = 217 Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE+L+ +I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREKLFVEIQEKALCWF 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ + V+KGDS Sbjct: 72 IARAEVEEIDQLNILHATMLAMKRAVEGLNITPKLALIDGNRCPQLS-VPSAPVVKGDSK 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMAALELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFG 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|317046996|ref|YP_004114644.1| ribonuclease H [Pantoea sp. At-9b] gi|316948613|gb|ADU68088.1| Ribonuclease H [Pantoea sp. At-9b] Length = 208 Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 86/191 (45%), Positives = 113/191 (59%), Gaps = 2/191 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 N +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I Sbjct: 3 EFIYPNARLIAGVDEVGRGPLVGAVVTAAVILDPAQPIIGLADSKKLSEKRRLALYDEIK 62 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A S+ A + ID+ NI AT+ A+ AV L ++P LIDG P + A Sbjct: 63 EKALAWSLGRAEPEEIDQINILHATMLAMQRAVAGLPLVPDFVLIDGNRCPALPM-PSQA 121 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS+ I+AASI+AKVTRDR M +P YGF H GYPTA H + + + G + Sbjct: 122 VVKGDSLVAEISAASILAKVTRDREMAELDALFPQYGFAQHKGYPTALHMERLTQHGATP 181 Query: 196 IHRLTFRPLRN 206 HR +F P+RN Sbjct: 182 HHRRSFAPVRN 192 >gi|239815594|ref|YP_002944504.1| ribonuclease HII [Variovorax paradoxus S110] gi|239802171|gb|ACS19238.1| Ribonuclease H [Variovorax paradoxus S110] Length = 240 Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L ++I + A S Sbjct: 20 GLVAGVDEAGRGPLAGPVVAAAVILDDQRPIRGLADSKTLTALQRERLNDQILAKALCCS 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ A+ + ID HNI +AT+ A+ AVE L++ P L+DG +P A A++KGD+ Sbjct: 80 VAQATVEEIDTHNILQATMLAMRRAVEGLRLKPAKVLVDGNRLPTLDVL-AEAIVKGDAR 138 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDRL H ++P YGF H GY T +H + ++ G HR +F Sbjct: 139 IKAISAASILAKVHRDRLCEQLHLEFPHYGFAGHKGYGTPEHLEALQRHGACIHHRRSFS 198 Query: 203 PL 204 P+ Sbjct: 199 PV 200 >gi|189043611|sp|A7H722|RNH2_ANADF RecName: Full=Ribonuclease HII; Short=RNase HII Length = 315 Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + VAG+DE G LAGPVV A IL + P GI+DSK++ ++RE L Sbjct: 66 LRYEGELWDGGVTLVAGVDEAGMAPLAGPVVAGACILPRDYRPRGIDDSKQLDRRERERL 125 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I ++A +++ A + ID+ NI++A L A+ AV+ L P L+D R +P +L Sbjct: 126 AEDIKANAVCWAVARAEVEEIDRLNIYRAGLLALTRAVQALTPAPGHVLVDARKLP-ELR 184 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD++SL+IAAASI+AK TRD LM YP YGF +H GYPTA+H Q ++ Sbjct: 185 LPQTPIIHGDALSLTIAAASILAKTTRDELMGELDALYPGYGFCNHKGYPTAEHFQALER 244 Query: 191 KGPSCIHRLTFRPLR 205 G IHR +F+P+R Sbjct: 245 LGACPIHRRSFQPVR 259 >gi|254286446|ref|ZP_04961403.1| ribonuclease HII [Vibrio cholerae AM-19226] gi|150423395|gb|EDN15339.1| ribonuclease HII [Vibrio cholerae AM-19226] Length = 206 Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 119/202 (58%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S Sbjct: 1 MAKKPSIELHPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPHRPIVGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A S+ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWSVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPKLPMA-AQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 QQVIKEKGPSCIHRLTFRPLRN 206 I++ G HR +F P++ Sbjct: 180 FAAIEQHGVIEQHRKSFGPVKR 201 >gi|254480314|ref|ZP_05093562.1| ribonuclease HII [marine gamma proteobacterium HTCC2148] gi|214039876|gb|EEB80535.1| ribonuclease HII [marine gamma proteobacterium HTCC2148] Length = 200 Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG LAG VV AA+ILDP+N G+ DSKK+S +REEL I AI SI+ Sbjct: 14 IAGVDEVGRGPLAGDVVTAAVILDPSNPVEGLRDSKKLSESRREELAIIIREKAIAWSIA 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI +A+L A+ AVE L P L+DG +P+ + V+KGD Sbjct: 74 RASVAEIDELNILQASLLAMKRAVEALTPQPGYVLVDGNRLPQ-WSYPSEPVVKGDDRVP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV RD + +KYP YGF +H GYPTA H ++ G + +HR ++ P+ Sbjct: 133 AIAAASILAKVQRDNELVALEQKYPGYGFAAHKGYPTAAHLHALQSLGVTPVHRRSYAPV 192 Query: 205 RNL 207 R + Sbjct: 193 RRI 195 >gi|319941636|ref|ZP_08015960.1| ribonuclease HII [Sutterella wadsworthensis 3_1_45B] gi|319804866|gb|EFW01720.1| ribonuclease HII [Sutterella wadsworthensis 3_1_45B] Length = 245 Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 86/188 (45%), Positives = 109/188 (57%), Gaps = 6/188 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE GRG LAGPV AA+ILDP N G+ DSKK+S KKRE L I A I Sbjct: 37 AGVDEAGRGPLAGPVCAAAVILDPENPIEGLADSKKLSAKKREALAPIIRERALAWGIGW 96 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQ-----VIPRSALIDGRSIPEDLPCQAFAVIKGD 140 A+ + ID+ NI AT A+ AV L+ V P LIDG P LPC + ++KGD Sbjct: 97 ATVEEIDRVNILNATYLAMERAVATLKSRSGSVTPEYILIDGNRRPPHLPCMSDTIVKGD 156 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 +I+AASI+AK RD M +K+P YGF H GY TA+H +K GP HR T Sbjct: 157 DKVPAISAASILAKTARDHRMAELDQKWPAYGFAKHAGYGTAQHLDALKRLGPCPEHRTT 216 Query: 201 FRPLRNLS 208 F P++++ Sbjct: 217 FEPIKSML 224 >gi|239623747|ref|ZP_04666778.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521778|gb|EEQ61644.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 219 Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 90/195 (46%), Positives = 114/195 (58%), Gaps = 6/195 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + GIDE GRG LAGPV A+IL + +NDSKK+S K+REEL+ Sbjct: 23 EYEKEYGSSAF--ICGIDEAGRGPLAGPVAAGAVILPKDCRILYLNDSKKLSEKRREELF 80 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E+I A+ S+ A+ ID+ NI +AT +A+ AV L V P L D + DL Sbjct: 81 EEIKEKAVAWSVGIATPARIDEINILQATYEAMREAVGQLTVKPDVLLNDAVT-IPDLDI 139 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ SLSIAAASI+AKVTRD +M + +P YGF H GY TA H I+E Sbjct: 140 LQVPIIKGDAKSLSIAAASILAKVTRDHMMAGYEEMFPGYGFAKHKGYGTAAHIAAIREL 199 Query: 192 GPSCIHRLTFRPLRN 206 GP IHR TF +RN Sbjct: 200 GPCPIHRRTF--IRN 212 >gi|269101953|ref|ZP_06154650.1| ribonuclease HII [Photobacterium damselae subsp. damselae CIP 102761] gi|268161851|gb|EEZ40347.1| ribonuclease HII [Photobacterium damselae subsp. damselae CIP 102761] Length = 201 Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 85/185 (45%), Positives = 111/185 (60%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L+++I A S+ Sbjct: 15 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRNALFDEIKEKALAWSL 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ID+ NI +AT+ A+ AV L + P LIDG PE A AV+KGD Sbjct: 75 GRCEADEIDELNILQATMVAMQRAVAGLNITPDFVLIDGNKTPELPMA-AQAVVKGDLRV 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +YP +GF H GYPT H ++E G HR +F+P Sbjct: 134 AEISAASILAKVTRDREMDELDAQYPQFGFAKHKGYPTKAHFAALEEHGVIEQHRKSFKP 193 Query: 204 LRNLS 208 ++ + Sbjct: 194 VKRIL 198 >gi|325519162|gb|EGC98633.1| ribonuclease HII [Burkholderia sp. TJI49] Length = 214 Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 89/188 (47%), Positives = 118/188 (62%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE-KITS 77 + V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LYE I Sbjct: 21 FSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPAQPIEGLDDSKALSAKKRDALYELIIAR 80 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 S ++SAS ID NI AT+ A+ AVE L V+P A IDG P +A A++ Sbjct: 81 SVSYCVASASVDEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPTLS-VRAEAIV 139 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+++P YGF+ H GY T KH ++E GP H Sbjct: 140 SGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTPKHLAALREHGPCEAH 199 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 200 RRSFAPVR 207 >gi|264679353|ref|YP_003279260.1| ribonuclease HII/HIII [Comamonas testosteroni CNB-2] gi|299532312|ref|ZP_07045705.1| ribonuclease HII [Comamonas testosteroni S44] gi|262209866|gb|ACY33964.1| ribonuclease HII/HIII [Comamonas testosteroni CNB-2] gi|298719720|gb|EFI60684.1| ribonuclease HII [Comamonas testosteroni S44] Length = 237 Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats. Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPVV AA+ILD G+NDSKK++ +RE LY++I + A Sbjct: 17 GLVAGVDEAGRGPLAGPVVAAAVILDDLKPIAGLNDSKKLTANRREVLYDEIRAKALCFC 76 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS Q ID+ NI KATL A+ AV L++ P L+DG +P+ QA A++KGDS+ Sbjct: 77 IAQASVQEIDEINILKATLLAMRRAVMGLRLKPVLVLVDGNQLPQID-VQAEAIVKGDSL 135 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR +YP YGF H GY TA H Q ++ G + HR +F Sbjct: 136 VQAISAASILAKVTRDRWCERLDAQYPQYGFAGHKGYGTAAHLQALRAHGATAEHRRSFA 195 Query: 203 PL 204 P+ Sbjct: 196 PV 197 >gi|222474916|ref|YP_002563331.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Florida] gi|222419052|gb|ACM49075.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Florida] Length = 339 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKK 67 P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 105 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 164 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG P Sbjct: 165 REELFCKITAHARYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 224 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T H Q Sbjct: 225 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 284 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 +K G + HR TF P++ LS Sbjct: 285 LKLYGKTAQHRSTFAPVKQLS 305 >gi|148656899|ref|YP_001277104.1| ribonuclease HII [Roseiflexus sp. RS-1] gi|189043651|sp|A5UX01|RNH2_ROSS1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|148569009|gb|ABQ91154.1| Ribonuclease H [Roseiflexus sp. RS-1] Length = 227 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 109/200 (54%), Gaps = 5/200 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKIS 64 P E E +R +AG+DE GRG LAGPVV AA+IL ++ G+ DSK +S Sbjct: 6 PTVEEERALRAAGYRAIAGLDEAGRGCLAGPVVAAAVILPDAVIDTPDVLDGVADSKMLS 65 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +R +L+E+ITS A+ A+ +I + P AL+ Sbjct: 66 PAQRADLFERITSLAVAWAVGATPAHIIDSHGILPATRLAMQVALLRLPRPADALLIDAV 125 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 ++ P A+IKGD+ LSIAAASIIAKVTRDRLM +P YGF SH GY T +H Sbjct: 126 TLDNWPLPQRALIKGDARCLSIAAASIIAKVTRDRLMDALDACWPQYGFASHKGYGTVQH 185 Query: 185 QQVIKEKGPSCIHRLTFRPL 204 QQ ++ GP+ HR TFRPL Sbjct: 186 QQALRRYGPTPHHRRTFRPL 205 >gi|241760682|ref|ZP_04758774.1| ribonuclease HII [Neisseria flavescens SK114] gi|241318863|gb|EER55389.1| ribonuclease HII [Neisseria flavescens SK114] Length = 230 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 108/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL + G+ DSKK+S KKR+ L + I A+ SI+ Sbjct: 40 AGVDEAGRGPLVGSVFAAAVILPEHFDLPGLTDSKKLSEKKRDILAQLIKEQAVAWSIAF 99 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI AT+ A+ +VE L V P IDG +P+DL A AV+KGDS + Sbjct: 100 ADPDEILQLNILHATMAAMKRSVEGLSVTPDKVWIDGNRVPKDLNVPAEAVVKGDSKIIE 159 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M K+YP YGFD H GY TA+H +K+ G HR F P++ Sbjct: 160 ISAASVLAKTARDAEMYELAKRYPQYGFDCHKGYGTAQHLAALKQYGVLPEHRRDFAPVK 219 Query: 206 NLS 208 L Sbjct: 220 TLL 222 >gi|197303275|ref|ZP_03168316.1| hypothetical protein RUMLAC_01998 [Ruminococcus lactaris ATCC 29176] gi|197297701|gb|EDY32260.1| hypothetical protein RUMLAC_01998 [Ruminococcus lactaris ATCC 29176] Length = 252 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 88/194 (45%), Positives = 117/194 (60%), Gaps = 6/194 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + GIDE GRG LAGPVV A+IL + +NDSKK+S +REELY+ Sbjct: 62 YEEKYSQ--YRCICGIDEAGRGPLAGPVVAGAVILPADCEILYLNDSKKLSAARREELYD 119 Query: 74 KITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ + I AS ID+ NI +AT +A+ AV L P L D +IP ++ Sbjct: 120 EIMEKAVATGIGMASPARIDEINILQATYEAMREAVSKLSREPDLLLNDAVTIP-EMTIM 178 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASI+AKVTRDRLM K P+YGF H GY + +H I++ G Sbjct: 179 QVPIIKGDAKSVSIAAASILAKVTRDRLMIEYDKILPEYGFAGHKGYGSKEHIAAIQKYG 238 Query: 193 PSCIHRLTFRPLRN 206 PS IHR TF ++N Sbjct: 239 PSPIHRRTF--IKN 250 >gi|330959212|gb|EGH59472.1| ribonuclease HII [Pseudomonas syringae pv. maculicola str. ES4326] Length = 217 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE+L+ +I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREKLFVEIQEKALCWF 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ + V++GD+ Sbjct: 72 IARAEVEEIDQLNILHATMLAMKRAVEGLVITPKLALIDGNRCPQLS-VPSAPVVQGDAK 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMAALELVYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|254797053|ref|YP_003081891.1| ribonuclease HII [Neorickettsia risticii str. Illinois] gi|254590300|gb|ACT69662.1| ribonuclease HII [Neorickettsia risticii str. Illinois] Length = 195 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 4/194 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 R+ +AG+DEVGRG LAGPVV A+IL N G DSK +S R YEKI S Sbjct: 3 YRKSENGLIAGVDEVGRGCLAGPVVACAVILTENLAIPG--DSKVLSPAARLSWYEKIMS 60 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--LPCQAFA 135 ++ +I ++ + I+ NI ATL A+ A+E L V+P + LIDGR I + + + Sbjct: 61 NSYNAIGMSTVKEIETMNILNATLLAMERALERLPVVPTTVLIDGRDIINNAAKYKEVKS 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+ GD I I AASI+AKVTRDR M YP Y + + GY T +H + + + G + Sbjct: 121 VVSGDKIYEEIKAASIVAKVTRDRWMEELDLTYPYYRWRFNKGYGTKEHLEALAKYGVTD 180 Query: 196 IHRLTFRPLRNLSV 209 HR F P++ + + Sbjct: 181 HHRRKFAPVKRMLL 194 >gi|330975385|gb|EGH75451.1| ribonuclease HII [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 217 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE+LY +I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEAKREKLYVEIQEKALCWF 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + PR ALIDG P+ + V+KGDS Sbjct: 72 IARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQLS-VPSAPVVKGDSK 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|91788543|ref|YP_549495.1| ribonuclease HII [Polaromonas sp. JS666] gi|123164802|sp|Q12A45|RNH2_POLSJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|91697768|gb|ABE44597.1| RNase HII [Polaromonas sp. JS666] Length = 199 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DE GRG L GPVV AA+ILD N G+ DSKK++ ++RE LY++I + A S Sbjct: 14 GLLAGVDEAGRGPLMGPVVAAAVILDELNPIKGLADSKKLTPQRREALYDEIRAKALCCS 73 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+ + ID+ NI +AT+ A+ AVE+L++ P L+DG +P + AVI GD+I Sbjct: 74 IALATAEEIDRLNILQATMLAMRRAVESLRLKPNKVLVDGNRLPTLA-IVSEAVIGGDAI 132 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR H +YP YGF SH GY TA+H ++E G HR +F Sbjct: 133 VPAISAASILAKVYRDRWCAEFHLEYPQYGFASHKGYSTAEHLAALREHGACPQHRRSFA 192 Query: 203 PL 204 P+ Sbjct: 193 PV 194 >gi|225025287|ref|ZP_03714479.1| hypothetical protein EIKCOROL_02184 [Eikenella corrodens ATCC 23834] gi|224941905|gb|EEG23114.1| hypothetical protein EIKCOROL_02184 [Eikenella corrodens ATCC 23834] Length = 194 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 78/183 (42%), Positives = 110/183 (60%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE GRG L G V AA++L G+ DSKK+S ++R+EL I A +++ Sbjct: 5 AGVDEAGRGPLVGSVFAAAVVLPNEYDLPGLTDSKKLSERRRDELAVLIKQQALAWCVAA 64 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID+ NI AT+ A+ AV L+ +P IDG +P DL C+A AVIKGDS + Sbjct: 65 ASVEEIDRLNILHATMLAMRRAVHGLERLPEKVWIDGNRVPPDLGCEAEAVIKGDSKIIQ 124 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M ++YP YGF+ H GY TA+H ++ G HR +F P+R Sbjct: 125 ISAASVLAKTARDAEMYALAERYPQYGFERHKGYGTAEHLAALQRHGALPEHRRSFAPVR 184 Query: 206 NLS 208 + Sbjct: 185 EIL 187 >gi|222151079|ref|YP_002560233.1| ribonuclease HII [Macrococcus caseolyticus JCSC5402] gi|254807980|sp|B9EBC6|RNH2_MACCJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|222120202|dbj|BAH17537.1| ribonuclease HII [Macrococcus caseolyticus JCSC5402] Length = 264 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 82/196 (41%), Positives = 122/196 (62%), Gaps = 5/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E N V GIDEVGRG LAGPV+ A+IL+ + G+NDSK++S KR L Sbjct: 60 LEYERRY---NGKVVCGIDEVGRGPLAGPVIACAVILNDGHHYIGLNDSKQLSKHKRASL 116 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 Y+ +T S +I +AS + IDK NI++AT A++ A++ L V P LID ++ + Sbjct: 117 YDALTQSVTYAIGAASVEEIDKFNIYEATKLAMHRAIDKLPVKPDVLLID--AMNLNTGL 174 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAAS+IAKV RD LM H+++P Y F+ + GY T +H + + Sbjct: 175 IEESIIKGDAKSVSIAAASVIAKVYRDHLMEEIHEEFPYYDFNRNAGYGTKRHLDGLMQY 234 Query: 192 GPSCIHRLTFRPLRNL 207 G + HR +F P++++ Sbjct: 235 GITAHHRKSFEPIKSM 250 >gi|134296014|ref|YP_001119749.1| ribonuclease HII [Burkholderia vietnamiensis G4] gi|166225178|sp|A4JF61|RNH2_BURVG RecName: Full=Ribonuclease HII; Short=RNase HII gi|134139171|gb|ABO54914.1| Ribonuclease H [Burkholderia vietnamiensis G4] Length = 216 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 120/188 (63%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + Sbjct: 23 FSRPDDIVCGVDEAGRGPLAGPVVAAAVILDPAQPIEGLDDSKALSAKKRDALYDLIVAR 82 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 + ++SAS ID NI AT+ A+ AVE L ++P A IDG P + +A A++ Sbjct: 83 SRAYCVASASVDEIDTLNILHATMLAMKRAVEGLSLMPTLAQIDGNRCPTLM-VRAEAIV 141 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H ++P YGFD H GY TAKH ++E GP H Sbjct: 142 SGDALVPSISAASILAKVTRDRMLVELHARHPVYGFDVHAGYGTAKHLAALREHGPCEAH 201 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 202 RRSFAPVR 209 >gi|295676811|ref|YP_003605335.1| Ribonuclease H [Burkholderia sp. CCGE1002] gi|295436654|gb|ADG15824.1| Ribonuclease H [Burkholderia sp. CCGE1002] Length = 249 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 88/189 (46%), Positives = 117/189 (61%), Gaps = 3/189 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITS 77 E V G+DE GRG LAGPVV AA+I DP + G++DSK ++ KRE LY+KI Sbjct: 25 FESADDIVCGVDEAGRGPLAGPVVAAAVIFDPTRPMIRGLDDSKALTALKREALYDKIVD 84 Query: 78 SA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A ++SA+ + ID NI AT+ A+ AVE L V+P IDG P ++ AV Sbjct: 85 RALAYCVASATVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPTLS-IRSEAV 143 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I GD++ SI+AASI+AKVTRDR++ H YP YGFD+H GY T +H ++E GP Sbjct: 144 IGGDALVKSISAASILAKVTRDRMLVELHHAYPMYGFDAHAGYGTPQHLAALREHGPCEH 203 Query: 197 HRLTFRPLR 205 HR +F P+R Sbjct: 204 HRRSFAPVR 212 >gi|257465535|ref|ZP_05629906.1| ribonuclease HII [Actinobacillus minor 202] gi|257451195|gb|EEV25238.1| ribonuclease HII [Actinobacillus minor 202] Length = 196 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 88/192 (45%), Positives = 115/192 (59%), Gaps = 2/192 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 N +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR +L E+I Sbjct: 2 TAFIYPNAKLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRLKLSEEI 61 Query: 76 TSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A S+ A + ID+ NI AT+ A+ AVE L + P L+DG IP A Sbjct: 62 KAKALSWSLGRAEPEEIDQLNILHATMLAMQRAVEGLHIQPDFVLVDGNRIPTLN-IPAQ 120 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 AV+KGDS+ I+AASI+AKV RD M K++P+YGF H GYPT H + + E G + Sbjct: 121 AVVKGDSLVQEISAASILAKVARDLEMDELDKQFPEYGFAKHKGYPTKLHFEKLTELGAT 180 Query: 195 CIHRLTFRPLRN 206 HR +F P+ Sbjct: 181 PFHRKSFAPVAR 192 >gi|54310070|ref|YP_131090.1| ribonuclease HII [Photobacterium profundum SS9] gi|73917828|sp|Q6LN38|RNH2_PHOPR RecName: Full=Ribonuclease HII; Short=RNase HII gi|46914509|emb|CAG21288.1| putative ribonuclease HII [Photobacterium profundum SS9] Length = 201 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 86/185 (46%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L+++I A+ S+ Sbjct: 15 LIAGVDEVGRGPLVGAVVTAAVILDPNNPIVGLTDSKKLSEKKRNVLFDEIKEKAVAWSL 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ID+ NI +AT+ A+ AV +L V P LIDG IP+ A AV+KGD Sbjct: 75 GRCEPEEIDELNILQATMVAMQRAVADLSVQPDFVLIDGNKIPQLPMA-AQAVVKGDLRV 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRDR M + ++P YGF H GYPT H + ++ G HR +F+P Sbjct: 134 AEISAASIIAKVTRDREMEVLDAQFPQYGFAKHKGYPTKVHVEALELHGAIEQHRKSFKP 193 Query: 204 LRNLS 208 ++ + Sbjct: 194 VKRIL 198 >gi|225077059|ref|ZP_03720258.1| hypothetical protein NEIFLAOT_02112 [Neisseria flavescens NRL30031/H210] gi|224951616|gb|EEG32825.1| hypothetical protein NEIFLAOT_02112 [Neisseria flavescens NRL30031/H210] Length = 230 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 108/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL + G+ DSKK+S KKR+ L + I A+ SI+ Sbjct: 40 AGVDEAGRGPLVGSVFAAAVILPEHFDLPGLTDSKKLSEKKRDMLAQMIKEQAVAWSIAF 99 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I K NI AT+ A+ AVE L V P IDG +P+DL A AV+KGDS + Sbjct: 100 ADPDEILKLNILHATMAAMKRAVEGLSVAPDKVWIDGNRVPKDLNVPAEAVVKGDSKIIE 159 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M K+YP YGFD H GY TA+H +K+ G HR F P++ Sbjct: 160 ISAASVLAKTARDAEMYELAKRYPQYGFDRHKGYGTAQHLAALKQYGVLLEHRRDFAPVK 219 Query: 206 NLS 208 L Sbjct: 220 TLL 222 >gi|326316587|ref|YP_004234259.1| ribonuclease H [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373423|gb|ADX45692.1| Ribonuclease H [Acidovorax avenae subsp. avenae ATCC 19860] Length = 240 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L+++I + A S Sbjct: 21 GLVAGVDEAGRGPLAGPVVAAAVILDELQPIDGLADSKTLTAARREALFDEIRAKALCCS 80 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ A+ + ID NI +AT+ A+ AV L++ P L+DG +P A A++KGD++ Sbjct: 81 VAEATVEEIDTLNILQATMLAMRRAVAGLRLKPVRVLVDGNRLPPLD-VPAEAIVKGDAL 139 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR H+ YP YGF SH GY TA+H ++ G HR +F Sbjct: 140 VQAISAASILAKVTRDRWCAQLHQAYPHYGFASHKGYGTAEHMAALQVHGACPEHRRSFA 199 Query: 203 PL 204 P+ Sbjct: 200 PV 201 >gi|124007381|ref|ZP_01692088.1| ribonuclease HII [Microscilla marina ATCC 23134] gi|123987214|gb|EAY26954.1| ribonuclease HII [Microscilla marina ATCC 23134] Length = 195 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 116/181 (64%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAGPVV AA+IL PN + DSKK++ K RE+L + I AI +++ Sbjct: 13 AGVDEVGRGCLAGPVVAAAVILPPNYKNELLMDSKKLNKKTREKLRKTIEEEAISWAVAE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ASH ID+ NI A+ A++ A+E L+ P LIDG ++KGD+ LS Sbjct: 73 ASHTEIDEINILNASFLAMHRAIEQLEPEPELLLIDGNRFNPYKFVAYQCIVKGDNKFLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AK RD LM ++P+Y ++++VGYPT KH+ I++ G + HR++F+ ++ Sbjct: 133 IAAASILAKTYRDDLMEKLAVEHPEYDWENNVGYPTKKHRAAIEQHGATPWHRMSFKLIK 192 Query: 206 N 206 + Sbjct: 193 D 193 >gi|254282787|ref|ZP_04957755.1| ribonuclease HII [gamma proteobacterium NOR51-B] gi|219678990|gb|EED35339.1| ribonuclease HII [gamma proteobacterium NOR51-B] Length = 204 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 116/194 (59%), Gaps = 3/194 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + E++ VAG+DEVGRG LAG VV AA+IL + P GI DSKK+S K+R +L +I Sbjct: 5 NLFDERSGQRVAGVDEVGRGPLAGDVVAAAVILG-DVSPAGITDSKKLSPKRRAQLAVQI 63 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A SI AS ID+ NI +A+L A+ AVE L + P L+DG +P ++ Sbjct: 64 KAEACCWSIGRASVDEIDRLNILEASLLAMTRAVEGLSLRPDFILVDGNRLPR-WDYRSE 122 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 V+ GD I +I AASIIAKV RD + ++YP YGF H GYPT H + + G + Sbjct: 123 PVVGGDGIEPAIGAASIIAKVQRDEELIALDEQYPGYGFAQHKGYPTRAHLEALASLGVT 182 Query: 195 CIHRLTFRPLRNLS 208 IHR +F P+R L Sbjct: 183 PIHRRSFAPVRRLL 196 >gi|296158890|ref|ZP_06841718.1| Ribonuclease H [Burkholderia sp. Ch1-1] gi|295890765|gb|EFG70555.1| Ribonuclease H [Burkholderia sp. Ch1-1] Length = 247 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 90/189 (47%), Positives = 121/189 (64%), Gaps = 3/189 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITS 77 E V G+DE GRG LAGPVV AA+I DP+ + G++DSK +S KKR+ELY+KI Sbjct: 24 FETPHDIVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLSAKKRDELYDKIVD 83 Query: 78 SA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A I+SAS + ID NI AT+ A+ AVE L V+P IDG P ++ AV Sbjct: 84 RALAYCIASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPTLS-VRSEAV 142 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I GD++ SI+AASI+AKVTRDR++ H+ +P YGF++H GY T +H ++E GP Sbjct: 143 IGGDALVKSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLAALREHGPCEH 202 Query: 197 HRLTFRPLR 205 HR +F P+R Sbjct: 203 HRRSFAPVR 211 >gi|325983657|ref|YP_004296059.1| ribonuclease H [Nitrosomonas sp. AL212] gi|325533176|gb|ADZ27897.1| Ribonuclease H [Nitrosomonas sp. AL212] Length = 190 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 81/184 (44%), Positives = 106/184 (57%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + G+DE GRG LAGPV A ++L+ G+ DSKK+S KR L I A SI Sbjct: 1 MICGVDEAGRGPLAGPVYAACVVLNKTLTIDGLADSKKLSETKRNALAVIIKKLAKAWSI 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S AS Q ID+ NI +A+L A+ AVE+L P LIDG P C +++GDS+ Sbjct: 61 SYASVQEIDRLNILQASLLAMKRAVESLPFTPDIVLIDGNQSPHL-HCPMRTIVRGDSLI 119 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AK RD M+ H+ +P YGFD H GYPT H ++ G IHR +F P Sbjct: 120 PEISAASILAKTARDAEMQRLHRHFPRYGFDKHKGYPTKVHLAALQRYGACAIHRQSFAP 179 Query: 204 LRNL 207 +R L Sbjct: 180 VRTL 183 >gi|256819586|ref|YP_003140865.1| ribonuclease HII [Capnocytophaga ochracea DSM 7271] gi|256581169|gb|ACU92304.1| Ribonuclease H [Capnocytophaga ochracea DSM 7271] Length = 198 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 103/186 (55%), Gaps = 3/186 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ + DSK+++ K+R L I S A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPPDFKNDLLTDSKQLTEKQRNLLRPIIESEAVAYAVCH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +A++ A++ A+ L P +DG V+KGD + Sbjct: 72 VLPAEIDELNILRASITAMHRAIAQLSPTPEFIAVDGNKFVPYQKIPYACVVKGDGKIQT 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203 IAAASI+AK RD M +++P+Y + + GYPT +H++ I E G + HR TF+ P Sbjct: 132 IAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEYGATEHHRKTFQLLP 191 Query: 204 LRNLSV 209 + LS+ Sbjct: 192 VEQLSL 197 >gi|114764188|ref|ZP_01443426.1| ribonuclease HII [Pelagibaca bermudensis HTCC2601] gi|114543340|gb|EAU46356.1| ribonuclease HII [Roseovarius sp. HTCC2601] Length = 215 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 93/208 (44%), Positives = 136/208 (65%), Gaps = 1/208 (0%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 M + P E + +N+ VAG+DEVGRG LAGPVV AA++LDP IP G+NDS Sbjct: 1 MVFMGGMDGPDDSFETPLWGENLR-VAGVDEVGRGPLAGPVVAAAVVLDPLCIPPGLNDS 59 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KK+S K+R L + A +SI A+ + ID+ NI +A+L A++ AV L+ + AL+ Sbjct: 60 KKLSAKRRARLAGWLHECAEVSIGVATVEEIDELNILQASLLAMHRAVTGLKRPAQHALV 119 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGR IP LPC A +IKGD S+SIAAAS++AK RDRLMR +++P YG++++ GY Sbjct: 120 DGRFIPPQLPCHATPIIKGDGRSVSIAAASVVAKCYRDRLMRDLAQQHPGYGWETNAGYG 179 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 + KH++ ++ G + HR +F+P+ N+ Sbjct: 180 SKKHKEALQNLGVTPHHRRSFKPIHNIL 207 >gi|313201207|ref|YP_004039865.1| ribonuclease h [Methylovorus sp. MP688] gi|312440523|gb|ADQ84629.1| Ribonuclease H [Methylovorus sp. MP688] Length = 188 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 112/185 (60%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 + G+DE GRG LAG V AA+IL+P G+ DSKK+S KKR+ L +I A +I Sbjct: 5 IICGVDEAGRGPLAGAVYAAAVILNPARPIPGLADSKKLSEKKRDALTLEIKQHALAWAI 64 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ++ + ID NI +A++ A+ AVE L + P L+DG P+ A A++ GDS Sbjct: 65 AHSTVEEIDSINILQASMLAMRRAVEQLGIQPHKLLVDGLHCPQVSMV-AEAIVDGDSKV 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD+ + ++YP YGF H GYPTA H ++ E G S +HR ++ P Sbjct: 124 EAISAASILAKTARDKELYALDQQYPHYGFAKHKGYPTAFHMAMLIEHGVSPVHRRSYAP 183 Query: 204 LRNLS 208 ++ L Sbjct: 184 VKKLL 188 >gi|56416548|ref|YP_153622.1| ribonuclease HII [Anaplasma marginale str. St. Maries] gi|56387780|gb|AAV86367.1| ribonuclease HII [Anaplasma marginale str. St. Maries] Length = 339 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 2/201 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKK 67 P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 105 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 164 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REEL+ KIT+ A + A + I++HNI A+ ++ A++NL V L+DG P Sbjct: 165 REELFCKITAHAKYGVGFARVREIEQHNILVASHISMKRALQNLGVKADLVLVDGSRAPA 224 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T H Q Sbjct: 225 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 284 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 +K G + HR TF P++ LS Sbjct: 285 LKLYGKTAQHRSTFAPVKQLS 305 >gi|15603863|ref|NP_246937.1| ribonuclease HII [Pasteurella multocida subsp. multocida str. Pm70] gi|13431849|sp|P57986|RNH2_PASMU RecName: Full=Ribonuclease HII; Short=RNase HII gi|12722439|gb|AAK04082.1| RnhB [Pasteurella multocida subsp. multocida str. Pm70] Length = 197 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 90/191 (47%), Positives = 119/191 (62%), Gaps = 2/191 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 K + +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S KKR L E+I Sbjct: 5 YPKGVELIAGVDEVGRGPLVGAVVTAAVILDPHQPILGLNDSKKLSEKKRLLLAEEIKQK 64 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A S+ A + ID+ NI AT+ A+ AVENL++ P L+DG +P +L A A++ Sbjct: 65 ALAWSLGRAEAEEIDQLNILHATMLAMKRAVENLKIQPHFVLVDGNRVP-ELMIPAQAIV 123 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD + I+AASI+AKV RD+ M K+YP+Y F H GYPTA H + E GP H Sbjct: 124 KGDGLVAEISAASILAKVARDQEMAELDKRYPEYAFAQHKGYPTALHLAKLAELGPLAQH 183 Query: 198 RLTFRPLRNLS 208 R +F P+R L Sbjct: 184 RRSFAPVRKLL 194 >gi|333029420|ref|ZP_08457481.1| Ribonuclease H [Bacteroides coprosuis DSM 18011] gi|332740017|gb|EGJ70499.1| Ribonuclease H [Bacteroides coprosuis DSM 18011] Length = 199 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 111/181 (61%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-ISS 85 AG DE GRG LAGPV AA+IL + +NDSK++S KKR EL I + A+ + Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPSDFENNLLNDSKQLSEKKRYELRVIIENEALACGVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ A++ L+V P LIDG + ++KGD+ LS Sbjct: 73 VSVEEIDKINILNASFLAMHRAIDCLKVRPEHLLIDGNRFNPYDGIKHTTIVKGDATFLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AK RD M H KYP+Y ++ + GYPT KH++ I++ G + +HR TFR L+ Sbjct: 133 IAAASILAKTYRDDYMLAQHNKYPNYDWNHNKGYPTKKHREAIEKYGITPLHRHTFRLLK 192 Query: 206 N 206 + Sbjct: 193 D 193 >gi|94500636|ref|ZP_01307166.1| ribonuclease HII [Oceanobacter sp. RED65] gi|94427191|gb|EAT12171.1| ribonuclease HII [Oceanobacter sp. RED65] Length = 222 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 89/211 (42%), Positives = 127/211 (60%), Gaps = 8/211 (3%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++ F+LE +++ + G+DE G G L G VV AA+ILDPNN +NDSKK+S Sbjct: 6 DYSQQAWFQLEQSLKQSGILY-CGVDEAGAGPLCGDVVAAAVILDPNNPIDSLNDSKKLS 64 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQ------VIPRS 117 KKRE L+ +I A I+ + Q ID+ NI +A + A+ AV+ L+ +P Sbjct: 65 EKKREALFPEIKEKALAYCIARCTPQEIDEINILQARMLAMTRAVKGLRDQNGEICLPEH 124 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 A IDG +P+ LPCQA V+KGD++ +I+AAS++AKV RD M K YP Y H Sbjct: 125 AFIDGNRLPQGLPCQATPVVKGDALVAAISAASVLAKVQRDHDMVELDKHYPGYELAKHK 184 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 GYPT H Q++KE GP+ I+R +F P++ L Sbjct: 185 GYPTKAHLQLLKENGPTDIYRKSFGPVKALL 215 >gi|225374458|ref|ZP_03751679.1| hypothetical protein ROSEINA2194_00073 [Roseburia inulinivorans DSM 16841] gi|225213696|gb|EEG96050.1| hypothetical protein ROSEINA2194_00073 [Roseburia inulinivorans DSM 16841] Length = 253 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 89/194 (45%), Positives = 119/194 (61%), Gaps = 6/194 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + GIDEVGRG LAGPVV A+IL + INDSKK+S KREELY+ Sbjct: 63 YEREYADYGY--ICGIDEVGRGPLAGPVVAGAVILPKDCDILYINDSKKLSAAKREELYD 120 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A+ + I AS Q ID+ NI +AT +A+ A+ L V P L D + + + Sbjct: 121 VIMEKAVAVGIGMASSQRIDEINILQATYEAMREAISKLSVKPDILLNDAVT-IPGVSIR 179 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SI AASI+AKVTRDRLM K P YGF S+ GY +A+H + ++E G Sbjct: 180 QVPIIKGDAKSISIGAASIVAKVTRDRLMVEYDKILPQYGFASNKGYGSAEHIRALQEAG 239 Query: 193 PSCIHRLTFRPLRN 206 PS IHR++F ++N Sbjct: 240 PSPIHRVSF--IKN 251 >gi|91762761|ref|ZP_01264726.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique HTCC1002] gi|91718563|gb|EAS85213.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique HTCC1002] Length = 186 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 117/186 (62%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M +AG+DEVGRG+L GPV AAIIL+ + + DSK ++ KREEL + I ++I + Sbjct: 1 MKILAGVDEVGRGSLIGPVYAAAIILNNSIDKKLLKDSKTLTKDKREELEKYIKKNSIWA 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I AS + I+K NI +A+L A+ A+ L+ P LIDG +P+ + VIKGD Sbjct: 61 IGQASTKEIEKINILQASLLAMKRAILKLKTKPSLVLIDGNKLPDLKNYKLKYVIKGDQK 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKV+RD+ + KK+ +YG+D++ GY T +H IK+ G + HR TF Sbjct: 121 IPSISAASIVAKVSRDKFITKLSKKFNNYGWDTNSGYGTKEHLNAIKKFGITKYHRKTFS 180 Query: 203 PLRNLS 208 P+ +L Sbjct: 181 PICDLL 186 >gi|300724780|ref|YP_003714105.1| RNAse HII [Xenorhabdus nematophila ATCC 19061] gi|297631322|emb|CBJ92017.1| RNAse HII [Xenorhabdus nematophila ATCC 19061] Length = 196 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ K+RE LY +I A S+ Sbjct: 10 LIAGVDEVGRGPLVGDVVTAAVILDPAKPITGLMDSKKLTEKRREALYLEIKEKALCWSL 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L ++P LIDG P + AV+KGDS+ Sbjct: 70 GRAEPEEIDQLNILHATMLAMQRAVAGLVIVPDYVLIDGNRCPALAM-PSQAVVKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++PDYGF H GYPTA H + + G + HR +F P Sbjct: 129 AEISAASILAKVTRDREMAELDNQFPDYGFAKHKGYPTALHLEKLALHGATAHHRKSFAP 188 Query: 204 LRN 206 ++ Sbjct: 189 VKR 191 >gi|167032173|ref|YP_001667404.1| ribonuclease HII [Pseudomonas putida GB-1] gi|189043642|sp|B0KSB3|RNH2_PSEPG RecName: Full=Ribonuclease HII; Short=RNase HII gi|166858661|gb|ABY97068.1| Ribonuclease H [Pseudomonas putida GB-1] Length = 207 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE L+++I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREALFDEICEKALSFC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI +AT+ A+ AVE L + P+ ALIDG P+ A V+KGDS Sbjct: 72 IARAEVEEIDRLNILQATMLAMQRAVEGLHITPKLALIDGNRCPKL-AVPASPVVKGDSQ 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|170733361|ref|YP_001765308.1| ribonuclease HII [Burkholderia cenocepacia MC0-3] gi|238688549|sp|B1JUD6|RNH2_BURCC RecName: Full=Ribonuclease HII; Short=RNase HII gi|169816603|gb|ACA91186.1| Ribonuclease H [Burkholderia cenocepacia MC0-3] Length = 214 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 120/188 (63%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + Sbjct: 21 FSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTR 80 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 + ++SAS ID NI AT+ A+ AVE L V+P A IDG P +A A++ Sbjct: 81 SHAYCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLS-VRAEAIV 139 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP H Sbjct: 140 SGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAH 199 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 200 RRSFAPVR 207 >gi|254247897|ref|ZP_04941218.1| Ribonuclease HII [Burkholderia cenocepacia PC184] gi|124872673|gb|EAY64389.1| Ribonuclease HII [Burkholderia cenocepacia PC184] Length = 214 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 120/188 (63%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + Sbjct: 21 FSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTR 80 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 + ++SAS ID NI AT+ A+ AVE L V+P A IDG P +A A++ Sbjct: 81 SHAYCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLS-VRAEAIV 139 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP H Sbjct: 140 SGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAH 199 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 200 RRSFAPVR 207 >gi|107028815|ref|YP_625910.1| ribonuclease HII [Burkholderia cenocepacia AU 1054] gi|116690026|ref|YP_835649.1| ribonuclease HII [Burkholderia cenocepacia HI2424] gi|122977720|sp|Q1BHG8|RNH2_BURCA RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225172|sp|A0K8C9|RNH2_BURCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|105897979|gb|ABF80937.1| Ribonuclease H [Burkholderia cenocepacia AU 1054] gi|116648115|gb|ABK08756.1| Ribonuclease H [Burkholderia cenocepacia HI2424] Length = 214 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 120/188 (63%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + Sbjct: 21 FSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKVLSAKKRDALYDLIVTR 80 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 + ++SAS ID NI AT+ A+ AVE L V+P A IDG P +A A++ Sbjct: 81 SHAYCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLS-VRAEAIV 139 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP H Sbjct: 140 SGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAH 199 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 200 RRSFAPVR 207 >gi|322831602|ref|YP_004211629.1| Ribonuclease H [Rahnella sp. Y9602] gi|321166803|gb|ADW72502.1| Ribonuclease H [Rahnella sp. Y9602] Length = 198 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 109/182 (59%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+RE LY +I A S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPANPIAGLADSKKLSEKRREALYIEIKEKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ID+ NI AT+ A+ AV L + P LIDG P+ A++KGDS Sbjct: 73 RAEPHEIDELNILHATMLAMQRAVAGLCITPDMVLIDGNRCPKLPMASQ-AIVKGDSKVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M ++P+YGF H GYPT H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMVELDLQFPEYGFAKHKGYPTPVHLESLARLGATTHHRRSFSPV 191 Query: 205 RN 206 + Sbjct: 192 KR 193 >gi|194289778|ref|YP_002005685.1| ribonuclease hii [Cupriavidus taiwanensis LMG 19424] gi|193223613|emb|CAQ69620.1| RIBONUCLEASE HII PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 258 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 80/187 (42%), Positives = 112/187 (59%), Gaps = 5/187 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 + + G+DE GRG LAGPV AA++LDP G+ DSK ++ KRE LYEKI A Sbjct: 26 IQRLCGVDEAGRGPLAGPVYAAAVVLDPKRPIRGLADSKILTAAKREALYEKICERALGW 85 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I+ A+ + ID NI A++ A+ AV+ V+P +DG P+ + A++K Sbjct: 86 HIAFATVEEIDTINILHASMLAMQRAVQGLAASGVVPDLVQVDGNRCPQ-VAYPVEAIVK 144 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD++ +I+AASI+AKV RDR + H YP YGFDSHVGY T +H + E G + HR Sbjct: 145 GDALVKAISAASILAKVARDRALMELHAAYPQYGFDSHVGYGTPQHMAALAEFGATPHHR 204 Query: 199 LTFRPLR 205 +F P+R Sbjct: 205 RSFAPVR 211 >gi|170692156|ref|ZP_02883319.1| Ribonuclease H [Burkholderia graminis C4D1M] gi|170142586|gb|EDT10751.1| Ribonuclease H [Burkholderia graminis C4D1M] Length = 273 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 119/184 (64%), Gaps = 3/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSA-II 81 V G+DE GRG LAGPVV AA+I DP+ + G++DSK ++ KKR+ELYEKI A Sbjct: 46 DIVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLTAKKRDELYEKIVDRALAY 105 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I+SA+ + ID NI AT+ A+ AVE L V P +DG P ++ AVI GD+ Sbjct: 106 CIASATVEEIDTLNILHATMLAMKRAVEGLSVTPTLVKVDGNRCPMLS-VRSEAVIGGDA 164 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + SI+AASI+AKVTRDR++ H+ +P YGF++H GY T +H ++E GP HR +F Sbjct: 165 LVKSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSF 224 Query: 202 RPLR 205 P+R Sbjct: 225 APVR 228 >gi|77165488|ref|YP_344013.1| ribonuclease H [Nitrosococcus oceani ATCC 19707] gi|254433570|ref|ZP_05047078.1| ribonuclease HII [Nitrosococcus oceani AFC27] gi|97189090|sp|Q3J9L3|RNH2_NITOC RecName: Full=Ribonuclease HII; Short=RNase HII gi|76883802|gb|ABA58483.1| RNase HII [Nitrosococcus oceani ATCC 19707] gi|207089903|gb|EDZ67174.1| ribonuclease HII [Nitrosococcus oceani AFC27] Length = 201 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 80/184 (43%), Positives = 107/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DEVGRG LAGPV+ A+ILDP G+ DSK+++ RE L I + A+ + Sbjct: 15 QRVAGVDEVGRGPLAGPVIAGAVILDPECPISGVKDSKQLTAPARERLAALIQAQAVAWA 74 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI +A+L A+ A+ L V+P L+DG C A++KGD Sbjct: 75 LGRAEAAEIDQFNILQASLLAMERAISALSVVPDLVLVDG-KHCPPTVCPVRAIVKGDQQ 133 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++I AASI+AKV RD M + YP YGF H GYPT H +K GP IHR +FR Sbjct: 134 IMAIGAASIVAKVARDAEMIAFEESYPGYGFGIHKGYPTRAHLAALKALGPCSIHRRSFR 193 Query: 203 PLRN 206 P+R Sbjct: 194 PVRR 197 >gi|262276832|ref|ZP_06054625.1| ribonuclease HII [alpha proteobacterium HIMB114] gi|262223935|gb|EEY74394.1| ribonuclease HII [alpha proteobacterium HIMB114] Length = 199 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 72/185 (38%), Positives = 103/185 (55%), Gaps = 1/185 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 V G+DEVGRG LAGPVV AA+IL + ++DSKK+S KRE+ +E + + + Sbjct: 13 FVVGVDEVGRGPLAGPVVSAAVILPLDFDYKCLDDSKKLSKVKREKAFEILKKKSKFKLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-PCQAFAVIKGDSIS 143 A IDK NI +A+L ++ AV+ + ++ D IKGD+ Sbjct: 73 IAEVDEIDKINILQASLISMKRAVDQFDLPKDHKILVDGPWSFDKTNQNIITKIKGDAKY 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SIAAASIIAKV RD++M K + Y +D++ GY T KH + IKE G + HR +F P Sbjct: 133 PSIAAASIIAKVYRDQIMSKLSKNFVQYSWDTNSGYGTQKHLKAIKEHGITVHHRKSFAP 192 Query: 204 LRNLS 208 + + Sbjct: 193 IHKIL 197 >gi|121594909|ref|YP_986805.1| ribonuclease HII [Acidovorax sp. JS42] gi|222110440|ref|YP_002552704.1| ribonuclease hii [Acidovorax ebreus TPSY] gi|189043530|sp|A1W904|RNH2_ACISJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807973|sp|B9MGN1|RNH2_DIAST RecName: Full=Ribonuclease HII; Short=RNase HII gi|120606989|gb|ABM42729.1| RNase HII [Acidovorax sp. JS42] gi|221729884|gb|ACM32704.1| Ribonuclease H [Acidovorax ebreus TPSY] Length = 209 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 84/184 (45%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE+LY++I + A S Sbjct: 19 GLVAGVDEAGRGPLAGPVVAAAVILDDLQPIAGLADSKVLTAARREKLYDEIRAKALCCS 78 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID+HNI +AT+ A+ AV L++ P L+DG +P A A++KGD++ Sbjct: 79 IAEASVEEIDQHNILQATMLAMRRAVLGLRLKPVRVLVDGNRLPPLD-VPAEAIVKGDAL 137 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKVTRDR H++YP YGF H GY TA+H ++ G HR +F Sbjct: 138 VASISAASILAKVTRDRWCAQLHQQYPVYGFAGHKGYGTAEHLAALEVHGACPQHRRSFA 197 Query: 203 PLRN 206 P+ Sbjct: 198 PVAR 201 >gi|314933425|ref|ZP_07840790.1| ribonuclease HII [Staphylococcus caprae C87] gi|313653575|gb|EFS17332.1| ribonuclease HII [Staphylococcus caprae C87] Length = 256 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 117/197 (59%), Gaps = 4/197 (2%) Query: 14 LEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + N + G+DEVGRG LAGPVV A+IL+ ++ G+NDSKK+ K+R L Sbjct: 61 YENEILNHNNEALICGVDEVGRGPLAGPVVACAVILNRDHHYLGLNDSKKVPAKQRSILN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 EK+ + + + A+ Q ID NI++AT A+ A++ L + P LID + D Sbjct: 121 EKLKDNVMSYAYGIATPQEIDDLNIYRATQVAMQRAIDQLSIKPTHLLIDAMKL--DNNI 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AK RD M+ +YP+YGF+ +VGY T +H + I Sbjct: 179 PQTSIIKGDAKSVSIAAASIMAKEYRDDYMKELANEYPNYGFEKNVGYGTKQHLEAIDTF 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR TF P++++ Sbjct: 239 GVIKEHRQTFEPIKSML 255 >gi|160900366|ref|YP_001565948.1| ribonuclease HII [Delftia acidovorans SPH-1] gi|238687159|sp|A9BML8|RNH2_DELAS RecName: Full=Ribonuclease HII; Short=RNase HII gi|160365950|gb|ABX37563.1| Ribonuclease H [Delftia acidovorans SPH-1] Length = 235 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 94/203 (46%), Positives = 124/203 (61%), Gaps = 6/203 (2%) Query: 4 NSIPERPHFELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 S+P P E VAG+DE GRG LAGPVV AA+ILD N G+NDSKK Sbjct: 5 KSLPPLP---PEQACLPWHPPGLVAGVDEAGRGPLAGPVVAAAVILDDLNPIEGLNDSKK 61 Query: 63 ISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ +RE LY++I + A SI+ AS + ID+ NI +ATL A+ AV L++ P L+D Sbjct: 62 LTAARREALYDEIRAKALCCSIAEASVEEIDRLNILQATLLAMRRAVLGLRLKPVLVLVD 121 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G L QA A++KGDS+ +I+AASI+AKVTRDR H++YP+YGFD H GY T Sbjct: 122 GN-QLPVLDVQAEAIVKGDSLVQAISAASILAKVTRDRWCERLHEQYPEYGFDGHKGYGT 180 Query: 182 AKHQQVIKEKGPSCIHRLTFRPL 204 A H ++ G HR TF P+ Sbjct: 181 AAHLAALRLHGACEEHRRTFAPV 203 >gi|305666398|ref|YP_003862685.1| ribonuclease HII [Maribacter sp. HTCC2170] gi|88708390|gb|EAR00627.1| ribonuclease HII [Maribacter sp. HTCC2170] Length = 198 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 68/177 (38%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 G DE GRG LAGPV AA+IL + +NDSK++S KR L I SA ++ Sbjct: 12 VGTDEAGRGCLAGPVTAAALILPKDFKNVMLNDSKQLSENKRTILKPIIEQSAVCFGVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + IDK NI A++ A++ A++ L + ++DG +IKGDS +S Sbjct: 72 IFPEEIDKINILNASILAMHKAIDQLTDDLKFIIVDGNRFKPYHDIPFECIIKGDSKYMS 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAAS++AK RD M H+++P Y + + GYPT +H++ I+E G + HR +FR Sbjct: 132 IAAASVLAKTYRDGYMEQLHEEFPMYNWKKNKGYPTKEHREAIREYGITKYHRKSFR 188 >gi|302187912|ref|ZP_07264585.1| ribonuclease HII [Pseudomonas syringae pv. syringae 642] Length = 218 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A Sbjct: 13 DLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWF 72 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ + V+KGDS Sbjct: 73 IARAEVEEIDQLNILHATMLAMQRAVEGLSITPKLALIDGNRCPQLS-VPSAPVVKGDSK 131 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 132 VPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 191 Query: 203 PLR 205 P+R Sbjct: 192 PVR 194 >gi|325285587|ref|YP_004261377.1| Ribonuclease H [Cellulophaga lytica DSM 7489] gi|324321041|gb|ADY28506.1| Ribonuclease H [Cellulophaga lytica DSM 7489] Length = 208 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 71/176 (40%), Positives = 101/176 (57%), Gaps = 1/176 (0%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSA 86 G DE GRG LAGPV AAIIL N +NDSK +S KKRE L I A ++ Sbjct: 23 GTDEAGRGCLAGPVTAAAIILPENFKNDILNDSKLLSEKKRELLKPIIEEQAICYGVTHI 82 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 + ID+ NI A++ A++ +++ L P ++DG + +IKGDS LSI Sbjct: 83 YPKKIDEINILNASILAMHKSIDKLTTKPEFIIVDGNRFKPYKKIKHECIIKGDSKFLSI 142 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 AAAS++AK RD M HK++P Y + + GYPT +H++ I+E G + HR +F+ Sbjct: 143 AAASVLAKTYRDAYMEKIHKEFPMYNWKKNKGYPTKEHREAIREFGLTKYHRKSFK 198 >gi|330950666|gb|EGH50926.1| ribonuclease HII [Pseudomonas syringae Cit 7] Length = 218 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A Sbjct: 13 DLVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWF 72 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + PR ALIDG P+ + V+KGDS Sbjct: 73 IARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQLS-VPSAPVVKGDSK 131 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 132 VPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 191 Query: 203 PLR 205 P+R Sbjct: 192 PVR 194 >gi|330896074|gb|EGH28295.1| ribonuclease HII [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936802|gb|EGH40959.1| ribonuclease HII [Pseudomonas syringae pv. pisi str. 1704B] Length = 218 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A Sbjct: 13 DLVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWF 72 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + PR ALIDG P+ + V+KGDS Sbjct: 73 IARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQLS-VPSAPVVKGDSK 131 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 132 VPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 191 Query: 203 PLR 205 P+R Sbjct: 192 PVR 194 >gi|66044605|ref|YP_234446.1| ribonuclease HII [Pseudomonas syringae pv. syringae B728a] gi|75502991|sp|Q4ZWR4|RNH2_PSEU2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|63255312|gb|AAY36408.1| Ribonuclease H [Pseudomonas syringae pv. syringae B728a] gi|330968946|gb|EGH69012.1| ribonuclease HII [Pseudomonas syringae pv. aceris str. M302273PT] Length = 218 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A Sbjct: 13 DLVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLYVEIQEKALCWF 72 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + PR ALIDG P+ + V+KGDS Sbjct: 73 IARAEVEEIDQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQLS-VPSAPVVKGDSK 131 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 132 VPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 191 Query: 203 PLR 205 P+R Sbjct: 192 PVR 194 >gi|17546137|ref|NP_519539.1| ribonuclease HII [Ralstonia solanacearum GMI1000] gi|39932439|sp|Q8XZH7|RNH2_RALSO RecName: Full=Ribonuclease HII; Short=RNase HII gi|17428433|emb|CAD15120.1| probable ribonuclease hII (rnase hII) protein [Ralstonia solanacearum GMI1000] Length = 236 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 113/194 (58%), Gaps = 5/194 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 ++ + G+DE GRG LAGPV AA++L+P G+ DSK ++ KKRE LY++I Sbjct: 20 AAGKRARRILCGVDEAGRGPLAGPVTAAAVVLNPRKPIQGLADSKVLTAKKREALYDEIV 79 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLPCQ 132 A ++ A+ + ID+ NI AT+ A+ AV+ V+P +DG P+ Sbjct: 80 EKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQVAFA- 138 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGD++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G Sbjct: 139 VEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGTPQHLAAIERHG 198 Query: 193 PSCIHRLTFRPLRN 206 + HR +F P+R Sbjct: 199 VTPHHRRSFAPVRR 212 >gi|187924419|ref|YP_001896061.1| ribonuclease HII [Burkholderia phytofirmans PsJN] gi|238689609|sp|B2T5I0|RNH2_BURPP RecName: Full=Ribonuclease HII; Short=RNase HII gi|187715613|gb|ACD16837.1| Ribonuclease H [Burkholderia phytofirmans PsJN] Length = 248 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 121/184 (65%), Gaps = 3/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSA-II 81 V G+DE GRG LAGPVV AA+I DP+ + G++DSK ++ KKR+ELY+KI A Sbjct: 29 DIVCGVDEAGRGPLAGPVVAAAVIFDPSKPMIRGLDDSKVLTAKKRDELYDKIVDRALAY 88 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I+SA+ + ID NI AT+ A+ AVE L V+P IDG P ++ AVI GD+ Sbjct: 89 CIASATVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPTLS-VRSEAVIGGDA 147 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + SI+AASI+AKVTRDR++ H+ +P YGF++H GY T +H + ++E GP HR +F Sbjct: 148 LVKSISAASILAKVTRDRMLLELHQTHPVYGFNAHAGYGTPQHLKALREHGPCEHHRRSF 207 Query: 202 RPLR 205 P+R Sbjct: 208 APVR 211 >gi|315225093|ref|ZP_07866910.1| ribonuclease HII [Capnocytophaga ochracea F0287] gi|314944776|gb|EFS96808.1| ribonuclease HII [Capnocytophaga ochracea F0287] Length = 198 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 3/186 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + + DSK+++ K+R L I A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPSDFKNDLLTDSKQLTEKQRNLLRPIIEREAVAYAVCH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +A++ A++ A+ L++ P +DG V+KGD + Sbjct: 72 VLPAEIDELNILRASITAMHRAIAQLKITPDFIAVDGNKFVPYQKIPYACVVKGDGKIQT 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203 IAAASI+AK RD M +++P+Y + + GYPT +H++ I E G + HR TF+ P Sbjct: 132 IAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEYGATKHHRKTFQLLP 191 Query: 204 LRNLSV 209 + LS+ Sbjct: 192 VEQLSL 197 >gi|289626020|ref|ZP_06458974.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868556|gb|EGH03265.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 217 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWF 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ + V+KGDS Sbjct: 72 IARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQLS-VPSAPVVKGDSR 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|257487068|ref|ZP_05641109.1| ribonuclease HII [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289651463|ref|ZP_06482806.1| ribonuclease HII [Pseudomonas syringae pv. aesculi str. 2250] gi|320323106|gb|EFW79195.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. B076] gi|320329622|gb|EFW85611.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. race 4] gi|330878151|gb|EGH12300.1| ribonuclease HII [Pseudomonas syringae pv. glycinea str. race 4] gi|330894608|gb|EGH27269.1| ribonuclease HII [Pseudomonas syringae pv. mori str. 301020] gi|330985124|gb|EGH83227.1| ribonuclease HII [Pseudomonas syringae pv. lachrymans str. M301315] Length = 217 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWF 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ + V+KGDS Sbjct: 72 IARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQLS-VPSAPVVKGDSR 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|167586869|ref|ZP_02379257.1| ribonuclease HII [Burkholderia ubonensis Bu] Length = 214 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 89/188 (47%), Positives = 120/188 (63%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LYE I + Sbjct: 21 FSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKALSAKKRDALYELIVAR 80 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 + ++SAS ID NI AT+ A+ AVE L V+P A IDG P +A A++ Sbjct: 81 SRAYCVASASVDEIDTLNILHATMLAMKRAVEGLAVVPTLAQIDGNRCPTLS-VRAEAIV 139 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP H Sbjct: 140 SGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAH 199 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 200 RRSFAPVR 207 >gi|163754098|ref|ZP_02161221.1| ribonuclease HII [Kordia algicida OT-1] gi|161326312|gb|EDP97638.1| ribonuclease HII [Kordia algicida OT-1] Length = 198 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPV AA+IL + +NDSK++S KKRE L I A ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPKDFSNEILNDSKQLSEKKREILRPVIELEALTFGVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 IDK NI A++ ++ A+ L +P ++DG +IKGD L+ Sbjct: 72 IYPVEIDKINILNASILGMHQAIAKLSTVPEHIIVDGNKFKPYKDIPYQTIIKGDGKYLN 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAAS++AK RD M H+++P Y + + GYPT +H++ IK+ G + HR++FR Sbjct: 132 IAAASVLAKTYRDAYMEKIHEEFPMYNWKKNKGYPTVEHREAIKKYGTTKYHRMSFR 188 >gi|71738075|ref|YP_275964.1| ribonuclease HII [Pseudomonas syringae pv. phaseolicola 1448A] gi|298488346|ref|ZP_07006378.1| Ribonuclease HII [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|97189174|sp|Q48F73|RNH2_PSE14 RecName: Full=Ribonuclease HII; Short=RNase HII gi|71558628|gb|AAZ37839.1| Ribonuclease HII (RNase HII) [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157168|gb|EFH98256.1| Ribonuclease HII [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 222 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A Sbjct: 17 DLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWF 76 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ + V+KGDS Sbjct: 77 IARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQLS-VPSAPVVKGDSR 135 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 136 VPAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 195 Query: 203 PLR 205 P+R Sbjct: 196 PVR 198 >gi|152995315|ref|YP_001340150.1| ribonuclease H [Marinomonas sp. MWYL1] gi|189043694|sp|A6VUT6|RNH2_MARMS RecName: Full=Ribonuclease HII; Short=RNase HII gi|150836239|gb|ABR70215.1| Ribonuclease H [Marinomonas sp. MWYL1] Length = 199 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 88/186 (47%), Positives = 120/186 (64%), Gaps = 1/186 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG DE GRG LAG VV AA+ILDP G+ DSKK+S KKRE L+ +I A Sbjct: 12 DLLAGTDEAGRGPLAGEVVAAAVILDPAQPITGLADSKKLSEKKREALFVEIQEKALAYG 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A+ + ID+ NI A++ A+ AV L + P L+DG IP +LPC A AV+KGD+ Sbjct: 72 IARATIEEIDELNILHASMLAMSRAVALLSIEPEYVLVDGNRIPPNLPCSAEAVVKGDAR 131 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR + + YP+YGF+ H GYPTA H + I+ G + IHR +F Sbjct: 132 HAAISAASILAKVTRDRDIVQVAQIYPEYGFEKHKGYPTALHLEAIRLHGITPIHRRSFG 191 Query: 203 PLRNLS 208 P++ + Sbjct: 192 PVKKIL 197 >gi|160892722|ref|ZP_02073512.1| hypothetical protein CLOL250_00252 [Clostridium sp. L2-50] gi|156865763|gb|EDO59194.1| hypothetical protein CLOL250_00252 [Clostridium sp. L2-50] Length = 257 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 88/191 (46%), Positives = 114/191 (59%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE E + + GIDEVGRG LAGPVV AA+IL N +NDSK++S KKREEL Sbjct: 63 FEYERQ--HADCQYICGIDEVGRGPLAGPVVAAAVILPENCDILYLNDSKQLSEKKREEL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++IT A+ I A + ID+ NI A +A+ A+ L V P L D ++ Sbjct: 121 YDEITEKAVAYGIGMADEKLIDQINILNADYEAMRIAIHKLAVKPDLLLNDAVR-IPEVE 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S SIAAASIIAKVTRDRLM + YP YGF + GY + +H + +K Sbjct: 180 IPQVSIIKGDAKSASIAAASIIAKVTRDRLMVAYDEIYPGYGFAKNKGYGSKEHIEALKT 239 Query: 191 KGPSCIHRLTF 201 GP IHR +F Sbjct: 240 IGPCEIHRRSF 250 >gi|206560439|ref|YP_002231203.1| ribonuclease HII [Burkholderia cenocepacia J2315] gi|238693107|sp|B4ECL7|RNH2_BURCJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|198036480|emb|CAR52377.1| ribonuclease HII [Burkholderia cenocepacia J2315] Length = 214 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 120/188 (63%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + Sbjct: 21 FSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDLLYDLIVAR 80 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 + ++SAS ID NI AT+ A+ AVE L V+P A IDG P +A A++ Sbjct: 81 SHAYCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLS-VRAEAIV 139 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP H Sbjct: 140 SGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAH 199 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 200 RRSFAPVR 207 >gi|222054591|ref|YP_002536953.1| Ribonuclease H [Geobacter sp. FRC-32] gi|254807978|sp|B9M597|RNH2_GEOSF RecName: Full=Ribonuclease HII; Short=RNase HII gi|221563880|gb|ACM19852.1| Ribonuclease H [Geobacter sp. FRC-32] Length = 216 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 86/200 (43%), Positives = 120/200 (60%), Gaps = 3/200 (1%) Query: 8 ERPHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E+P E ++MVR + +AG+DE GRG LAGPVV AA+IL ++DSKK++ Sbjct: 10 EKPTLLEFDSMVRCQGYASLAGVDEAGRGPLAGPVVAAAVILPAGIGLSEVDDSKKLTSG 69 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR+EL+E I ++A + + + ID+ NI +ATL A+ A+ L + P L+DG S Sbjct: 70 KRDELFEVIMANALAVGVGLSDAGVIDRINILQATLAAMKEALSLLFIKPDYVLVDGISK 129 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + + KGD SLSIAAASI+AKV RDRLM ++P YGF +H GY H Sbjct: 130 IP-VTIPQKTIKKGDGTSLSIAAASIVAKVHRDRLMVSYDAEFPQYGFAAHKGYGCVDHL 188 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 + I E GP IHR+TF ++ Sbjct: 189 KAIAEYGPCPIHRMTFSGVK 208 >gi|255281039|ref|ZP_05345594.1| ribonuclease HII [Bryantella formatexigens DSM 14469] gi|255268487|gb|EET61692.1| ribonuclease HII [Bryantella formatexigens DSM 14469] Length = 252 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 120/198 (60%), Gaps = 6/198 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + EK + GIDE GRG LAGPVV A+IL +NDSK++S K RE+L Sbjct: 60 LHYER-LYEK-YTYICGIDEAGRGPLAGPVVAGAVILPKGCTIRYLNDSKQLSEKMREQL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ + + AS ID+ NI +AT +A+ A+ L V P L D IP Sbjct: 118 YDEIMERAVAVGVGMASPARIDEINILQATYEAMRDAIGALSVRPDILLNDAVRIP-GTD 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++KGD+ SLSIAAAS+IAKVTRDRLM+ P+YGF +H GY +A H + +++ Sbjct: 177 IEQVPIVKGDAKSLSIAAASVIAKVTRDRLMKEYDALMPEYGFAAHKGYGSAAHIEALRQ 236 Query: 191 KGPSCIHRLTFRPLRNLS 208 GPS IHR +F L+N+ Sbjct: 237 YGPSPIHRASF--LKNIL 252 >gi|78066784|ref|YP_369553.1| ribonuclease HII [Burkholderia sp. 383] gi|97182346|sp|Q39F57|RNH2_BURS3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|77967529|gb|ABB08909.1| Ribonuclease H [Burkholderia sp. 383] Length = 214 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 89/188 (47%), Positives = 120/188 (63%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LYE I + Sbjct: 21 FSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPAQPIDGLDDSKALSAKKRDALYELIVAR 80 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 + ++SAS ID NI AT+ A+ AVE L V+P A IDG P +A A++ Sbjct: 81 SLSYCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLT-VRAEAIV 139 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+++P YGF+ H GY TAKH ++E GP H Sbjct: 140 SGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTAKHLAALREHGPCEAH 199 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 200 RRSFAPVR 207 >gi|37524687|ref|NP_928031.1| ribonuclease HII [Photorhabdus luminescens subsp. laumondii TTO1] gi|39932267|sp|Q7N8N3|RNH2_PHOLL RecName: Full=Ribonuclease HII; Short=RNase HII gi|36784112|emb|CAE12981.1| Ribonuclease HII (RNase HII) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 196 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+RE LY +IT A S Sbjct: 9 SLIAGVDEVGRGPLVGAVVTAAVILDPLQPIVGLADSKKLSEKRREALYLEITEKALCWS 68 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV NL + P LIDG P+ A AVIKGD + Sbjct: 69 LGRAEPAEIDQLNILHATMLAMQRAVANLPISPEYVLIDGNRCPKLPM-PAQAVIKGDGL 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M + +P+YGF H GYPTA H + + + G + HR +F Sbjct: 128 VAEISAASIVAKVTRDREMAELDQLFPEYGFAKHKGYPTAFHLEKLVQLGATEHHRKSFA 187 Query: 203 PLRN 206 P++ Sbjct: 188 PVKR 191 >gi|62185237|ref|YP_220022.1| ribonuclease HII [Chlamydophila abortus S26/3] gi|73917604|sp|Q5L5M0|RNH2_CHLAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|62148304|emb|CAH64071.1| ribonuclease HII [Chlamydophila abortus S26/3] Length = 212 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 115/195 (58%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E V + +AGIDEVGRG LAGPVV A IL + G+NDSKK++ K+R ++ + Sbjct: 18 FEEEVFHEGFSLIAGIDEVGRGPLAGPVVAGACILPRGKVFAGVNDSKKLTPKERGKIRD 77 Query: 74 KITSSA--IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + + + S + ID+ NI +AT +A+ A+ NL + P L+DG +P Sbjct: 78 ILVNDSEVYYGLGVVSVERIDEINILEATKEAMAAAIANLPIHPDFLLVDGLHLPH--KI 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGDS S SIAAASI+AK RD LMR H+ YPDYGFD H GY TA H +K Sbjct: 136 PCKKIIKGDSKSASIAAASILAKEYRDDLMRELHQLYPDYGFDKHKGYGTAAHLAALKAF 195 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P+R Sbjct: 196 GPCDCHRKSFAPVRQ 210 >gi|329942999|ref|ZP_08291773.1| ribonuclease HII family protein [Chlamydophila psittaci Cal10] gi|332287581|ref|YP_004422482.1| ribonuclease HII [Chlamydophila psittaci 6BC] gi|313848155|emb|CBY17156.1| ribonuclease HII [Chlamydophila psittaci RD1] gi|325506940|gb|ADZ18578.1| ribonuclease HII [Chlamydophila psittaci 6BC] gi|328814546|gb|EGF84536.1| ribonuclease HII family protein [Chlamydophila psittaci Cal10] gi|328914832|gb|AEB55665.1| ribonuclease HII [Chlamydophila psittaci 6BC] Length = 212 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 114/195 (58%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E V + +AGIDEVGRG LAGPVV AA IL + G+NDSKK++ K+R ++ + Sbjct: 18 FEEEVFREGFSLIAGIDEVGRGPLAGPVVAAACILPRGKVFAGVNDSKKLTPKERGKIRD 77 Query: 74 KI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S + ID+ NI +AT +A+ A+ NL + P L+DG +P Sbjct: 78 ILVNDPEVYYGLGVVSVERIDEINILEATKEAMAVAIANLPIHPDFLLVDGLHLP--HKI 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +I+GDS S SIAAASIIAK RD LMR H+ YP+YGFD H GY TA H +K Sbjct: 136 PCKKIIQGDSKSASIAAASIIAKEYRDDLMRELHQLYPNYGFDKHKGYGTAAHLAALKAF 195 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P+R Sbjct: 196 GPCDCHRKSFAPVRQ 210 >gi|294508407|ref|YP_003572465.1| Ribonuclease HII [Salinibacter ruber M8] gi|294344735|emb|CBH25513.1| Ribonuclease HII [Salinibacter ruber M8] Length = 200 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 78/194 (40%), Positives = 105/194 (54%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + VAG+DE GRG LAGPVV AA+I+ P I DSK +S +R + Sbjct: 2 LSHERRLWADGYERVAGLDEAGRGCLAGPVVAAAVIMPPQVEITAIQDSKALSEGQRLDA 61 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--- 127 I A+ SI+ S ID NI +A L+A+ A + P L+DG Sbjct: 62 RATIEDEAVAASIARCSPTEIDDCNILQAALEAMRRAASGCRPPPDFVLVDGNQWDRNLV 121 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D P V+KGD+ S SIAAASI+AK RD LMR H+ +P+Y + S+VGYPT +H Sbjct: 122 DAPWPHETVVKGDAKSQSIAAASILAKTERDALMRDLHEAHPEYDWASNVGYPTQQHYDA 181 Query: 188 IKEKGPSCIHRLTF 201 ++E G + HR +F Sbjct: 182 LREHGATPHHRQSF 195 >gi|317052287|ref|YP_004113403.1| ribonuclease H [Desulfurispirillum indicum S5] gi|316947371|gb|ADU66847.1| Ribonuclease H [Desulfurispirillum indicum S5] Length = 201 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 82/190 (43%), Positives = 110/190 (57%), Gaps = 1/190 (0%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + R + +AG+DEVGRG LAGPV AA+IL + I DSKK+S +R L Sbjct: 5 EFDQQWRNCHTQHIAGVDEVGRGPLAGPVCAAAVILPADFSDSRIRDSKKLSALQRRTLS 64 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I S S+++ + ID NI AT A++ A+ L + P L+DG Sbjct: 65 DLIRHSCLAWSVATVDCEVIDTINILHATRLAMWQALSQLPMTPELLLVDGMDNSFFPAV 124 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + VIKGD++SLSIAAASI+AKV RD LM ++YP YGF H GY TA+H+Q I+E Sbjct: 125 RGEKVIKGDNLSLSIAAASIVAKVHRDELMEALDQRYPQYGFARHKGYGTAQHRQAIREH 184 Query: 192 GPSCIHRLTF 201 G HR +F Sbjct: 185 GLCPQHRRSF 194 >gi|157962690|ref|YP_001502724.1| ribonuclease HII [Shewanella pealeana ATCC 700345] gi|189043660|sp|A8H6K2|RNH2_SHEPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|157847690|gb|ABV88189.1| Ribonuclease H [Shewanella pealeana ATCC 700345] Length = 203 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 91/180 (50%), Positives = 118/180 (65%), Gaps = 2/180 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKRE L+E+I A +S+ S Sbjct: 21 AGVDEVGRGPLIGNVVTAAVILDPNNPIEGLNDSKKLSEKKRELLFEQIQQKALSVSVGS 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ ID+ NI AT+ A+ AV L + P S L+DG P D ++ A+IKGD + + Sbjct: 81 ATPAEIDELNILHATMLAMQRAVAGLNIKPSSVLVDGNRTP-DFGVESHAIIKGDGLIDA 139 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASIIAKV RDR M YP+YGF+ H GYPT H + + + G HR +FRP+R Sbjct: 140 ISAASIIAKVVRDREMDALALLYPEYGFEKHKGYPTKAHFEALAQHGVLPEHRKSFRPVR 199 >gi|91784105|ref|YP_559311.1| ribonuclease HII [Burkholderia xenovorans LB400] gi|123358681|sp|Q13XD0|RNH2_BURXL RecName: Full=Ribonuclease HII; Short=RNase HII gi|91688059|gb|ABE31259.1| RNase HII [Burkholderia xenovorans LB400] Length = 248 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 119/184 (64%), Gaps = 3/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYEKITSSA-II 81 V G+DE GRG LAGPVV AA+I DP + G++DSK ++ KKR+ELY+KI A Sbjct: 29 DIVCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDDSKVLTAKKRDELYDKIVDRALAY 88 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I+SAS + ID NI AT+ A+ AVE L V+P IDG P ++ AVI GD+ Sbjct: 89 CIASASVEEIDSLNILHATMLAMKRAVEGLSVVPTLVKIDGNRCPTLS-VRSEAVIGGDA 147 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + SI+AASI+AKVTRDR++ H+ +P YGF++H GY T +H ++E GP HR +F Sbjct: 148 LVKSISAASILAKVTRDRMLLELHQAHPVYGFNAHAGYGTPQHLAALREHGPCEHHRRSF 207 Query: 202 RPLR 205 P+R Sbjct: 208 APVR 211 >gi|152979547|ref|YP_001345176.1| ribonuclease HII [Actinobacillus succinogenes 130Z] gi|171704350|sp|A6VQJ4|RNH2_ACTSZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|150841270|gb|ABR75241.1| Ribonuclease H [Actinobacillus succinogenes 130Z] Length = 202 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 114/195 (58%), Gaps = 5/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR L Sbjct: 3 EFE---YPQGYGLIAGVDEVGRGPLVGAVVTAAVILDPNNPISGLADSKKLSEKKRLVLA 59 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A S+ A + ID+ NI AT+ A+ AV++L+++P L+DG +PE Sbjct: 60 AEIKEKALAWSLGRAEAEEIDELNILHATMLAMRRAVKSLKILPHLVLVDGNRVPELDM- 118 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A A+IKGD I+AASI+AKV RD+ M K++P Y F H GYPT H + + Sbjct: 119 PAQAIIKGDGKVAEISAASILAKVARDQEMETLDKQFPQYEFAKHKGYPTKVHLEKLMRF 178 Query: 192 GPSCIHRLTFRPLRN 206 G HR +F P+R Sbjct: 179 GALPQHRRSFAPVRK 193 >gi|301103372|ref|XP_002900772.1| ribonuclease HII [Phytophthora infestans T30-4] gi|262101527|gb|EEY59579.1| ribonuclease HII [Phytophthora infestans T30-4] Length = 249 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 111/199 (55%), Gaps = 7/199 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E K V G+DE GRG LAGPVV AA + + GI+DSKKI +RE L+E Sbjct: 35 FETRYEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIAGIDDSKKILEPQREALFE 94 Query: 74 KI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN-----LQVIPRSALIDGRSIP 126 + + ++ S Q ID NI +A+L+++ +V Q L+DG +P Sbjct: 95 LLTSHPNITYAVHVNSPQRIDDINILQASLESMTKSVNEVAQQLQQKDKTFVLVDGNKLP 154 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 L A AV+KGDS SIAAASIIAKVTRDRLMR K+P YG H GYPT H Sbjct: 155 PTLELPAEAVVKGDSKVYSIAAASIIAKVTRDRLMREYDVKFPQYGLAQHKGYPTRDHVA 214 Query: 187 VIKEKGPSCIHRLTFRPLR 205 I + GP IHR+TF PL+ Sbjct: 215 AIAKHGPCEIHRMTFAPLK 233 >gi|240947970|ref|ZP_04752396.1| ribonuclease HII [Actinobacillus minor NM305] gi|240297726|gb|EER48187.1| ribonuclease HII [Actinobacillus minor NM305] Length = 196 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 87/192 (45%), Positives = 114/192 (59%), Gaps = 2/192 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 N +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S KKR +L E+I Sbjct: 2 TAFIYPNAKLIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLSEKKRLKLAEEI 61 Query: 76 TSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + A S+ A + ID+ NI AT+ A+ AV L + P L+DG IP A Sbjct: 62 KAKALSWSLGRAEPEEIDQLNILHATMLAMQRAVAGLHIQPDFVLVDGNRIPTLSM-PAQ 120 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 AV+KGDS+ I+AASI+AKV RD M K++P+YGF H GYPT H + + E G + Sbjct: 121 AVVKGDSLVQEISAASILAKVARDLEMDELDKQFPEYGFAKHKGYPTKLHFEKLTELGAT 180 Query: 195 CIHRLTFRPLRN 206 HR +F P+ Sbjct: 181 PFHRKSFAPVAR 192 >gi|254670416|emb|CBA05987.1| Ribonuclease HII [Neisseria meningitidis alpha153] Length = 194 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 106/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAAAWHVAA 65 Query: 87 S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|160939135|ref|ZP_02086486.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC BAA-613] gi|158438098|gb|EDP15858.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC BAA-613] Length = 222 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 114/196 (58%), Gaps = 6/196 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + GIDE GRG LAGPV A++L +NDSKK+S K+REEL+ Sbjct: 25 EYEKEYDA--CTYICGIDEAGRGPLAGPVAAGAVVLPKGCRILYLNDSKKLSEKRREELF 82 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ ++ AS ID+ NI +AT +A+ AV+ L V P L D +IP Sbjct: 83 LEIKEKAVAWNVGLASPARIDEINILQATYEAMREAVKGLSVKPEVLLNDAVTIPGLEGV 142 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ SLSIAAASI+AKVTRD +M + +P YGF H GY TA H I+E Sbjct: 143 -QVPIIKGDAKSLSIAAASILAKVTRDHMMAEYEELFPGYGFAKHKGYGTAAHIAAIREL 201 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR +F +RN+ Sbjct: 202 GPCPIHRRSF--IRNI 215 >gi|22298205|ref|NP_681452.1| ribonuclease H [Thermosynechococcus elongatus BP-1] gi|39932394|sp|Q8DL36|RNH2_THEEB RecName: Full=Ribonuclease HII; Short=RNase HII gi|22294384|dbj|BAC08214.1| ribonuclease H [Thermosynechococcus elongatus BP-1] Length = 214 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 79/193 (40%), Positives = 112/193 (58%), Gaps = 3/193 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKRE 69 E ++ V G+DEVGRG LAGPVV AA+IL + +P + DSK+++ ++R Sbjct: 5 SLIYEQAYWQQGYSRVVGVDEVGRGCLAGPVVAAAVILPVDCVPLPEVRDSKQLTARQRS 64 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+ +I AI I I SAS ID+ NI +AT A+ A+ + ALIDG+ Sbjct: 65 RLFAQIYHQAIAIGIGSASVAEIDQVNILQATYRAMARALGRVAPWDH-ALIDGKLTKTA 123 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + A+I GD S SIA ASIIAKV RDR M ++YP YG++ +VGY T +H+Q + Sbjct: 124 PFERVTAIIGGDRHSYSIACASIIAKVRRDRFMARLARRYPQYGWERNVGYGTPEHRQAL 183 Query: 189 KEKGPSCIHRLTF 201 + G + HR +F Sbjct: 184 DQYGLTPWHRRSF 196 >gi|241668184|ref|ZP_04755762.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876719|ref|ZP_05249429.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842740|gb|EET21154.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 185 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDE GRG L+GPVV A +ILDP G++DSKK++ KKR+ LYE IT+ A +I Sbjct: 2 IILGIDEAGRGPLSGPVVAAGVILDPEKTIDGLSDSKKLTEKKRQSLYEVITAHAKAYTI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S Q ID+ NI +ATL A+ +NL+ L+DG +P + + A++KGDS Sbjct: 62 VEVSPQQIDQLNILQATLKAMNQVADNLKGQFDKVLVDGNKLP-NWDYNSEAIVKGDSKV 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD + + +P YGF H GYPT +H + I++ G IHR +++P Sbjct: 121 QEISAASILAKVHRDNICLEHDRLFPQYGFAKHKGYPTKEHLENIRKYGVLNIHRKSYKP 180 Query: 204 LR 205 ++ Sbjct: 181 IQ 182 >gi|167768005|ref|ZP_02440058.1| hypothetical protein CLOSS21_02548 [Clostridium sp. SS2/1] gi|167710334|gb|EDS20913.1| hypothetical protein CLOSS21_02548 [Clostridium sp. SS2/1] gi|291561007|emb|CBL39807.1| Ribonuclease HII [butyrate-producing bacterium SSC/2] Length = 218 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 115/196 (58%), Gaps = 6/196 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E N + GIDEVGRG AGPVV AA+IL + +NDSKK+S KKRE L Sbjct: 26 FSFEREYG--NHQAICGIDEVGRGPFAGPVVAAAVILPKDCDILYLNDSKKLSEKKRELL 83 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ I I +S + ID+ NI +AT A+ A+ L + P L D + D+ Sbjct: 84 YDEIYEKAVAIGIGMSSEEVIDEINILQATYKAMQQAISKLSIKPDLLLNDAVT-IPDVE 142 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S SIAAASI+AKVTRDR+M+ YP Y F + GY T H + IK+ Sbjct: 143 IEQIPIIKGDAKSASIAAASIVAKVTRDRMMKEYDIIYPGYDFAKNKGYGTKAHIEGIKK 202 Query: 191 KGPSCIHRLTFRPLRN 206 +G IHR TF ++ Sbjct: 203 QGICDIHRRTF--VKK 216 >gi|167624881|ref|YP_001675175.1| ribonuclease HII [Shewanella halifaxensis HAW-EB4] gi|189043659|sp|B0TP69|RNH2_SHEHH RecName: Full=Ribonuclease HII; Short=RNase HII gi|167354903|gb|ABZ77516.1| Ribonuclease H [Shewanella halifaxensis HAW-EB4] Length = 203 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 92/180 (51%), Positives = 119/180 (66%), Gaps = 2/180 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKRE L+E+I A +S+ S Sbjct: 21 AGVDEVGRGPLIGNVVTAAVILDPNNPIEGLNDSKKLSEKKRELLFEQIQQKALSVSVGS 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ ID+ NI AT+ A+ AV L + P S L+DG P D ++ A+IKGD + + Sbjct: 81 ATPAEIDELNILHATMLAMQRAVAGLNIKPTSVLVDGNRTP-DFGVESHAIIKGDGLIDA 139 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASIIAKV RDR M +YP+YGFD H GYPT H + + + G HR +FRP+R Sbjct: 140 ISAASIIAKVVRDREMDALALQYPEYGFDKHKGYPTKAHFEALTQHGVLPEHRKSFRPVR 199 >gi|83816348|ref|YP_446472.1| ribonuclease HII [Salinibacter ruber DSM 13855] gi|97189257|sp|Q2S009|RNH2_SALRD RecName: Full=Ribonuclease HII; Short=RNase HII gi|83757742|gb|ABC45855.1| ribonuclease HII [Salinibacter ruber DSM 13855] Length = 200 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 78/194 (40%), Positives = 105/194 (54%), Gaps = 4/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + VAG+DE GRG LAGPVV AA+I+ P I DSK +S +R + Sbjct: 2 LSHERRLWADGYERVAGLDEAGRGCLAGPVVAAAVIMPPQVEITAIQDSKALSEGQRLDA 61 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--- 127 I A+ SI+ S ID NI +A L+A+ A + P L+DG Sbjct: 62 RATIEDEAVAASIARCSPTEIDDRNILQAALEAMRRAASGCRPPPDFVLVDGNQWDRNLV 121 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D P V+KGD+ S SIAAASI+AK RD LMR H+ +P+Y + S+VGYPT +H Sbjct: 122 DAPWPHETVVKGDAKSQSIAAASILAKTERDALMRDLHEAHPEYDWASNVGYPTQQHYDA 181 Query: 188 IKEKGPSCIHRLTF 201 ++E G + HR +F Sbjct: 182 LREHGATPHHRQSF 195 >gi|88801501|ref|ZP_01117029.1| ribonuclease HII [Polaribacter irgensii 23-P] gi|88782159|gb|EAR13336.1| ribonuclease HII [Polaribacter irgensii 23-P] Length = 196 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 104/186 (55%), Gaps = 1/186 (0%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 + AG DE GRG L GPVV AA+IL + +NDSK +S KKRE + I Sbjct: 4 LNYSGFSLEAGTDEAGRGCLCGPVVAAAVILSKDFTHPFLNDSKLLSEKKREAVRPFIEE 63 Query: 78 SA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 +A S+S Q +D+ N+ +A+++ ++ A+ L++ P ++DG + + Sbjct: 64 NALAFSVSFIWQQEVDEINVLQASIEGMHRAIAGLKITPEFIIVDGNKFRDYKEIPHQTI 123 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGDS LSIAAAS++AK RD M H ++P Y + + GYPT +H+ I+ G + Sbjct: 124 VKGDSKYLSIAAASVLAKTYRDDYMAKIHLEFPMYNWAKNKGYPTKEHRNAIRNFGATEY 183 Query: 197 HRLTFR 202 HR TFR Sbjct: 184 HRKTFR 189 >gi|171318092|ref|ZP_02907261.1| Ribonuclease H [Burkholderia ambifaria MEX-5] gi|171096716|gb|EDT41601.1| Ribonuclease H [Burkholderia ambifaria MEX-5] Length = 217 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 89/188 (47%), Positives = 122/188 (64%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT-S 77 + V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I Sbjct: 21 FSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVAR 80 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 S+ ++SAS ID NI AT+ A+ AVE L V+P A IDG P + +A A++ Sbjct: 81 SSAYCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLM-VRAEAIV 139 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+++P YGF+ HVGY T KH ++E GP +H Sbjct: 140 SGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPKHLAALREHGPCEVH 199 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 200 RRSFAPVR 207 >gi|329296122|ref|ZP_08253458.1| ribonuclease H [Plautia stali symbiont] Length = 208 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 84/184 (45%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R L+++I A S Sbjct: 10 RLIAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRLALFDEIKEKALAWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P + AV+KGDS+ Sbjct: 70 LGRAEPEEIDQLNILHATMLAMQRAVAGLHIAPDFILIDGNRCPALPM-PSQAVVKGDSL 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVT DR M +P YGF H GYPTA H + + + G + HR +F Sbjct: 129 VREISAASIIAKVTCDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQFGATPHHRRSFA 188 Query: 203 PLRN 206 P+RN Sbjct: 189 PVRN 192 >gi|167627613|ref|YP_001678113.1| ribonuclease HII [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189043598|sp|B0TYD6|RNH2_FRAP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|167597614|gb|ABZ87612.1| Ribonuclease H [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 185 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 113/182 (62%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDE GRG L+GPVV A +ILDP G+ DSKK++ KKR+ LYE IT+ A +I Sbjct: 2 IILGIDEAGRGPLSGPVVAAGVILDPEKTIDGLADSKKLTEKKRQSLYEVITAHAKAYTI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S Q ID+ NI +ATL A+ +NL+ L+DG +P + + A++KGDS Sbjct: 62 VEVSPQQIDQLNILQATLKAMNQVADNLKGQFDKVLVDGNKLP-NWDYNSEAIVKGDSKV 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD + + +P YGF H GYPT +H + I++ G IHR +++P Sbjct: 121 QEISAASILAKVHRDNICLEHDRLFPQYGFAKHKGYPTKEHLENIRKYGVLNIHRKSYKP 180 Query: 204 LR 205 ++ Sbjct: 181 IQ 182 >gi|325141206|gb|EGC63706.1| ribonuclease HII [Neisseria meningitidis CU385] Length = 194 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKDQAAAWHVAA 65 Query: 87 S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|77360940|ref|YP_340515.1| RNAse HII [Pseudoalteromonas haloplanktis TAC125] gi|97189191|sp|Q3IIW9|RNH2_PSEHT RecName: Full=Ribonuclease HII; Short=RNase HII gi|76875851|emb|CAI87072.1| RNAse HII [Pseudoalteromonas haloplanktis TAC125] Length = 200 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 80/191 (41%), Positives = 112/191 (58%), Gaps = 2/191 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + N+ +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK++ KKR+ L +I Sbjct: 2 QIERPNVALIAGVDEVGRGPLVGDVVTAAVILDPSKPIAGLADSKKLTDKKRQALAIEIQ 61 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A + S ID+ NI AT+ A+ AVE L P IDG +P+ A A Sbjct: 62 EKALCYAYGRCSPTEIDELNILHATMLAMTRAVEGLSTQPEFVFIDGNRLPKLTM-PAQA 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++KGDS+ I+AASI+AKV RD M K++P+YGF H GYPT H +++ G Sbjct: 121 IVKGDSLVAEISAASILAKVARDNEMVELDKRHPEYGFAGHKGYPTKAHFAALEQYGAIK 180 Query: 196 IHRLTFRPLRN 206 HR +F+P++ Sbjct: 181 EHRKSFKPVQR 191 >gi|253999106|ref|YP_003051169.1| Ribonuclease H [Methylovorus sp. SIP3-4] gi|253985785|gb|ACT50642.1| Ribonuclease H [Methylovorus sp. SIP3-4] Length = 188 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 78/185 (42%), Positives = 112/185 (60%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 + G+DE GRG LAG V AA+IL+P G+ DSKK+S KKR+ L +I A +I Sbjct: 5 IICGVDEAGRGPLAGAVYAAAVILNPARPIPGLADSKKLSEKKRDALTLEIKQHALAWAI 64 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ++ + ID NI +A+L A+ AVE L + P L+DG PE A A++ GDS Sbjct: 65 AHSTVEEIDSINILQASLLAMRRAVEQLGIQPHKLLVDGLHCPEVSMV-AEAIVDGDSKV 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD+ + ++YP YGF H GYPTA H ++ E G S +HR ++ P Sbjct: 124 EAISAASILAKTARDKELYALDQQYPHYGFAKHKGYPTAFHMAMLIEHGVSPVHRRSYAP 183 Query: 204 LRNLS 208 ++ L Sbjct: 184 VKKLL 188 >gi|221233322|ref|YP_002515758.1| ribonuclease HII [Caulobacter crescentus NA1000] gi|239977582|sp|B8GZ34|RNH2_CAUCN RecName: Full=Ribonuclease HII; Short=RNase HII gi|239977583|sp|P0CAW4|RNH2_CAUCR RecName: Full=Ribonuclease HII; Short=RNase HII gi|220962494|gb|ACL93850.1| ribonuclease HII [Caulobacter crescentus NA1000] Length = 211 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 93/201 (46%), Positives = 115/201 (57%), Gaps = 5/201 (2%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P P LE PV G+DE GRG AGPV A+ILDP+ IP G+NDSKK+S Sbjct: 1 MPPGPDMTLE---LACGQAPVCGVDEAGRGPWAGPVSAGAVILDPDRIPKGLNDSKKLSA 57 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 K R L E+I AI + AS + I + NI A A+ AVE L V P AL+DG Sbjct: 58 KARAALEEEIKDVAISWCVGLASIEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDGNY 117 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + C VIKGDS+S SIAAASI+AK RDR+M A YP YGF H GY H Sbjct: 118 AFKLP-CPVKTVIKGDSLSCSIAAASILAKEARDRIMIEADALYPGYGFAGHKGYHAKVH 176 Query: 185 QQVIKEKGPSCIHRLTFRPLR 205 + ++ GPS IHRL + P++ Sbjct: 177 VEGLRRLGPSPIHRLGWAPVK 197 >gi|317498401|ref|ZP_07956696.1| ribonuclease HII [Lachnospiraceae bacterium 5_1_63FAA] gi|316894295|gb|EFV16482.1| ribonuclease HII [Lachnospiraceae bacterium 5_1_63FAA] Length = 218 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 115/196 (58%), Gaps = 6/196 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + + GIDEVGRG AGPVV AA+IL + +NDSKK+S KKRE L Sbjct: 26 FSFEREYGD--HQAICGIDEVGRGPFAGPVVAAAVILPKDCDILYLNDSKKLSEKKRELL 83 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ I I +S + ID+ NI +AT A+ A+ L + P L D + D+ Sbjct: 84 YDEIYEKAVAIGIGMSSEEVIDEINILQATYKAMQQAISKLSIKPDLLLNDAVT-IPDVE 142 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S SIAAASI+AKVTRDR+M+ YP Y F + GY T H + IK+ Sbjct: 143 IEQVPIIKGDAKSASIAAASIVAKVTRDRMMKEYDTIYPGYDFAKNKGYGTKAHIEGIKK 202 Query: 191 KGPSCIHRLTFRPLRN 206 +G IHR TF ++ Sbjct: 203 QGICDIHRRTF--VKK 216 >gi|291614100|ref|YP_003524257.1| ribonuclease H [Sideroxydans lithotrophicus ES-1] gi|291584212|gb|ADE11870.1| Ribonuclease H [Sideroxydans lithotrophicus ES-1] Length = 191 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 82/185 (44%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 + G+DE GRG LAGPV AA+ILD + G+ DSKK+S ++R++L I A ++ Sbjct: 6 LICGVDEAGRGPLAGPVSAAAVILDKSRPIEGLADSKKLSERQRDQLAPLIRERALAWAV 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A + ID+ NI +ATL A+ AV L P+ L+DG P+ + A++KGDS Sbjct: 66 AYAEVEEIDRLNILQATLLAMKRAVLALHTQPQQVLVDGLYCPQ-TGIPSQAIVKGDSKV 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD LM H++YP YGFD H GYPTA H +++ G S +HR +FRP Sbjct: 125 AAISAASILAKTARDELMLKMHEQYPQYGFDGHKGYPTAAHLAALRQHGVSDVHRRSFRP 184 Query: 204 LRNLS 208 +R L Sbjct: 185 VRELL 189 >gi|255069909|ref|XP_002507036.1| ribonuclease HII [Micromonas sp. RCC299] gi|226522311|gb|ACO68294.1| ribonuclease HII [Micromonas sp. RCC299] Length = 262 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 2/200 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E V G+DE GRG LAGPVV AA + + + INDSK+++ ++RE Sbjct: 54 PSRDAERRCWSAGKKIVCGVDEAGRGPLAGPVVAAACVFPEDLVIDAINDSKQMTEEERE 113 Query: 70 ELYEKITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E+YE++ ++ + + H+ ID+ NI +AT+ A+ +VE L LIDG +P Sbjct: 114 EVYEELMANDQVIKSVCVIDHERIDEINILEATMQAMAKSVEGLSTRADWVLIDGNRVPP 173 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L +A A++KGD+ S+ IAAAS++AKVTRDR+M H +YP YGFD H GY H Sbjct: 174 PLIDRAEAIVKGDAKSVCIAAASVLAKVTRDRMMVKIHDEYPVYGFDQHKGYGVKAHMDA 233 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 I + GP HR TF P++ + Sbjct: 234 IHKHGPCPYHRKTFAPMKYM 253 >gi|219871844|ref|YP_002476219.1| ribonuclease HII [Haemophilus parasuis SH0165] gi|219692048|gb|ACL33271.1| ribonuclease HII [Haemophilus parasuis SH0165] Length = 195 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 115/187 (61%), Gaps = 3/187 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDPN G+ DSKK+S K+R L E+I + A S Sbjct: 8 KFIAGVDEVGRGPLVGAVVTAAVILDPNQPIEGLADSKKLSEKRRLALAEEIKAKALCWS 67 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L++ P L+DG IP A AV+KGDS+ Sbjct: 68 LGRAEPDEIDQLNIFHATMLAMQRAVAGLRIQPDFVLVDGNRIPTLPM-PAQAVVKGDSL 126 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD+ M K+YP+YGF H GYPT H + ++ G + HR +F Sbjct: 127 VAEISAASILAKVARDQEMDELDKQYPEYGFAQHKGYPTKLHFEKLESLGVTPYHRKSFA 186 Query: 203 PL-RNLS 208 P+ + L+ Sbjct: 187 PVAQRLT 193 >gi|86605527|ref|YP_474290.1| ribonuclease HII [Synechococcus sp. JA-3-3Ab] gi|97189384|sp|Q2JW45|RNH2_SYNJA RecName: Full=Ribonuclease HII; Short=RNase HII gi|86554069|gb|ABC99027.1| ribonuclease HII [Synechococcus sp. JA-3-3Ab] Length = 221 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 84/207 (40%), Positives = 123/207 (59%), Gaps = 6/207 (2%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GINDSK 61 +P + E + ++ M VAG+DEVGRGALAGPVV AA+IL + P G+ D K Sbjct: 10 DKVVQPSLKWEGSLWQQGMRRVAGVDEVGRGALAGPVVAAAVILPAHLDPEALSGVRDCK 69 Query: 62 KISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 ++ +R E+I A + I SAS ID+ NI +ATL A+ A+ + + ++ Sbjct: 70 QLRPPQRAHWAERIAQVALAVGIGSASAAEIDQLNIRQATLLAMQRALAQVGEVEH--IL 127 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 +L + A++KGD +SLSIAAASI+AKV RD LM+ +YP YG+ ++VGY Sbjct: 128 LDGLPLAELGSRQTALVKGDQLSLSIAAASIVAKVWRDTLMQSWDHQYPGYGWRTNVGYG 187 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 T +H+ ++ GPS HR +F PLR+L Sbjct: 188 TQEHRLALQRLGPSPQHRRSFAPLRDL 214 >gi|120610517|ref|YP_970195.1| ribonuclease HII [Acidovorax citrulli AAC00-1] gi|189043527|sp|A1TN83|RNH2_ACIAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|120588981|gb|ABM32421.1| RNase HII [Acidovorax citrulli AAC00-1] Length = 240 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L+++I + A S Sbjct: 21 GLVAGVDEAGRGPLAGPVVAAAVILDELQPIEGLADSKTLTAARREALFDEIRAKALCCS 80 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ A+ + ID NI +AT+ A+ AV L++ P L+DG +P A A++KGD++ Sbjct: 81 VAEATVEEIDTLNILQATMLAMRRAVAGLRLKPVRVLVDGNRLPPLD-VPAEAIVKGDAL 139 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR H+ YP YGF SH GY TA+H ++ G HR +F Sbjct: 140 VQAISAASILAKVTRDRWCAQLHEAYPHYGFASHKGYGTAEHMAALQAHGACPEHRRSFA 199 Query: 203 PL 204 P+ Sbjct: 200 PV 201 >gi|315652839|ref|ZP_07905813.1| ribonuclease HII [Eubacterium saburreum DSM 3986] gi|315485041|gb|EFU75449.1| ribonuclease HII [Eubacterium saburreum DSM 3986] Length = 214 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 85/190 (44%), Positives = 118/190 (62%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + +AGIDE GRG LAGPVV AA+IL + +NDSKK++ K+R+ L+ Sbjct: 21 EFENKY--SDFEFIAGIDEAGRGPLAGPVVAAAVILPKDIFLPFLNDSKKVTEKRRDVLF 78 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A I AS+ ID+ NI +AT +A+ A++ L+ P L+D D+ Sbjct: 79 DRIKQEALAYGIGIASNVLIDEINILQATYEAMREAIKKLKKTPDILLVDAV-HIPDITI 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD+ S++IAAASI+AKVTRDRLM K YP+YGF + GY TAKH + +KE Sbjct: 138 RQLGIVKGDARSINIAAASILAKVTRDRLMLEYDKIYPEYGFAYNKGYGTAKHIEALKEY 197 Query: 192 GPSCIHRLTF 201 G IHR TF Sbjct: 198 GACDIHRRTF 207 >gi|240850070|ref|YP_002971463.1| ribonuclease HII [Bartonella grahamii as4aup] gi|240267193|gb|ACS50781.1| ribonuclease HII [Bartonella grahamii as4aup] Length = 224 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 96/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 ++P +P+F E ++++ + +AG+DEVGRG LAGPVV AA+ILD ++IP +NDSKK+S Sbjct: 14 NVPLQPNFSCELDLQKQGFFHIAGVDEVGRGPLAGPVVTAAVILDKDHIPNELNDSKKLS 73 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +R LY +I SA +S++S + ID+ NI KATL+A+ + L + L+DGR Sbjct: 74 FLQRNRLYHEILQSALAVSVASLCARTIDQSNIRKATLEAMRRCIIGLAIPAHYVLVDGR 133 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP +L C A A+IKGD S+SIAAASIIAKVTRDR+M + Y YG + HVGY T Sbjct: 134 DIPSELSCPAMALIKGDQRSVSIAAASIIAKVTRDRMMECVGQVYKGYGLEKHVGYATLA 193 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ + + GP +HR +F PL+ Sbjct: 194 HRTALDKYGPIIGLHRYSFAPLK 216 >gi|319793969|ref|YP_004155609.1| ribonuclease h [Variovorax paradoxus EPS] gi|315596432|gb|ADU37498.1| Ribonuclease H [Variovorax paradoxus EPS] Length = 238 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DE GRG LAGPVV AA+ILD G+ DSK ++ +RE L+++I + A S Sbjct: 20 GLLAGVDEAGRGPLAGPVVAAAVILDDTRPIRGLADSKTLTALQRERLHDQILAKALCCS 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID HNI +AT+ A+ AVE L++ P L+DG +P A AV+KGD++ Sbjct: 80 IAQASVEEIDTHNILQATMIAMRRAVEGLRLKPAKVLVDGNRLPTLDVL-AEAVVKGDAL 138 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDRL H ++P YGF H GY T +H + +++ G HR +F Sbjct: 139 VKAISAASILAKVHRDRLCEQLHTEFPHYGFAGHKGYGTPEHLEALQKHGACVHHRRSFS 198 Query: 203 PL 204 P+ Sbjct: 199 PV 200 >gi|258593814|emb|CBE70155.1| Ribonuclease HII (RNase HII) [NC10 bacterium 'Dutch sediment'] Length = 195 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 80/193 (41%), Positives = 108/193 (55%), Gaps = 2/193 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 +E+ +R +AG+DE GRG+LAGPVV AA+IL P G++DSK +S ++RE L Sbjct: 1 MESCLRAAGYRLIAGVDEAGRGSLAGPVVAAAVILSPTCAIKGVDDSKALSAQQRERLDL 60 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I S A+ + + ID NI +AT+ A+ AVE L P LIDG Sbjct: 61 AIMSEAVAVGFGVVQEEMIDALNILQATMLAMRRAVEALNPPPGFVLIDG-DQSPRCAIP 119 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 + GD + SI+AASI+AKV RDR+MR P YGF H GY T++H I G Sbjct: 120 CRLIPSGDRLCFSISAASILAKVARDRIMRAYDLALPHYGFGRHKGYGTSEHLSTIARFG 179 Query: 193 PSCIHRLTFRPLR 205 S IHR +F+ +R Sbjct: 180 VSPIHRKSFKGVR 192 >gi|325133106|gb|EGC55778.1| ribonuclease HII [Neisseria meningitidis M6190] Length = 194 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 106/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAAAWHVAA 65 Query: 87 S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|313667504|ref|YP_004047788.1| ribonuclease HII [Neisseria lactamica ST-640] gi|313004966|emb|CBN86394.1| ribonuclease HII [Neisseria lactamica 020-06] Length = 212 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 106/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L + I + A +A Sbjct: 24 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAKIIKNQAAAWHVAA 83 Query: 87 S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ A++ L V P IDG IPE L A AV+KGDS + Sbjct: 84 AGPEEIASLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 143 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 144 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 203 Query: 206 NLS 208 NL Sbjct: 204 NLL 206 >gi|309379099|emb|CBX22230.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 194 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 106/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L + I + A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAKIIKNQAAAWHVAA 65 Query: 87 S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ A++ L V P IDG IPE L A AV+KGDS + Sbjct: 66 AGPEEIASLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|161870870|ref|YP_001600044.1| ribonuclease HII [Neisseria meningitidis 053442] gi|189043631|sp|A9M3R5|RNH2_NEIM0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|161596423|gb|ABX74083.1| ribonuclease HII [Neisseria meningitidis 053442] Length = 194 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKEQAAAWYVAA 65 Query: 87 S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLDIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|158320503|ref|YP_001513010.1| ribonuclease H [Alkaliphilus oremlandii OhILAs] gi|189043610|sp|A8MHC7|RNH2_ALKOO RecName: Full=Ribonuclease HII; Short=RNase HII gi|158140702|gb|ABW19014.1| Ribonuclease H [Alkaliphilus oremlandii OhILAs] Length = 203 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 114/197 (57%), Gaps = 5/197 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P ++E+ + +A DEVGRG L G V+ AA+I+ + I G+ DSKK+SHKKRE Sbjct: 2 PTIDIESAIWNSGYENIACCDEVGRGCLFGSVLAAAVIMPKDVIIDGVKDSKKLSHKKRE 61 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRS 124 +LYE I + I + + S + IDK NI AT A+ A+ + I I + Sbjct: 62 QLYEIIKEKSLAIGVGTVSSEIIDKINIKNATRLAMKKAILSLKDKDGNIVAPDYILIDA 121 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 D+P AVIKGD + IAAASI+AKV RDRL + +++P+YG + GY T H Sbjct: 122 EEIDVPTPQSAVIKGDDLCHGIAAASIVAKVLRDRLCQRWEEEHPNYGIGQNKGYGTKAH 181 Query: 185 QQVIKEKGPSCIHRLTF 201 ++ +KE GPS +HR +F Sbjct: 182 REALKEHGPSPMHRKSF 198 >gi|255002889|ref|ZP_05277853.1| ribonuclease HII [Anaplasma marginale str. Puerto Rico] Length = 238 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 90/201 (44%), Positives = 123/201 (61%), Gaps = 3/201 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKK 67 P F +E +R + + G+DEVG GA+AGPVV AA+ L + I DSK +S KK Sbjct: 5 PSFLIEDQLRSGTISVIVGVDEVGYGAIAGPVVAAAVYLPERECDYIKDIKDSKALSSKK 64 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REEL+ KIT+ A + A + I++HNI A+ ++ ++NL V L+DG P Sbjct: 65 REELFCKITAHAKYGVGFARVREIEQHNILVASHISM-KTLQNLGVKADLVLVDGSRAPA 123 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDSIS SIAAASIIAKVTRDR MR H++YP+Y ++ + GY T H Q Sbjct: 124 GLPWAVKTIVKGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQNCGYGTKAHMQS 183 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 +K G + HR TF P++ LS Sbjct: 184 LKLYGKTAQHRSTFAPVKQLS 204 >gi|237747799|ref|ZP_04578279.1| ribonuclease HII [Oxalobacter formigenes OXCC13] gi|229379161|gb|EEO29252.1| ribonuclease HII [Oxalobacter formigenes OXCC13] Length = 219 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 123/206 (59%), Gaps = 5/206 (2%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 +S P F+ + + G DE GRG +AGPV AA+ILDP++ G+ DSKK+ Sbjct: 11 SSTLPLPLFDED---YASGVTLFCGADEAGRGPIAGPVFAAAVILDPDHPIAGLKDSKKL 67 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S +R+EL +I A +I+ S + ID+ NI A++ A+ A+E+L + P ALIDG Sbjct: 68 SEHRRDELALEIKQYARAWAIAECSIEEIDELNILHASMLAMKRAIESLAIRPELALIDG 127 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 P+ A A++KGD +I+AASI+AK RD +M H++YP+YGFD H GYPTA Sbjct: 128 NRCPKLA-IAAKAIVKGDDKVPAISAASILAKTARDAVMLDLHRQYPEYGFDRHKGYPTA 186 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNLS 208 H + + G S +HR T+ P+R + Sbjct: 187 YHLEQLSIHGVSPVHRKTYAPVRKIL 212 >gi|152980735|ref|YP_001353734.1| ribonuclease HII [Janthinobacterium sp. Marseille] gi|166225192|sp|A6SZN7|RNH2_JANMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|151280812|gb|ABR89222.1| ribonuclease HII [Janthinobacterium sp. Marseille] Length = 210 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 86/200 (43%), Positives = 120/200 (60%), Gaps = 5/200 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P+ L + + E + G+DE GRG LAGPV AA+ILDP G+ DSKK++ KR+ Sbjct: 6 PNLSLFSFLDE---DIICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLRDSKKLTEVKRD 62 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I A SI+ S + ID NI +AT+ A+ A+E L V+P ALIDG P Sbjct: 63 ALAIEIKQYALSWSIAQCSEEEIDSLNILQATMLAMRRAIEGLHVVPTLALIDGNRCPV- 121 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 ++ A+IKGD +I+AASI+AK RD + + H +YP Y FD H GYPTA H + + Sbjct: 122 TSVRSEAIIKGDDKVQAISAASILAKTARDHALGLLHIQYPHYAFDQHKGYPTALHLERL 181 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 +E G S +HR ++ P+R L Sbjct: 182 REHGVSPVHRKSYAPVRALL 201 >gi|261400117|ref|ZP_05986242.1| ribonuclease HII [Neisseria lactamica ATCC 23970] gi|269210350|gb|EEZ76805.1| ribonuclease HII [Neisseria lactamica ATCC 23970] Length = 194 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 106/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I + A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAAAWHVAA 65 Query: 87 S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ A++ L V P IDG IPE L A AV+KGDS + Sbjct: 66 AGPEEIAGLNILHATMLAMKRAIDGLAVRPEKIFIDGNRIPEHLNIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +++ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALEKYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|86609281|ref|YP_478043.1| ribonuclease HII [Synechococcus sp. JA-2-3B'a(2-13)] gi|97189393|sp|Q2JKK9|RNH2_SYNJB RecName: Full=Ribonuclease HII; Short=RNase HII gi|86557823|gb|ABD02780.1| ribonuclease HII [Synechococcus sp. JA-2-3B'a(2-13)] Length = 213 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 82/205 (40%), Positives = 124/205 (60%), Gaps = 6/205 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---GINDSKKISH 65 RP E + ++ + VAG+DEVGRGALAGPVV AA+IL P G+ DSK++ Sbjct: 6 RPSLIWEGSLWQQGILRVAGVDEVGRGALAGPVVAAAVILPAQMDPKELEGVRDSKQLRP 65 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 ++R + E+I A + + SAS ID+ NI +AT+ A+ A+ ++ P ++ Sbjct: 66 QQRAQWAERIRQVALAVGVGSASAAEIDRLNIRQATVLAMQRALA--KLDPIEHILLDGL 123 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +L + A++KGD ISLSIAAAS++AKV RD LM+ ++YP YG+ ++ GY T +H Sbjct: 124 PLAELGSRQTALVKGDHISLSIAAASVVAKVWRDALMQSWDRQYPGYGWRTNAGYGTREH 183 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209 + ++ GP+ HR +F PL L V Sbjct: 184 RLALQNLGPTPQHRRSFAPLAELKV 208 >gi|313884900|ref|ZP_07818652.1| ribonuclease HII [Eremococcus coleocola ACS-139-V-Col8] gi|312619591|gb|EFR31028.1| ribonuclease HII [Eremococcus coleocola ACS-139-V-Col8] Length = 279 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 85/199 (42%), Positives = 120/199 (60%), Gaps = 5/199 (2%) Query: 12 FELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKRE 69 E + + ++ +AGIDEVGRG LAGPVV AA+IL + F GINDSK++SH++R Sbjct: 76 LVYENDLWQNQSFKYIAGIDEVGRGPLAGPVVTAAVILPQDCAAFIGINDSKQLSHQQRV 135 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E I +A SI+ S Q ID+ NI++AT + AV NL + P L+D ++ + Sbjct: 136 SYAEIIKENALAYSIAIGSAQLIDQVNIYQATRQMMVKAVANLAIQPDYLLLD--AMQIE 193 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 ++IKGD SLSIAAASIIAKV RD++M ++P Y F + GY T H + Sbjct: 194 SSIPQRSIIKGDQKSLSIAAASIIAKVYRDQIMDQYALEFPYYDFQHNKGYGTQNHLAGL 253 Query: 189 KEKGPSCIHRLTFRPLRNL 207 E G S IHR +F P++++ Sbjct: 254 NEFGYSPIHRRSFEPVKSM 272 >gi|16803313|ref|NP_464798.1| ribonuclease HII [Listeria monocytogenes EGD-e] gi|47097416|ref|ZP_00234965.1| ribonuclease HII [Listeria monocytogenes str. 1/2a F6854] gi|254829970|ref|ZP_05234625.1| ribonuclease HII [Listeria monocytogenes 10403S] gi|254898562|ref|ZP_05258486.1| ribonuclease HII [Listeria monocytogenes J0161] gi|254911948|ref|ZP_05261960.1| ribonuclease HII [Listeria monocytogenes J2818] gi|254936274|ref|ZP_05267971.1| rnhB [Listeria monocytogenes F6900] gi|284801658|ref|YP_003413523.1| hypothetical protein LM5578_1411 [Listeria monocytogenes 08-5578] gi|284994800|ref|YP_003416568.1| hypothetical protein LM5923_1364 [Listeria monocytogenes 08-5923] gi|38258623|sp|Q8Y7K4|RNH2_LISMO RecName: Full=Ribonuclease HII; Short=RNase HII gi|16410689|emb|CAC99351.1| rnhB [Listeria monocytogenes EGD-e] gi|47014215|gb|EAL05199.1| ribonuclease HII [Listeria monocytogenes str. 1/2a F6854] gi|258608863|gb|EEW21471.1| rnhB [Listeria monocytogenes F6900] gi|284057220|gb|ADB68161.1| hypothetical protein LM5578_1411 [Listeria monocytogenes 08-5578] gi|284060267|gb|ADB71206.1| hypothetical protein LM5923_1364 [Listeria monocytogenes 08-5923] gi|293589909|gb|EFF98243.1| ribonuclease HII [Listeria monocytogenes J2818] Length = 261 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 121/194 (62%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 EKI AI I + H ID+ NI++AT A+ A+ L P LID + Sbjct: 120 EKIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLIDAMPLRYTEA- 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T KH + Sbjct: 179 -ELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHR++F P++ Sbjct: 238 GICPIHRMSFSPVK 251 >gi|261378092|ref|ZP_05982665.1| ribonuclease HII [Neisseria cinerea ATCC 14685] gi|269145542|gb|EEZ71960.1| ribonuclease HII [Neisseria cinerea ATCC 14685] Length = 194 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L + I A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAKMIKEQAAAWHVAA 65 Query: 87 S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|90580985|ref|ZP_01236786.1| ribonuclease HII [Vibrio angustum S14] gi|90437863|gb|EAS63053.1| ribonuclease HII [Vibrio angustum S14] Length = 203 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR L+++I A S Sbjct: 16 TCIAGVDEVGRGPLVGAVVTAAVILDPNNPIKGLTDSKKLTEKKRNLLFDEIKEKALSWS 75 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + ID NI +AT+ A+ AV L V P LIDG +PE A AV+KGD Sbjct: 76 LGRCEADEIDNLNILQATMVAMQRAVAGLSVQPDYVLIDGNKVPELPMA-AQAVVKGDLR 134 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRDR M I ++P YGF H GYPT H + +++ G HR +F+ Sbjct: 135 VAEISAASIIAKVTRDREMEILDAEFPQYGFAKHKGYPTKAHFEALEQYGAIEQHRKSFK 194 Query: 203 PLRN 206 P++ Sbjct: 195 PVKR 198 >gi|73662831|ref|YP_301612.1| ribonuclease HII [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|97189330|sp|Q49X31|RNH2_STAS1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|72495346|dbj|BAE18667.1| ribonuclease HII [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 256 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 125/197 (63%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + +N + GIDEVGRG LAGPVV A+IL+ N+ G+NDSKK+S K+R + Sbjct: 60 EFENSILAENPDALICGIDEVGRGPLAGPVVTCAVILNKNHHFTGLNDSKKLSAKQRHSI 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 K+ + + AS + ID+ NI++AT A++ A+E L++ P L+D ++ D+ Sbjct: 120 ESKLLNDVYAYAYGYASVEEIDEINIYEATKLAMHRAIEGLRIKPTHLLVD--AMTLDID 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S+SIAAAS++AK RD+ MR +KYP Y F+++VGY T +H IK+ Sbjct: 178 IPQTSLIKGDAKSVSIAAASVLAKEHRDQYMRDLGRKYPGYSFENNVGYGTQQHLDGIKK 237 Query: 191 KGPSCIHRLTFRPLRNL 207 G HR TF P+++L Sbjct: 238 YGILNEHRKTFEPIKSL 254 >gi|207723368|ref|YP_002253767.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2] gi|206588567|emb|CAQ35530.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2] Length = 236 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 75/194 (38%), Positives = 112/194 (57%), Gaps = 5/194 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 ++ + G+DE GRG LAGPV A++L+P G+ DSK ++ KKRE LY++I Sbjct: 20 AAGKRARRILCGVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKKREALYDEIV 79 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLPCQ 132 A ++ A+ + ID+ NI AT+ A+ AV+ V+P +DG P+ Sbjct: 80 EKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQVAFA- 138 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGD++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G Sbjct: 139 VEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGTPQHLAAIERHG 198 Query: 193 PSCIHRLTFRPLRN 206 + HR +F P+R Sbjct: 199 VTPHHRRSFAPVRR 212 >gi|299067473|emb|CBJ38672.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CMR15] Length = 236 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 75/194 (38%), Positives = 112/194 (57%), Gaps = 5/194 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 ++ + G+DE GRG LAGPV A++L+P G+ DSK ++ KKRE LY++I Sbjct: 20 AAGKRARRILCGVDEAGRGPLAGPVTAGAVVLNPRKPIQGLADSKVLTAKKREALYDEIV 79 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLPCQ 132 A ++ A+ + ID+ NI AT+ A+ AV+ V+P +DG P+ Sbjct: 80 EKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQVAFA- 138 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGD++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G Sbjct: 139 VEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHAGYGTPQHLAAIERHG 198 Query: 193 PSCIHRLTFRPLRN 206 + HR +F P+R Sbjct: 199 VTPHHRRSFAPVRR 212 >gi|322435742|ref|YP_004217954.1| Ribonuclease H [Acidobacterium sp. MP5ACTX9] gi|321163469|gb|ADW69174.1| Ribonuclease H [Acidobacterium sp. MP5ACTX9] Length = 247 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 85/211 (40%), Positives = 124/211 (58%), Gaps = 13/211 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---PFGI 57 + C+ P E +R + +AG+DEVGRGAL GPVV AA+IL G+ Sbjct: 17 LVCSDAP-------EQALRYRGARSIAGVDEVGRGALFGPVVAAAVILPAGLASLAKAGL 69 Query: 58 NDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK+++ ++RE L ++I AI +S++ + ID+ NI++AT A+ AVE L + P Sbjct: 70 TDSKQLTREERESLDKRIRRMAIAVSVAEIDAETIDRVNIYQATRLAMLQAVEGLAIAPD 129 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 LID ++ PC + GD++SLSIAAAS++AKV RD LMR +P YG SH Sbjct: 130 HLLID--AMVVSHPCPQTKLFYGDALSLSIAAASVVAKVHRDGLMRELDLVHPQYGLASH 187 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GY T +H++ + E G +HR +F P+R L Sbjct: 188 KGYATPEHRRALLEHGACALHRHSFAPVRAL 218 >gi|302384139|ref|YP_003819962.1| ribonuclease H [Brevundimonas subvibrioides ATCC 15264] gi|302194767|gb|ADL02339.1| Ribonuclease H [Brevundimonas subvibrioides ATCC 15264] Length = 213 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 86/200 (43%), Positives = 115/200 (57%), Gaps = 2/200 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P LE ++ + V G+DE GRG AGPV AA+IL+ +++P GI+DSK ++ +RE Sbjct: 13 PTMALETLLASRVGGRVCGVDEAGRGPWAGPVSAAAVILNADDLPVGIDDSKALTAARRE 72 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I + A+ + AS + ID NI AT A+ A+E L V P +AL+DG Sbjct: 73 ALEIEIKARAVAWGVGFASVEEIDALNILHATGLAMCRAIEALSVSPVAALVDGNYRFRL 132 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 C V+ GD +SLSIAAASI+AK RDRLM YP YGF H GY H Q + Sbjct: 133 P-CDVETVVGGDGLSLSIAAASILAKTARDRLMIEMDDLYPGYGFAGHKGYNAPVHSQAL 191 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 + GP IHR T+ P+R L Sbjct: 192 QTMGPCPIHRRTWAPIRALL 211 >gi|254805764|ref|YP_003083985.1| Ribonuclease HII [Neisseria meningitidis alpha14] gi|254669306|emb|CBA08298.1| Ribonuclease HII [Neisseria meningitidis alpha14] Length = 194 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L E I A +A Sbjct: 6 AGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDTLAEMIKDQAAAWHVAA 65 Query: 87 S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|302344951|ref|YP_003813304.1| ribonuclease HII [Prevotella melaninogenica ATCC 25845] gi|302149166|gb|ADK95428.1| ribonuclease HII [Prevotella melaninogenica ATCC 25845] Length = 200 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 107/176 (60%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSKK++ KKR L E+I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDYQNELLNDSKKLTAKKRYALREEIERDAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + IDK NI A+ A++ A++ L+V P + ++DG + ++KGD LS Sbjct: 73 VTPEEIDKINILNASFLAMHRALDQLKVRPEAVIVDGNRFKPYQDLPSTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y + S++GYPT KH+Q I+E G + HR ++ Sbjct: 133 IAAASILAKTYRDDYMLSLAEEYPQYDWQSNMGYPTKKHRQAIREHGITPYHRKSY 188 >gi|241764771|ref|ZP_04762780.1| Ribonuclease H [Acidovorax delafieldii 2AN] gi|241365761|gb|EER60433.1| Ribonuclease H [Acidovorax delafieldii 2AN] Length = 205 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 82/184 (44%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPVV AA+ILD N G+ DSKK++ +RE L+++I + A S Sbjct: 20 GLVAGVDEAGRGPLAGPVVAAAVILDDLNPIAGLADSKKLTAARREALFDEIRAKALCCS 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID+ NI +ATL A+ AV L++ P A++DG +P A A++ GD++ Sbjct: 80 IAEASVEEIDRLNILQATLLAMRRAVMGLRLKPVRAVVDGNRLPLLDM-PADAIVNGDAL 138 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR + +P YGF H GY TA H ++E G HR TF Sbjct: 139 VPAISAASILAKVHRDRWCVQIDEHFPQYGFAGHKGYGTAVHMAALREHGACVHHRRTFA 198 Query: 203 PLRN 206 P+ Sbjct: 199 PVAR 202 >gi|254828636|ref|ZP_05233323.1| rnhB [Listeria monocytogenes FSL N3-165] gi|258601035|gb|EEW14360.1| rnhB [Listeria monocytogenes FSL N3-165] Length = 261 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 120/194 (61%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 EKI AI I + H ID+ NI++AT A+ A+ L P LID + Sbjct: 120 EKIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLIDAMPLRYTEA- 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM + +KYP Y F +++GY T KH + Sbjct: 179 -ELSLIKGDTKSISIAAASIIAKVTRDRLMLMYDEKYPGYDFANNMGYGTKKHLLGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHR++F P++ Sbjct: 238 GICPIHRMSFSPVK 251 >gi|303235632|ref|ZP_07322239.1| ribonuclease HII [Prevotella disiens FB035-09AN] gi|302484079|gb|EFL47067.1| ribonuclease HII [Prevotella disiens FB035-09AN] Length = 202 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 71/176 (40%), Positives = 105/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL PN +NDSK++S KKR +L I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPNYENELLNDSKQLSEKKRYQLRSIIEKDAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A++ A++ A++ L+ P + ++DG ++KGD LS Sbjct: 73 VTAEEIDEINILNASILAMHRALDGLKTRPEAVIVDGNRFKPYKDLPYSTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M+ ++YP Y + S+ GYPT KH++ I++ G + HR +F Sbjct: 133 IAAASILAKTYRDDYMKGLAEEYPQYDWKSNKGYPTKKHREAIRQHGITPYHRKSF 188 >gi|300113760|ref|YP_003760335.1| ribonuclease H [Nitrosococcus watsonii C-113] gi|299539697|gb|ADJ28014.1| Ribonuclease H [Nitrosococcus watsonii C-113] Length = 195 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 81/184 (44%), Positives = 108/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG LAGPV+ A+ILDP G+ DSK+++ RE L I AI + Sbjct: 8 QKIAGVDEVGRGPLAGPVIAGAVILDPERPISGVKDSKQLTAPARERLAALIQVQAIAWA 67 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI +A+L A+ A+ L V+P L+DGR C A++KGD Sbjct: 68 LGRAEAVEIDQLNIFQASLLAMERAIAALSVVPDLVLVDGR-HCPLTVCPVRAIVKGDQR 126 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++I AASI+AKV RD M + YP YGF +H GYPT H +K GP IHR +FR Sbjct: 127 VMAIGAASIVAKVARDAEMIAFEESYPGYGFGTHKGYPTRAHLAALKALGPCSIHRRSFR 186 Query: 203 PLRN 206 P+R Sbjct: 187 PVRR 190 >gi|218264672|ref|ZP_03478435.1| hypothetical protein PRABACTJOHN_04144 [Parabacteroides johnsonii DSM 18315] gi|218221859|gb|EEC94509.1| hypothetical protein PRABACTJOHN_04144 [Parabacteroides johnsonii DSM 18315] Length = 199 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ +NDSK++S KKR L I AI ++ Sbjct: 13 AGCDEAGRGCLAGPVYAAAVILPPDFHNEDLNDSKQLSEKKRYALRPIIEQEAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI KA+ A++ A++ L+V P LIDG + V+KGD LS Sbjct: 73 VTPEEIDRINILKASFLAMHRAIDGLKVKPEHLLIDGNRFTPYPGVKHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M +YP Y + + GYPT H++ I+E G + HR TF Sbjct: 133 IAAASILAKTYRDDYMNSLDLEYPAYHWKENKGYPTKAHREAIRECGITPYHRKTF 188 >gi|325278078|ref|ZP_08143597.1| ribonuclease HII [Pseudomonas sp. TJI-51] gi|324096785|gb|EGB95112.1| ribonuclease HII [Pseudomonas sp. TJI-51] Length = 207 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE L+++I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPTRPILGLNDSKKLTQAKREALFDEICEKALSFC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI +AT+ A+ AVE L V P+ ALIDG P+ A V+KGDS Sbjct: 72 IARAEVEEIDRLNILQATMLAMQRAVEGLHVTPKLALIDGNRCPKL-SVPAAPVVKGDSQ 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|170699887|ref|ZP_02890917.1| Ribonuclease H [Burkholderia ambifaria IOP40-10] gi|170135209|gb|EDT03507.1| Ribonuclease H [Burkholderia ambifaria IOP40-10] Length = 217 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 89/183 (48%), Positives = 120/183 (65%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + A Sbjct: 26 EIVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVARASAYC 85 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++SAS ID NI AT+ A+ AVE L V+P A IDG P +A A++ GD++ Sbjct: 86 VASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLT-VRAEAIVSGDAL 144 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKVTRDR++ H+++P YGF+ HVGY T KH ++E GP +HR +F Sbjct: 145 VPSISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPKHLAALREHGPCEVHRRSFA 204 Query: 203 PLR 205 P+R Sbjct: 205 PVR 207 >gi|304436821|ref|ZP_07396787.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370193|gb|EFM23852.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 259 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 118/197 (59%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E E+ VAG+DE GRG LAGPV VAA+IL + ++DSKK+S K REEL Sbjct: 52 YAYERCAAERGHCIVAGVDEAGRGPLAGPVAVAAVILPQEYLLLRLDDSKKLSEKVREEL 111 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE+I S A+ + + ID+ NI +AT +Y AV L P+ LID ++P Sbjct: 112 YERIVSDAVSYHVELIDAETIDRMNILEATRKGMYDAVAALLPTPQEVLIDAVALPHLRM 171 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +++KGD+ S SIAAASI+AKVTRDRLM + YP YGF H GY T +H I+ Sbjct: 172 ASQ-SIVKGDAKSASIAAASILAKVTRDRLMLTYDEAYPVYGFAKHKGYGTQEHIDAIRN 230 Query: 191 KGPSCIHRLTFRPLRNL 207 G +HR TF P+R++ Sbjct: 231 YGICPLHRKTFEPIRSM 247 >gi|237800157|ref|ZP_04588618.1| ribonuclease HII [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023014|gb|EGI03071.1| ribonuclease HII [Pseudomonas syringae pv. oryzae str. 1_6] Length = 217 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+L+ +I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLFVEIQEKALCWF 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L V P+ ALIDG P+ + V+KGDS Sbjct: 72 IARAEVEEIDQLNILHATMLAMKRAVEGLSVTPKLALIDGNRCPQLS-VPSAPVVKGDSK 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPTA H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVSRDREMAALELVYPGYGIGGHKGYPTAVHLEALARLGPTPIHRRSFG 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|300311507|ref|YP_003775599.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1] gi|300074292|gb|ADJ63691.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1] Length = 210 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 78/186 (41%), Positives = 115/186 (61%), Gaps = 2/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 + G+DE GRG LAGPV AA+ILDP G+ DSKK++ R+ L +I +SA + Sbjct: 18 EIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLALEIKASALAWA 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++S + Q ID+ NI A++ A+ AVE L +P ALIDG P + ++ A++KGD Sbjct: 78 VASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPV-MSIRSEAIVKGDDK 136 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AK RD + + H YP YGFD H GYPT H ++++ G S +HR ++ Sbjct: 137 VPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGVSPVHRRSYA 196 Query: 203 PLRNLS 208 P++ L Sbjct: 197 PVKALL 202 >gi|313675462|ref|YP_004053458.1| RNAse hii [Marivirga tractuosa DSM 4126] gi|312942160|gb|ADR21350.1| RNase HII [Marivirga tractuosa DSM 4126] Length = 209 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 81/184 (44%), Positives = 110/184 (59%), Gaps = 1/184 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 KN AG DEVGRG LAGPVV +A+IL N + DSKK+S KKR EL + I Sbjct: 7 FNKNNKFEAGCDEVGRGCLAGPVVASAVILPTNFSHPYLTDSKKLSAKKRAELVDVIKKE 66 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 +I +I+ S + ID+ NI KA+ A++ A++ L+ P L+DG VI Sbjct: 67 SIAWAIAECSPEEIDQVNILKASFWAMHKALDQLKQKPDFLLVDGNRFTPYPEIPHECVI 126 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS SIAAASI+AK RD LMR + +P YG++ +VGYPT +H+ I++ G + H Sbjct: 127 KGDSKYFSIAAASILAKEYRDNLMRDLAEIHPHYGWERNVGYPTKQHRAGIQKFGATEHH 186 Query: 198 RLTF 201 R +F Sbjct: 187 RKSF 190 >gi|154497939|ref|ZP_02036317.1| hypothetical protein BACCAP_01919 [Bacteroides capillosus ATCC 29799] gi|150272929|gb|EDN00086.1| hypothetical protein BACCAP_01919 [Bacteroides capillosus ATCC 29799] Length = 210 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E+E +E+ + G DE G G LAGPV A+IL I G+NDSKK++ K+R+ L Sbjct: 10 WEIERSCKERGYQLICGADEAGAGPLAGPVYAGAVILPEGLILEGLNDSKKVTPKRRDRL 69 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I AI +++S + ID NI A + A+ A++ L+ P ALIDG + Sbjct: 70 FEEIQEKAIAWAVASVDEKEIDAINILNARMKAMEMAIQALKPAPDYALIDGNRDK-GIT 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 V+KGD S +IAAASI+AKV+RDR M K YP+Y F+ H GY T H +++ + Sbjct: 129 IAHETVVKGDGRSANIAAASILAKVSRDRYMEEMAKLYPEYEFERHKGYGTKLHFELLMK 188 Query: 191 KGPSCIHRLTFRPLRNL 207 GP IHR +F L+ L Sbjct: 189 YGPCPIHRRSF--LKKL 203 >gi|89898164|ref|YP_515274.1| ribonuclease HII [Chlamydophila felis Fe/C-56] gi|123483565|sp|Q255A9|RNH2_CHLFF RecName: Full=Ribonuclease HII; Short=RNase HII gi|89331536|dbj|BAE81129.1| ribonuclease HII [Chlamydophila felis Fe/C-56] Length = 209 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 89/195 (45%), Positives = 112/195 (57%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E V + +AG+DEVGRG LAGPVV A IL I G+NDSKK+S K+R + + Sbjct: 16 FEEEVFSEGFSIIAGVDEVGRGPLAGPVVAGACILPRGKIFAGVNDSKKLSPKERGRMRD 75 Query: 74 KI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I S + ID+ NI +AT +A+ A+ NL V P L+DG +P Sbjct: 76 ILVNDPDVYYGIGVVSVERIDEINILEATKEAMAVAIANLPVHPDFLLVDGLHLP--HKI 133 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGDS SIAAASIIAK RD LMR H++YPDYGFD H GY TA H +K Sbjct: 134 PCKKIIKGDSKVASIAAASIIAKEYRDDLMRELHQRYPDYGFDKHKGYGTAAHLAALKAF 193 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P+R Sbjct: 194 GPCDCHRKSFAPIRR 208 >gi|50084434|ref|YP_045944.1| ribonuclease HII [Acinetobacter sp. ADP1] gi|73917594|sp|Q6FCT7|RNH2_ACIAD RecName: Full=Ribonuclease HII; Short=RNase HII gi|49530410|emb|CAG68122.1| RNAse HII [Acinetobacter sp. ADP1] Length = 189 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 117/183 (63%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DE GRG L G VV AA+ILDP+N G+NDSKK++ KKRE+L+ +I A SI Sbjct: 1 MIAGVDEAGRGPLVGSVVAAAVILDPHNPIDGLNDSKKLTEKKREKLFVEIQEKALAWSI 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A+H ID+ NI +AT A+ AV+ LQ+ P L+DG IP+ + A++ GD+ Sbjct: 61 AEANHIEIDELNILQATFLAMRRAVDGLQIQPDKVLVDGNQIPKGISIHCEAIVGGDASH 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD+ M++ +KYP +GF H GYPT H Q I G HR ++ P Sbjct: 121 AEISAASILAKVYRDQQMKLLDEKYPLFGFAKHKGYPTKAHFQAIAIHGVVDEHRRSYAP 180 Query: 204 LRN 206 +R Sbjct: 181 VRR 183 >gi|225568157|ref|ZP_03777182.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM 15053] gi|225163110|gb|EEG75729.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM 15053] Length = 219 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 90/194 (46%), Positives = 115/194 (59%), Gaps = 6/194 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV A+IL ++ +NDSKK+S KKRE LY+ Sbjct: 29 YEKEYG--MYRYICGIDEVGRGPLAGPVVAGAVILPKDDPVLYLNDSKKLSEKKREMLYD 86 Query: 74 KITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ + I Q ID+ NI +AT +A+ A+ +L V P L D +IP + Sbjct: 87 EIMEKAVATGIGIVGPQRIDEINILQATYEAMRMAIADLPVQPDILLNDAVTIP-GVEIL 145 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASIIAKVTRDRLM K P Y S+ GY T H +KE G Sbjct: 146 QVPIIKGDAKSVSIAAASIIAKVTRDRLMVEYDKILPGYDLASNKGYGTKAHIAGLKEHG 205 Query: 193 PSCIHRLTFRPLRN 206 PS IHR TF ++N Sbjct: 206 PSPIHRATF--IKN 217 >gi|330685675|gb|EGG97316.1| ribonuclease HII [Staphylococcus epidermidis VCU121] Length = 256 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 118/197 (59%), Gaps = 4/197 (2%) Query: 14 LEAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + +N + GIDEVGRG LAGPVV A+IL+P + G+NDSKK+S K R L Sbjct: 61 YENDILAQNSKAFICGIDEVGRGPLAGPVVACAVILNPGHRYLGLNDSKKVSAKNRAVLN 120 Query: 73 EK-ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ I + A+ ID+ NI++AT A+ A++ L+V P LID ++ D Sbjct: 121 QQLIDGVTDYAYGIATSAEIDEMNIYQATRLAMQRAIDQLKVQPTHLLID--AMTLDNEI 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AK RD M+ K+YP Y F+++VGY T H + I + Sbjct: 179 NQTSIIKGDAKSVSIAAASIMAKEYRDNYMKDIAKQYPGYDFENNVGYGTKAHLEGIAQN 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR TF P++++ Sbjct: 239 GVISEHRKTFEPIKSIL 255 >gi|153874551|ref|ZP_02002729.1| Ribonuclease HII [Beggiatoa sp. PS] gi|152068988|gb|EDN67274.1| Ribonuclease HII [Beggiatoa sp. PS] Length = 197 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 81/187 (43%), Positives = 115/187 (61%), Gaps = 2/187 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG LAGPV+ AA+ILD + G+ DSK +S K+RE L ++I A + Sbjct: 8 SLIAGVDEVGRGPLAGPVIAAAVILDEAHPIVGLADSKTLSEKRREALAKEIRQRALAYA 67 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID NI +A+L A+ AV+NL ++P L+DG L C A+I+GD Sbjct: 68 LGRAEVEEIDHINILQASLLAMQRAVKNLPIVPEHVLVDG-KFCPQLDCSVEAIIQGDKK 126 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD MR YP YGF +H GYPT H++ ++ G + IHR +F Sbjct: 127 VQVISAASILAKVVRDEEMREMDHLYPGYGFAAHKGYPTRAHREALQRLGATVIHRRSFA 186 Query: 203 PLRNLSV 209 P+R + + Sbjct: 187 PVRQVLL 193 >gi|26988337|ref|NP_743762.1| ribonuclease HII [Pseudomonas putida KT2440] gi|37999636|sp|Q88MG6|RNH2_PSEPK RecName: Full=Ribonuclease HII; Short=RNase HII gi|24983086|gb|AAN67226.1|AE016349_7 ribonuclease HII [Pseudomonas putida KT2440] gi|313500227|gb|ADR61593.1| RnhB [Pseudomonas putida BIRD-1] Length = 207 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE L+++I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREALFDEICEKALSFC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID NI +AT+ A+ AVE L + P+ ALIDG P+ A V+KGDS Sbjct: 72 IARAEVEEIDSLNILQATMLAMQRAVEGLHITPKLALIDGNRCPKL-AVPAAPVVKGDSQ 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|148549378|ref|YP_001269480.1| ribonuclease HII [Pseudomonas putida F1] gi|166226641|sp|A5W836|RNH2_PSEP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|148513436|gb|ABQ80296.1| RNase HII [Pseudomonas putida F1] Length = 207 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE L+++I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREALFDEICEKALSFC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID NI +AT+ A+ AVE L + P+ ALIDG P+ A V+KGDS Sbjct: 72 IARAEVEEIDSLNILQATMLAMQRAVEGLHITPKLALIDGNRCPKL-AVPAAPVVKGDSQ 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVTRDREMSAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|298370293|ref|ZP_06981609.1| ribonuclease HII [Neisseria sp. oral taxon 014 str. F0314] gi|298281753|gb|EFI23242.1| ribonuclease HII [Neisseria sp. oral taxon 014 str. F0314] Length = 196 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 83/185 (44%), Positives = 112/185 (60%), Gaps = 1/185 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L I A+ SI Sbjct: 5 LLAGMDEAGRGPLVGSVFAAAVILPERYDLPGLTDSKKLSEKKRDTLAVSIKEQAVSWSI 64 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + I + NI AT+ A+ AV+ L V+P LIDG +P+DL A AV+KGDS Sbjct: 65 ASASPEEIAELNILHATMLAMARAVQGLAVVPDKVLIDGNRVPKDLGVPAEAVVKGDSKI 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M ++YP YGFD H GY TA+H +++ G HR F P Sbjct: 125 IEISAASVLAKTARDAEMYALAERYPQYGFDKHKGYGTAQHLAALQKYGVLPEHRRDFAP 184 Query: 204 LRNLS 208 ++ L Sbjct: 185 VKALL 189 >gi|320527486|ref|ZP_08028667.1| ribonuclease HII [Solobacterium moorei F0204] gi|320132199|gb|EFW24748.1| ribonuclease HII [Solobacterium moorei F0204] Length = 208 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 77/204 (37%), Positives = 104/204 (50%), Gaps = 6/204 (2%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 + P+ E E + GIDE GRG LAGP+ VA ++ I DSK Sbjct: 1 MKNQKICPN-EYEHQYWPLE-KLIIGIDEAGRGPLAGPLTVAGVVFPIGYENPDIYDSKS 58 Query: 63 ISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 IS KKR+ L+E+I A+ I S + IDK+NI++A A+ + Sbjct: 59 ISEKKRDALFEQIQEDALWFEIIQVSPEDIDKYNIYRADQLAMEQIAIHSDAEIVLTDAM 118 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 I KGD S+SIAAASI+AKVTRDR+M K+YP+YGF H GYPT Sbjct: 119 PLIIEGKEIIPLV---KGDQKSISIAAASILAKVTRDRVMLEYDKEYPEYGFAKHKGYPT 175 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLR 205 +H + + G + IHR +F P+R Sbjct: 176 KQHMEALHTYGVTKIHRKSFGPVR 199 >gi|224476370|ref|YP_002633976.1| ribonuclease HII [Staphylococcus carnosus subsp. carnosus TM300] gi|254807988|sp|B9DPH3|RNH2_STACT RecName: Full=Ribonuclease HII; Short=RNase HII gi|222420977|emb|CAL27791.1| putative RNase HII [Staphylococcus carnosus subsp. carnosus TM300] Length = 261 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 120/196 (61%), Gaps = 3/196 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E ++ + + GIDEVGRG LAGPVV A+IL+ ++ +G++DSKK+S R++L E Sbjct: 63 ENILSDNPEAVICGIDEVGRGPLAGPVVACAVILNADHAYYGLDDSKKVSAANRQKLSEA 122 Query: 75 -ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + + A+ + ID NI++AT A+ A+ENL V P LID +P D Sbjct: 123 LIEKTTAYAYGIATPEEIDDLNIYQATQVAMMRAIENLNVTPTHLLIDAMELPLD--IAQ 180 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++IKGD+ S+SIAAASI+AK RD MR ++YP Y F+ +VGY T H + IK G Sbjct: 181 TSIIKGDAKSVSIAAASILAKEHRDTYMRQLAEQYPGYDFEHNVGYGTKAHLEGIKRLGI 240 Query: 194 SCIHRLTFRPLRNLSV 209 HR +F P++++ + Sbjct: 241 IPEHRKSFEPIKSIVL 256 >gi|104783181|ref|YP_609679.1| ribonuclease HII [Pseudomonas entomophila L48] gi|122402183|sp|Q1I640|RNH2_PSEE4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|95112168|emb|CAK16895.1| ribonuclease HII [Pseudomonas entomophila L48] Length = 207 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 114/183 (62%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KR+ L+++I A Sbjct: 12 ELVAGVDEVGRGPLCGAVVTAAVILDPRRPILGLNDSKKLTEAKRDALFDEIREKALSFC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI +AT+ A+ AVE L + P+ ALIDG P+ A V+KGDS Sbjct: 72 IARAEVEEIDRLNILQATMLAMQRAVEGLHITPKLALIDGNRCPKL-AVPAAPVVKGDSQ 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVTRDREMSEFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|83749784|ref|ZP_00946758.1| Ribonuclease HII [Ralstonia solanacearum UW551] gi|207743230|ref|YP_002259622.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum IPO1609] gi|83723541|gb|EAP70745.1| Ribonuclease HII [Ralstonia solanacearum UW551] gi|206594627|emb|CAQ61554.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum IPO1609] Length = 236 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 75/191 (39%), Positives = 112/191 (58%), Gaps = 5/191 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 ++ + G+DE GRG LAGPV A++L+P G+ DSK ++ KKRE LY++I A Sbjct: 23 KRARRILCGVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKKREALYDEIVEKA 82 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLPCQAFA 135 ++ A+ + ID+ NI AT+ A+ AV+ V+P +DG P+ A Sbjct: 83 LAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQVAFA-VEA 141 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++KGD++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G + Sbjct: 142 IVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAGYGTPQHLAAIERHGVTP 201 Query: 196 IHRLTFRPLRN 206 HR +F P+R Sbjct: 202 HHRRSFAPVRR 212 >gi|117928761|ref|YP_873312.1| ribonuclease H [Acidothermus cellulolyticus 11B] gi|189043529|sp|A0LV66|RNH2_ACIC1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|117649224|gb|ABK53326.1| Ribonuclease H [Acidothermus cellulolyticus 11B] Length = 307 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 96/197 (48%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKRE 69 + E + + PVAG+DE GRGA AGP+VVAA+IL D N G+ DSK+++ RE Sbjct: 32 YRYERRLARLGLEPVAGVDEAGRGACAGPLVVAAVILGSDRRNRIAGLADSKQLTPAARE 91 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +Y +I S A+ A + + ++ L Sbjct: 92 SIYNEIISRALAWSVVVIPSSEVDELGVHAANITGMRRAVAGLAVRPAYVLTDGFSIAGL 151 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AV KGD IAAAS++AKVTRDRLM H+K+P Y F +H GY TA H+ + Sbjct: 152 NAPGLAVCKGDEAVACIAAASVVAKVTRDRLMVELHEKFPMYEFATHKGYVTAGHRAALA 211 Query: 190 EKGPSCIHRLTFRPLRN 206 GP HR +F +R Sbjct: 212 RHGPCPEHRRSFVTVRR 228 >gi|217964584|ref|YP_002350262.1| ribonuclease HII (RNase HII) [Listeria monocytogenes HCC23] gi|254807979|sp|B8DHN2|RNH2_LISMH RecName: Full=Ribonuclease HII; Short=RNase HII gi|217333854|gb|ACK39648.1| ribonuclease HII (RNase HII) [Listeria monocytogenes HCC23] gi|307570852|emb|CAR84031.1| rnhB [Listeria monocytogenes L99] Length = 261 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 88/194 (45%), Positives = 125/194 (64%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ LY Sbjct: 60 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPDDFSVVGINDSKQLSEAKRDALY 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I + AI + + H ID+ NI++AT A+ A++ LQ P LID ++P Sbjct: 120 ETIQTEAIAVGVGIIEHNVIDQVNIYEATKLAMRAALDQLQPEPDFVLID--AMPLKYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLHGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHR++F P++ Sbjct: 238 GICPIHRISFAPVK 251 >gi|319762189|ref|YP_004126126.1| ribonuclease h [Alicycliphilus denitrificans BC] gi|330825999|ref|YP_004389302.1| ribonuclease H [Alicycliphilus denitrificans K601] gi|317116750|gb|ADU99238.1| Ribonuclease H [Alicycliphilus denitrificans BC] gi|329311371|gb|AEB85786.1| Ribonuclease H [Alicycliphilus denitrificans K601] Length = 206 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 88/207 (42%), Positives = 126/207 (60%), Gaps = 9/207 (4%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 S+PE+ F+ VAG+DE GRG LAGPVV AA+ILD G+ DSK ++ Sbjct: 6 SLPEQASFD-----WHPG-GLVAGVDEAGRGPLAGPVVAAAVILDDQQPIVGLADSKALT 59 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE L+++I + A S++ AS + ID+ NI +ATL A+ AV+ L++ P AL+DG Sbjct: 60 AARRERLFDEIRAKALCCSVAEASVEEIDRLNILQATLLAMRRAVQGLRLKPTLALVDGN 119 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P A A++KGD+ +I+AASI+AKVTRDR H +YP YGF H GY TA+ Sbjct: 120 RLPRLDM-PAEAIVKGDARVAAISAASILAKVTRDRWCAELHAQYPQYGFAGHKGYGTAE 178 Query: 184 HQQVIKEKGPSCIHRLTFRPL-RNLSV 209 H ++ G HR +F P+ R L++ Sbjct: 179 HLAALQAHGACPQHRRSFAPVARALAL 205 >gi|306821648|ref|ZP_07455246.1| ribonuclease HII [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550393|gb|EFM38386.1| ribonuclease HII [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 263 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 89/199 (44%), Positives = 119/199 (59%), Gaps = 4/199 (2%) Query: 12 FELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 +E E +RE N + IDEVGRG LAGP+VV ++LD N ++DSKK+S KKR+E Sbjct: 67 YEYEKNIRESENKQNILCIDEVGRGPLAGPLVVCGVMLDENPEILYVDDSKKLSEKKRKE 126 Query: 71 LYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 ++E+I + I + ID+ NI AT A+ H +N V L+DG I +D+ Sbjct: 127 IFEQIMQKNIRYEIMTVEVDKIDELNIFNATYRAMSHIAKNFPVKIDHILVDGNQILKDV 186 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AVIKGDS L IA ASIIAKVTRD +M K YP Y F S+ GY T+KH + IK Sbjct: 187 NIDQTAVIKGDSKVLGIAIASIIAKVTRDAMMIDYDKIYPMYDFASNKGYGTSKHIEGIK 246 Query: 190 EKGPSCIHRLTFRPLRNLS 208 + G IHR++F L+N+ Sbjct: 247 KYGTCPIHRMSF--LKNIL 263 >gi|300704217|ref|YP_003745820.1| ribonuclease hII (RNAse hII) [Ralstonia solanacearum CFBP2957] gi|299071881|emb|CBJ43210.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CFBP2957] Length = 236 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 74/194 (38%), Positives = 113/194 (58%), Gaps = 5/194 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 +++ + G+DE GRG LAGPV A++L+P G+ DSK ++ K+RE LY++I Sbjct: 20 AAGKRSRRILCGVDEAGRGPLAGPVTAGAVVLNPRKPIKGLADSKVLTAKRREALYDEIV 79 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLPCQ 132 A ++ A+ + ID+ NI AT+ A+ AV+ V+P +DG P+ Sbjct: 80 EKALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVDGNRCPQVAFA- 138 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGD++ +I+AASI+AKVTRDR + H +P YGFD H GY T +H I+ G Sbjct: 139 VEAIVKGDALVPAISAASILAKVTRDRQLAALHVAFPHYGFDVHAGYGTPQHLAAIERHG 198 Query: 193 PSCIHRLTFRPLRN 206 + HR +F P+R Sbjct: 199 VTPHHRRSFAPVRR 212 >gi|226325139|ref|ZP_03800657.1| hypothetical protein COPCOM_02931 [Coprococcus comes ATCC 27758] gi|225206487|gb|EEG88841.1| hypothetical protein COPCOM_02931 [Coprococcus comes ATCC 27758] Length = 253 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 87/190 (45%), Positives = 119/190 (62%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + + GIDEVGRG LAGPVV A+IL INDSKK+S KR+ELY Sbjct: 62 QYEEKYAD--HAFICGIDEVGRGPLAGPVVAGAVILPKECEILYINDSKKLSAAKRDELY 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ + + AS ID+ NI +AT +A+ A+ NL+V P L D +IP ++ Sbjct: 120 DEIMDKAVAVGLGMASPARIDEINILQATYEAMRQAIGNLKVEPDLLLNDAVTIP-EVVI 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKVTRDRLM K P YGF S+ GY +A+H + ++ Sbjct: 179 PQVPIIKGDAKSVSIAAASIVAKVTRDRLMEEYDKVLPGYGFASNKGYGSAEHIKALQTL 238 Query: 192 GPSCIHRLTF 201 GP+ IHR +F Sbjct: 239 GPTPIHRRSF 248 >gi|119471147|ref|ZP_01613679.1| RNAse HII [Alteromonadales bacterium TW-7] gi|119445803|gb|EAW27085.1| RNAse HII [Alteromonadales bacterium TW-7] Length = 201 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 110/191 (57%), Gaps = 2/191 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + N+ +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ KKR+ L +I Sbjct: 2 QIERPNVTLIAGVDEVGRGPLVGDVVTAAVILDPTKPIAGLADSKKLTDKKRQALATEIK 61 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 +A + S ID NI AT+ A+ AVE L P IDG +P+ A A Sbjct: 62 ENALCYAYGRCSPSEIDDLNILHATMLAMSRAVEGLSTQPEFVFIDGNRLPKLAM-PAQA 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS+ I+AASI+AKV RD M K++P YGF H GYPT H +++ G Sbjct: 121 VVKGDSLVAEISAASILAKVARDDEMLELDKRHPQYGFAGHKGYPTKAHFAALEQYGAID 180 Query: 196 IHRLTFRPLRN 206 HR +F+P++ Sbjct: 181 EHRKSFKPVQR 191 >gi|319939095|ref|ZP_08013459.1| ribonuclease HII [Streptococcus anginosus 1_2_62CV] gi|319812145|gb|EFW08411.1| ribonuclease HII [Streptococcus anginosus 1_2_62CV] Length = 260 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 91/198 (45%), Positives = 125/198 (63%), Gaps = 3/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AGIDEVGRG LAGPVV AA+IL N G+NDSKK+ KK +E+ Sbjct: 58 LRYEKELYATGCQYIAGIDEVGRGPLAGPVVAAAVILPKNYKIKGLNDSKKVPKKKHKEI 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ AI + I +Q ID+ NI++AT A+ AV NL+V P+ LID ++ D+ Sbjct: 118 YQEVLKQAISVGIGIKDNQVIDEVNIYEATKLAMLEAVGNLEVAPQHLLID--AMQLDVQ 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ SLSIAAASI+AKVTRDR+M YP Y F +VGY T H + +K Sbjct: 176 VPQTSIIKGDANSLSIAAASIVAKVTRDRMMTNYELTYPGYDFAHNVGYGTQHHLEGLKR 235 Query: 191 KGPSCIHRLTFRPLRNLS 208 KG + IHR TF P++++ Sbjct: 236 KGITPIHRTTFEPIKSML 253 >gi|254252072|ref|ZP_04945390.1| Ribonuclease H [Burkholderia dolosa AUO158] gi|124894681|gb|EAY68561.1| Ribonuclease H [Burkholderia dolosa AUO158] Length = 215 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 86/188 (45%), Positives = 118/188 (62%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + V G+DE GRG LAGPVV AA+IL+P G++DSK +S KKR+ LYE I Sbjct: 22 FNRPGEIVCGVDEAGRGPLAGPVVAAAVILNPERPIDGLDDSKVLSAKKRDALYELIVER 81 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 + ++SAS ID NI AT+ A+ AVE L ++P A IDG P +A A++ Sbjct: 82 SLAYCVASASVDEIDTLNILHATMLAMKRAVEGLSILPTLAQIDGNRCPTLS-VRAEAIV 140 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+++P YGF+ H GY T KH ++E GP H Sbjct: 141 SGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTEKHLAALREHGPCEAH 200 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 201 RRSFAPVR 208 >gi|154503287|ref|ZP_02040347.1| hypothetical protein RUMGNA_01111 [Ruminococcus gnavus ATCC 29149] gi|153795954|gb|EDN78374.1| hypothetical protein RUMGNA_01111 [Ruminococcus gnavus ATCC 29149] Length = 250 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 120/195 (61%), Gaps = 6/195 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + + GIDEVGRG LAGPVV AA+IL + +NDSKK+S K+REELY Sbjct: 59 QYEEKYSHCDY--ICGIDEVGRGPLAGPVVAAAVILPKDAEILYLNDSKKLSAKRREELY 116 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I AI I I A ID+ NI +AT +A+ A+ L V P L D +IP ++ Sbjct: 117 DEIQEKAIAIGIGMAGPARIDEINILQATYEAMRQAIGQLSVEPEVLLNDAVTIP-EVVI 175 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAAS+IAKVTRDRLM + YGF + GY +A+H +++ Sbjct: 176 PQVPIIKGDAKSVSIAAASVIAKVTRDRLMEEYDQVLAGYGFADNKGYGSAEHIAALRKL 235 Query: 192 GPSCIHRLTFRPLRN 206 GP+ IHR TF ++N Sbjct: 236 GPTPIHRRTF--IKN 248 >gi|120437251|ref|YP_862937.1| ribonuclease HII [Gramella forsetii KT0803] gi|189043601|sp|A0M5H5|RNH2_GRAFK RecName: Full=Ribonuclease HII; Short=RNase HII gi|117579401|emb|CAL67870.1| ribonuclease HII [Gramella forsetii KT0803] Length = 198 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 1/178 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 VAG DE GRG LAGPV AA+IL +NDSK ++ K R L I AI ++ Sbjct: 11 VAGADEAGRGCLAGPVTAAAVILPIEFKNAVLNDSKTLNLKNRNFLKSLIEDEAITYGVA 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + ID+ NI A++ A++ A++ L+ P ++DG +IKGD + Sbjct: 71 HVFMKEIDEINILNASILAMHRALQVLKFDPDHIIVDGNRFKPYQKIPHECIIKGDGKYM 130 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASI+AK RD M H+++PDY + + GYPT +H+ IK+ G + HR +F+ Sbjct: 131 SIAAASILAKTYRDEFMEKIHEEFPDYNWKKNKGYPTKEHRAAIKKYGVTKYHRKSFK 188 >gi|323700101|ref|ZP_08112013.1| Ribonuclease H [Desulfovibrio sp. ND132] gi|323460033|gb|EGB15898.1| Ribonuclease H [Desulfovibrio desulfuricans ND132] Length = 213 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 78/185 (42%), Positives = 104/185 (56%), Gaps = 5/185 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAGPVV A IL G++DSKK++ KRE LY +I A+ + Sbjct: 17 IAGVDEAGRGCLAGPVVAGACILPAEYDLPGLDDSKKLTAAKREALYPRIREQAVAWGLG 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----PCQAFAVIKGD 140 A ID+ NI +AT A+ AV L+ PR IDG + V++GD Sbjct: 77 VAWPWEIDEINILQATFRAMSRAVWALKAEPRFLRIDGDKLIPGHALQRDIPQECVVQGD 136 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 +I+AAS++AK RDRLM ++YP YG H+GY T H I+E GP +HRLT Sbjct: 137 GKVPAISAASVLAKTFRDRLMVRLARRYPGYGLAKHMGYGTEAHVAAIRELGPCRLHRLT 196 Query: 201 FRPLR 205 FR +R Sbjct: 197 FRKVR 201 >gi|307107517|gb|EFN55760.1| hypothetical protein CHLNCDRAFT_23163 [Chlorella variabilis] Length = 311 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 80/196 (40%), Positives = 113/196 (57%), Gaps = 6/196 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E E + ++ VAG+DE GRG LAGPVV AA ++ + G++DSKK+S ++RE Sbjct: 80 PSREFERELWQQGYARVAGVDEAGRGPLAGPVVAAACVVPEHVDIAGMDDSKKLSAQQRE 139 Query: 70 ELYEKITSSAI--ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 LY ++T + + ID NI +A L A+ A L P L+DG +P+ Sbjct: 140 ALYAQLTGHPDVLWAACVVEAEEIDAINILQAALKAMEGAAAGLTAQPDFLLVDGNRLPK 199 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ ++KGDS S IAAAS+IAKVTRDRLM H+ +P Y F H GY +H + Sbjct: 200 ----RSRPIVKGDSKSYCIAAASVIAKVTRDRLMEQHHEHWPQYNFAGHKGYCVPEHVEA 255 Query: 188 IKEKGPSCIHRLTFRP 203 I++ GP +HR TF P Sbjct: 256 IRQHGPCPVHRRTFAP 271 >gi|114567000|ref|YP_754154.1| ribonuclease H [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318000|sp|Q0AWX1|RNH2_SYNWW RecName: Full=Ribonuclease HII; Short=RNase HII gi|114337935|gb|ABI68783.1| RNase HII [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 255 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 2/198 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E +AGIDE GRG +AGPV+ AA+IL + GINDSKK++ KR +L Sbjct: 47 RYEYEAYNNGFRYIAGIDEAGRGPIAGPVMAAAVILSRDFFCPGINDSKKLTALKRSKLA 106 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I AI S+++ Y+DK NI AT +A+ AV+NL P LID D+ Sbjct: 107 AEIKKQAISWSVAAVFPSYLDKVNILNATREAMLLAVKNLSPRPEFLLIDAV-QLPDIDI 165 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + + +IKGDS+S+SIAAASI+AKV RDR+M YP YGF H GY T +H Q + Sbjct: 166 KQYPLIKGDSLSVSIAAASILAKVERDRVMEAFDSLYPGYGFSRHKGYATREHLQSLLRL 225 Query: 192 GPSCIHRLTFRPLRNLSV 209 G +HR++F P++++ + Sbjct: 226 GTCALHRVSFEPVKSMVL 243 >gi|29840412|ref|NP_829518.1| ribonuclease HII [Chlamydophila caviae GPIC] gi|33301616|sp|Q822M7|RNH2_CHLCV RecName: Full=Ribonuclease HII; Short=RNase HII gi|29834761|gb|AAP05396.1| ribonuclease HII [Chlamydophila caviae GPIC] Length = 212 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 88/195 (45%), Positives = 114/195 (58%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E V + +AG+DEVGRG LAGPVV A IL I G+NDSKK++ K+R ++ + Sbjct: 18 FEEEVYGEGFSIIAGVDEVGRGPLAGPVVAGACILPRGKIFAGVNDSKKLTPKERGKIRD 77 Query: 74 KI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I S + ID+ NI +AT +A+ A+ NL V P LIDG +P Sbjct: 78 ILLNDPDVCYGIGVVSVERIDEINILEATKEAMAKAIANLSVHPDFLLIDGLHLPH--KI 135 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGDS S SIAAASIIAK RD LMR H++YP+YGFD H GY TA H ++ Sbjct: 136 PCKKIIKGDSKSASIAAASIIAKEYRDDLMRELHQRYPNYGFDKHKGYGTAAHLAALRAF 195 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F P+R Sbjct: 196 GPCDCHRKSFAPIRQ 210 >gi|94985723|ref|YP_605087.1| ribonuclease H [Deinococcus geothermalis DSM 11300] gi|94556004|gb|ABF45918.1| Ribonuclease H [Deinococcus geothermalis DSM 11300] Length = 224 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 69/200 (34%), Positives = 105/200 (52%), Gaps = 3/200 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + E + + VAG+DE GRGA AGPV VAA+IL + DSK+++ +RE Sbjct: 23 PDWAFEREHWRRGYFRVAGVDEAGRGAWAGPVTVAAVILPGLATEYPFRDSKQLTPAQRE 82 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L ++ A+ ++ A + I++ NI AT A A+ L P++ + D + Sbjct: 83 ALAAQVRQVAVAWAVEHAWPEEIERLNILGATHAAAARALARLDPPPQALVTDYLRLR-- 140 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 A K D++S S+AAAS++AK RDRLM +YP YGF +H GY H+ + Sbjct: 141 TALPLLAPPKADALSYSVAAASLLAKTERDRLMAELDARYPGYGFAAHKGYGAPAHRAAL 200 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 + G S +HR + P+ L Sbjct: 201 ERLGVSELHRRGYAPIARLL 220 >gi|213962065|ref|ZP_03390330.1| ribonuclease HII [Capnocytophaga sputigena Capno] gi|213955418|gb|EEB66735.1| ribonuclease HII [Capnocytophaga sputigena Capno] Length = 198 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 3/186 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV A +IL P+ + DSK+++ K+R L I A+ ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAGVILPPDFKNDLLTDSKQLTEKQRNLLRPIIEREAVAYAVCH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +A++ A++ A+ L P +DG V+KGD + Sbjct: 72 VLPAEIDELNILRASITAMHRAIAQLSPTPEFIAVDGNKFVPYQKIPYACVVKGDGKIQT 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR--P 203 IAAASI+AK RD M +++P+Y + + GYPT +H++ I E G + HR TF+ P Sbjct: 132 IAAASILAKTYRDAYMEDLAQQFPEYHWQQNKGYPTPEHRKAIAEHGATEHHRKTFQLLP 191 Query: 204 LRNLSV 209 + LS+ Sbjct: 192 VEQLSL 197 >gi|313638164|gb|EFS03420.1| ribonuclease HII [Listeria seeligeri FSL S4-171] Length = 261 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 89/194 (45%), Positives = 120/194 (61%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL N GINDSK++S KRE L+ Sbjct: 60 QYENDLYQQGYKFIAGVDEVGRGPLAGPVVAAAVILPENFSVVGINDSKQLSELKRETLF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I AI + + H ID+ NI++AT A+ A++ L P LID ++P Sbjct: 120 ELIKQQAIAVGVGIIEHDVIDEVNIYEATKLAMRMALDELNPSPDFILID--AMPLKYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM+ YP Y F S++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMKDYDVAYPGYDFASNMGYGTKKHLIGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHRL+F P++ Sbjct: 238 GVCPIHRLSFAPVK 251 >gi|134094574|ref|YP_001099649.1| ribonuclease HII [Herminiimonas arsenicoxydans] gi|189043605|sp|A4G4T5|RNH2_HERAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|133738477|emb|CAL61522.1| Ribonuclease HII (RNase HII) [Herminiimonas arsenicoxydans] Length = 211 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 85/186 (45%), Positives = 113/186 (60%), Gaps = 2/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 + G+DE GRG LAGPV AA+ILDP G+ DSKK+S +R+ L I + A S Sbjct: 18 DIICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLCDSKKLSEVRRDALAIDIKAHALSWS 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ S Q ID NI +AT+ A+ AVE L + P ALIDG P + +A A+IKGD Sbjct: 78 IAQCSEQEIDSLNILQATMLAMRRAVEGLHIQPTLALIDGNRCPV-MVVRAEAIIKGDDK 136 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AK RD + + H YP Y FD H GYPTA H + ++E G S +HR ++ Sbjct: 137 VQAISAASILAKTARDHALGLLHIAYPHYAFDQHKGYPTALHLERLREHGVSPVHRKSYA 196 Query: 203 PLRNLS 208 P+R L Sbjct: 197 PVRALL 202 >gi|72162544|ref|YP_290201.1| ribonuclease HII [Thermobifida fusca YX] gi|97189430|sp|Q47MZ1|RNH2_THEFY RecName: Full=Ribonuclease HII; Short=RNase HII gi|71916276|gb|AAZ56178.1| ribonuclease H [Thermobifida fusca YX] Length = 231 Score = 180 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 114/205 (55%), Gaps = 1/205 (0%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 ++ P +++E + VAG+DEVGRGA AGPV+V A I D + P G+ DSK++ Sbjct: 5 SATIPPPTYDVEQELIAAGARVVAGLDEVGRGAWAGPVLVCAAITDGSPPPEGLTDSKRL 64 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 + ++R + E++ S + AS ID+ + +A A + A++ L V P + ++DG Sbjct: 65 TPRRRTAMAEQVRSWVRGYAFGQASPAEIDRLGMTEALRLAAHRALDALPVRPDAVIVDG 124 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + P +K D +S+AAAS++AKV RD LM +YP YGF + GYP+ Sbjct: 125 KHDYVGAPWTVRTHVKADLTCVSVAAASVLAKVHRDALMAELDAEYPGYGFATGAGYPSP 184 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRNL 207 H+ + E GP+ HRL++ L L Sbjct: 185 VHRAALAEHGPTPHHRLSWSYLDRL 209 >gi|126728136|ref|ZP_01743952.1| ribonuclease HII [Sagittula stellata E-37] gi|126711101|gb|EBA10151.1| ribonuclease HII [Sagittula stellata E-37] Length = 219 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 127/196 (64%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + + VAG+DEVGRG LAGPVV AA++L+ +IP G+NDSKK++ K+RE L Sbjct: 24 RFEEALWAQGVNRVAGVDEVGRGPLAGPVVAAAVVLNRASIPDGLNDSKKLTIKRREFLA 83 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 + SA +SI AS + ID+ NI +A+L A+ AVE L P L+DG P + C Sbjct: 84 PLLWQSAEVSIGQASVEEIDETNILQASLLAMRRAVEGLPKPPDHLLVDGNRAPGGISCD 143 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A ++ GD S SIAAASI+AK+ RD +M+ A +YP YG++++ GYPT H+ ++ G Sbjct: 144 ATCIVGGDGRSPSIAAASIVAKIWRDDVMKRAATQYPGYGWETNAGYPTKCHKSALRNLG 203 Query: 193 PSCIHRLTFRPLRNLS 208 + HR +F+P+R++ Sbjct: 204 ATPFHRRSFKPVRDIL 219 >gi|313633474|gb|EFS00298.1| ribonuclease HII [Listeria seeligeri FSL N1-067] Length = 261 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 89/194 (45%), Positives = 120/194 (61%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL N GINDSK++S KRE L+ Sbjct: 60 QYENDLYQQGYKFIAGVDEVGRGPLAGPVVAAAVILPENFSVVGINDSKQLSELKRETLF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I AI + + H ID+ NI++AT A+ A++ L P LID ++P Sbjct: 120 ELIKQQAIAVGVGIVEHDVIDEVNIYEATKLAMRMALDELNPSPDFILID--AMPLKYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM+ YP Y F S++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMKDYDVAYPGYDFASNMGYGTKKHLIGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHRL+F P++ Sbjct: 238 GVCPIHRLSFAPVK 251 >gi|198274378|ref|ZP_03206910.1| hypothetical protein BACPLE_00523 [Bacteroides plebeius DSM 17135] gi|198272744|gb|EDY97013.1| hypothetical protein BACPLE_00523 [Bacteroides plebeius DSM 17135] Length = 200 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 99/176 (56%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P +NDSKK++ K+R EL I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPPGFQNEMLNDSKKLTEKQRYELRTVIEKEATAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + IDK NI A+ A++ AV L+V P+ LIDG ++KGD LS Sbjct: 73 VTPEEIDKINILNASFLAMHRAVSQLKVTPQHLLIDGNRFNPYPGIPHTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H++YP Y + + GYPT KH+ I G + HR++F Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPMYDWKGNKGYPTKKHRAAIAAYGTTPYHRMSF 188 >gi|210615856|ref|ZP_03290818.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787] gi|210150059|gb|EEA81068.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787] Length = 252 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 85/194 (43%), Positives = 115/194 (59%), Gaps = 6/194 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV A+IL + +NDSKK+S K+REELY+ Sbjct: 62 YERKYAH--FSYICGIDEVGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSEKRREELYD 119 Query: 74 KITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I AI + I S ID+ NI +AT +A+ A++ L+ P L D + + Sbjct: 120 EIMEKAIATGIGIVSPARIDEINILQATYEAMRIAIQQLETEPDLLLNDAVT-IPGVTID 178 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASIIAKVTRDRLM P YGF S+ GY +A+H +K G Sbjct: 179 QVPIIKGDAKSVSIAAASIIAKVTRDRLMVQYDDVLPGYGFASNKGYGSAEHITALKTLG 238 Query: 193 PSCIHRLTFRPLRN 206 + IHR++F ++N Sbjct: 239 ATPIHRMSF--IKN 250 >gi|194335200|ref|YP_002016994.1| Ribonuclease H [Pelodictyon phaeoclathratiforme BU-1] gi|238693361|sp|B4SAK8|RNH2_PELPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|194307677|gb|ACF42377.1| Ribonuclease H [Pelodictyon phaeoclathratiforme BU-1] Length = 206 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 112/196 (57%), Gaps = 7/196 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKK 67 + E + + V GIDE GRG LAGPVV AA+I P G +NDSKK+S + Sbjct: 4 DYEWPLWQT-TALVCGIDEAGRGPLAGPVVAAAVIFPRWFRPVGTILERVNDSKKLSAAE 62 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L I ++A +++ + ID+ NI +AT+ A+ AV L + P L+DG Sbjct: 63 RELLAPAIRNAAAFWAVAEVDPETIDQINILQATMLAMNQAVAALPIQPELLLVDGNRFR 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +LP V+KGDS SIAAAS++AK RD LM +YP YGF+ HVGYPT H + Sbjct: 123 TELPIPYETVVKGDSKVFSIAAASVLAKTHRDELMVAYASEYPQYGFERHVGYPTRAHVE 182 Query: 187 VIKEKGPSCIHRLTFR 202 I++ G IHR +FR Sbjct: 183 AIRQHGRCPIHRQSFR 198 >gi|310828460|ref|YP_003960817.1| hypothetical protein ELI_2873 [Eubacterium limosum KIST612] gi|308740194|gb|ADO37854.1| hypothetical protein ELI_2873 [Eubacterium limosum KIST612] Length = 262 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 82/193 (42%), Positives = 116/193 (60%), Gaps = 5/193 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + + G DEVGRG LAGPVV AA+IL ++ ++DSKK+S K RE L + Sbjct: 72 EEGFYGEGFQRIGGSDEVGRGPLAGPVVCAAVILPRDSAILHVDDSKKLSAKMREALDVQ 131 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A ++I + + ID NI +AT A+ AV L P LID +I + + Sbjct: 132 IRAEALSVAIGLRTPEQIDALNILEATKSAMSEAVSQLDPQPDLMLIDALTI--ETQAEV 189 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++ GD+ SIAAASI+AKV RD+LM H++YP+YGFD +VGY TA+H IK+ G Sbjct: 190 RGIVHGDATCYSIAAASIVAKVYRDKLMHAYHEQYPEYGFDRNVGYGTAEHIAAIKKYGL 249 Query: 194 SCIHRLTFRPLRN 206 + IHR +F ++N Sbjct: 250 TPIHRRSF--VKN 260 >gi|212636263|ref|YP_002312788.1| ribonuclease HII [Shewanella piezotolerans WP3] gi|226736824|sp|B8CQ71|RNH2_SHEPW RecName: Full=Ribonuclease HII; Short=RNase HII gi|212557747|gb|ACJ30201.1| Ribonuclease H [Shewanella piezotolerans WP3] Length = 202 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 88/180 (48%), Positives = 118/180 (65%), Gaps = 2/180 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DEVGRG L G VV AA+ILDP+N G+NDSKK+S KKRE L+ +I A +S+ + Sbjct: 21 AGVDEVGRGPLIGNVVTAAVILDPHNPIVGLNDSKKLSEKKRELLFNQIQEKALSVSVGA 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ ID+ NI AT+ A+ AV L + P S L+DG P D Q+ A+IKGD + + Sbjct: 81 ATPAEIDEINILHATMMAMQRAVAGLSIKPTSVLVDGNRCP-DFGMQSHAIIKGDGLIDA 139 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RDR M +YP+YGF+ H GYPT H + + + G HR +FRP+R Sbjct: 140 ISAASIVAKVVRDREMEALAAQYPEYGFEKHKGYPTKAHFEALAKYGILAEHRKSFRPVR 199 >gi|289423531|ref|ZP_06425332.1| ribonuclease HII [Peptostreptococcus anaerobius 653-L] gi|289156033|gb|EFD04697.1| ribonuclease HII [Peptostreptococcus anaerobius 653-L] Length = 266 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 90/190 (47%), Positives = 108/190 (56%), Gaps = 2/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E VAGIDEVGRG LAGPVV A +IL GINDSKKI KKREELY Sbjct: 70 QYENDAYLAGYQLVAGIDEVGRGPLAGPVVAAVVILKKGTKIRGINDSKKIPEKKREELY 129 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A I AS ID+HNI AT A+ A++ L+ P L D + Sbjct: 130 DLILDQALDYGIGMASPSEIDEHNILNATYIAMRRAIDKLKYRPDCLLNDAVR-IPGVDI 188 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGDS S+SI AASI+AKVTRDR+M K+YP Y F S+ GY T +H I+ K Sbjct: 189 HQVPIIKGDSKSISIGAASIVAKVTRDRMMYDYDKEYPGYNFSSNKGYGTNEHYDGIRAK 248 Query: 192 GPSCIHRLTF 201 G IHR +F Sbjct: 249 GKCPIHRESF 258 >gi|166031980|ref|ZP_02234809.1| hypothetical protein DORFOR_01682 [Dorea formicigenerans ATCC 27755] gi|166028433|gb|EDR47190.1| hypothetical protein DORFOR_01682 [Dorea formicigenerans ATCC 27755] Length = 219 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 123/195 (63%), Gaps = 6/195 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E K+ + GIDEVGRG LAGPVV A+IL +++ +NDSKK+S KKRE LY Sbjct: 28 TFEEEY--KDYPYICGIDEVGRGPLAGPVVAGAVILPKDDMILYLNDSKKLSEKKREMLY 85 Query: 73 EKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I + A+ + I AS ID+ NI +AT +A+ A++NL+V P L D +IP+ + Sbjct: 86 DEIMNRAVATGIGMASPARIDEINILQATYEAMRMAIDNLKVRPDILLNDAVTIPQ-VDI 144 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASIIAKVTRDRLM K P Y F S+ GY T H +KE Sbjct: 145 LQVPIIKGDAKSISIAAASIIAKVTRDRLMVEYDKVLPGYDFASNKGYGTKAHIAGLKEL 204 Query: 192 GPSCIHRLTFRPLRN 206 GP+ IHR +F + N Sbjct: 205 GPTPIHRRSF--IHN 217 >gi|172060953|ref|YP_001808605.1| ribonuclease HII [Burkholderia ambifaria MC40-6] gi|238689161|sp|B1YS60|RNH2_BURA4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|171993470|gb|ACB64389.1| Ribonuclease H [Burkholderia ambifaria MC40-6] Length = 217 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 121/188 (64%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + Sbjct: 21 FSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVAR 80 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++SAS ID NI AT+ A+ AVE L V+P A IDG P +A A++ Sbjct: 81 ASAFCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLT-VRAEAIV 139 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+++P YGF+ HVGY T +H ++E GP +H Sbjct: 140 SGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHVGYSTPQHLAALREHGPCEVH 199 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 200 RRSFAPVR 207 >gi|260061789|ref|YP_003194869.1| ribonuclease HII [Robiginitalea biformata HTCC2501] gi|88785921|gb|EAR17090.1| ribonuclease HII [Robiginitalea biformata HTCC2501] Length = 198 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 107/177 (60%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-ISS 85 AG DE GRG LAGPV AA+IL +NDSKK+S +RE L KI A+ + ++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPERFEDPLLNDSKKLSADQRERLAPKILREALATGVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI +A+L A++ A++ L + P + +DG +++GD L+ Sbjct: 72 IPPATIDEINILQASLQAMHRALDQLGMRPEAIAVDGNRFLPYEGIPYQCLVRGDGRYLN 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAAS++AK RD MR H++YP YG+D + GYPT +H++ +++ GPS HR +FR Sbjct: 132 IAAASVLAKTARDARMRELHREYPQYGWDRNKGYPTQEHREALRKHGPSPYHRQSFR 188 >gi|170723229|ref|YP_001750917.1| ribonuclease HII [Pseudomonas putida W619] gi|229564298|sp|B1JBP6|RNH2_PSEPW RecName: Full=Ribonuclease HII; Short=RNase HII gi|169761232|gb|ACA74548.1| Ribonuclease H [Pseudomonas putida W619] Length = 207 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 91/183 (49%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ KRE L+++I + A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEAKREALFDEICAKALSFC 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI +AT+ A+ AVE L V P+ ALIDG P+ A VIKGDS Sbjct: 72 IARAEVEEIDRLNILQATMLAMQRAVEGLSVTPKLALIDGNRCPKLS-VPAAPVIKGDSQ 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKVTRDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VPAIAAASILAKVTRDREMSAFELIYPGYGMGGHKGYPTPVHLEALARLGPTPIHRRSFA 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|51246658|ref|YP_066542.1| ribonuclease HII [Desulfotalea psychrophila LSv54] gi|81641223|sp|Q6AJE5|RNH2_DESPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|50877695|emb|CAG37535.1| probable ribonuclease HII [Desulfotalea psychrophila LSv54] Length = 225 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 84/201 (41%), Positives = 119/201 (59%), Gaps = 3/201 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 + +F LE + +AG DEVGRG LAGPV+ AA+IL + DSK +SHKK Sbjct: 12 PQDNFFLERSLHNLGYDIIAGTDEVGRGPLAGPVIAAAVILPADCDHHLFQDSKILSHKK 71 Query: 68 REELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID--GRS 124 R L++ +T A I I + S + ID+ NI +A+L A+ A+E+L Sbjct: 72 RVHLFQLLTEIDAFIGIGTVSEKIIDEINILQASLLAMKLAIEDLASNCSRPSFLLVDGK 131 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + A+IKG+S S SIAAASI+AKVTRDR M+ H +YP YGF+++ GYPT KH Sbjct: 132 FKVPIDLAQVALIKGESKSASIAAASIVAKVTRDRYMQDLHSQYPQYGFNTNSGYPTKKH 191 Query: 185 QQVIKEKGPSCIHRLTFRPLR 205 ++ I E G +C HR +F+ ++ Sbjct: 192 REAIGEFGITCYHRRSFKGVK 212 >gi|241761783|ref|ZP_04759869.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373697|gb|EER63257.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 215 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 78/200 (39%), Positives = 116/200 (58%), Gaps = 7/200 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E + V G+DEVGRG LAGPV+ A+ L +IP GINDSKK++ ++R Sbjct: 14 PDLSYEDRIE----GVVFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRH 69 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAV---ENLQVIPRSALIDGRSIP 126 L + + + A + A+ ID+ NI +A+L A+ AV ++ Sbjct: 70 LLSDMLHNQADYATGMANVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDI 129 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D P + +IKGDS+SLSIAAASI+AKV RD +M A ++YP YG++ ++GYPT +H++ Sbjct: 130 PDWPWPSLPIIKGDSLSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHRE 189 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I+ P+ HR +F P+R Sbjct: 190 AIQRLKPTKFHRRSFSPIRQ 209 >gi|251797462|ref|YP_003012193.1| ribonuclease H [Paenibacillus sp. JDR-2] gi|247545088|gb|ACT02107.1| Ribonuclease H [Paenibacillus sp. JDR-2] Length = 203 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 116/192 (60%), Gaps = 4/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + +AG+DEVGRG L G VV AA+IL P+ + G+NDSKK+S KKR EL Sbjct: 2 LEYEERLWAEGYSAIAGVDEVGRGCLFGDVVAAAVILPPHLVLEGVNDSKKLSEKKRNEL 61 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I +I + + + ID+ NI +A A+ A+E+L+ P L+D DLP Sbjct: 62 YDIIVDQSIAWAAARVDAETIDRINIKQAARLAMKIALESLKTEPDYFLVDAEK--VDLP 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD+ S SIAAASIIAKVTRDRL + YP+YG H GY T H++ + Sbjct: 120 KPQLAIIKGDATSQSIAAASIIAKVTRDRLCEKEWEQLYPEYGIAIHKGYATKLHRERLL 179 Query: 190 EKGPSCIHRLTF 201 E G S +HR +F Sbjct: 180 EYGASPLHRKSF 191 >gi|294140018|ref|YP_003555996.1| ribonuclease HII [Shewanella violacea DSS12] gi|293326487|dbj|BAJ01218.1| ribonuclease HII [Shewanella violacea DSS12] Length = 218 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 89/187 (47%), Positives = 116/187 (62%), Gaps = 8/187 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK+S KKRE L+ +I A IS+ Sbjct: 21 AGVDEVGRGPLVGNVVTAAVILDPNNPILGLNDSKKLSEKKREALFTEIHEKALSISVGH 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-------CQAFAVIK 138 AS + ID+ NI AT+ A+ AV L++ P L+DG P +A A++K Sbjct: 81 ASPEEIDELNILHATMLAMQRAVAGLEIKPVKVLVDGNRTPIFHHGDNTELAIEAHAIVK 140 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + I+AASIIAKV RDR M + ++P YGF H GYPT H Q +++ G HR Sbjct: 141 GDGLIAGISAASIIAKVIRDREMELLDMEHPQYGFAKHKGYPTKAHFQALEQHGVLAEHR 200 Query: 199 LTFRPLR 205 +FRP+R Sbjct: 201 KSFRPVR 207 >gi|81428604|ref|YP_395604.1| ribonuclease HII (RNase HII) [Lactobacillus sakei subsp. sakei 23K] gi|97182876|sp|Q38WY6|RNH2_LACSS RecName: Full=Ribonuclease HII; Short=RNase HII gi|78610246|emb|CAI55295.1| Ribonuclease HII (RNase HII) [Lactobacillus sakei subsp. sakei 23K] Length = 253 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 83/193 (43%), Positives = 116/193 (60%), Gaps = 4/193 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS-HKKREELYE 73 E + VAGIDEVGRG LAGPVV AA+IL + + +NDSK++S K+E E Sbjct: 62 EKALWPD-YPLVAGIDEVGRGPLAGPVVTAAVILPHDFDLWQVNDSKQLSFKLKQELYRE 120 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 + + +SI AS + ID NI+ AT A+ AV L P L+D ++P D Sbjct: 121 IMAQAVSVSIGIASPERIDTENIYHATELAMGEAVAGLDKQPDYLLVDAMTVPTD--IPQ 178 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD+ S+SIA+ASI+AKV RD+LM ++YP Y +++GY TAKH + E G Sbjct: 179 EKLIKGDARSISIASASIVAKVIRDQLMINYDQQYPGYDLANNMGYGTAKHLAGLAELGV 238 Query: 194 SCIHRLTFRPLRN 206 + IHR +F P++N Sbjct: 239 TPIHRRSFSPVQN 251 >gi|315282093|ref|ZP_07870581.1| ribonuclease HII [Listeria marthii FSL S4-120] gi|313614263|gb|EFR87919.1| ribonuclease HII [Listeria marthii FSL S4-120] Length = 262 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 124/194 (63%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + EA + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYEADLFQQGYQYIAGVDEVGRGPLAGPVVAAAVILPADFSIVGINDSKQLSEAKRDALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I + AI I + H ID+ NI++AT A+ +++ L P LID ++P Sbjct: 120 ETIKAEAIAIGVGIIEHDVIDQVNIYEATKLAMRESLDQLVPKPDFVLID--AMPLKYME 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T H + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKNHLTGLDSI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHRL+F P++ Sbjct: 238 GICPIHRLSFSPVK 251 >gi|191638395|ref|YP_001987561.1| ribonuclease HII [Lactobacillus casei BL23] gi|238693037|sp|B3WEA2|RNH2_LACCB RecName: Full=Ribonuclease HII; Short=RNase HII gi|190712697|emb|CAQ66703.1| Ribonuclease HII (RNase HII) [Lactobacillus casei BL23] gi|327382424|gb|AEA53900.1| hypothetical protein LC2W_1567 [Lactobacillus casei LC2W] gi|327385624|gb|AEA57098.1| hypothetical protein LCBD_1601 [Lactobacillus casei BD-II] Length = 252 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 5/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + VAG+DEVGRG LAGPVV AA+IL + + +NDSK+++ +R LY Sbjct: 58 RYERQLWGT-YEYVAGLDEVGRGPLAGPVVTAAVILPHHFQ-WPVNDSKQLTAHERNVLY 115 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI + I A ++ ID+ NI+ AT A+ AV++L+V P L+D +P D Sbjct: 116 PHILTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVD--L 173 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKV RDRLM + K YP Y F ++GY T H + Sbjct: 174 PQKRLIKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAH 233 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR +F P+R+ Sbjct: 234 GVTPIHRRSFGPVRD 248 >gi|325294887|ref|YP_004281401.1| ribonuclease H [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065335|gb|ADY73342.1| Ribonuclease H [Desulfurobacterium thermolithotrophum DSM 11699] Length = 236 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 82/194 (42%), Positives = 110/194 (56%), Gaps = 2/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E K +AGIDE GRG LAGPVV AA+I + IPF DSKK++ K+R+EL+ Sbjct: 9 QFEREYWNKGYKLIAGIDEAGRGPLAGPVVAAAVIFPQSVIPFLFKDSKKLTEKRRKELF 68 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 KI A + + A IDK NI AT A+ A+ +L V P + D I E Sbjct: 69 FKIFEKAICVGVGFADSLEIDKLNILNATKLAVKRALSSLPVQPDFLITDALEIEEFKD- 127 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++ + KGD S S A AS++AKVTRD +M + +P YGF+ H GYPT H I+E Sbjct: 128 RSLVLTKGDEKSFSCACASVVAKVTRDFIMEKLAELFPAYGFEKHKGYPTKFHISKIEEI 187 Query: 192 GPSCIHRLTFRPLR 205 G S +HR +F +R Sbjct: 188 GISPVHRRSFGRVR 201 >gi|29348821|ref|NP_812324.1| ribonuclease HII [Bacteroides thetaiotaomicron VPI-5482] gi|253568833|ref|ZP_04846243.1| ribonuclease HII [Bacteroides sp. 1_1_6] gi|298387905|ref|ZP_06997454.1| ribonuclease HII [Bacteroides sp. 1_1_14] gi|39932389|sp|Q8A293|RNH2_BACTN RecName: Full=Ribonuclease HII; Short=RNase HII gi|29340727|gb|AAO78518.1| ribonuclease HII [Bacteroides thetaiotaomicron VPI-5482] gi|251840852|gb|EES68933.1| ribonuclease HII [Bacteroides sp. 1_1_6] gi|298259312|gb|EFI02187.1| ribonuclease HII [Bacteroides sp. 1_1_14] Length = 200 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L V P+ LIDG + VIKGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLSVRPQHLLIDGNRFNKYPDIPHTTVIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPFYDWNKNKGYPTKKHRAAIAEHGTTPYHRMTF 188 >gi|160872277|ref|ZP_02062409.1| ribonuclease HII [Rickettsiella grylli] gi|159121076|gb|EDP46414.1| ribonuclease HII [Rickettsiella grylli] Length = 191 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 107/183 (58%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 VAG+DE GRG LAGPV AA+ILD G+ DSK+++ K RE +KI A + Sbjct: 4 QSVAGVDEAGRGPLAGPVFAAAVILDNKKKMTGLKDSKQLTAKSREYFAKKIQEKAKTWA 63 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I A + IDK NI A L A+ AV L +IP L+DG L + A+IKGD Sbjct: 64 IGRAEVEEIDKLNIFHACLLAMKRAVCALALIPDFVLVDG-KHCPQLSVPSKAIIKGDEK 122 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RD M + +YP YGF H GY T +H +K+ GPS IHR +F Sbjct: 123 ITAISAASILAKVHRDANMVLLDAEYPGYGFAQHKGYTTKQHLLALKKLGPSPIHRRSFA 182 Query: 203 PLR 205 P+R Sbjct: 183 PIR 185 >gi|56551900|ref|YP_162739.1| ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4] gi|81355085|sp|Q5NNT2|RNH2_ZYMMO RecName: Full=Ribonuclease HII; Short=RNase HII gi|56543474|gb|AAV89628.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis ZM4] Length = 215 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 78/200 (39%), Positives = 115/200 (57%), Gaps = 7/200 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E + V G+DEVGRG LAGPV+ A+ L +IP GINDSKK++ ++R Sbjct: 14 PDLSYEDRIE----GVVFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRH 69 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAV---ENLQVIPRSALIDGRSIP 126 L + + + A + A ID+ NI +A+L A+ AV ++ Sbjct: 70 LLSDMLHNQADYATGMADVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDI 129 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D P + +IKGDS+SLSIAAASI+AKV RD +M A ++YP YG++ ++GYPT +H++ Sbjct: 130 PDWPWPSLPIIKGDSLSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHRE 189 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I+ P+ HR +F P+R Sbjct: 190 AIQRLKPTKFHRRSFSPIRQ 209 >gi|163786300|ref|ZP_02180748.1| ribonuclease HII [Flavobacteriales bacterium ALC-1] gi|159878160|gb|EDP72216.1| ribonuclease HII [Flavobacteriales bacterium ALC-1] Length = 200 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 74/193 (38%), Positives = 106/193 (54%), Gaps = 12/193 (6%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F+LE G DE GRG LAGPV AA+IL + +NDSK++S K R Sbjct: 9 SFDLE-----------CGTDEAGRGCLAGPVTAAAVILPQSFNNKKLNDSKQLSEKNRNL 57 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I + A ++ ID NI A++ A++H+++ L++ P ++DG Sbjct: 58 LKPIIETEALSFAVHHIFESEIDTINILNASIKAMHHSIDKLKITPNYIIVDGNKFKPYR 117 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 Q +IKGDS LSIAAASI+AK RD M+ H+++P Y + + GYPT +H+ IK Sbjct: 118 DIQHKTIIKGDSKYLSIAAASILAKTYRDEYMKKIHEEFPMYNWKQNKGYPTKEHRAAIK 177 Query: 190 EKGPSCIHRLTFR 202 E G + HR +FR Sbjct: 178 EFGITKYHRKSFR 190 >gi|227535118|ref|ZP_03965167.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187259|gb|EEI67326.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 252 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 5/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + VAG+DEVGRG LAGPVV AA+IL + + +NDSK+++ +R LY Sbjct: 58 RYERQLWGT-YEYVAGLDEVGRGPLAGPVVTAAVILPHHFQ-WPVNDSKQLTAHERNVLY 115 Query: 73 EKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI+ I A ++ ID+ NI+ AT A+ AV++L+V P L+D +P D Sbjct: 116 PHILTEAIVVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVD--L 173 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKV RDRLM + K YP Y F ++GY T H + Sbjct: 174 PQKRLIKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAH 233 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR +F P+R+ Sbjct: 234 GVTPIHRRSFGPVRD 248 >gi|149371924|ref|ZP_01891243.1| ribonuclease HII [unidentified eubacterium SCB49] gi|149355064|gb|EDM43625.1| ribonuclease HII [unidentified eubacterium SCB49] Length = 199 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 75/177 (42%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG L+GPV AA+IL N + DSK++SHKKR EL I +AI + Sbjct: 13 CGTDEAGRGCLSGPVTAAAVILPDNFSHPWLTDSKQLSHKKRMELKPIIEEAAISYGVCH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 IDK NI A++ A++ +++ L P+ IDG VIKGD L Sbjct: 73 VMMDEIDKINILNASILAMHRSIDKLTTAPQFIAIDGNRFKPYAEIPYECVIKGDGKFLH 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M+ H+K+P Y + + GYPT +H+ I+E GPS HR +FR Sbjct: 133 IAAASILAKTHRDLYMQELHEKFPMYNWQKNKGYPTKEHRAAIREHGPSPYHRKSFR 189 >gi|88608875|ref|YP_506577.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama] gi|123491623|sp|Q2GD69|RNH2_NEOSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|88601044|gb|ABD46512.1| ribonuclease HII [Neorickettsia sennetsu str. Miyayama] Length = 195 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 79/194 (40%), Positives = 111/194 (57%), Gaps = 4/194 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 R+ +AG+DEVGRG LAGPVV A+IL N G DSK +S R YE+I S Sbjct: 3 YRKSENGLIAGVDEVGRGCLAGPVVACAVILTENLAIPG--DSKVLSRAVRLSWYEEIIS 60 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--LPCQAFA 135 ++ +I +S + I+ NI ATL A+ A+E L V+P + LIDGR I + + + Sbjct: 61 NSYNAIGMSSVKEIETMNILNATLLAMERALERLPVVPTTVLIDGRDIINNAAKYKEVKS 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+ GD I I AASI+AKVTRDRLM YP Y + + GY T +H + + + G + Sbjct: 121 VVSGDKIYGEIKAASIVAKVTRDRLMEGLDLTYPYYRWKFNKGYGTKEHLEALAKYGVTD 180 Query: 196 IHRLTFRPLRNLSV 209 HR F P++ + + Sbjct: 181 HHRRKFAPVKRMLL 194 >gi|167463784|ref|ZP_02328873.1| Ribonuclease H [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382568|ref|ZP_08056448.1| ribonuclease HII-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153484|gb|EFX45889.1| ribonuclease HII-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 227 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 89/201 (44%), Positives = 115/201 (57%), Gaps = 6/201 (2%) Query: 10 PHF-ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P + E + +AGIDEVGRG L G VV AA+IL ++ INDSKK++ KKR Sbjct: 24 PDLLQKEKELWAAGYTAIAGIDEVGRGCLFGDVVAAAVILPADSYIEEINDSKKLTEKKR 83 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L+E I + A+ + I Q I++ NI +A A+ AVE L + P LID Sbjct: 84 EALFETIMNEAVAVGIGRVDVQTIERINIKQAARLAMKLAVEELALAPDYLLIDAEK--V 141 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DL AVI GD +S SIAAASI+AKVTRDRL YP YG H GY T +H++ Sbjct: 142 DLSFPQEAVIHGDELSQSIAAASIVAKVTRDRLCAEWDGLYPGYGIAGHKGYATKEHREQ 201 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 I+ GP+ +HR F LRN+ Sbjct: 202 IRLLGPTPLHRSLF--LRNIL 220 >gi|167648321|ref|YP_001685984.1| ribonuclease HII [Caulobacter sp. K31] gi|189043575|sp|B0SZF7|RNH2_CAUSK RecName: Full=Ribonuclease HII; Short=RNase HII gi|167350751|gb|ABZ73486.1| Ribonuclease H [Caulobacter sp. K31] Length = 230 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 118/197 (59%), Gaps = 5/197 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P LEA V G+DE GRG AGPV AA+ILDP+ +P G++DSKK+S K R Sbjct: 19 PDMMLEAAC---GPGLVCGVDEAGRGPWAGPVSAAAVILDPSRVPKGLDDSKKLSAKARA 75 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I A+ + AS + I++ NI A A+ A++ L V P AL+DG + Sbjct: 76 VLEIEIKQVAVAWCVGLASIEEIEELNILHAAGLAMCRAIDGLSVKPDIALVDGNYRF-E 134 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LPC VIKGDS+S SIAAASI+AK RDR+M +P YGF SH GY A H + + Sbjct: 135 LPCPIKTVIKGDSLSCSIAAASILAKEARDRIMVEMDALHPGYGFASHKGYHAAIHVEGL 194 Query: 189 KEKGPSCIHRLTFRPLR 205 + GPS IHRL++ P++ Sbjct: 195 RRLGPSPIHRLSWAPVK 211 >gi|154250014|ref|YP_001410839.1| ribonuclease HII [Fervidobacterium nodosum Rt17-B1] gi|154153950|gb|ABS61182.1| Ribonuclease H [Fervidobacterium nodosum Rt17-B1] Length = 245 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 76/182 (41%), Positives = 106/182 (58%), Gaps = 3/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + G+DE GRG + GPVV AA+ D GI DSKK+S KREELYEKI+ SA I Sbjct: 11 IIGVDEAGRGPIFGPVVAAAVFFDEGIYIEGITDSKKLSESKREELYEKISFSAKFGIGI 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL---PCQAFAVIKGDSI 142 A+ ID +NI AT A+ A+E L + + + ++KGD Sbjct: 71 ATPDEIDVYNILHATELAMNRALEILSYYIKIDEGKNIYVDGKDLRLNFPSKCIVKGDEK 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR+M+ K++P+Y H GY T++H +++K+ GP+ HRLTF Sbjct: 131 VYQISAASILAKVTRDRIMKKFDKEFPEYNLSKHKGYATSEHIELLKKYGPTPYHRLTFD 190 Query: 203 PL 204 P+ Sbjct: 191 PV 192 >gi|103486453|ref|YP_616014.1| ribonuclease HII [Sphingopyxis alaskensis RB2256] gi|122985137|sp|Q1GUJ1|RNH2_SPHAL RecName: Full=Ribonuclease HII; Short=RNase HII gi|98976530|gb|ABF52681.1| Ribonuclease H [Sphingopyxis alaskensis RB2256] Length = 198 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 77/185 (41%), Positives = 112/185 (60%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA++L G++DSKK+S ++R L I + I Sbjct: 15 MIVGVDEAGRGPLAGPVVAAAVLLCEG-GIAGLDDSKKLSARRRGALESAIRAQCRWGIG 73 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID+ NI +AT A+ AVE L P L+DG +P QA A++ GD++ Sbjct: 74 EASVEEIDRINILQATFLAMTRAVEALGFEPAEVLVDGNRLPR-WRYQARAIVGGDALHP 132 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AK RDRLM A + YP +G++S++GY TA+H ++ GP+ HR +F P+ Sbjct: 133 CISAASILAKQHRDRLMIAAAQDYPAFGWESNMGYGTAQHLAALRRHGPTPHHRTSFAPV 192 Query: 205 RNLSV 209 L + Sbjct: 193 AQLQL 197 >gi|163867862|ref|YP_001609066.1| ribonuclease HII [Bartonella tribocorum CIP 105476] gi|189043567|sp|A9IQL1|RNH2_BART1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|161017513|emb|CAK01071.1| Ribonuclease HII [Bartonella tribocorum CIP 105476] Length = 224 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 102/203 (50%), Positives = 138/203 (67%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 S+ +P+F E ++++ + VAG+DEVGRG LAGPVV AA+ILD + IP G+NDSKK+S Sbjct: 14 SLSFQPNFLCELGLQKQGFFHVAGVDEVGRGPLAGPVVTAAVILDKDRIPDGLNDSKKLS 73 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +R LY +I SA SI+S + ID+ NI KATL+A+ + L V L+DGR Sbjct: 74 FLQRNRLYHEILQSALAASIASLCARTIDQSNIRKATLEAMRRCIIGLAVPAHYVLVDGR 133 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP +LPC A A+IKGD S+SIAAASIIAKVTRDR+M A + Y +YG + HVGY T Sbjct: 134 DIPSELPCPAMALIKGDQRSVSIAAASIIAKVTRDRMMECAGQVYTNYGLEKHVGYATLA 193 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H++ + + GP +HR +F PL+ Sbjct: 194 HRRALDKYGPIVGLHRYSFAPLK 216 >gi|319401464|gb|EFV89674.1| ribonuclease HII [Staphylococcus epidermidis FRI909] Length = 256 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 119/197 (60%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + N + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S K R L Sbjct: 60 QYENNIMSSNRDALICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + + + AS ID+ NI++AT A+ A+ +L V P LID ++ D+ Sbjct: 120 NQNLKENVYQYAYGIASSVEIDELNIYRATQLAMLRAINHLDVTPTHLLID--AMTLDID 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S+SIAAASI+AK RD+ M+ K++PDYGFD + GY T +H + I Sbjct: 178 IPQTSIIKGDAKSVSIAAASIMAKEYRDQYMKQLSKQFPDYGFDKNAGYGTKQHLEAIDR 237 Query: 191 KGPSCIHRLTFRPLRNL 207 G HR +F P++++ Sbjct: 238 VGFINEHRQSFEPIKSM 254 >gi|16800380|ref|NP_470648.1| ribonuclease HII [Listeria innocua Clip11262] gi|38258629|sp|Q92C79|RNH2_LISIN RecName: Full=Ribonuclease HII; Short=RNase HII gi|16413785|emb|CAC96543.1| rnhB [Listeria innocua Clip11262] Length = 261 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 120/194 (61%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK+++ KR+ L+ Sbjct: 60 RYETDLFKQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDILF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I AI I I H ID+ NI++AT A+ A+E L P LID ++P Sbjct: 120 DVIKEEAISIGIGIIDHDVIDQVNIYEATKIAMRTALEELNPAPDFVLID--AMPLKYSE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDR+M+ + YP Y F +++GY T KH + Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDRMMQQYDELYPGYDFANNMGYGTKKHLNGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHRL+F P++ Sbjct: 238 GICPIHRLSFSPVK 251 >gi|116494884|ref|YP_806618.1| ribonuclease HII [Lactobacillus casei ATCC 334] gi|301066445|ref|YP_003788468.1| ribonuclease HII [Lactobacillus casei str. Zhang] gi|122263698|sp|Q039E6|RNH2_LACC3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|116105034|gb|ABJ70176.1| RNase HII [Lactobacillus casei ATCC 334] gi|300438852|gb|ADK18618.1| Ribonuclease HII [Lactobacillus casei str. Zhang] Length = 252 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 5/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + VAG+DEVGRG LAGPVV AA+IL + + +NDSK+++ +R LY Sbjct: 58 RYERQLWGT-YEYVAGLDEVGRGPLAGPVVTAAVILPHHFQ-WPVNDSKQLTAHERNVLY 115 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI + I A ++ ID+ NI+ AT A+ AV++L+V P L+D +P D Sbjct: 116 PHILTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVD--L 173 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKV RDRLM + K YP Y F ++GY T H + Sbjct: 174 PQKRLIKGDANSISIAAASIVAKVIRDRLMMMYDKIYPGYDFKDNMGYGTKAHLAGLAAH 233 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR +F P+R+ Sbjct: 234 GVTPIHRRSFGPVRD 248 >gi|325139084|gb|EGC61630.1| ribonuclease HII [Neisseria meningitidis ES14902] Length = 194 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRG G V AA+IL G+ DSKK+S KKR+ L E I + A +A Sbjct: 6 AGVDEAGRGPFVGSVFAAAVILPETFDLPGLTDSKKLSEKKRDALAEMIKNQAAAWHVAA 65 Query: 87 S-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + I NI AT+ A+ AV+ L V P IDG IPE L A AV+KGDS + Sbjct: 66 ATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLGIPAEAVVKGDSKIIE 125 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AK RD M +++P YGFD H GY T +H + +K+ G HR F P+R Sbjct: 126 ISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTKQHLEALKQYGVLPEHRRDFAPVR 185 Query: 206 NLS 208 NL Sbjct: 186 NLL 188 >gi|323141923|ref|ZP_08076783.1| ribonuclease HII [Phascolarctobacterium sp. YIT 12067] gi|322413590|gb|EFY04449.1| ribonuclease HII [Phascolarctobacterium sp. YIT 12067] Length = 283 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 80/199 (40%), Positives = 122/199 (61%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +LE + ++ +AG+DE GRG LAGP+V+AA+IL + G+NDSK++S KR+ L Sbjct: 62 LKLERELYDEGCELIAGVDEAGRGPLAGPLVIAAVILPKDVFISGLNDSKQLSAAKRDML 121 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y ++ + A I ++ S ID+ NI+ AT + +ENL P++ALID + Sbjct: 122 YNEVMAKALDIEVNIVSVSNIDELNIYYATQQGMAQVLENLHCRPQAALIDAM-PVKVPG 180 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +V+ GD++S SIAAASIIAKVTRDR+M YP YGF + GY + H Q + E Sbjct: 181 MKIESVVHGDALSASIAAASIIAKVTRDRIMERLDLVYPAYGFAHNKGYGSGAHMQAVSE 240 Query: 191 KGPSCIHRLTFRPLRNLSV 209 G + HR +F P++++ + Sbjct: 241 LGATRWHRRSFEPVKSMQL 259 >gi|239631517|ref|ZP_04674548.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525982|gb|EEQ64983.1| ribonuclease HII [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 252 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 119/195 (61%), Gaps = 5/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + VAG+DEVGRG LAGPVV AA+IL + + +NDSK+++ +R LY Sbjct: 58 RYERQLWGT-YEYVAGLDEVGRGPLAGPVVTAAVILPHHFQ-WPVNDSKQLTAHERNVLY 115 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI + I A ++ ID+ NI+ AT A+ AV++L+V P L+D +P D Sbjct: 116 PHILTEAIAVGIGVADNRTIDRENIYHATELAMAQAVDHLRVAPECLLVDAMHVPVD--L 173 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKV RDRLM++ K YP Y F ++GY T H + Sbjct: 174 PQKRLIKGDANSISIAAASIVAKVIRDRLMKMYDKIYPGYDFKDNMGYGTKAHLAGLAAH 233 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR +F P+R+ Sbjct: 234 GVTPIHRRSFGPVRD 248 >gi|149196242|ref|ZP_01873297.1| ribonuclease HII [Lentisphaera araneosa HTCC2155] gi|149140503|gb|EDM28901.1| ribonuclease HII [Lentisphaera araneosa HTCC2155] Length = 209 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 83/204 (40%), Positives = 119/204 (58%), Gaps = 4/204 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKIS 64 +PE F E R + G+DEVGRG LAGPVV A I+ + P G++DSKK+S Sbjct: 1 MPEPDMFFFEEHYRLLGFQAIGGVDEVGRGPLAGPVVAACCIIREGVVLPEGVDDSKKLS 60 Query: 65 HKKREELYEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 KKR +Y+++ ++ + ID+ NI +A+ A+ AV+ ++V P LIDG Sbjct: 61 RKKRRLIYDQLLEVEGVNYALGIVEAEEIDEINILQASHLAMRKAVKAMKVKPDYLLIDG 120 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + +++KGDS S+SIAAASI+AK RD LM KKYP+YGF+ H+GY T Sbjct: 121 L-PVPGFEQDSRSIVKGDSRSVSIAAASILAKEFRDDLMIEYSKKYPEYGFEKHMGYGTK 179 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206 H + +K GP +HR +F P+R Sbjct: 180 LHMEALKNCGPCPLHRRSFAPVRK 203 >gi|296444554|ref|ZP_06886518.1| Ribonuclease H [Methylosinus trichosporium OB3b] gi|296257822|gb|EFH04885.1| Ribonuclease H [Methylosinus trichosporium OB3b] Length = 200 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 96/199 (48%), Positives = 126/199 (63%), Gaps = 2/199 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 PHF LE + +WPVAG+DE GRG LAGPV AA+ILDP +P G++DSK ++ + R Sbjct: 2 PPHFRLETRLLRDGLWPVAGVDEAGRGPLAGPVAAAAVILDPRRLPEGVDDSKALTAEAR 61 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 +E+I +SA I ++ S + ID NI +ATL A+ AV L + PR ALIDG P Sbjct: 62 AAAFERIAASALAIGVAFVSAEEIDAMNIRQATLAAMARAVAALSLAPRHALIDGNDPPS 121 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 C A A++KGD+ LSIAAASI+AKV RDR MR + YP YGF ++ GY T +H Sbjct: 122 L-ACPAEAIVKGDASCLSIAAASIVAKVMRDRQMRRLAELYPAYGFAANAGYGTKEHLAA 180 Query: 188 IKEKGPSCIHRLTFRPLRN 206 I GP+ HR +F P+R Sbjct: 181 IAALGPTPHHRTSFSPMRR 199 >gi|115352089|ref|YP_773928.1| ribonuclease HII [Burkholderia ambifaria AMMD] gi|122322850|sp|Q0BE29|RNH2_BURCM RecName: Full=Ribonuclease HII; Short=RNase HII gi|115282077|gb|ABI87594.1| Ribonuclease H [Burkholderia ambifaria AMMD] Length = 217 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 121/188 (64%), Gaps = 2/188 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + V G+DE GRG LAGPVV AA+ILDP G++DSK +S KKR+ LY+ I + Sbjct: 21 FSRPDEIVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKALSAKKRDALYDLIVAR 80 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++SAS ID NI AT+ A+ AVE L V+P A IDG P +A A++ Sbjct: 81 ASAFCVASASVDEIDTLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLT-VRAEAIV 139 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD++ SI+AASI+AKVTRDR++ H+++P YGF+ HVGY T +H ++E GP +H Sbjct: 140 SGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNMHVGYSTPQHLAALREHGPCEVH 199 Query: 198 RLTFRPLR 205 R +F P+R Sbjct: 200 RRSFAPVR 207 >gi|298207692|ref|YP_003715871.1| putative ribonuclease HII [Croceibacter atlanticus HTCC2559] gi|83850329|gb|EAP88197.1| putative ribonuclease HII [Croceibacter atlanticus HTCC2559] Length = 199 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA+IL + +NDSKK++HK+R+ L I + A+ S+ Sbjct: 13 CGTDEAGRGCLAGPVTAAAVILPQDFNNPVLNDSKKLTHKQRDLLRPIIETEAVSFSVIH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 IDK NI A++ + ++ +LQ P +DG +IKGD L+ Sbjct: 73 IDIDTIDKINILNASILGMQESIRSLQTKPEHIAVDGNRFKPCDDIPYKCIIKGDGKYLN 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IA+ASI+AK RD M H+++P Y + + GYPT +H++ I+ GPS HR +FR Sbjct: 133 IASASILAKTYRDNYMEKIHEEFPMYNWKQNKGYPTKEHREAIRTHGPSKYHRKSFR 189 >gi|124262697|ref|YP_001023167.1| RNase HII [Methylibium petroleiphilum PM1] gi|189043523|sp|A2SMZ3|RNH21_METPP RecName: Full=Ribonuclease HII 1; Short=RNase HII 1 gi|124261943|gb|ABM96932.1| RNase HII [Methylibium petroleiphilum PM1] Length = 198 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 83/179 (46%), Positives = 113/179 (63%), Gaps = 2/179 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE-KITSSAIISISS 85 AG+DE GRG LAGPVV AA+ILDP+ G+NDSK++S K+R+ L++ I +A I+ Sbjct: 10 AGVDEAGRGPLAGPVVAAAVILDPSRPIDGLNDSKQLSAKRRDRLFDLIIERAAAYCIAE 69 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID+ NI +AT+ A+ A+ L V P+ LIDG P ++ A++KGD+ S Sbjct: 70 ASVEEIDRLNILQATMLAMQRAIAGLSVTPQLVLIDGNRSPLLPM-RSEAIVKGDARVTS 128 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASI+AKV RDRL H+ +P YGF H GY TA H + + G HR TF P+ Sbjct: 129 IGAASILAKVHRDRLCAKLHETFPLYGFAVHKGYGTADHLAALVQHGACPEHRRTFSPV 187 >gi|315498150|ref|YP_004086954.1| ribonuclease h [Asticcacaulis excentricus CB 48] gi|315416162|gb|ADU12803.1| Ribonuclease H [Asticcacaulis excentricus CB 48] Length = 207 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 94/198 (47%), Positives = 115/198 (58%), Gaps = 6/198 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E+ V G+DE GRG AGP+ VAA+ILDP IP GI DSKK+S K+R Sbjct: 2 PDFTFESQF----DGLVCGVDEAGRGPCAGPLCVAAVILDPARIPPGIADSKKLSEKQRF 57 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L I ++A S+ S ID HNI +AT+ + HAVE L P ALIDG P Sbjct: 58 ALEPDIKAAALAWSVIEISAADIDCHNILRATMMGMTHAVEALSPQPIHALIDGNRCPPL 117 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 A AV+KGD SLSIAAASI+AK RDR+M YP YGF SH GY H I Sbjct: 118 -AIPATAVVKGDDKSLSIAAASILAKTARDRIMIEMDALYPIYGFKSHKGYQAEAHIAAI 176 Query: 189 KEKGPSCIHRLTFRPLRN 206 + GPS IHR+++ +R+ Sbjct: 177 RLHGPSPIHRMSWATVRS 194 >gi|153814000|ref|ZP_01966668.1| hypothetical protein RUMTOR_00207 [Ruminococcus torques ATCC 27756] gi|317502410|ref|ZP_07960575.1| ribonuclease [Lachnospiraceae bacterium 8_1_57FAA] gi|331088003|ref|ZP_08336926.1| hypothetical protein HMPREF1025_00509 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848396|gb|EDK25314.1| hypothetical protein RUMTOR_00207 [Ruminococcus torques ATCC 27756] gi|316896220|gb|EFV18326.1| ribonuclease [Lachnospiraceae bacterium 8_1_57FAA] gi|330409314|gb|EGG88763.1| hypothetical protein HMPREF1025_00509 [Lachnospiraceae bacterium 3_1_46FAA] Length = 255 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 120/195 (61%), Gaps = 6/195 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E K+ + GIDE GRG LAGPVV A+IL + +NDSKK+S +RE LY Sbjct: 61 SYERKY--KDAEMICGIDEAGRGPLAGPVVAGAVILPKDCEILYLNDSKKLSASRREALY 118 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A+ + + AS ID+ NI +AT +A+ AVE L V+P L D +IP ++P Sbjct: 119 DEIMEKAVAVGVGMASPARIDEINILQATYEAMRKAVEQLSVVPDLLLNDAVTIP-EMPY 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD+ S+SIAAAS+IAKVTRDRLM K P+YGF + GY + H + +K Sbjct: 178 RQVPIVKGDAKSVSIAAASVIAKVTRDRLMMQYDKILPEYGFAQNKGYGSQSHIEALKRV 237 Query: 192 GPSCIHRLTFRPLRN 206 G S IHR +F ++N Sbjct: 238 GASPIHRRSF--IKN 250 >gi|239993624|ref|ZP_04714148.1| ribonuclease HII [Alteromonas macleodii ATCC 27126] Length = 190 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 87/187 (46%), Positives = 112/187 (59%), Gaps = 2/187 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S KKR L ++I A Sbjct: 2 HKLIAGVDEVGRGPLVGDVVTAAVILDPENPIEGLTDSKKLSEKKRVALAQEIREKALYW 61 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +I AS + IDK NI AT+ A+ AVE L V P +DG +P ++ AV+KGDS Sbjct: 62 NIGRASPEEIDKLNILHATMLAMIRAVEGLPVRPDFVRVDGNRVPA-WNFESEAVVKGDS 120 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + I+AASIIAKV RD M H+ YP Y F H GYPT H + I E G +R +F Sbjct: 121 LHAEISAASIIAKVERDNDMISLHEAYPQYNFAGHKGYPTKAHFEAIAEYGILDCYRKSF 180 Query: 202 RPLRNLS 208 +P++ L Sbjct: 181 KPVKALL 187 >gi|327392811|dbj|BAK10233.1| ribonuclease HII RnhB [Pantoea ananatis AJ13355] Length = 231 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R L+++I A S Sbjct: 33 GCIAGVDEVGRGPLVGAVVTAAVILDPANPVPGLADSKKLSEKRRLALFDQIKEKALAWS 92 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID NI AT+ A+ AV L + P LIDG P + AV+KGDS+ Sbjct: 93 LGRAEPDEIDNLNILHATMLAMQRAVAGLSITPDFVLIDGNRCPALPM-PSLAVVKGDSL 151 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRDR M +P YGF H GYPTA H + + + G + HR +F Sbjct: 152 VAEISAASIIAKVTRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFA 211 Query: 203 PLRN 206 P+RN Sbjct: 212 PVRN 215 >gi|291616360|ref|YP_003519102.1| RnhB [Pantoea ananatis LMG 20103] gi|291151390|gb|ADD75974.1| RnhB [Pantoea ananatis LMG 20103] Length = 215 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R L+++I A S Sbjct: 17 GCIAGVDEVGRGPLVGAVVTAAVILDPANPVPGLADSKKLSEKRRLALFDQIKEKALAWS 76 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID NI AT+ A+ AV L + P LIDG P + AV+KGDS+ Sbjct: 77 LGRAEPDEIDNLNILHATMLAMQRAVAGLSITPDFVLIDGNRCPALPM-PSLAVVKGDSL 135 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRDR M +P YGF H GYPTA H + + + G + HR +F Sbjct: 136 VAEISAASIIAKVTRDREMAELDLLFPQYGFAQHKGYPTALHMEKLTQYGATPHHRRSFA 195 Query: 203 PLRN 206 P+RN Sbjct: 196 PVRN 199 >gi|288801638|ref|ZP_06407080.1| ribonuclease HII [Prevotella melaninogenica D18] gi|288335680|gb|EFC74113.1| ribonuclease HII [Prevotella melaninogenica D18] Length = 200 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 105/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSKK++ KKR L E+I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDYQNELLNDSKKLTAKKRYALREEIERDAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + IDK NI A+ A++ A++ L V P + ++DG + ++KGD LS Sbjct: 73 VTPEEIDKINILNASFLAMHRALDQLSVRPEAVIVDGNRFKPYQDLPSTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y + S++GYPT KH+Q I E G + HR ++ Sbjct: 133 IAAASILAKTYRDDYMLSLAEEYPQYDWQSNMGYPTKKHRQAILEYGITPYHRKSY 188 >gi|89075406|ref|ZP_01161823.1| ribonuclease HII [Photobacterium sp. SKA34] gi|89048822|gb|EAR54392.1| ribonuclease HII [Photobacterium sp. SKA34] Length = 203 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK++ KKR L+++I A S Sbjct: 16 TCIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLTDSKKLTEKKRNLLFDEIKEKALSWS 75 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + IDK NI +AT+ A+ AV L + P LIDG +PE A AV+KGD Sbjct: 76 LGRCEADEIDKLNILQATMVAMQRAVAGLSLQPDYVLIDGNKVPELPMA-AQAVVKGDLR 134 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRDR M I ++P YGF H GYPT H + +++ G HR +F+ Sbjct: 135 VAEISAASIIAKVTRDREMEILGAEFPQYGFAKHKGYPTKAHFEALEQYGAIEQHRKSFK 194 Query: 203 PLRN 206 P++ Sbjct: 195 PVKR 198 >gi|330752641|emb|CBL87585.1| ribonuclease HII [uncultured Flavobacteria bacterium] Length = 199 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 111/197 (56%), Gaps = 12/197 (6%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 P ++LE GIDE GRG LAGPV AA+IL N I+DSKK+S Sbjct: 4 PRYSDYDLE-----------CGIDEAGRGCLAGPVTAAAVILKANFKHDLIDDSKKLSKI 52 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KREEL + I ++I SI + ID+ NI A++ A++ ++NL V P +IDG Sbjct: 53 KREELSKIIKENSIAYSIQFIDSRKIDEVNILNASILAMHKCIKNLSVKPEFLIIDGNRF 112 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + VIKGD L+IA+ASI+AK RD M+ KK+P+Y + + GYPT H+ Sbjct: 113 KKYKDIPHETVIKGDGKYLNIASASILAKHARDYYMQKISKKFPNYHWFKNNGYPTKHHK 172 Query: 186 QVIKEKGPSCIHRLTFR 202 + IK+ G + HR +F+ Sbjct: 173 EAIKKHGLTKYHRKSFK 189 >gi|157147385|ref|YP_001454704.1| ribonuclease HII [Citrobacter koseri ATCC BAA-895] gi|166225182|sp|A8ALA5|RNH2_CITK8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157084590|gb|ABV14268.1| hypothetical protein CKO_03183 [Citrobacter koseri ATCC BAA-895] Length = 198 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 107/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYDEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPALP-VPSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRD M +P YGF H GYPTA H + E G + HR +F Sbjct: 129 VAEISAASIIAKVTRDAEMAALDGIFPQYGFAQHKGYPTAFHLAALAEHGATEHHRRSFA 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|242242528|ref|ZP_04796973.1| ribonuclease HII [Staphylococcus epidermidis W23144] gi|242233955|gb|EES36267.1| ribonuclease HII [Staphylococcus epidermidis W23144] Length = 260 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 119/197 (60%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + N + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S K R L Sbjct: 64 QYENNIMSSNRDALICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARL 123 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + + + AS ID+ NI++AT A+ A+ +L V P LID ++ D+ Sbjct: 124 NQNLKENVYQYAYGIASSVEIDELNIYRATQLAMLRAINHLDVTPTHLLID--AMTLDID 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S+SIAAASI+AK RD+ MR K++PDYGFD + GY T +H + I Sbjct: 182 IPQTSIIKGDAKSVSIAAASIMAKEYRDQYMRQLSKQFPDYGFDKNAGYGTKQHLEAIDR 241 Query: 191 KGPSCIHRLTFRPLRNL 207 G HR +F P++++ Sbjct: 242 VGFINEHRQSFEPIKSM 258 >gi|260910879|ref|ZP_05917522.1| ribonuclease HII [Prevotella sp. oral taxon 472 str. F0295] gi|260634987|gb|EEX53034.1| ribonuclease HII [Prevotella sp. oral taxon 472 str. F0295] Length = 202 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 106/184 (57%), Gaps = 1/184 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSKK++ K+R L +I + A ++ Sbjct: 13 AGCDEAGRGCLAGSVFAAAVILPTDYENALLNDSKKLTEKQRYALRTQIEADALAWAVGE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI A++ A++ A++ L++ P++ ++DG ++KGD+ LS Sbjct: 73 VTADEIDEINILNASILAMHRALDGLKLRPQAVIVDGNRFKPYGTLPHETIVKGDAKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AK RD M +YP Y + + GYPT H+ I+E G S HR TF+ ++ Sbjct: 133 IAAASILAKTYRDDYMDNLALQYPAYQWKVNKGYPTKAHRAAIEEHGISPFHRKTFKGVK 192 Query: 206 NLSV 209 + V Sbjct: 193 EMLV 196 >gi|269959037|ref|YP_003328826.1| ribonuclease HII [Anaplasma centrale str. Israel] gi|269848868|gb|ACZ49512.1| ribonuclease HII [Anaplasma centrale str. Israel] Length = 223 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 85/201 (42%), Positives = 118/201 (58%), Gaps = 3/201 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKK 67 P F +E ++ + + G+DEVG GA+AGPVV AA+ L I DSK +S KK Sbjct: 2 PSFAIEDQLKSDTISVIVGVDEVGYGAIAGPVVAAAVYLPEREHGYIGDIKDSKMLSPKK 61 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R+EL+ KI S A + A I+KHNI A+ ++ A++NL V L+DG P Sbjct: 62 RDELFCKIVSHAKYGVGFARVCEIEKHNILVASHISMKRALQNLGVKADLVLVDGSRTPN 121 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ GDSIS SIAAASI+AKVTRDR M+ H+++P+YG++ + GY T H Sbjct: 122 LPWA-IKTIVGGDSISTSIAAASIVAKVTRDRFMKRLHEQHPEYGWNQNCGYGTKAHMIS 180 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 IK G + HR TF P++ LS Sbjct: 181 IKLHGKTTHHRSTFAPVKQLS 201 >gi|293366790|ref|ZP_06613466.1| ribonuclease HII [Staphylococcus epidermidis M23864:W2(grey)] gi|291319091|gb|EFE59461.1| ribonuclease HII [Staphylococcus epidermidis M23864:W2(grey)] Length = 260 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 118/197 (59%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + N + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S R L Sbjct: 64 QYENNIMSSNRDALICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPNNRARL 123 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + + + AS ID+ NI++AT A+ A+ L V P LID ++ D+ Sbjct: 124 NQNLKENVYQYAYGIASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLID--AMTLDID 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S+SIAAASI+AK RD+ MR K++P+YGFD + GY T +H + I + Sbjct: 182 IPQTSIIKGDAKSVSIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 G HR +F P++++ Sbjct: 242 VGIINEHRQSFEPIKSM 258 >gi|257439821|ref|ZP_05615576.1| ribonuclease HII [Faecalibacterium prausnitzii A2-165] gi|257197730|gb|EEU96014.1| ribonuclease HII [Faecalibacterium prausnitzii A2-165] Length = 214 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 86/193 (44%), Positives = 116/193 (60%), Gaps = 2/193 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +E +A +R + AG+DE GRG L GPVVVAA ILDP +GINDSKK++ KKRE Sbjct: 12 PLYEYDAAIRAQ-YGFFAGVDEAGRGPLCGPVVVAACILDPEKPVYGINDSKKLTEKKRE 70 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+++I A I + ID+ NI AT+ + A E L ++P L+DG +P Sbjct: 71 ALFDEICDKALAYKIVFVGPEIIDRDNILNATMSGMKQAAEGLDIVPNLVLVDGNRVPAA 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A V+KGD+ S SI AASI+AKV+RDR M K+YP Y H GYPT H ++I Sbjct: 131 LEIPAQPVVKGDATSASIGAASILAKVSRDRYMMELDKQYPQYQLAKHKGYPTKLHYELI 190 Query: 189 KEKGPSCIHRLTF 201 ++ G +R +F Sbjct: 191 EQYGIQPFYRRSF 203 >gi|224825027|ref|ZP_03698133.1| Ribonuclease H [Lutiella nitroferrum 2002] gi|224602698|gb|EEG08875.1| Ribonuclease H [Lutiella nitroferrum 2002] Length = 193 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 112/182 (61%), Gaps = 1/182 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DE GRG LAG V AA+ILDP G+ DSKK+S K+R+EL I + I Sbjct: 1 MIAGVDEAGRGPLAGAVFAAAVILDPARPIVGLADSKKLSEKQRDELAPLIRERSLAWCI 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS ID+ NI +AT+ A+ AV L V+P LIDG +P+ + A A++KGD++ Sbjct: 61 ASASVDEIDRLNILQATMLAMSRAVAGLSVLPAEVLIDGNRVPKGIAVPARAIVKGDALE 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD + +P++GF H GYPTA+H I+ G HR TF P Sbjct: 121 PAISAASILAKTARDAELVALDALHPEFGFARHKGYPTAEHLAAIERFGVLPEHRRTFGP 180 Query: 204 LR 205 ++ Sbjct: 181 VK 182 >gi|290473671|ref|YP_003466543.1| RNAse HII [Xenorhabdus bovienii SS-2004] gi|289172976|emb|CBJ79747.1| RNAse HII [Xenorhabdus bovienii SS-2004] Length = 196 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 88/183 (48%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ K+RE LY +I A S+ Sbjct: 10 LIAGVDEVGRGPLVGAVVTAAVILDPAKPITGLMDSKKLTEKRREALYLEIKEKALCWSL 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AVE L + P LIDG P A AVIKGDS+ Sbjct: 70 GRAEPEEIDQLNILHATMLAMQRAVEGLAITPDYVLIDGNRCPALPM-SALAVIKGDSLV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M K++PDYGF H GYPTA H + + G + HR +F P Sbjct: 129 AEISAASILAKVTRDREMAELGKQFPDYGFAQHKGYPTALHLEKLALLGATEHHRKSFAP 188 Query: 204 LRN 206 ++ Sbjct: 189 VKR 191 >gi|283783967|ref|YP_003363832.1| ribonuclease HII [Citrobacter rodentium ICC168] gi|282947421|emb|CBG86966.1| ribonuclease HII [Citrobacter rodentium ICC168] Length = 198 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 107/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A S Sbjct: 10 RLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYQEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A IDK NI AT+ A+ AV L + P LIDG P + AV+KGDS Sbjct: 70 LGRAEPHEIDKLNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPALP-VPSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + G + HR +F Sbjct: 129 VAEISAASILAKVTRDAEMAALDSVFPQYGFAQHKGYPTAFHLEALAAHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|150010125|ref|YP_001304868.1| ribonuclease HII [Parabacteroides distasonis ATCC 8503] gi|255012614|ref|ZP_05284740.1| ribonuclease HII [Bacteroides sp. 2_1_7] gi|256838948|ref|ZP_05544458.1| ribonuclease HII [Parabacteroides sp. D13] gi|298374495|ref|ZP_06984453.1| ribonuclease HII [Bacteroides sp. 3_1_19] gi|301308175|ref|ZP_07214129.1| ribonuclease HII [Bacteroides sp. 20_3] gi|166226634|sp|A6LHT2|RNH2_PARD8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|149938549|gb|ABR45246.1| ribonuclease HII [Parabacteroides distasonis ATCC 8503] gi|256739867|gb|EEU53191.1| ribonuclease HII [Parabacteroides sp. D13] gi|298268863|gb|EFI10518.1| ribonuclease HII [Bacteroides sp. 3_1_19] gi|300833645|gb|EFK64261.1| ribonuclease HII [Bacteroides sp. 20_3] Length = 199 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 99/176 (56%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S KKR +L I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVFAAAVILPEDFKNEDLNDSKQLSEKKRYKLRPVIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI KA+ A++ A+E L+V P LIDG V+KGD LS Sbjct: 73 VSPEEIDKINILKASFLAMHRAIEQLKVRPEHLLIDGNRFTPYPDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M +YP Y + + GYPT H++ I+ G + HR TF Sbjct: 133 IAAASILAKTYRDDYMNELALEYPAYHWLDNKGYPTKVHREAIRTHGITPYHRKTF 188 >gi|251810677|ref|ZP_04825150.1| ribonuclease HII [Staphylococcus epidermidis BCM-HMP0060] gi|251805837|gb|EES58494.1| ribonuclease HII [Staphylococcus epidermidis BCM-HMP0060] Length = 260 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 119/197 (60%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + N + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S K R L Sbjct: 64 QYENNIMSSNRDALICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARL 123 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + + + AS ID+ NI++AT A+ A+ L V P LID ++ D+ Sbjct: 124 NQNLKENVYQYAYGIASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLID--AMTLDID 181 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S+SIAAASI+AK RD+ MR K++P+YGFD + GY T +H + I + Sbjct: 182 IPQTSIIKGDAKSVSIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQ 241 Query: 191 KGPSCIHRLTFRPLRNL 207 G HR +F P++++ Sbjct: 242 VGIINEHRQSFEPIKSM 258 >gi|27467840|ref|NP_764477.1| RNase HII [Staphylococcus epidermidis ATCC 12228] gi|57866704|ref|YP_188394.1| ribonuclease HII [Staphylococcus epidermidis RP62A] gi|282876322|ref|ZP_06285189.1| ribonuclease HII [Staphylococcus epidermidis SK135] gi|38258563|sp|Q8CPH6|RNH2_STAES RecName: Full=Ribonuclease HII; Short=RNase HII gi|71153705|sp|Q5HPU6|RNH2_STAEQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|27315385|gb|AAO04519.1|AE016747_16 RNase HII [Staphylococcus epidermidis ATCC 12228] gi|57637362|gb|AAW54150.1| ribonuclease HII [Staphylococcus epidermidis RP62A] gi|281295347|gb|EFA87874.1| ribonuclease HII [Staphylococcus epidermidis SK135] gi|329724332|gb|EGG60844.1| ribonuclease HII [Staphylococcus epidermidis VCU144] gi|329736260|gb|EGG72532.1| ribonuclease HII [Staphylococcus epidermidis VCU028] gi|329736540|gb|EGG72806.1| ribonuclease HII [Staphylococcus epidermidis VCU045] Length = 256 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 119/197 (60%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + N + GIDEVGRG LAGPVV A+IL+ N+ G++DSKK+S K R L Sbjct: 60 QYENNIMSSNRDALICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + + + AS ID+ NI++AT A+ A+ L V P LID ++ D+ Sbjct: 120 NQNLKENVYQYAYGIASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLID--AMTLDID 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S+SIAAASI+AK RD+ MR K++P+YGFD + GY T +H + I + Sbjct: 178 IPQTSIIKGDAKSVSIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQ 237 Query: 191 KGPSCIHRLTFRPLRNL 207 G HR +F P++++ Sbjct: 238 VGIINEHRQSFEPIKSM 254 >gi|288928610|ref|ZP_06422456.1| ribonuclease HII [Prevotella sp. oral taxon 317 str. F0108] gi|288329594|gb|EFC68179.1| ribonuclease HII [Prevotella sp. oral taxon 317 str. F0108] Length = 202 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 68/183 (37%), Positives = 106/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSKK++ K+R L +I + A ++ Sbjct: 13 AGCDEAGRGCLAGSVFAAAVILPVDYENALLNDSKKLTEKQRYALRTQIETDALAWAVGE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + IDK NI A++ A++ A++ L++ P++ ++DG ++KGD+ LS Sbjct: 73 VTADEIDKINILNASILAMHRALDGLKLRPQAVIVDGNRFKPYGTLPHETIVKGDAKFLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAAS++AK RD M ++P Y +D + GYPT H+ I+E G S HR TF+ ++ Sbjct: 133 IAAASVLAKTYRDDYMNSLALQHPAYQWDVNKGYPTKAHRAAIEEHGISPFHRKTFKGVK 192 Query: 206 NLS 208 + Sbjct: 193 EML 195 >gi|332307491|ref|YP_004435342.1| Ribonuclease H [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174820|gb|AEE24074.1| Ribonuclease H [Glaciecola agarilytica 4H-3-7+YE-5] Length = 197 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 88/187 (47%), Positives = 120/187 (64%), Gaps = 3/187 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP+ G+ DSKKIS KKR L++ I +A +S Sbjct: 3 QLIAGVDEVGRGPLVGDVVTAAVILDPSKPIAGLADSKKISEKKRLALFDLIMQNALSVS 62 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS + ID+ NI AT+ A+ AV+ L P +DG P+ + AV+KGDS+ Sbjct: 63 VGRASPEEIDELNILHATMLAMTRAVQGLATQPTFVRVDGNRCPK-WNYASEAVVKGDSL 121 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRD M H+KYP+YGF H GYPT H + + E GP +R++F+ Sbjct: 122 YAEISAASIIAKVTRDAEMTALHEKYPEYGFGQHKGYPTKAHLEKLAEFGPLPEYRMSFK 181 Query: 203 PLRNLSV 209 P++ LS+ Sbjct: 182 PVQ-LSL 187 >gi|119355888|ref|YP_910532.1| ribonuclease H [Chlorobium phaeobacteroides DSM 266] gi|166225181|sp|A1BCI1|RNH2_CHLPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|119353237|gb|ABL64108.1| Ribonuclease H [Chlorobium phaeobacteroides DSM 266] Length = 205 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 78/202 (38%), Positives = 115/202 (56%), Gaps = 8/202 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKK 67 + E + + ++GIDE GRG LAGPVV AA+I P ++DSKK+S Sbjct: 4 DYEYSLWPT-LSLISGIDEAGRGPLAGPVVAAAVIFPRWFRPRHAGLDKLDDSKKLSPNL 62 Query: 68 REELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE+L I +A +++ ID+ NI +AT+ A+ +AV +L P L+DG Sbjct: 63 REQLAPTIKTFAAFWAVAVIEPDIIDRINIFQATMQAMNNAVASLHQPPELILVDGNRFM 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + P ++KGD+ SIAAAS++AK RD +M K+YP+YGF+ H GYPTA H + Sbjct: 123 PNAPIPYETIVKGDAKVFSIAAASVLAKTHRDAIMTAYGKEYPEYGFERHFGYPTASHIK 182 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 I+ G + +HR +FR L+ L Sbjct: 183 AIETFGRTPVHRKSFR-LKQLG 203 >gi|116872706|ref|YP_849487.1| ribonuclease HII [Listeria welshimeri serovar 6b str. SLCC5334] gi|123458431|sp|A0AI76|RNH2_LISW6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|116741584|emb|CAK20708.1| ribonuclease HII [Listeria welshimeri serovar 6b str. SLCC5334] Length = 261 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 84/194 (43%), Positives = 118/194 (60%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + + +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETNLSTQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSLLGINDSKQLSEAKRDMLF 119 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A I + H ID+ NI++AT A+ A++ L P L+D ++P Sbjct: 120 EIIKKEALSIGVGIIEHDMIDQVNIYEATKLAMSEALDQLNPAPDFILVD--AMPLKYSE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDR+M+ YP Y F +++GY T KH + Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDRMMQHYDALYPGYDFANNMGYGTKKHLNGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHRL+F P++ Sbjct: 238 GVCPIHRLSFSPVK 251 >gi|47093922|ref|ZP_00231661.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858] gi|47017708|gb|EAL08502.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858] Length = 204 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 121/194 (62%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 3 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 62 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I AI I + H ID+ NI++AT A+ A++ L P LID + Sbjct: 63 ETIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMREALDQLTPEPDFVLIDAMPLRYTEA- 121 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T KH + Sbjct: 122 -ELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTI 180 Query: 192 GPSCIHRLTFRPLR 205 G IHR++F P++ Sbjct: 181 GICPIHRISFAPVK 194 >gi|167855723|ref|ZP_02478479.1| ribonuclease HII [Haemophilus parasuis 29755] gi|167853179|gb|EDS24437.1| ribonuclease HII [Haemophilus parasuis 29755] Length = 195 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 84/187 (44%), Positives = 113/187 (60%), Gaps = 3/187 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV A+ILDPN G+ DSKK+S K+R L E+I + A S Sbjct: 8 KFIAGVDEVGRGPLVGAVVTVAVILDPNQPIEGLADSKKLSEKRRLALAEEIKAKALCWS 67 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L++ P L+DG IP A AV+KGDS Sbjct: 68 LGRAEPDEIDQLNILHATMLAMQRAVAGLRIQPDFVLVDGNRIPTLPM-PAQAVVKGDSF 126 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD+ M K+YP+YGF H GYPT H + ++ G + HR +F Sbjct: 127 VAEISAASILAKVARDQEMDELDKQYPEYGFAQHKGYPTKLHFEKLESLGVTPYHRKSFA 186 Query: 203 PL-RNLS 208 P+ + L+ Sbjct: 187 PVAQRLT 193 >gi|297538517|ref|YP_003674286.1| Ribonuclease H [Methylotenera sp. 301] gi|297257864|gb|ADI29709.1| Ribonuclease H [Methylotenera sp. 301] Length = 194 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 111/188 (59%), Gaps = 4/188 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 + G DE GRG LAG V AA+IL+P+ G+ DSKK+S KKR+ L +I A +I Sbjct: 6 LICGADEAGRGPLAGAVYAAAVILNPDRPIIGLADSKKLSEKKRDLLSVEIKQYALAWAI 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIP---RSALIDGRSIPEDLPCQAFAVIKGD 140 +S S Q ID+ NI +A+L A+ A+E +QV + + + A++KGD Sbjct: 66 ASCSAQEIDEINILQASLLAMKRAIEAMQVQFGITPDLVQVDGNKCPKISLPCEAIVKGD 125 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S +I+AASI+AKV RD + K YP YGF H GYPTA H Q++ G + +HRL+ Sbjct: 126 SKVQAISAASILAKVARDAELYELDKIYPQYGFAKHKGYPTAFHLQMLDAHGVTPVHRLS 185 Query: 201 FRPLRNLS 208 + P+R LS Sbjct: 186 YAPVRRLS 193 >gi|193215094|ref|YP_001996293.1| ribonuclease HII [Chloroherpeton thalassium ATCC 35110] gi|238692680|sp|B3QRP3|RNH2_CHLT3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|193088571|gb|ACF13846.1| Ribonuclease H [Chloroherpeton thalassium ATCC 35110] Length = 204 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 111/197 (56%), Gaps = 6/197 (3%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHK 66 E+ +K + G+DEVGRG LAGPVV AA+I D P GI +DSK + H+ Sbjct: 2 DVAFESPYWKK-FQYICGVDEVGRGPLAGPVVAAAVIFDRYFEPSGILEQIDDSKALRHE 60 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R L +I A SI+ S + ID+ NI +AT A+ A+E L IP LIDG Sbjct: 61 TRVLLSSEIKKQALSFSIAEISPEVIDEVNILQATFLAMNQAIEQLSPIPEFLLIDGNRF 120 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 LP V+KGDS SIAAASIIAKV RD M ++YP+YGF H GYPT H Sbjct: 121 KTTLPIPFETVVKGDSKVFSIAAASIIAKVHRDNFMINLAERYPEYGFAQHFGYPTKAHI 180 Query: 186 QVIKEKGPSCIHRLTFR 202 + IK G S +HR +F+ Sbjct: 181 EAIKMFGRSKVHRKSFK 197 >gi|320120511|gb|EFE28779.2| ribonuclease HII [Filifactor alocis ATCC 35896] Length = 256 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 77/188 (40%), Positives = 110/188 (58%), Gaps = 1/188 (0%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE-LYE 73 E K + V G+DE GRG LAGPVV A +I+ +++ G+NDSKKI REE + Sbjct: 66 EQDWNSKGILLVGGVDEAGRGPLAGPVVAACVIMKSDSLILGMNDSKKIKETVREELYDK 125 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I S I AS + ID++NI +AT A+ A++ ++ +P L+DG + + Sbjct: 126 VIQDSISFGIGIASSEEIDRYNILQATFLAMKRAMQEMKQVPDLVLVDGNQEISNCSIRQ 185 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 VI GDSI SIA ASI+AKV RDR+MR + YP++ F S+ GY T+ H ++ G Sbjct: 186 ETVIHGDSICYSIACASILAKVYRDRIMRDYDRIYPEFDFLSNKGYGTSHHYDALRTYGV 245 Query: 194 SCIHRLTF 201 + IHR +F Sbjct: 246 TPIHRKSF 253 >gi|56478865|ref|YP_160454.1| ribonuclease HII [Aromatoleum aromaticum EbN1] gi|81356536|sp|Q5NZG1|RNH2_AZOSE RecName: Full=Ribonuclease HII; Short=RNase HII gi|56314908|emb|CAI09553.1| Ribonuclease HII [Aromatoleum aromaticum EbN1] Length = 204 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 80/187 (42%), Positives = 108/187 (57%), Gaps = 2/187 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 + + G+DE GRG LAG VV AA+ILDP G+NDSKK++ + RE L I AI Sbjct: 7 IGLICGVDEAGRGPLAGSVVAAAVILDPARPIDGLNDSKKLTERARERLAPLIRERAIAW 66 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +++ AS + ID+ NI AT+ A+ AV L +P +DG P A AV++GD+ Sbjct: 67 AVAEASVEEIDRLNILHATMLAMQRAVAALGCVPDLVRVDGNRCPPLA-VPAEAVVRGDA 125 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +IAAASI+AK RD M +YP YGF SH GYPT +H ++ G HR +F Sbjct: 126 TVPAIAAASILAKTVRDAQMIALDGEYPAYGFASHKGYPTPEHFIALRRHGVVACHRRSF 185 Query: 202 RPLRNLS 208 P+R L Sbjct: 186 APVRELL 192 >gi|116333443|ref|YP_794970.1| ribonuclease HII [Lactobacillus brevis ATCC 367] gi|122269870|sp|Q03S83|RNH2_LACBA RecName: Full=Ribonuclease HII; Short=RNase HII gi|116098790|gb|ABJ63939.1| RNase HII [Lactobacillus brevis ATCC 367] Length = 257 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 86/198 (43%), Positives = 119/198 (60%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + VAGIDEVGRG LAGPVV +A+IL P+ +NDSK+++ K+RE L Sbjct: 61 LHYERPFWARG-ERVAGIDEVGRGPLAGPVVTSAVILPPDFDIPLVNDSKQLTAKERERL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I + A +SI S ID+ NI++AT A+ AV L + P+ ++D IP D Sbjct: 120 YPLILAQAQSVSIGIGSPALIDQINIYQATRVAMQRAVLGLGLAPQQLIVDAMQIPVD-- 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S S+AAASI+AKV RD LM + YP YGF + GY TA+H Q + + Sbjct: 178 VPQIRLIKGDAKSASVAAASIVAKVYRDHLMATYDELYPGYGFAQNAGYGTAEHLQGLAD 237 Query: 191 KGPSCIHRLTFRPLRNLS 208 +G + IHR TF P++ + Sbjct: 238 RGVTPIHRRTFSPVQKIL 255 >gi|281491813|ref|YP_003353793.1| ribonuclease HII [Lactococcus lactis subsp. lactis KF147] gi|281375527|gb|ADA65037.1| Ribonuclease HII [Lactococcus lactis subsp. lactis KF147] Length = 258 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + + +AGIDEVGRG LAGPVV AA+IL N G+NDSKK+ K + Sbjct: 59 LEFEKELYGQGIQLIAGIDEVGRGPLAGPVVTAAVILPNNCKIRGLNDSKKVPKSKHHAI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A I I + ID+ NI++AT A+ AV L V P LID ++ DLP Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSVKPEHLLID--AMVLDLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKVTRD +M+ ++P+Y F+ + GY TAKH + + + Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKEFALEFPEYDFEHNAGYGTAKHLEALTK 236 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++ + Sbjct: 237 YGITRIHRKSYEPIKTM 253 >gi|123443471|ref|YP_001007444.1| ribonuclease HII [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166226668|sp|A1JP66|RNH2_YERE8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|122090432|emb|CAL13300.1| ribonuclease HII [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 198 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPKLAM-PSLAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++P+YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLEKLTTFGATEHHRRSFGP 190 Query: 204 LRN 206 ++ Sbjct: 191 VKR 193 >gi|46907500|ref|YP_013889.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365] gi|226223876|ref|YP_002757983.1| ribonuclease H rnh [Listeria monocytogenes Clip81459] gi|254824666|ref|ZP_05229667.1| ribonuclease HII [Listeria monocytogenes FSL J1-194] gi|254852673|ref|ZP_05242021.1| ribonuclease HII [Listeria monocytogenes FSL R2-503] gi|254932410|ref|ZP_05265769.1| rnhB [Listeria monocytogenes HPB2262] gi|255520255|ref|ZP_05387492.1| ribonuclease HII [Listeria monocytogenes FSL J1-175] gi|300765309|ref|ZP_07075293.1| ribonuclease HII [Listeria monocytogenes FSL N1-017] gi|67461454|sp|Q720E8|RNH2_LISMF RecName: Full=Ribonuclease HII; Short=RNase HII gi|259494069|sp|C1L2I1|RNH2_LISMC RecName: Full=Ribonuclease HII; Short=RNase HII gi|46880768|gb|AAT04066.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365] gi|225876338|emb|CAS05047.1| Putative ribonuclease H rnh [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605991|gb|EEW18599.1| ribonuclease HII [Listeria monocytogenes FSL R2-503] gi|293583967|gb|EFF95999.1| rnhB [Listeria monocytogenes HPB2262] gi|293593905|gb|EFG01666.1| ribonuclease HII [Listeria monocytogenes FSL J1-194] gi|300513992|gb|EFK41055.1| ribonuclease HII [Listeria monocytogenes FSL N1-017] gi|328468563|gb|EGF39563.1| ribonuclease HII [Listeria monocytogenes 1816] gi|328475117|gb|EGF45901.1| ribonuclease HII [Listeria monocytogenes 220] gi|332311718|gb|EGJ24813.1| Ribonuclease HII [Listeria monocytogenes str. Scott A] Length = 261 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 121/194 (62%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I AI I + H ID+ NI++AT A+ A++ L P LID + Sbjct: 120 ETIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMREALDQLTPEPDFVLIDAMPLRYTEA- 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T KH + Sbjct: 179 -ELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTKKHLLGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHR++F P++ Sbjct: 238 GICPIHRISFAPVK 251 >gi|241662957|ref|YP_002981317.1| ribonuclease HII [Ralstonia pickettii 12D] gi|309782124|ref|ZP_07676854.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA] gi|240864984|gb|ACS62645.1| Ribonuclease H [Ralstonia pickettii 12D] gi|308919190|gb|EFP64857.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA] Length = 232 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 76/193 (39%), Positives = 112/193 (58%), Gaps = 5/193 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 ++ + G+DE GRG LAGPV AA++L+P G+ DSK ++ KKRE LY++I Sbjct: 20 AAKRARRILCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLADSKILTAKKREALYDEIVE 79 Query: 78 SA-IISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQA 133 A ++ A+ + ID+ NI AT+ A+ AV + +P +DG P+ Sbjct: 80 KALAWHVAEATVEEIDRINILHATMLAMQRAVHGVAALGTLPDLVQVDGNRCPQVAFA-V 138 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 AV+KGD++ +I+AASI+AKVTRDR + H ++P YGFD H GY T +H I G Sbjct: 139 EAVVKGDALVPAISAASILAKVTRDRQLAALHVEFPLYGFDVHAGYGTPQHLAAIDLHGV 198 Query: 194 SCIHRLTFRPLRN 206 + HR +F P+R Sbjct: 199 TPHHRRSFAPVRR 211 >gi|315127144|ref|YP_004069147.1| RNAse HII [Pseudoalteromonas sp. SM9913] gi|315015658|gb|ADT68996.1| RNAse HII [Pseudoalteromonas sp. SM9913] Length = 199 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 80/191 (41%), Positives = 112/191 (58%), Gaps = 2/191 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + N+ +AG+DEVGRG L G VV AA+IL+P G+ DSKK++ KKR+ L +I Sbjct: 2 QIERPNVTLIAGVDEVGRGPLVGDVVTAAVILNPAKPIAGLADSKKLTDKKRQLLAIEIK 61 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A +I S ID+ NI +AT+ A+ AVE L +P +DG +P+ A A Sbjct: 62 EKALCYAIGRCSPSEIDELNILQATMLAMSRAVEALSTVPEFVFVDGNRLPKLAM-PAQA 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS+ I+AASI+AKV RD M +YP YGF H GYPT H +++ G Sbjct: 121 VVKGDSLVAEISAASILAKVARDDEMIELDARYPQYGFAGHKGYPTKAHFAALEQYGAID 180 Query: 196 IHRLTFRPLRN 206 HR +F+P++ Sbjct: 181 EHRKSFKPVQR 191 >gi|290894532|ref|ZP_06557482.1| rnhB protein [Listeria monocytogenes FSL J2-071] gi|290555913|gb|EFD89477.1| rnhB protein [Listeria monocytogenes FSL J2-071] Length = 261 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 122/194 (62%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ LY Sbjct: 60 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALY 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I + AI + + H ID+ NI++AT A+ A++ LQ P LID + Sbjct: 120 ETIQTEAIAVGVGIIEHNVIDQVNIYEATKLAMRAALDQLQPEPDFVLIDAMPLKYSDA- 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM++ + YP Y F +++GY T KH + Sbjct: 179 -ELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDETYPGYDFANNMGYGTKKHLHGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHR++F P++ Sbjct: 238 GICPIHRISFAPVK 251 >gi|293408275|ref|ZP_06652115.1| ribonuclease HII [Escherichia coli B354] gi|331671689|ref|ZP_08372487.1| ribonuclease HII [Escherichia coli TA280] gi|291472526|gb|EFF15008.1| ribonuclease HII [Escherichia coli B354] gi|331071534|gb|EGI42891.1| ribonuclease HII [Escherichia coli TA280] Length = 198 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 109/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S K+R L E+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|301025937|ref|ZP_07189421.1| ribonuclease HII [Escherichia coli MS 69-1] gi|300395736|gb|EFJ79274.1| ribonuclease HII [Escherichia coli MS 69-1] Length = 198 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 109/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S K+R L E+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPSRPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|330752106|emb|CBL87067.1| ribonuclease HII [uncultured Flavobacteria bacterium] Length = 194 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 102/177 (57%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL + +NDSKK++ K+R L I A+ +++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPADFNEPLLNDSKKLTEKQRFYLRPIIEKHAVAFAVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + +D+ NI A + A++ A++ L+ P L+DG +I+GD + Sbjct: 72 CTPKKVDEINILNAAIKAMHKAIQKLKPTPIHILVDGNRFHPFKKIPHQCIIRGDGKYQN 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD LM KK+P Y + ++ GYPT KH++ I+ G + HR TFR Sbjct: 132 IAAASILAKTYRDDLMLTLDKKHPKYDWKNNKGYPTKKHREAIRANGITSHHRKTFR 188 >gi|253573503|ref|ZP_04850846.1| ribonuclease HII [Paenibacillus sp. oral taxon 786 str. D14] gi|251847031|gb|EES75036.1| ribonuclease HII [Paenibacillus sp. oral taxon 786 str. D14] Length = 206 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 90/200 (45%), Positives = 119/200 (59%), Gaps = 6/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + +AGIDEVGRG L G VV AA+IL + +NDSKK+S KKRE+L Sbjct: 5 LKYEREYWQAGYSHIAGIDEVGRGCLFGDVVAAAVILPQGLVLEDVNDSKKLSAKKREKL 64 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ I AI + I S ID+ NI +AT A+ AVE L + P LID D+P Sbjct: 65 FDLIMEQAIAVGIGSVDAATIDQINIKQATRRAMKQAVEQLSIQPEYLLIDAEK--VDVP 122 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +VIKGD+ S SIAAASI+AKVTRDRL + +YP+YG H GY T H++ + Sbjct: 123 IPQLSVIKGDATSQSIAAASIVAKVTRDRLCQGEWDARYPEYGIAVHKGYATKLHREQLL 182 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 GP+ +HR +F +RNL V Sbjct: 183 ALGPTPMHRKSF--MRNLFV 200 >gi|302771367|ref|XP_002969102.1| ribonuclease H11 [Selaginella moellendorffii] gi|300163607|gb|EFJ30218.1| ribonuclease H11 [Selaginella moellendorffii] Length = 195 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 85/192 (44%), Positives = 111/192 (57%), Gaps = 7/192 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS--AIIS 82 V G+DE GRG LAGPVV AA I+ + GI+DSKK++ +KRE+LY +ITS+ S Sbjct: 2 RVIGVDEAGRGPLAGPVVAAACIIPEDVDIQGIDDSKKLTAEKREQLYSQITSTPGVRFS 61 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAV-----ENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 I ID+ NI +AT++A+ V P + R A +V+ Sbjct: 62 ICVVDAPRIDEINILQATMEAMETCVEELTGNGRDHPPYILIDGNRIPGGLSGKHARSVV 121 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD+ S IAAASI+AKVTRDRLM K++P YGF H GY TA H + + GP IH Sbjct: 122 KGDAESHVIAAASILAKVTRDRLMEDYDKRWPLYGFKDHKGYGTASHTAALLKHGPCDIH 181 Query: 198 RLTFRPLRNLSV 209 R +F PLRNL + Sbjct: 182 RRSFAPLRNLIL 193 >gi|90415807|ref|ZP_01223740.1| Ribonuclease HII (RNase HII) [marine gamma proteobacterium HTCC2207] gi|90332181|gb|EAS47378.1| Ribonuclease HII (RNase HII) [marine gamma proteobacterium HTCC2207] Length = 204 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 83/186 (44%), Positives = 111/186 (59%), Gaps = 2/186 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA- 79 N+ +AG+DEVGRG LAG VV AA+IL N+ G+ DSK +S ++RE LY ITS A Sbjct: 8 ANIKFLAGVDEVGRGPLAGDVVTAAVILPANHGIEGLADSKALSSRQRENLYADITSRAL 67 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 S++ S ID+ NI +ATL A+ AV L P +DG +P+ + AV+KG Sbjct: 68 CWSVARCSVAEIDRFNILQATLMAMRRAVMGLSQQPDYVAVDGNRLPQ-WEYRGEAVVKG 126 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D I+AASIIAKV RD M+ YP YGF ++ GY T +H + + G + IHR Sbjct: 127 DGRVECISAASIIAKVVRDAEMKAFDITYPGYGFAANKGYGTPQHLEALSRIGATPIHRR 186 Query: 200 TFRPLR 205 TF P+R Sbjct: 187 TFAPVR 192 >gi|73748590|ref|YP_307829.1| ribonuclease HII [Dehalococcoides sp. CBDB1] gi|97182414|sp|Q3ZXD6|RNH2_DEHSC RecName: Full=Ribonuclease HII; Short=RNase HII gi|73660306|emb|CAI82913.1| ribonuclease HII [Dehalococcoides sp. CBDB1] Length = 212 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 80/209 (38%), Positives = 111/209 (53%), Gaps = 5/209 (2%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGIND 59 + P E ++R++ +AG+DE GRG LAGPVV A+I+ P + + D Sbjct: 1 MPATVICPSRAEEKLLRKQGFILIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVEMVRD 60 Query: 60 SKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SK +S KRE LY I S A + + ++ ID I AT A+ AVE+L Sbjct: 61 SKVLSPAKREYLYCHIVSMAVTFGVGAVDNEQIDSMGIAPATRLAMKQAVEDL-TCQPDF 119 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 L+ D+P ++ GD++ SIA ASI+AKV+RDRLM +YP Y H G Sbjct: 120 LLVDYLKLPDIPLPQKGIVNGDALCFSIACASIVAKVSRDRLMSKLDMEYPGYYLAKHKG 179 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 Y TA H + I +KG S IHR TF PL+ + Sbjct: 180 YGTALHVECICQKGISPIHRRTFAPLKGM 208 >gi|289449974|ref|YP_003475451.1| ribonuclease HII [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184521|gb|ADC90946.1| ribonuclease HII [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 228 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 80/191 (41%), Positives = 111/191 (58%), Gaps = 2/191 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E ++ +AG DE GRG +AGP+ AA+++DP +G+NDSKK+S K+REEL Sbjct: 35 LKFEEQAAQQGFTCIAGTDEAGRGPVAGPIFAAAVVIDPRRPLYGVNDSKKLSPKRREEL 94 Query: 72 YEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I +A SI+ + + ID+ I A + AV + + L+D + D Sbjct: 95 FNIICERAAAYSIAMVTAKVIDQIGIGPANDLVLKQAVGRMSIKADYVLVDYFKLK-DYA 153 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+ KGDS+S SIAAASI+AKV+RDR M K YP YGF +H GY TA H+Q IKE Sbjct: 154 IPYLAITKGDSLSASIAAASILAKVSRDRYMVQQDKIYPQYGFAAHKGYGTAAHRQAIKE 213 Query: 191 KGPSCIHRLTF 201 G HR +F Sbjct: 214 YGLCPEHRRSF 224 >gi|289434557|ref|YP_003464429.1| Ribonuclease HII [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170801|emb|CBH27343.1| rnhB [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 261 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 119/194 (61%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KRE L+ Sbjct: 60 QYENDLYQQGYKCIAGVDEVGRGPLAGPVVAAAVILPEDFSVVGINDSKQLSELKRETLF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I AI + + H ID+ NI++AT A+ A++ L P LID ++P Sbjct: 120 ELIQQQAIAVGVGIIEHDVIDEVNIYEATKLAMRKALDELNPSPDFVLID--AMPLKYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDRLM+ YP Y F +++GY T H + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRLMKDYDVAYPGYDFVNNMGYGTKNHLNGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHRL+F P++ Sbjct: 238 GVCPIHRLSFAPVK 251 >gi|91775869|ref|YP_545625.1| RNase HII [Methylobacillus flagellatus KT] gi|123078856|sp|Q1H153|RNH2_METFK RecName: Full=Ribonuclease HII; Short=RNase HII gi|91709856|gb|ABE49784.1| RNase HII [Methylobacillus flagellatus KT] Length = 193 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 77/183 (42%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 + G+DE GRG LAG V AA+ILDP + G+ DSK +S KKR+ L +I A +I Sbjct: 7 LICGVDEAGRGPLAGAVYAAAVILDPQHPIPGLADSKTLSEKKRDMLAIEIKQHALAWTI 66 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +S S + ID+ NI +A+L A+ A++ L ++P L+DG + A ++KGDS Sbjct: 67 ASCSAEEIDEINILQASLLAMKRAIDQLTIMPTQVLVDGL-HCPGIAIPAQGIVKGDSKV 125 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 IAAASI+AK RD M H +YP Y F H GYPTA H +++ E G IHR ++ P Sbjct: 126 QEIAAASILAKTARDHEMVEMHARYPQYDFAKHKGYPTAHHLRLLAEHGACEIHRRSYAP 185 Query: 204 LRN 206 ++ Sbjct: 186 VKK 188 >gi|260591769|ref|ZP_05857227.1| ribonuclease HII [Prevotella veroralis F0319] gi|260536053|gb|EEX18670.1| ribonuclease HII [Prevotella veroralis F0319] Length = 200 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL N +NDSKK+S KKR L + I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPTNYKNDLLNDSKKLSAKKRYALRKIIEHDAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + IDK NI A+ A++ A++ L++ P + ++DG ++KGD LS Sbjct: 73 VTPEEIDKINILNASFLAMHRALDQLKMRPEAIIVDGNRFTPYQDLPFTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M +KYP Y + S++GYPT KH++ I++ G + HR ++ Sbjct: 133 IAAASILAKTYRDDYMLSLAEKYPQYDWQSNMGYPTKKHREAIRQYGITPFHRKSY 188 >gi|147669350|ref|YP_001214168.1| ribonuclease H [Dehalococcoides sp. BAV1] gi|289432616|ref|YP_003462489.1| ribonuclease H [Dehalococcoides sp. GT] gi|189043591|sp|A5FR86|RNH2_DEHSB RecName: Full=Ribonuclease HII; Short=RNase HII gi|146270298|gb|ABQ17290.1| Ribonuclease H [Dehalococcoides sp. BAV1] gi|288946336|gb|ADC74033.1| Ribonuclease H [Dehalococcoides sp. GT] Length = 212 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 80/209 (38%), Positives = 111/209 (53%), Gaps = 5/209 (2%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGIND 59 + P E ++R++ +AG+DE GRG LAGPVV A+I+ P + + D Sbjct: 1 MPATVICPSRAEEKLLRKQGFILIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVEMVRD 60 Query: 60 SKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SK +S KRE LY I S A + + ++ ID I AT A+ AVE+L Sbjct: 61 SKVLSPAKREYLYCHIVSMAVTFGVGAVDNEQIDSMGIAPATRLAMKQAVEDL-TCQPDF 119 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 L+ D+P ++ GD++ SIA ASI+AKV+RDRLM +YP Y H G Sbjct: 120 LLVDYLKLPDIPLPQKGIVDGDALCFSIACASIVAKVSRDRLMSKLDMEYPGYYLAKHKG 179 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 Y TA H + I +KG S IHR TF PL+ + Sbjct: 180 YGTALHVECICQKGISPIHRRTFAPLKGM 208 >gi|189502530|ref|YP_001958247.1| hypothetical protein Aasi_1185 [Candidatus Amoebophilus asiaticus 5a2] gi|189497971|gb|ACE06518.1| hypothetical protein Aasi_1185 [Candidatus Amoebophilus asiaticus 5a2] Length = 194 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 77/177 (43%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DEVGRG LAGPVV AA+IL N +NDSKK+S KR L I AI +I Sbjct: 13 AGCDEVGRGCLAGPVVAAAVILPKNYYHPLLNDSKKLSTAKRILLDSIIKEVAIAWAIGE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+H+ ID+ NI A+ A++ A+ L +P+ LIDG+ +I GD+ + Sbjct: 73 ATHEEIDQINIFNASCLAMHRAISQLGQLPQLLLIDGKYFNPYPNIPHQCIIDGDAQFNA 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M +YPDYG++ +VGYPT H++ I+E G + HR +++ Sbjct: 133 IAAASILAKTYRDAYMHQLSIQYPDYGWEKNVGYPTVTHRKAIQELGLTPYHRKSYK 189 >gi|325954163|ref|YP_004237823.1| ribonuclease H [Weeksella virosa DSM 16922] gi|323436781|gb|ADX67245.1| Ribonuclease H [Weeksella virosa DSM 16922] Length = 199 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 69/188 (36%), Positives = 102/188 (54%), Gaps = 3/188 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + + G DE GRG LAGPV+ AA++ I DSK ++ KR L E I Sbjct: 3 RKLTNMDYE--CGCDEAGRGCLAGPVIAAAVVFPNEFFDSTIIDSKLLTKIKRNNLRELI 60 Query: 76 TSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 ++ I +Q ID+ NI A+ +A++ A+ L + P ++DG Sbjct: 61 NTNVLTAEIGFVDNQEIDELNILNASFEAMHRAINKLSIEPDFIIVDGNRFKPYKNIPHE 120 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++KGD+ +SIAAASI+AK RD M+ HK+YP Y +D + GYPT +H++ I+E G S Sbjct: 121 CIVKGDAKYISIAAASILAKTYRDEYMQKIHKEYPMYHWDKNKGYPTKQHREAIREFGVS 180 Query: 195 CIHRLTFR 202 HR +FR Sbjct: 181 PYHRTSFR 188 >gi|262369617|ref|ZP_06062945.1| ribonuclease HII [Acinetobacter johnsonii SH046] gi|262315685|gb|EEY96724.1| ribonuclease HII [Acinetobacter johnsonii SH046] Length = 192 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A +I+ Sbjct: 3 IAGADEAGRGPLVGSVVAAAVILDPNNPIQGLNDSKKLTEKKREKLFVEIQEKALAWAIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI +A+L A+ AVE L + P L+DG IP+ L A++ GD++ Sbjct: 63 EASAAEIDEINILQASLLAMRRAVEQLTIQPEHVLVDGNKIPQGLSMSCEAIVGGDALHA 122 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +KYP +GF H GYPT H + I E G HR +F P+ Sbjct: 123 EISAASILAKVTRDHQMIEMDRKYPQFGFAKHKGYPTKAHFEAIAEHGVIDEHRRSFGPV 182 Query: 205 RN 206 + Sbjct: 183 KK 184 >gi|307565732|ref|ZP_07628201.1| ribonuclease HII [Prevotella amnii CRIS 21A-A] gi|307345558|gb|EFN90926.1| ribonuclease HII [Prevotella amnii CRIS 21A-A] Length = 200 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 74/187 (39%), Positives = 106/187 (56%), Gaps = 4/187 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL +NDSKK+S K R L + I +A+ +I Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPKTYCNEHLNDSKKLSSKTRYALRKDIELNAVAWAIGK 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A++ A++ A++ L + P + +IDG +IKGD LS Sbjct: 73 VTPEEIDRINILNASILAMHRALDQLIIRPEAIIIDGNRFKPYHNIPYTTIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204 IAAASI+AK RD M KKYP Y ++ ++GYPT H+Q I + G + HR +F+ L Sbjct: 133 IAAASILAKTYRDDYMCTLAKKYPQYEWEHNMGYPTKAHRQAIAKYGITPYHRKSFKLLG 192 Query: 205 --RNLSV 209 + L + Sbjct: 193 ETKQLLL 199 >gi|153809167|ref|ZP_01961835.1| hypothetical protein BACCAC_03477 [Bacteroides caccae ATCC 43185] gi|149128143|gb|EDM19363.1| hypothetical protein BACCAC_03477 [Bacteroides caccae ATCC 43185] Length = 200 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P LIDG + VIKGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLSTRPEHLLIDGNRFNKYPGIPHTTVIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAEHGTTPYHRMTF 188 >gi|323339885|ref|ZP_08080154.1| ribonuclease HII [Lactobacillus ruminis ATCC 25644] gi|323092758|gb|EFZ35361.1| ribonuclease HII [Lactobacillus ruminis ATCC 25644] Length = 256 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +LE + V GIDEVGRG LAGPV+ +IL + +NDSK+++ +KRE+L Sbjct: 59 LKLERAYWNFGIENVGGIDEVGRGPLAGPVIACCVILPHDFDLIDVNDSKQLTAEKREKL 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y I A + I ++ ID+ NI++A A+ AVE+L++ P LID I D Sbjct: 119 YGLILERAIDVGIGCVDNRMIDRINIYEAARVAMKQAVESLRIKPEQLLIDAMQIETD-- 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD+ S SI+AASI+AKV RD LM+ + YP YGF + GY T +H +++ Sbjct: 177 IPQKKLIKGDAKSASISAASIVAKVNRDHLMQFYDRIYPGYGFSKNDGYGTKEHLAGLEK 236 Query: 191 KGPSCIHRLTFRPLRN 206 GP IHR+TF P+++ Sbjct: 237 LGPCPIHRMTFEPIKS 252 >gi|127513549|ref|YP_001094746.1| ribonuclease H [Shewanella loihica PV-4] gi|166226652|sp|A3QG89|RNH2_SHELP RecName: Full=Ribonuclease HII; Short=RNase HII gi|126638844|gb|ABO24487.1| RNase HII [Shewanella loihica PV-4] Length = 208 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 3/182 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DEVGRG L G VV AA++LDPNN G+NDSKK+S KKR+ LYE+I + A +S+ Sbjct: 21 AGVDEVGRGPLVGDVVTAAVVLDPNNPIEGLNDSKKLSEKKRDALYEEILAKALDVSVGR 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS--IPEDLPCQAFAVIKGDSIS 143 S ID+ NI AT+ A+ AV L+ P LIDG D + AVIKGD + Sbjct: 81 CSPLEIDELNILHATMLAMQRAVAGLRARPDRVLIDGNRVPDFTDETLEGHAVIKGDGLI 140 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKV RDR M ++YP+YGF H GYPT H + ++ G HR +FRP Sbjct: 141 PAISAASIVAKVVRDREMEALDERYPEYGFAKHKGYPTKAHFEALEAHGVLAEHRKSFRP 200 Query: 204 LR 205 ++ Sbjct: 201 VK 202 >gi|255010102|ref|ZP_05282228.1| ribonuclease HII [Bacteroides fragilis 3_1_12] gi|313147897|ref|ZP_07810090.1| ribonuclease HII [Bacteroides fragilis 3_1_12] gi|313136664|gb|EFR54024.1| ribonuclease HII [Bacteroides fragilis 3_1_12] Length = 201 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 78/176 (44%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L+ P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDGLKTRPQHLLIDGNRFRKYPDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H+++P YG+D + GYPT KH+ I E G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNGLHQEFPCYGWDHNKGYPTKKHRAAIAENGVTPYHRMTF 188 >gi|167758983|ref|ZP_02431110.1| hypothetical protein CLOSCI_01329 [Clostridium scindens ATCC 35704] gi|167663390|gb|EDS07520.1| hypothetical protein CLOSCI_01329 [Clostridium scindens ATCC 35704] Length = 219 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 91/194 (46%), Positives = 118/194 (60%), Gaps = 6/194 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + GIDEVGRG LAGPVV A+IL + +NDSKK+S KKRE LYE Sbjct: 29 YEKEYGA--CRYICGIDEVGRGPLAGPVVAGAVILPKDGSILYLNDSKKLSEKKREALYE 86 Query: 74 KITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ + I ID+ NI +AT +A+ A+ NL+V P L D +IP+ + + Sbjct: 87 EIMERAVATGIGIVGSARIDEINILQATYEAMRMAISNLKVEPDLLLNDAVTIPQ-VSIR 145 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASIIAKVTRDRLM + P YGF S+ GY T H ++E G Sbjct: 146 QVPIIKGDAKSVSIAAASIIAKVTRDRLMVEYDQVLPGYGFASNKGYGTKAHIAGLRELG 205 Query: 193 PSCIHRLTFRPLRN 206 PS IHR TF ++N Sbjct: 206 PSPIHRATF--IKN 217 >gi|73541556|ref|YP_296076.1| ribonuclease HII [Ralstonia eutropha JMP134] gi|97189223|sp|Q470F1|RNH2_RALEJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|72118969|gb|AAZ61232.1| RNase HII [Ralstonia eutropha JMP134] Length = 218 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 110/187 (58%), Gaps = 6/187 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYEKITSSA-II 81 + G+DE GRG LAGPV AA++ DP + G+ DSK ++ KRE LY+KI A Sbjct: 23 RFLCGVDEAGRGPLAGPVYAAAVVFDPAKPMLRGLADSKVLTASKREALYDKICERALGW 82 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I+ A+ + ID NI A++ A+ AV+ V P +DG P+ A++K Sbjct: 83 HIAFATVEEIDTLNILHASMLAMQRAVQGLAEKGVTPDLVQVDGNRCPQVPF-PVEAIVK 141 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS+ +I+AASI+AKV RDR + H+ YP YGFD+H GYPT +H + + G + HR Sbjct: 142 GDSLVKAISAASILAKVARDRELLTLHEVYPQYGFDAHSGYPTPQHLAALAQFGATPHHR 201 Query: 199 LTFRPLR 205 +F P+R Sbjct: 202 RSFAPVR 208 >gi|315023047|gb|EFT36060.1| Ribonuclease HII [Riemerella anatipestifer RA-YM] Length = 194 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 81/185 (43%), Positives = 113/185 (61%), Gaps = 2/185 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 KN V G DE GRG L GPVV AA+ILD N INDSKK+S K R EL I ++ Sbjct: 7 WSKNYIEV-GCDEAGRGCLCGPVVAAAVILDENFEQNLINDSKKLSFKTRNELDLYIKNN 65 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A +I+ S +ID+HNI A++ A++ A++ L + P L+DG +I Sbjct: 66 ALDYAIAELSPAFIDEHNILNASIHAMHLALDKLAIRPELILVDGNRFKPYPFTPHECII 125 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGDS LSIAAASI+AK RD +M H++YP+YG++ + GY T +H++ + + GP+ H Sbjct: 126 KGDSKVLSIAAASILAKNYRDHIMIKLHEEYPEYGWNKNFGYATKQHREALNKLGPTIYH 185 Query: 198 RLTFR 202 R +FR Sbjct: 186 RKSFR 190 >gi|281422598|ref|ZP_06253597.1| ribonuclease HII [Prevotella copri DSM 18205] gi|281403268|gb|EFB33948.1| ribonuclease HII [Prevotella copri DSM 18205] Length = 215 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 71/189 (37%), Positives = 109/189 (57%), Gaps = 3/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE+ + + AG DE GRG LAG V AA+IL P +NDSKK++ KKR+ L E Sbjct: 15 LESHYYKDMVE--AGCDEAGRGCLAGSVYAAAVILPPGYQNAELNDSKKLTDKKRKALRE 72 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A+ ++ + + IDK NI A+ A++ A++ L+V P + ++DG Sbjct: 73 QIERDAVAWAVGIVTPEEIDKINILNASFLAMHRALDQLKVRPEAVIVDGNRFKPYKDLP 132 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++KGD ++IAAASI+AK RD M ++YP Y + + GYPT KH+ I+E G Sbjct: 133 YTTIVKGDGKYMAIAAASILAKTYRDDYMDALAEEYPQYDWKGNKGYPTKKHRAAIREFG 192 Query: 193 PSCIHRLTF 201 + HR+++ Sbjct: 193 VTPYHRMSY 201 >gi|332160606|ref|YP_004297183.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664836|gb|ADZ41480.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859613|emb|CBX69953.1| ribonuclease HII [Yersinia enterocolitica W22703] Length = 198 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 111/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPKLTM-PSLAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++P+YGF H GYPTA H + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLDKLTTFGATEHHRRSFGP 190 Query: 204 LRN 206 ++ Sbjct: 191 VKR 193 >gi|323464643|gb|ADX76796.1| ribonuclease HII [Staphylococcus pseudintermedius ED99] Length = 261 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 118/196 (60%), Gaps = 3/196 (1%) Query: 14 LEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + + G+DEVGRG LAGPVV +A+IL P + GINDSK++S +R L Sbjct: 63 YETEILNVQPEALICGVDEVGRGPLAGPVVASAVILQPGHDFVGINDSKQLSVTQRNLLN 122 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + ++ A+ + ID+HNI+ AT A+Y A+ENL V P LID ++ Sbjct: 123 TSLKEQVRAWAVGVATPEEIDEHNIYVATQIAMYRAIENLSVTPTHYLIDAMTLDHLTA- 181 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD+ S+SIAAASIIAKV RD LM K+YP Y F + GY T KH +K+ Sbjct: 182 PQQAIIKGDAKSVSIAAASIIAKVYRDDLMAEYAKQYPGYDFAQNAGYGTQKHLDGLKQY 241 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 242 GVTTIHRKTFEPIKSM 257 >gi|319892260|ref|YP_004149135.1| Ribonuclease HII [Staphylococcus pseudintermedius HKU10-03] gi|317161956|gb|ADV05499.1| Ribonuclease HII [Staphylococcus pseudintermedius HKU10-03] Length = 261 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 85/196 (43%), Positives = 118/196 (60%), Gaps = 3/196 (1%) Query: 14 LEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + + G+DEVGRG LAGPVV +A+IL P + GINDSK++S +R L Sbjct: 63 YETEILNVQPEALICGVDEVGRGPLAGPVVASAVILQPGHDFVGINDSKQLSVTQRNLLN 122 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + ++ A+ + ID+HNI+ AT A+Y A+ENL V P LID ++ Sbjct: 123 TSLKEQVRAWAVGVATPEEIDEHNIYVATQIAMYRAIENLSVTPTHYLIDAMTLDHLTA- 181 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD+ S+SIAAASIIAKV RD LM K+YP Y F + GY T KH +K+ Sbjct: 182 PQQAIIKGDAKSVSIAAASIIAKVYRDDLMAEYAKQYPGYDFAQNAGYGTQKHLDGLKQY 241 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR TF P++++ Sbjct: 242 GVTTIHRKTFEPIKSM 257 >gi|317473605|ref|ZP_07932894.1| ribonuclease HII [Anaerostipes sp. 3_2_56FAA] gi|316898895|gb|EFV20920.1| ribonuclease HII [Anaerostipes sp. 3_2_56FAA] Length = 225 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 113/196 (57%), Gaps = 6/196 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + GIDEVGRG AGPVV AA+IL + +NDSKKIS KKRE L Sbjct: 33 FSYEREYER--YSHICGIDEVGRGPFAGPVVAAAVILPRDCDILYLNDSKKISPKKREAL 90 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+KI A + I AS + ID+ NI AT +A+ AV NL V P L D +IP Sbjct: 91 YDKIYEKALAVGIGMASEKVIDEINILNATYEAMRTAVSNLPVEPDLLLNDAVTIPGIGT 150 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S SIAAASI+AKVTRDR+M + YP Y F + GY T H + IKE Sbjct: 151 -EQVPIIKGDAKSASIAAASIVAKVTRDRMMEEYDQLYPQYQFAKNKGYGTKAHIEAIKE 209 Query: 191 KGPSCIHRLTFRPLRN 206 G +HR +F +R Sbjct: 210 YGICTLHRKSF--VRK 223 >gi|163782691|ref|ZP_02177688.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Hydrogenivirga sp. 128-5-R1-1] gi|159882264|gb|EDP75771.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Hydrogenivirga sp. 128-5-R1-1] Length = 190 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 83/191 (43%), Positives = 114/191 (59%), Gaps = 5/191 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + + VAG+DE GRG LAGPVV +A+IL P PF DSKK+S K+REELY Sbjct: 3 EHEEKFWREGL-LVAGVDEAGRGPLAGPVVASAVILPPFTEPFLKGDSKKLSRKEREELY 61 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I +A + + ID+ NI++AT A+ A+++L+ + D + E Sbjct: 62 ELIKETALAVGTAVVDSAVIDRINIYQATKLAMKRALDDLKHPFDVVISDYVKLEEFNCL 121 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 KGD SLS A AS++AKV RDR+M H+ YP+Y F H GYPT KH+++IK+ Sbjct: 122 PLV---KGDERSLSCACASVVAKVLRDRIMERFHEVYPEYEFVKHKGYPTKKHRELIKKF 178 Query: 192 GPSCIHRLTFR 202 G + IHR +FR Sbjct: 179 GITEIHRRSFR 189 >gi|298504765|gb|ADI83488.1| ribonuclease HII [Geobacter sulfurreducens KN400] Length = 211 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 87/205 (42%), Positives = 114/205 (55%), Gaps = 2/205 (0%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 + P+ ++ E+ + +AGIDE GRG LAGPVV AA+IL G++DSK Sbjct: 5 LFDHEPQPAVWDFESRAARRGYRTIAGIDEAGRGPLAGPVVAAAVILPFGTDLPGVDDSK 64 Query: 62 KISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++ +R++L+ I +A I + A H+ ID+ NI +AT A P L+ Sbjct: 65 KLTPARRDDLFTLIQGTALAIGVGVADHKVIDRINILQAT-LAAMREAVECLTDPPDYLL 123 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P LP + KGDS S+SIAAASIIAKVTRDRLM + YP YGF H GY Sbjct: 124 VDGISPVPLPVAQQTIKKGDSASISIAAASIIAKVTRDRLMAEYDQLYPGYGFAEHKGYG 183 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 +A H I GPS IHR TFR +R Sbjct: 184 SASHMAAIAALGPSPIHRTTFRGVR 208 >gi|289548139|ref|YP_003473127.1| ribonuclease H [Thermocrinis albus DSM 14484] gi|289181756|gb|ADC89000.1| Ribonuclease H [Thermocrinis albus DSM 14484] Length = 203 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 110/195 (56%), Gaps = 5/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E EK + VAG+DE GRG LAGP+V A+IL P PF DSKK+S +REE Y Sbjct: 5 YELPFWEKGL-LVAGVDEAGRGPLAGPLVACAVILPPYTEPFLKGDSKKLSPSEREEAYR 63 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A I + + ID+ NI +AT A+ A+E+L+ + D + D Sbjct: 64 IIKERALSIGTAVVDSEVIDRINILQATRLAMKRALEDLKHPYDVVITDWVKLDVDNCI- 122 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A+ KGD SL A AS++AKV RD++M H+ YP Y F SH GYPT +H Q + + Sbjct: 123 --AIPKGDERSLCCACASVVAKVLRDKIMEHYHRLYPQYDFASHKGYPTKEHLQRLLQYR 180 Query: 193 PSCIHRLTFRPLRNL 207 S IHR +FRP++ L Sbjct: 181 ESPIHRKSFRPVKAL 195 >gi|39995755|ref|NP_951706.1| ribonuclease HII [Geobacter sulfurreducens PCA] gi|81703214|sp|Q74FG0|RNH2_GEOSL RecName: Full=Ribonuclease HII; Short=RNase HII gi|39982519|gb|AAR33979.1| ribonuclease HII [Geobacter sulfurreducens PCA] Length = 217 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 87/205 (42%), Positives = 114/205 (55%), Gaps = 2/205 (0%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 + P+ ++ E+ + +AGIDE GRG LAGPVV AA+IL G++DSK Sbjct: 5 LFDHEPQPAVWDFESRAARRGYRTIAGIDEAGRGPLAGPVVAAAVILPFGTDLPGVDDSK 64 Query: 62 KISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++ +R++L+ I +A I + A H+ ID+ NI +AT A P L+ Sbjct: 65 KLTPARRDDLFTLIQGTALAIGVGVADHKVIDRINILQAT-LAAMREAVECLTDPPDYLL 123 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 P LP + KGDS S+SIAAASIIAKVTRDRLM + YP YGF H GY Sbjct: 124 VDGISPVPLPVAQQTIKKGDSASISIAAASIIAKVTRDRLMAEYDQLYPGYGFAEHKGYG 183 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 +A H I GPS IHR TFR +R Sbjct: 184 SASHMAAIAALGPSPIHRTTFRGVR 208 >gi|187928381|ref|YP_001898868.1| ribonuclease HII [Ralstonia pickettii 12J] gi|238691815|sp|B2UBB5|RNH2_RALPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|187725271|gb|ACD26436.1| Ribonuclease H [Ralstonia pickettii 12J] Length = 232 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 74/193 (38%), Positives = 113/193 (58%), Gaps = 5/193 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 ++ + G+DE GRG LAGPV AA++L+P G+ DSK ++ +KRE LY++I Sbjct: 20 AAKRARRILCGVDEAGRGPLAGPVTAAAVVLNPRKPIKGLADSKILTARKREALYDEIVE 79 Query: 78 SA-IISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPEDLPCQA 133 A ++ A+ + ID+ NI AT+ A+ AV+ + +P +DG P+ Sbjct: 80 KALAWHVAEATVEEIDRINILHATMLAMQRAVQGVAALGTLPDLVQVDGNRCPQVAFA-V 138 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++KGD++ +I+AASI+AKVTRDR + H ++P YGFD H GY T +H I G Sbjct: 139 EAIVKGDALVPAISAASILAKVTRDRQLAALHIEFPLYGFDVHAGYGTPQHLAAIDLHGV 198 Query: 194 SCIHRLTFRPLRN 206 + HR +F P+R Sbjct: 199 TPHHRRSFAPVRR 211 >gi|119477116|ref|ZP_01617352.1| ribonuclease HII [marine gamma proteobacterium HTCC2143] gi|119449479|gb|EAW30717.1| ribonuclease HII [marine gamma proteobacterium HTCC2143] Length = 201 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAG VV AA+ILDP N G++DSKK++ KKRE L+ +I A + Sbjct: 12 LLAGVDEVGRGPLAGDVVAAAVILDPANPIRGLDDSKKLTEKKREALFPEIQEKALSWFV 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + AS + ID+ NI +A+L A+ AVE L + P L+DG +P A AV++GDS Sbjct: 72 ARASVREIDELNILQASLLAMKRAVEGLVLQPEHVLVDGNKLPR-WAYSAEAVVRGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASI+AKV RDR M +YP YGF H GYPT H + G + IHR +F P Sbjct: 131 QVIGAASILAKVVRDREMVAFDDEYPGYGFAGHKGYPTRVHMTALDVLGVTPIHRSSFGP 190 Query: 204 LRN 206 ++ Sbjct: 191 VKR 193 >gi|94266071|ref|ZP_01289789.1| Ribonuclease H [delta proteobacterium MLMS-1] gi|93453354|gb|EAT03785.1| Ribonuclease H [delta proteobacterium MLMS-1] Length = 236 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 111/200 (55%), Gaps = 4/200 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E + + VAG DE GRG LAGPVV A ++L + DSK++S +R E Sbjct: 18 TLAFERSLWAQGYRLVAGTDEAGRGPLAGPVVAACVVLPVDCR-SPFQDSKQLSASRRRE 76 Query: 71 LYEKIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L ++ A + + AS ID NI +A+L A+ AV LQ P L+DG Sbjct: 77 LEAELNALPGAAVGVGIASVAEIDGLNILQASLLAMRKAVTALQPPPDFLLVDG-KFTVP 135 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A+IKGDS S SIAAASI+AK RD+LM H++YP Y F H GY TA+H++++ Sbjct: 136 LELPQQALIKGDSRSASIAAASIVAKERRDQLMADLHRQYPQYNFIQHKGYATAEHRRLL 195 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 GP HR +F+P+R L Sbjct: 196 HRFGPCPEHRRSFKPVRELL 215 >gi|331703424|ref|YP_004400111.1| ribonuclease H II [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801979|emb|CBW54133.1| Ribonuclease H II [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 207 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 1/191 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + N+ ++G DE GRG LAGP+VVA++IL P+ I DSKK++ K R+ L+++I + Sbjct: 13 LDHNITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNPKTRQILFDEIIKN 72 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 I S + +D+ N +A+L + NL++ P LIDG + ++I Sbjct: 73 CLDYQIIVISSKQVDELNPLQASLLGFKTTISNLKITPDLGLIDGNQNINLENIKTLSII 132 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD S SIA +SI+AKVTRD+++ + YP+YGF SH GY T +H I++ G IH Sbjct: 133 KGDDKSFSIACSSILAKVTRDKILDEYDQIYPNYGFKSHKGYCTKQHLLAIQKYGVLDIH 192 Query: 198 RLTFRPLRNLS 208 R +++P++ +S Sbjct: 193 RKSYKPIKKIS 203 >gi|299822635|ref|ZP_07054521.1| ribonuclease H [Listeria grayi DSM 20601] gi|299816164|gb|EFI83402.1| ribonuclease H [Listeria grayi DSM 20601] Length = 259 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 90/194 (46%), Positives = 122/194 (62%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E+ + +AG+DEVGRG LAGPVV AA+IL + GINDSK++S +KR+ Y Sbjct: 61 QFESEYLKAGYSRIAGVDEVGRGPLAGPVVAAAVILPNDFSVTGINDSKQLSEEKRQYYY 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ I IS SH+ ID+ NI++AT A+ A++NL P LID Sbjct: 121 DIIREQAVSIGISIQSHEVIDQVNIYEATKLAMAEALDNLDPAPDFTLIDAMK--LGYSK 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 Q A+IKGD+ S+SIAAASIIAKVTRD LM+ A + YP Y F ++GY T H + ++ Sbjct: 179 QELAIIKGDTKSISIAAASIIAKVTRDSLMKEAEQLYPGYDFAHNMGYGTKLHLAGLDQQ 238 Query: 192 GPSCIHRLTFRPLR 205 G IHRLTF P++ Sbjct: 239 GVCPIHRLTFAPVK 252 >gi|86134237|ref|ZP_01052819.1| Ribonuclease HII [Polaribacter sp. MED152] gi|85821100|gb|EAQ42247.1| Ribonuclease HII [Polaribacter sp. MED152] Length = 199 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 67/183 (36%), Positives = 103/183 (56%), Gaps = 1/183 (0%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 AG DE GRG L+GPVV AA+IL N +NDSK++S K R+ L I +AI Sbjct: 7 SGCLLEAGTDEAGRGCLSGPVVAAAVILPKNFSHPLLNDSKQLSEKNRQILKPIIEENAI 66 Query: 81 IS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +S + +DK N+ +A++ ++ A+E L V P ++DG ++KG Sbjct: 67 AHAVSFVYQEEVDKINVLQASITGMHRAIEALDVTPEFIIVDGNKFRNYKEIPHETIVKG 126 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ LSIAAAS++AK RD M H+++ Y + + GYPT +H+ I++ G + HR Sbjct: 127 DAKFLSIAAASVLAKTYRDDYMEKIHQEFSMYNWQKNKGYPTKEHRDAIRKFGATIHHRK 186 Query: 200 TFR 202 +F+ Sbjct: 187 SFK 189 >gi|120555445|ref|YP_959796.1| ribonuclease H [Marinobacter aquaeolei VT8] gi|189043693|sp|A1U3P0|RNH2_MARAV RecName: Full=Ribonuclease HII; Short=RNase HII gi|120325294|gb|ABM19609.1| RNase HII [Marinobacter aquaeolei VT8] Length = 227 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 110/183 (60%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS-AIIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ KKR LY+ I + A S Sbjct: 16 SLLAGVDEVGRGPLIGAVVTAAVILDPARPIPGLADSKKLTEKKRLRLYDDILENAAAWS 75 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + ID+ NI++AT+ A+ AVE L + P L+DG P+ + VIKGDS Sbjct: 76 LGRCEASEIDELNIYQATMLAMKRAVEGLSIAPEYVLVDGNRCPK-WQWPSEPVIKGDSR 134 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR M ++P +G H GYPT H + + G + HR +FR Sbjct: 135 VEAISAASILAKVTRDREMEALDVRFPGFGLAQHKGYPTPVHLEALNRLGVTPEHRRSFR 194 Query: 203 PLR 205 P++ Sbjct: 195 PVK 197 >gi|225019936|ref|ZP_03709128.1| hypothetical protein CLOSTMETH_03890 [Clostridium methylpentosum DSM 5476] gi|224947300|gb|EEG28509.1| hypothetical protein CLOSTMETH_03890 [Clostridium methylpentosum DSM 5476] Length = 324 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 115/191 (60%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E + E + G+DE GRG LAGPV AA IL + GINDSKK++ KKRE L Sbjct: 4 YEYDR---EAGAEVLCGVDEAGRGPLAGPVYAAACILPLDAEIEGINDSKKLTEKKREAL 60 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE+I A +++AS + ID NI +AT A+ AVE L++ P LIDG P D+ Sbjct: 61 YEQIRERALDYCVATASVEEIDSINILQATFLAMRRAVEGLRLRPGLVLIDGNKNP-DVG 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VIKGD+ S +IAAASI+AKV RDR M+ +YP+Y F H GY T H + + E Sbjct: 120 VHSRCVIKGDATSANIAAASILAKVERDRCMQALDAEYPEYCFAKHKGYGTKLHTEKLLE 179 Query: 191 KGPSCIHRLTF 201 G S +HR +F Sbjct: 180 YGISPVHRRSF 190 >gi|296127016|ref|YP_003634268.1| ribonuclease H [Brachyspira murdochii DSM 12563] gi|296018832|gb|ADG72069.1| Ribonuclease H [Brachyspira murdochii DSM 12563] Length = 232 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 86/216 (39%), Positives = 118/216 (54%), Gaps = 15/216 (6%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----------PN 51 + +SI ++ F E + GIDEVGRG L GPV VAA+I+ Sbjct: 8 YNSSIIDK--FAYEKEYLSLGYKYICGIDEVGRGCLFGPVTVAAVIMPLELNNDVEVARE 65 Query: 52 NIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN 110 NI +DSKKIS KKREELY+KI S A S+ S + ID+ NI+ AT A+ +AV N Sbjct: 66 NIVEEADDSKKISAKKREELYDKIISKALCYSVYSVDAKTIDEINIYNATKLAMVNAVRN 125 Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 L + P LID + D + ++ KGD S SI ASI+AKV RDR+M + Y Sbjct: 126 LNIKPDILLIDAVKLDID--IKQCSITKGDFKSYSIGCASIVAKVERDRMMNELPEVYQK 183 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 Y + GY T +H + I+ G S +HR +F P+++ Sbjct: 184 YKVAKNKGYGTKEHMKAIEMYGASDMHRYSFEPIKS 219 >gi|326336306|ref|ZP_08202477.1| ribonuclease HII [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691480|gb|EGD33448.1| ribonuclease HII [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 197 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 101/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPV AA+IL + +NDSK+++ K+R EL I A ++ Sbjct: 11 AGTDEAGRGCLAGPVTAAAVILPEDFYHPLLNDSKQMTEKQRNELRSIIEMQALSYAVVH 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S Q ID+ NI A+++A+ A++ L + P ++DG +KGD+ + Sbjct: 71 LSPQRIDQINILNASIEAMQQALDKLSLTPEFIVVDGNRFKPYKEIPYSCQVKGDARFMR 130 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD M HK++P Y +D + GYPT +H+ I E G HR TF+ + Sbjct: 131 IAAASVLAKTHRDAYMESLHKQFPMYHWDKNKGYPTREHRAAILEFGACEYHRKTFQLI 189 >gi|262375455|ref|ZP_06068688.1| ribonuclease HII [Acinetobacter lwoffii SH145] gi|262309709|gb|EEY90839.1| ribonuclease HII [Acinetobacter lwoffii SH145] Length = 195 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 87/182 (47%), Positives = 116/182 (63%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DE GRG L G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A +I+ Sbjct: 3 IAGVDEAGRGPLVGSVVAAAVILDPNNPIEGLNDSKKLTEKKREKLFIEIQEKALAWAIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+HNI +A+L A+ AVE L V P L+DG IP+ L AV+ GD++ Sbjct: 63 EASAAEIDEHNILQASLLAMRRAVEALPVQPEHVLVDGNKIPQGLAMSCDAVVGGDALHA 122 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRD M +K+P +GF H GYPT H + I G HR +F P+ Sbjct: 123 EISAASILAKVTRDHQMIEMDQKHPQFGFAKHKGYPTKAHFEAIALHGVIDEHRRSFGPV 182 Query: 205 RN 206 + Sbjct: 183 KK 184 >gi|323964924|gb|EGB60390.1| ribonuclease HII [Escherichia coli M863] gi|327255162|gb|EGE66765.1| ribonuclease HII family protein [Escherichia coli STEC_7v] Length = 198 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 108/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPTRPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|239636276|ref|ZP_04677278.1| putative ribonuclease HII [Staphylococcus warneri L37603] gi|239597631|gb|EEQ80126.1| putative ribonuclease HII [Staphylococcus warneri L37603] Length = 256 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 14 LEAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + +N + GIDEVGRG LAGPVV A+IL+P + G+NDSKK+S K R L Sbjct: 61 YENDILAQNNKAIICGIDEVGRGPLAGPVVTCAVILNPGHRYLGLNDSKKVSAKNRVILN 120 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +++ + A+ ID+ NI++AT A+ A++ L + P LID ++ D Sbjct: 121 QQLKEGVTDYAYGIATSAEIDEMNIYQATRLAMQRAIDQLNIRPTQLLID--AMTLDNEI 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AK RD M+ K+YP Y F+ +VGY T H + I + Sbjct: 179 SQTSIIKGDAKSVSIAAASIMAKEYRDHYMKELAKQYPGYDFEKNVGYGTKAHLEGIAQN 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR TF P++++ Sbjct: 239 GVISEHRKTFEPIKSIL 255 >gi|170768530|ref|ZP_02902983.1| ribonuclease HII [Escherichia albertii TW07627] gi|170122634|gb|EDS91565.1| ribonuclease HII [Escherichia albertii TW07627] Length = 198 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLP-VPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M YP YGF H GYPTA H + + E G + HR +F P Sbjct: 130 PEISAASILAKVTRDAEMAALDTVYPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|328952474|ref|YP_004369808.1| Ribonuclease H [Desulfobacca acetoxidans DSM 11109] gi|328452798|gb|AEB08627.1| Ribonuclease H [Desulfobacca acetoxidans DSM 11109] Length = 215 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 71/194 (36%), Positives = 104/194 (53%), Gaps = 2/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +LE R + + +AG+DEVGRG LAGPVV AA+IL +++ + DSK+++ +RE Sbjct: 19 DLEEAYRRQGIRFIAGVDEVGRGPLAGPVVAAAVILASDSVFPRLTDSKQLTPARREFFD 78 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ A +I I+ I A+ V+ ++ + Sbjct: 79 RQVRDQALAFAIQEVGVPEIESLGILSAS-LKAMALAVQSLVLKPELVLIDGPWGLQIQV 137 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 Q +IKGD LSIAAAS++AKV RDR M+ H+ YP Y F SH GY T +H + I+ Sbjct: 138 QQQPIIKGDQRCLSIAAASVLAKVYRDRQMQAIHELYPHYNFASHKGYGTREHLEAIRRW 197 Query: 192 GPSCIHRLTFRPLR 205 GP +HR TFR +R Sbjct: 198 GPCPVHRRTFRGVR 211 >gi|327441071|dbj|BAK17436.1| ribonuclease HII [Solibacillus silvestris StLB046] Length = 257 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 76/199 (38%), Positives = 115/199 (57%), Gaps = 4/199 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70 + +A +AG DE GRG LAGPVV AA+IL + G+NDSK++S +KR + Sbjct: 57 LQFDASYLPYEHAYIAGTDEAGRGPLAGPVVTAAVILPNHCQELLGVNDSKQLSKEKRNQ 116 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 E+I A ++ S + ID+ NI++AT ++ ++E L+V P L D ++ Sbjct: 117 FAERIKKHALYYAVHFQSAEEIDRLNIYEATRQSMLKSIEALEVTPNYILAD--AMTLST 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ SL+IAAASI+AK RD M ++P YGF H GY T +H + I Sbjct: 175 SIPQASIIKGDARSLAIAAASILAKTARDDYMEKLDLEFPQYGFAQHAGYGTKQHLEAIA 234 Query: 190 EKGPSCIHRLTFRPLRNLS 208 + GP+ HR TF P++++ Sbjct: 235 QYGPTIHHRKTFEPIKSIL 253 >gi|157372011|ref|YP_001480000.1| ribonuclease HII [Serratia proteamaculans 568] gi|166991070|sp|A8GID2|RNH2_SERP5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157323775|gb|ABV42872.1| Ribonuclease H [Serratia proteamaculans 568] Length = 197 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S Sbjct: 11 TLIAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIVEKALSWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ ++ AV+KGDS Sbjct: 71 LGRAEPDEIDQLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCPKLPM-RSQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +++PDYGF H GYPTA H + + G + HR +F Sbjct: 130 VAEISAASILAKVTRDREMTELDREFPDYGFAQHKGYPTAFHLERLAALGATEHHRRSFA 189 Query: 203 PLRN 206 P+R Sbjct: 190 PVRR 193 >gi|94267010|ref|ZP_01290655.1| Ribonuclease H [delta proteobacterium MLMS-1] gi|93452284|gb|EAT02925.1| Ribonuclease H [delta proteobacterium MLMS-1] Length = 236 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 111/200 (55%), Gaps = 4/200 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E + + VAG DE GRG LAGPVV A ++L + DSK++S +R E Sbjct: 18 TLAFERSLWAQGYRLVAGTDEAGRGPLAGPVVAACVVLPVDCR-SPFQDSKQLSASRRRE 76 Query: 71 LYEKIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L ++ A + + AS ID NI +A+L A+ AV LQ P L+DG Sbjct: 77 LEAELNALPGAAVGVGIASVAEIDGLNILQASLLAMRKAVTALQPAPDFLLVDG-KFTIP 135 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A+IKGDS S SIAAASI+AK RD+LM H++YP Y F H GY TA+H++++ Sbjct: 136 LELPQQALIKGDSRSASIAAASIVAKERRDQLMADLHRQYPQYNFIQHKGYATAEHRRLL 195 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 GP HR +F+P+R L Sbjct: 196 HRFGPCPEHRRSFKPVRELL 215 >gi|318606916|emb|CBY28414.1| ribonuclease HII [Yersinia enterocolitica subsp. palearctica Y11] Length = 198 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 111/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPKQPIVGLADSKKLSEKRRLSLYDEITDKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPKLAM-PSLAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M ++P+YGF H GYPTA H + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMTELDLQFPEYGFAQHKGYPTAVHLDKLTTFGATEHHRRSFGP 190 Query: 204 LRN 206 ++ Sbjct: 191 VKR 193 >gi|15673275|ref|NP_267449.1| ribonuclease HII [Lactococcus lactis subsp. lactis Il1403] gi|13878721|sp|Q9CG17|RNH2_LACLA RecName: Full=Ribonuclease HII; Short=RNase HII gi|12724270|gb|AAK05391.1|AE006361_7 ribonuclease HII [Lactococcus lactis subsp. lactis Il1403] gi|326406831|gb|ADZ63902.1| ribonuclease HII [Lactococcus lactis subsp. lactis CV56] Length = 258 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + + +AGIDEVGRG LAGPVV AA+IL N G+NDSKK+ K + Sbjct: 59 LEFEKELYGQEIQLIAGIDEVGRGPLAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A I I + ID+ NI++AT A+ AV L V P LID ++ D P Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSVKPEHLLID--AMVLDFP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKVTRD +M+ ++P+Y F+ + GY TAKH + + + Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKEFALEFPEYDFEHNAGYGTAKHLEALTK 236 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++ + Sbjct: 237 YGITRIHRKSYEPIKTM 253 >gi|218547638|ref|YP_002381429.1| ribonuclease HII [Escherichia fergusonii ATCC 35469] gi|293418068|ref|ZP_06660690.1| ribonuclease HII [Escherichia coli B185] gi|331651088|ref|ZP_08352116.1| ribonuclease HII [Escherichia coli M718] gi|331661557|ref|ZP_08362481.1| ribonuclease HII [Escherichia coli TA143] gi|226736822|sp|B7LW62|RNH2_ESCF3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|218355179|emb|CAQ87786.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia fergusonii ATCC 35469] gi|291430786|gb|EFF03784.1| ribonuclease HII [Escherichia coli B185] gi|331051542|gb|EGI23591.1| ribonuclease HII [Escherichia coli M718] gi|331061472|gb|EGI33435.1| ribonuclease HII [Escherichia coli TA143] Length = 198 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 108/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ A AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PAMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|15799865|ref|NP_285877.1| ribonuclease HII [Escherichia coli O157:H7 EDL933] gi|15829439|ref|NP_308212.1| ribonuclease HII [Escherichia coli O157:H7 str. Sakai] gi|168752165|ref|ZP_02777187.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4113] gi|168758706|ref|ZP_02783713.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4401] gi|168764954|ref|ZP_02789961.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4501] gi|168769950|ref|ZP_02794957.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4486] gi|168777709|ref|ZP_02802716.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4196] gi|168782075|ref|ZP_02807082.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4076] gi|168789292|ref|ZP_02814299.1| ribonuclease HII [Escherichia coli O157:H7 str. EC869] gi|168802471|ref|ZP_02827478.1| ribonuclease HII [Escherichia coli O157:H7 str. EC508] gi|187731145|ref|YP_001878985.1| ribonuclease HII [Shigella boydii CDC 3083-94] gi|194435006|ref|ZP_03067247.1| ribonuclease HII [Shigella dysenteriae 1012] gi|195939879|ref|ZP_03085261.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4024] gi|208805984|ref|ZP_03248321.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4206] gi|208813645|ref|ZP_03254974.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4045] gi|208821027|ref|ZP_03261347.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4042] gi|209400402|ref|YP_002268791.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4115] gi|217325357|ref|ZP_03441441.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14588] gi|218698603|ref|YP_002406232.1| ribonuclease HII [Escherichia coli IAI39] gi|254791316|ref|YP_003076153.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14359] gi|261226937|ref|ZP_05941218.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O157:H7 str. FRIK2000] gi|261255341|ref|ZP_05947874.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O157:H7 str. FRIK966] gi|291281005|ref|YP_003497823.1| Ribonuclease HII [Escherichia coli O55:H7 str. CB9615] gi|24638183|sp|Q8X8X6|RNH2_ECO57 RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736818|sp|B7NIE5|RNH2_ECO7I RecName: Full=Ribonuclease HII; Short=RNase HII gi|238056776|sp|B5Z0G2|RNH2_ECO5E RecName: Full=Ribonuclease HII; Short=RNase HII gi|238689501|sp|B2U326|RNH2_SHIB3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|12512911|gb|AAG54485.1|AE005194_6 RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O157:H7 str. EDL933] gi|13359641|dbj|BAB33608.1| RNAse HII [Escherichia coli O157:H7 str. Sakai] gi|187428137|gb|ACD07411.1| ribonuclease HII [Shigella boydii CDC 3083-94] gi|187767120|gb|EDU30964.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4196] gi|188013909|gb|EDU52031.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4113] gi|189000369|gb|EDU69355.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4076] gi|189354506|gb|EDU72925.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4401] gi|189361051|gb|EDU79470.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4486] gi|189365141|gb|EDU83557.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4501] gi|189371107|gb|EDU89523.1| ribonuclease HII [Escherichia coli O157:H7 str. EC869] gi|189375551|gb|EDU93967.1| ribonuclease HII [Escherichia coli O157:H7 str. EC508] gi|194416742|gb|EDX32870.1| ribonuclease HII [Shigella dysenteriae 1012] gi|208725785|gb|EDZ75386.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4206] gi|208734922|gb|EDZ83609.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4045] gi|208741150|gb|EDZ88832.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4042] gi|209161802|gb|ACI39235.1| ribonuclease HII [Escherichia coli O157:H7 str. EC4115] gi|209745714|gb|ACI71164.1| RNAse HII [Escherichia coli] gi|209745716|gb|ACI71165.1| RNAse HII [Escherichia coli] gi|209745718|gb|ACI71166.1| RNAse HII [Escherichia coli] gi|209745720|gb|ACI71167.1| RNAse HII [Escherichia coli] gi|209745722|gb|ACI71168.1| RNAse HII [Escherichia coli] gi|217321578|gb|EEC30002.1| ribonuclease HII [Escherichia coli O157:H7 str. TW14588] gi|218368589|emb|CAR16326.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli IAI39] gi|254590716|gb|ACT70077.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O157:H7 str. TW14359] gi|290760878|gb|ADD54839.1| Ribonuclease HII [Escherichia coli O55:H7 str. CB9615] gi|320173336|gb|EFW48539.1| Ribonuclease HII [Shigella dysenteriae CDC 74-1112] gi|320180910|gb|EFW55832.1| Ribonuclease HII [Shigella boydii ATCC 9905] gi|320186605|gb|EFW61330.1| Ribonuclease HII [Shigella flexneri CDC 796-83] gi|320190291|gb|EFW64941.1| Ribonuclease HII [Escherichia coli O157:H7 str. EC1212] gi|320639989|gb|EFX09574.1| ribonuclease HII [Escherichia coli O157:H7 str. G5101] gi|320644759|gb|EFX13803.1| ribonuclease HII [Escherichia coli O157:H- str. 493-89] gi|320652915|gb|EFX21153.1| ribonuclease HII [Escherichia coli O157:H- str. H 2687] gi|320658303|gb|EFX26032.1| ribonuclease HII [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663613|gb|EFX30897.1| ribonuclease HII [Escherichia coli O55:H7 str. USDA 5905] gi|320668926|gb|EFX35721.1| ribonuclease HII [Escherichia coli O157:H7 str. LSU-61] gi|326339762|gb|EGD63570.1| Ribonuclease HII [Escherichia coli O157:H7 str. 1044] gi|326345096|gb|EGD68839.1| Ribonuclease HII [Escherichia coli O157:H7 str. 1125] gi|332095122|gb|EGJ00154.1| ribonuclease HII family protein [Shigella boydii 5216-82] gi|332097620|gb|EGJ02597.1| ribonuclease HII family protein [Shigella dysenteriae 155-74] Length = 198 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 108/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ A AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PAMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|237734601|ref|ZP_04565082.1| ribonuclease HII [Mollicutes bacterium D7] gi|229382421|gb|EEO32512.1| ribonuclease HII [Coprobacillus sp. D7] Length = 206 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 72/190 (37%), Positives = 108/190 (56%), Gaps = 4/190 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 + + G+DEVGRG +AG +VVA ++ INDSK++S KKRE LY+ I +A Sbjct: 12 QAGYDYIIGLDEVGRGPMAGELVVAGVVFPKGFYDERINDSKQLSAKKREVLYDLIIENA 71 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I S +D+ N+++A+ + +E L+ AL D ++IK Sbjct: 72 LYYDIEIISVADVDRLNVYQASKQGMEKCLELLKKEKMFALTDA---MPIDYPDHLSIIK 128 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S+SIA ASI+AKVTRDRLM +YP+YGF+ H GY T H++ + + G IHR Sbjct: 129 GDAKSISIAGASILAKVTRDRLMEAYALEYPEYGFEKHKGYVTKAHKEALGKYGVCPIHR 188 Query: 199 LTFRPLRNLS 208 +F P++ + Sbjct: 189 KSFGPVQKIL 198 >gi|332532224|ref|ZP_08408105.1| ribonuclease HII [Pseudoalteromonas haloplanktis ANT/505] gi|332038322|gb|EGI74767.1| ribonuclease HII [Pseudoalteromonas haloplanktis ANT/505] Length = 200 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 80/191 (41%), Positives = 110/191 (57%), Gaps = 2/191 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + N+ +AG+DEVGRG L G VV AA+ILDP G+ DSKK++ KKR+ L +I Sbjct: 2 QIDRPNVSLIAGVDEVGRGPLVGDVVTAAVILDPTKPIAGLADSKKLTDKKRQALAIEIK 61 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A + S ID+ NI AT+ A+ AVE L P IDG +P+ A A Sbjct: 62 EKALCYAYGRCSPTEIDELNILHATMLAMSRAVEALSTQPEFVFIDGNRLPKLTM-PAQA 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGDS+ I+AASI+AKV RD M ++P+YGF H GYPT H +++ G Sbjct: 121 VVKGDSLVAEISAASILAKVARDDEMLELDARHPEYGFAGHKGYPTKAHFAALEQYGAID 180 Query: 196 IHRLTFRPLRN 206 HR +F+P++ Sbjct: 181 EHRKSFKPVQR 191 >gi|26246129|ref|NP_752168.1| ribonuclease HII [Escherichia coli CFT073] gi|227884904|ref|ZP_04002709.1| ribonuclease HII [Escherichia coli 83972] gi|300993596|ref|ZP_07180452.1| ribonuclease HII [Escherichia coli MS 45-1] gi|301049903|ref|ZP_07196829.1| ribonuclease HII [Escherichia coli MS 185-1] gi|29336711|sp|Q8FL06|RNH2_ECOL6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|26106526|gb|AAN78712.1|AE016755_212 Ribonuclease HII [Escherichia coli CFT073] gi|227838042|gb|EEJ48508.1| ribonuclease HII [Escherichia coli 83972] gi|300298356|gb|EFJ54741.1| ribonuclease HII [Escherichia coli MS 185-1] gi|300406519|gb|EFJ90057.1| ribonuclease HII [Escherichia coli MS 45-1] gi|307552033|gb|ADN44808.1| ribonuclease HII [Escherichia coli ABU 83972] gi|315294587|gb|EFU53934.1| ribonuclease HII [Escherichia coli MS 153-1] gi|323975649|gb|EGB70745.1| ribonuclease HII [Escherichia coli TW10509] Length = 198 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 108/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|218283550|ref|ZP_03489540.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989] gi|218215818|gb|EEC89356.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989] Length = 202 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 77/201 (38%), Positives = 110/201 (54%), Gaps = 8/201 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 +RP LE ++N V G+DE GRG +AGP++VA +I I+DSKK+S KK Sbjct: 3 DRP---LEHDYWDQN-QSVLGMDEAGRGPIAGPLMVAGVIFPKGYHNELIDDSKKLSEKK 58 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L++ I A I + IDK NI++AT +A+ Q ++ Sbjct: 59 REALFKTIIQDALYYQILVVDEKTIDKKNIYRATQEAMMEIANKAQ---CDFVLSDAMPL 115 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D+ A++KGD SLSIAAASI+AKVTRDR M+ + YP YG H GYPT H + Sbjct: 116 PDIDKPFQAIVKGDQKSLSIAAASILAKVTRDRWMKKLDEMYPQYGLAKHKGYPTKAHIE 175 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 + + G +R ++ P++ L Sbjct: 176 ALNQYGLQDFYRRSYGPVKKL 196 >gi|110640402|ref|YP_668130.1| ribonuclease HII [Escherichia coli 536] gi|170680885|ref|YP_001742311.1| ribonuclease HII [Escherichia coli SMS-3-5] gi|191172810|ref|ZP_03034347.1| ribonuclease HII [Escherichia coli F11] gi|215485344|ref|YP_002327775.1| ribonuclease HII [Escherichia coli O127:H6 str. E2348/69] gi|218688058|ref|YP_002396270.1| ribonuclease HII [Escherichia coli ED1a] gi|218703437|ref|YP_002410956.1| ribonuclease HII [Escherichia coli UMN026] gi|293403252|ref|ZP_06647349.1| rnhB [Escherichia coli FVEC1412] gi|298378788|ref|ZP_06988672.1| ribonuclease HII [Escherichia coli FVEC1302] gi|300900779|ref|ZP_07118923.1| ribonuclease HII [Escherichia coli MS 198-1] gi|300938590|ref|ZP_07153323.1| ribonuclease HII [Escherichia coli MS 21-1] gi|300984943|ref|ZP_07177208.1| ribonuclease HII [Escherichia coli MS 200-1] gi|306815218|ref|ZP_07449367.1| ribonuclease HII [Escherichia coli NC101] gi|312966320|ref|ZP_07780546.1| ribonuclease HII family protein [Escherichia coli 2362-75] gi|331645326|ref|ZP_08346437.1| ribonuclease HII [Escherichia coli M605] gi|331661254|ref|ZP_08362186.1| ribonuclease HII [Escherichia coli TA206] gi|331681568|ref|ZP_08382205.1| ribonuclease HII [Escherichia coli H299] gi|123049490|sp|Q0TLF0|RNH2_ECOL5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736820|sp|B7N850|RNH2_ECOLU RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736821|sp|B1LGY5|RNH2_ECOSM RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807974|sp|B7UJ84|RNH2_ECO27 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807976|sp|B7MP43|RNH2_ECO81 RecName: Full=Ribonuclease HII; Short=RNase HII gi|110341994|gb|ABG68231.1| ribonuclease HII [Escherichia coli 536] gi|170518603|gb|ACB16781.1| ribonuclease HII [Escherichia coli SMS-3-5] gi|190906960|gb|EDV66562.1| ribonuclease HII [Escherichia coli F11] gi|215263416|emb|CAS07736.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli O127:H6 str. E2348/69] gi|218425622|emb|CAR06408.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli ED1a] gi|218430534|emb|CAR11400.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli UMN026] gi|222032013|emb|CAP74752.1| ribonuclease HII [Escherichia coli LF82] gi|281177408|dbj|BAI53738.1| ribonuclease HII [Escherichia coli SE15] gi|284919958|emb|CBG33013.1| ribonuclease HII [Escherichia coli 042] gi|291430167|gb|EFF03181.1| rnhB [Escherichia coli FVEC1412] gi|298281122|gb|EFI22623.1| ribonuclease HII [Escherichia coli FVEC1302] gi|300306593|gb|EFJ61113.1| ribonuclease HII [Escherichia coli MS 200-1] gi|300355728|gb|EFJ71598.1| ribonuclease HII [Escherichia coli MS 198-1] gi|300456472|gb|EFK19965.1| ribonuclease HII [Escherichia coli MS 21-1] gi|305850880|gb|EFM51335.1| ribonuclease HII [Escherichia coli NC101] gi|309700391|emb|CBI99679.1| ribonuclease HII [Escherichia coli ETEC H10407] gi|312289563|gb|EFR17457.1| ribonuclease HII family protein [Escherichia coli 2362-75] gi|312944791|gb|ADR25618.1| ribonuclease HII [Escherichia coli O83:H1 str. NRG 857C] gi|320196940|gb|EFW71561.1| Ribonuclease HII [Escherichia coli WV_060327] gi|323190417|gb|EFZ75692.1| ribonuclease HII family protein [Escherichia coli RN587/1] gi|324008245|gb|EGB77464.1| ribonuclease HII [Escherichia coli MS 57-2] gi|324014099|gb|EGB83318.1| ribonuclease HII [Escherichia coli MS 60-1] gi|330910033|gb|EGH38543.1| ribonuclease H2 [Escherichia coli AA86] gi|331046083|gb|EGI18202.1| ribonuclease HII [Escherichia coli M605] gi|331052296|gb|EGI24335.1| ribonuclease HII [Escherichia coli TA206] gi|331081789|gb|EGI52950.1| ribonuclease HII [Escherichia coli H299] Length = 198 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 108/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|309796360|ref|ZP_07690769.1| ribonuclease HII [Escherichia coli MS 145-7] gi|308120064|gb|EFO57326.1| ribonuclease HII [Escherichia coli MS 145-7] Length = 198 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 109/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ A AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAELHIAPEYVLIDGNRCPKLPM-PAMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|311280848|ref|YP_003943079.1| Ribonuclease H [Enterobacter cloacae SCF1] gi|308750043|gb|ADO49795.1| Ribonuclease H [Enterobacter cloacae SCF1] Length = 198 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALCWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLHITPEYVLIDGNRCPALP-VPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E GP+ HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAELDVTFPQYGFAQHKGYPTAFHLEKLAEHGPTEQHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|238754793|ref|ZP_04616144.1| Ribonuclease HII [Yersinia ruckeri ATCC 29473] gi|238706953|gb|EEP99319.1| Ribonuclease HII [Yersinia ruckeri ATCC 29473] Length = 187 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 108/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S+ Sbjct: 1 MIAGVDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIEKALSWSL 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P + AV+KGDS Sbjct: 61 GRAEPAEIDELNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPALPM-PSLAVVKGDSRV 119 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +P YGF H GYPTA H + + G + HR +F P Sbjct: 120 AEISAASIVAKVTRDREMAELDSYFPGYGFAQHKGYPTALHLERLAALGATEHHRRSFSP 179 Query: 204 LRN 206 ++N Sbjct: 180 VKN 182 >gi|167747194|ref|ZP_02419321.1| hypothetical protein ANACAC_01908 [Anaerostipes caccae DSM 14662] gi|167654154|gb|EDR98283.1| hypothetical protein ANACAC_01908 [Anaerostipes caccae DSM 14662] Length = 225 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 89/196 (45%), Positives = 113/196 (57%), Gaps = 6/196 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + GIDEVGRG AGPVV AA+IL + +NDSKK+S KKRE L Sbjct: 33 FSYEREYER--YSHICGIDEVGRGPFAGPVVAAAVILPRDCDILYLNDSKKVSPKKREAL 90 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A + I AS + ID+ NI AT +A+ AV NL V P L D +IP Sbjct: 91 YDEIYEKALAVGIGMASEKVIDEINILNATYEAMRTAVSNLPVKPDLLLNDAVTIPGIGT 150 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGD+ S SIAAASI+AKVTRDR+M + YP Y F + GY T H + IKE Sbjct: 151 -EQVPIIKGDAKSASIAAASIVAKVTRDRMMEEYDQLYPQYQFAKNKGYGTKAHIEAIKE 209 Query: 191 KGPSCIHRLTFRPLRN 206 G +HR +F +R Sbjct: 210 YGICTLHRKSF--VRK 223 >gi|88607606|ref|YP_505581.1| ribonuclease HII [Anaplasma phagocytophilum HZ] gi|123494580|sp|Q2GJ70|RNH2_ANAPZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|88598669|gb|ABD44139.1| ribonuclease HII [Anaplasma phagocytophilum HZ] Length = 210 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 76/199 (38%), Positives = 116/199 (58%), Gaps = 2/199 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKK 67 P+F E + V G+DEVG G++AGPVV AA+ + N I DSK ++ KK Sbjct: 2 PNFSYEDSFSHGSNAIVVGVDEVGYGSIAGPVVAAAVYIPDRNVECIPNIKDSKLLTPKK 61 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 R+ LY+++ S + AS I++HNI A+ A+ A+ENL + ++ S Sbjct: 62 RDALYKELLSHTVCGTGLASIDEIEEHNILVASHMAMRRALENLNLQRIDLVLVDGSREL 121 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + ++I GD +S+SIAAASI+AKVTRD +MR H +YP+Y ++ + GY TA H Sbjct: 122 KSQWPSKSIINGDELSISIAAASIVAKVTRDNMMRELHDQYPEYHWNKNCGYGTAAHILA 181 Query: 188 IKEKGPSCIHRLTFRPLRN 206 +K+ G + +HR TF P++ Sbjct: 182 LKQHGATPLHRKTFAPVKK 200 >gi|22126997|ref|NP_670420.1| ribonuclease HII [Yersinia pestis KIM 10] gi|45442560|ref|NP_994099.1| ribonuclease HII [Yersinia pestis biovar Microtus str. 91001] gi|51597304|ref|YP_071495.1| ribonuclease HII [Yersinia pseudotuberculosis IP 32953] gi|108806531|ref|YP_650447.1| ribonuclease HII [Yersinia pestis Antiqua] gi|108813102|ref|YP_648869.1| ribonuclease HII [Yersinia pestis Nepal516] gi|145598936|ref|YP_001163012.1| ribonuclease HII [Yersinia pestis Pestoides F] gi|149366941|ref|ZP_01888974.1| ribonuclease HII [Yersinia pestis CA88-4125] gi|153946846|ref|YP_001400011.1| ribonuclease HII [Yersinia pseudotuberculosis IP 31758] gi|162421227|ref|YP_001607758.1| ribonuclease HII [Yersinia pestis Angola] gi|165927101|ref|ZP_02222933.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. F1991016] gi|165939835|ref|ZP_02228375.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. IP275] gi|166011925|ref|ZP_02232823.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. E1979001] gi|166211521|ref|ZP_02237556.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. B42003004] gi|167400133|ref|ZP_02305651.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419475|ref|ZP_02311228.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425410|ref|ZP_02317163.1| ribonuclease HII [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470459|ref|ZP_02335163.1| ribonuclease HII [Yersinia pestis FV-1] gi|186896409|ref|YP_001873521.1| ribonuclease HII [Yersinia pseudotuberculosis PB1/+] gi|218928226|ref|YP_002346101.1| ribonuclease HII [Yersinia pestis CO92] gi|229837765|ref|ZP_04457925.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis Pestoides A] gi|229840987|ref|ZP_04461146.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843088|ref|ZP_04463238.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis biovar Orientalis str. India 195] gi|229903545|ref|ZP_04518658.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis Nepal516] gi|270487326|ref|ZP_06204400.1| ribonuclease HII [Yersinia pestis KIM D27] gi|294503075|ref|YP_003567137.1| ribonuclease HII [Yersinia pestis Z176003] gi|29427900|sp|Q8ZH54|RNH2_YERPE RecName: Full=Ribonuclease HII; Short=RNase HII gi|73917839|sp|Q667K3|RNH2_YERPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|122980006|sp|Q1CFG1|RNH2_YERPN RecName: Full=Ribonuclease HII; Short=RNase HII gi|123245970|sp|Q1CAM0|RNH2_YERPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226669|sp|A4TL77|RNH2_YERPP RecName: Full=Ribonuclease HII; Short=RNase HII gi|166991071|sp|A7FFI3|RNH2_YERP3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238687277|sp|A9R382|RNH2_YERPG RecName: Full=Ribonuclease HII; Short=RNase HII gi|238691336|sp|B2JZ20|RNH2_YERPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|21960043|gb|AAM86671.1|AE013913_1 RNAse HII [Yersinia pestis KIM 10] gi|45437425|gb|AAS62976.1| ribonuclease HII [Yersinia pestis biovar Microtus str. 91001] gi|51590586|emb|CAH22227.1| ribonuclease HII [Yersinia pseudotuberculosis IP 32953] gi|108776750|gb|ABG19269.1| RNase HII [Yersinia pestis Nepal516] gi|108778444|gb|ABG12502.1| RNase HII [Yersinia pestis Antiqua] gi|115346837|emb|CAL19723.1| ribonuclease HII [Yersinia pestis CO92] gi|145210632|gb|ABP40039.1| RNase HII [Yersinia pestis Pestoides F] gi|149290555|gb|EDM40631.1| ribonuclease HII [Yersinia pestis CA88-4125] gi|152958341|gb|ABS45802.1| ribonuclease HII [Yersinia pseudotuberculosis IP 31758] gi|162354042|gb|ABX87990.1| ribonuclease HII [Yersinia pestis Angola] gi|165912238|gb|EDR30875.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. IP275] gi|165920997|gb|EDR38221.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. F1991016] gi|165989191|gb|EDR41492.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. E1979001] gi|166207292|gb|EDR51772.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. B42003004] gi|166962216|gb|EDR58237.1| ribonuclease HII [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050841|gb|EDR62249.1| ribonuclease HII [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055810|gb|EDR65594.1| ribonuclease HII [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699435|gb|ACC90064.1| ribonuclease HII/HIII [Yersinia pseudotuberculosis PB1/+] gi|229679315|gb|EEO75418.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis Nepal516] gi|229689964|gb|EEO82023.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis biovar Orientalis str. India 195] gi|229697353|gb|EEO87400.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704142|gb|EEO91154.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Yersinia pestis Pestoides A] gi|262361113|gb|ACY57834.1| ribonuclease HII [Yersinia pestis D106004] gi|262365353|gb|ACY61910.1| ribonuclease HII [Yersinia pestis D182038] gi|270335830|gb|EFA46607.1| ribonuclease HII [Yersinia pestis KIM D27] gi|294353534|gb|ADE63875.1| ribonuclease HII [Yersinia pestis Z176003] gi|320014192|gb|ADV97763.1| ribonuclease HII [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 198 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDPN G+ DSKK+S K+R LY++IT A S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L ++P LIDG P+ + AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHATMLAMQRAVSGLHIVPDYVLIDGNRCPKLQM-PSLAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +P+YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMTELDLLFPEYGFAQHKGYPTAFHLEKLAALGATVHHRRSFGP 190 Query: 204 LRN 206 ++ Sbjct: 191 VKR 193 >gi|331091010|ref|ZP_08339852.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405232|gb|EGG84768.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium 2_1_46FAA] Length = 252 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 121/195 (62%), Gaps = 6/195 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + GIDEVGRG LAGPVV A+IL + + +NDSKK+S KKREELY Sbjct: 61 RYEQE--NCMEEYICGIDEVGRGPLAGPVVAGAVILPKDEMILYLNDSKKLSEKKREELY 118 Query: 73 EKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ + I S ID+ NI +AT +A+ A++NL+V P L D +IP + Sbjct: 119 DIIMERAVAAGIGIVSPARIDEINILQATYEAMRMAIDNLKVQPTLLLNDAVTIPS-VNI 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAASIIAKVTRDRLM+ K P Y F S+ GY +A H Q +KE Sbjct: 178 RQIPIIKGDAKSVSIAAASIIAKVTRDRLMKEYDKVIPGYDFASNKGYGSAAHIQALKEN 237 Query: 192 GPSCIHRLTFRPLRN 206 G + IHR TF ++N Sbjct: 238 GATLIHRKTF--IKN 250 >gi|192358895|ref|YP_001981622.1| ribonuclease HII [Cellvibrio japonicus Ueda107] gi|190685060|gb|ACE82738.1| ribonuclease HII [Cellvibrio japonicus Ueda107] Length = 204 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 118/182 (64%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG DEVGRG LAG VV AA+ILDP G++DSKK++ KKRE+L+++I + A I Sbjct: 15 LLAGCDEVGRGPLAGDVVAAAVILDPGQSIIGLDDSKKLTEKKREQLFDEIRAKALSWCI 74 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + AS + ID+ NI +A+L A+ AV+ L + P L+DG +P+ A AV+KGDS Sbjct: 75 ARASVEEIDRLNILQASLLAMTRAVQGLAIQPEHVLVDGNKLPK-WHYSAEAVVKGDSRV 133 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR M YP YGF H GYPT H ++ G S IHR ++ P Sbjct: 134 AAISAASILAKVTRDREMVEMDSYYPGYGFAGHKGYPTKVHLDALERLGVSPIHRSSYAP 193 Query: 204 LR 205 ++ Sbjct: 194 VK 195 >gi|302389636|ref|YP_003825457.1| RNase HII [Thermosediminibacter oceani DSM 16646] gi|302200264|gb|ADL07834.1| RNase HII [Thermosediminibacter oceani DSM 16646] Length = 237 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 88/192 (45%), Positives = 118/192 (61%), Gaps = 2/192 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E ++ E+ +AG+DE GRG LAGPVV AA+IL + +NDSK +S K+RE + Sbjct: 38 FARERLLSERGYRYIAGVDEAGRGPLAGPVVAAAVILPLDVFILKLNDSKLLSEKQREAV 97 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE+I A+ ++ S +YID+HNI ATL A+ AV+ L V P L+D L Sbjct: 98 YEEIKQKAVAVNFSVVDEKYIDEHNILNATLHAMQKAVQGLSVKPDIVLVDALK-IPGLD 156 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q +I GD + SIAAASIIAKV RDR+M+ H+ YP Y F ++ GY T KH + IK+ Sbjct: 157 VQQENIIHGDRLCASIAAASIIAKVERDRIMKNYHELYPHYDFCNNKGYCTKKHVESIKK 216 Query: 191 KGPSCIHRLTFR 202 G S IHR +F Sbjct: 217 YGLSPIHRRSFS 228 >gi|224025200|ref|ZP_03643566.1| hypothetical protein BACCOPRO_01934 [Bacteroides coprophilus DSM 18228] gi|224018436|gb|EEF76434.1| hypothetical protein BACCOPRO_01934 [Bacteroides coprophilus DSM 18228] Length = 200 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSKK++ K+R L E I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPHDFRNELLNDSKKLTEKQRYALREVIEREALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ A++ L++ P+ LIDG + ++KGD LS Sbjct: 73 VTPEEIDRINILNASFLAMHRAIDQLKIRPQHLLIDGNRFNKYADIPHTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y + S+ GYPT KH++ IK+ G + HR++F Sbjct: 133 IAAASILAKTYRDDYMNRLAEEYPAYDWKSNKGYPTVKHREAIKKWGVTPYHRMSF 188 >gi|329118448|ref|ZP_08247154.1| ribonuclease HII [Neisseria bacilliformis ATCC BAA-1200] gi|327465494|gb|EGF11773.1| ribonuclease HII [Neisseria bacilliformis ATCC BAA-1200] Length = 198 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 109/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAG V AA+IL + G+ DSKK+S KKR+ L +I + A+ S++ Sbjct: 7 AGVDEAGRGPLAGSVFAAAVILPEHYDLPGLADSKKLSEKKRDALAAQIKAQAVAWSVAE 66 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI A + A+ AVENL V P+ LIDG IP+ LP A A++KGD+ + Sbjct: 67 AGVDEIARLNILHAAMLAMRRAVENLAVPPQRILIDGNRIPDGLPAPAEAIVKGDAKIPA 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M ++P YGF+ H GY T +H ++ G HR F P+R Sbjct: 127 ISAASILAKTARDAQMYALAARHPQYGFERHKGYGTPEHLAALRRHGALPEHRRGFAPVR 186 Query: 206 NLS 208 + Sbjct: 187 EIL 189 >gi|157376279|ref|YP_001474879.1| ribonuclease H [Shewanella sediminis HAW-EB3] gi|189043661|sp|A8FY28|RNH2_SHESH RecName: Full=Ribonuclease HII; Short=RNase HII gi|157318653|gb|ABV37751.1| Ribonuclease H [Shewanella sediminis HAW-EB3] Length = 213 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 87/187 (46%), Positives = 114/187 (60%), Gaps = 8/187 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DEVGRG L G VV AA+ILDP G+NDSKK+S KKRE L+ +I A ISI Sbjct: 21 AGVDEVGRGPLVGNVVTAAVILDPTKPITGLNDSKKLSEKKREALFTEIHEKALAISIGY 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-------DLPCQAFAVIK 138 AS + ID+ NI AT+ A+ AV L + P S L+DG P+ D ++ A+IK Sbjct: 81 ASPEEIDELNILHATMLAMQRAVAGLDMAPTSVLVDGNRTPDFSHGEDTDRNIESHAIIK 140 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + I+AASI+AKV RDR M + ++P YGF H GYPT H + + G HR Sbjct: 141 GDGLVAGISAASIVAKVIRDREMDLLDMEHPQYGFAKHKGYPTKAHFEALALHGVLPEHR 200 Query: 199 LTFRPLR 205 +FRP++ Sbjct: 201 KSFRPVK 207 >gi|228471979|ref|ZP_04056747.1| ribonuclease HII [Capnocytophaga gingivalis ATCC 33624] gi|228276591|gb|EEK15304.1| ribonuclease HII [Capnocytophaga gingivalis ATCC 33624] Length = 197 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 101/179 (56%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPV AA+IL + +NDSK+++ K+R L I A ++ Sbjct: 11 AGTDEAGRGCLAGPVTAAAVILPEDFYHPLLNDSKQMTEKQRNLLRPIIEEQALSYAVVH 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI A+++A++ A++ L + P ++DG +KGD + Sbjct: 71 LSPERIDQINILNASIEAMHQALDKLTLTPEFVVVDGNRFKPYKEIPYSCQVKGDGRFMR 130 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAAS++AK RD M HK+YP Y +D + GYPT +H++ I E G HR TF+ + Sbjct: 131 IAAASVLAKTYRDAYMETLHKQYPMYHWDKNKGYPTREHREAILEYGACEHHRKTFQLI 189 >gi|225572008|ref|ZP_03780872.1| hypothetical protein RUMHYD_00302 [Blautia hydrogenotrophica DSM 10507] gi|225040541|gb|EEG50787.1| hypothetical protein RUMHYD_00302 [Blautia hydrogenotrophica DSM 10507] Length = 251 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 87/191 (45%), Positives = 116/191 (60%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F E + GIDE GRG LAGPVV A+IL N +NDSKK+S +REEL Sbjct: 59 FAYEREYEHLGY--ICGIDEAGRGPLAGPVVAGAVILQKNCGILYLNDSKKLSAARREEL 116 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I A+ + + AS Q ID+ NI +AT +A+ A++ L++ P+ L D + + Sbjct: 117 YRQIVEEAVAVGVGYASPQRIDEINILQATYEAMREAIQKLKIKPQILLNDAVT-IPGVS 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C +IKGD+ S SIAAASI+AKVTRDRLM + P+YGF SH GY A H + +K+ Sbjct: 176 CPQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDRLMPEYGFASHKGYGAAAHIEALKK 235 Query: 191 KGPSCIHRLTF 201 GPS IHR +F Sbjct: 236 YGPSPIHRKSF 246 >gi|260752544|ref|YP_003225437.1| ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551907|gb|ACV74853.1| Ribonuclease H [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 215 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 78/200 (39%), Positives = 117/200 (58%), Gaps = 7/200 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E ++ V G+DEVGRG LAGPV+ A+ L +IP GINDSKK++ ++R Sbjct: 14 PDLSYEDRIK----GVVFGVDEVGRGPLAGPVMAGAVYLHREHIPEGINDSKKLTARRRH 69 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAV---ENLQVIPRSALIDGRSIP 126 L + + + A + A+ ID+ NI +A+L A+ AV ++ Sbjct: 70 LLSDMLHNQADYATGMANVHEIDRINIRQASLLAMKRAVEALIQKIGREPDCILVDGRDI 129 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D P + +IKGDS+SLSIAAASI+AKV RD +M A ++YP YG++ ++GYPT +H++ Sbjct: 130 PDWPWLSLPIIKGDSLSLSIAAASIVAKVERDEIMVKASQEYPGYGWEHNMGYPTKEHRE 189 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 I+ P+ HR +F P+R Sbjct: 190 AIQRLKPTKFHRRSFSPIRQ 209 >gi|113461500|ref|YP_719569.1| ribonuclease HII [Haemophilus somnus 129PT] gi|122945377|sp|Q0I4M6|RNH2_HAES1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|112823543|gb|ABI25632.1| RNase HII [Haemophilus somnus 129PT] Length = 211 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 88/194 (45%), Positives = 117/194 (60%), Gaps = 2/194 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 N+ +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I Sbjct: 3 NAFVYPNVEFIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLKDSKKLSEKKRLLLAEEI 62 Query: 76 TSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A S+ A IDK NI AT+ A+ AVENL++ P L+DG IP+ A Sbjct: 63 KQKALAWSLGRAEPAEIDKLNILHATMLAMQRAVENLKIQPHFVLVDGNRIPQLPM-SAQ 121 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 AVIKGDS+ I+AASI+AKV RD+ M ++YP+Y F H GYPT H + + + G Sbjct: 122 AVIKGDSLVAEISAASILAKVARDQEMIELDRRYPEYAFAQHKGYPTKLHLERLAQFGVL 181 Query: 195 CIHRLTFRPLRNLS 208 +R +F P++ L Sbjct: 182 PEYRRSFAPVKKLL 195 >gi|332530821|ref|ZP_08406747.1| ribonuclease HII [Hylemonella gracilis ATCC 19624] gi|332039733|gb|EGI76133.1| ribonuclease HII [Hylemonella gracilis ATCC 19624] Length = 196 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 78/182 (42%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DE GRG LAGPVV AA+ILD N G++DSKK++ +RE LY++I + A + Sbjct: 6 GLLAGVDEAGRGPLAGPVVAAAVILDELNPIEGLDDSKKLTAARRERLYDEIRAKALCCA 65 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ AS + ID NI +ATL A+ AV L++ P L+DG +P + AV++GD++ Sbjct: 66 VAEASVEEIDALNILQATLLAMRRAVGGLRLKPSKVLVDGNQLPRLSVL-SEAVVRGDAL 124 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR +++P YGF +H GY TA H + G HR +F Sbjct: 125 VPAISAASILAKVHRDRWCLSYDREFPQYGFAAHKGYGTAVHLAALHMHGACPQHRRSFA 184 Query: 203 PL 204 P+ Sbjct: 185 PV 186 >gi|332981643|ref|YP_004463084.1| Ribonuclease H [Mahella australiensis 50-1 BON] gi|332699321|gb|AEE96262.1| Ribonuclease H [Mahella australiensis 50-1 BON] Length = 191 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 82/178 (46%), Positives = 112/178 (62%), Gaps = 2/178 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG LAGPV+ AA+IL G+ DSKK++ K+R+ L++ I A ++I Sbjct: 5 YVAGVDEVGRGPLAGPVMAAAVILPAGLHIDGLRDSKKLTPKQRQYLHDIILDKALAVAI 64 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +S H+ ID+ NI A L+ + AV +L + P ++DGR D+ AVI GD + Sbjct: 65 ASVDHERIDEINIRMAALEVMKQAVLSLSIQPDRVMVDGRD-TLDITIPQQAVIGGDDLV 123 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+AAS++AKVTRDRLM H KYP Y F + GY T KH + I+E G IHR+TF Sbjct: 124 ACISAASVVAKVTRDRLMVQYHDKYPQYDFIHNKGYGTQKHIEAIREYGICPIHRITF 181 >gi|170023329|ref|YP_001719834.1| ribonuclease HII [Yersinia pseudotuberculosis YPIII] gi|238688489|sp|B1JQH4|RNH2_YERPY RecName: Full=Ribonuclease HII; Short=RNase HII gi|169749863|gb|ACA67381.1| Ribonuclease H [Yersinia pseudotuberculosis YPIII] Length = 198 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDPN G+ DSKK+S K+R LY++IT A S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI A + A+ AV L ++P LIDG P+ + AV+KGDS Sbjct: 72 GRAEPEEIDQLNILHAAMLAMQRAVSGLHIVPDYVLIDGNRCPKLQM-PSLAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M +P+YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMTELDLLFPEYGFAQHKGYPTAFHLEKLAALGATVHHRRSFGP 190 Query: 204 LRN 206 ++ Sbjct: 191 VKR 193 >gi|83319843|ref|YP_424513.1| ribonuclease HII, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|97182957|sp|Q2SRV0|RNH2_MYCCT RecName: Full=Ribonuclease HII; Short=RNase HII gi|83283729|gb|ABC01661.1| ribonuclease HII, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 207 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 75/191 (39%), Positives = 116/191 (60%), Gaps = 1/191 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + N+ ++G DE GRG LAGP+VVA++IL P+ I DSKK++ K R+ L+++I + Sbjct: 13 LDHNITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNPKTRQVLFDEIIKN 72 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 I S + +D+ N +A+L + NL++ P ALIDG + ++I Sbjct: 73 CLDYQIMIISSKQVDELNPLQASLLGFKTTISNLKITPDLALIDGNQNINLENIKTLSII 132 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD S SIA +SI+AKVTRD+++ + YP+YGF SH GY T KH I++ G IH Sbjct: 133 KGDDNSFSIACSSILAKVTRDKILDQYDQIYPNYGFKSHKGYCTKKHLLAIQKYGVLDIH 192 Query: 198 RLTFRPLRNLS 208 R +++P++ +S Sbjct: 193 RKSYKPIKKIS 203 >gi|16128176|ref|NP_414725.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. MG1655] gi|74310803|ref|YP_309222.1| ribonuclease HII [Shigella sonnei Ss046] gi|89107063|ref|AP_000843.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. W3110] gi|157157454|ref|YP_001461352.1| ribonuclease HII [Escherichia coli E24377A] gi|157159648|ref|YP_001456966.1| ribonuclease HII [Escherichia coli HS] gi|170079819|ref|YP_001729139.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. DH10B] gi|188492814|ref|ZP_03000084.1| ribonuclease HII [Escherichia coli 53638] gi|191167029|ref|ZP_03028851.1| ribonuclease HII [Escherichia coli B7A] gi|193063198|ref|ZP_03044289.1| ribonuclease HII [Escherichia coli E22] gi|193067763|ref|ZP_03048730.1| ribonuclease HII [Escherichia coli E110019] gi|194428257|ref|ZP_03060799.1| ribonuclease HII [Escherichia coli B171] gi|209917373|ref|YP_002291457.1| ribonuclease HII [Escherichia coli SE11] gi|218552764|ref|YP_002385677.1| ribonuclease HII [Escherichia coli IAI1] gi|218693648|ref|YP_002401315.1| ribonuclease HII [Escherichia coli 55989] gi|238899581|ref|YP_002925377.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli BW2952] gi|254037602|ref|ZP_04871679.1| ribonuclease HII [Escherichia sp. 1_1_43] gi|256021615|ref|ZP_05435480.1| ribonuclease HII [Shigella sp. D9] gi|256025495|ref|ZP_05439360.1| ribonuclease HII [Escherichia sp. 4_1_40B] gi|260842415|ref|YP_003220193.1| ribonuclease HII [Escherichia coli O103:H2 str. 12009] gi|260853393|ref|YP_003227284.1| ribonuclease HII [Escherichia coli O26:H11 str. 11368] gi|260866332|ref|YP_003232734.1| ribonuclease HII [Escherichia coli O111:H- str. 11128] gi|293476840|ref|ZP_06665248.1| ribonuclease HII [Escherichia coli B088] gi|300816223|ref|ZP_07096446.1| ribonuclease HII [Escherichia coli MS 107-1] gi|300824094|ref|ZP_07104214.1| ribonuclease HII [Escherichia coli MS 119-7] gi|300923025|ref|ZP_07139092.1| ribonuclease HII [Escherichia coli MS 182-1] gi|300949785|ref|ZP_07163759.1| ribonuclease HII [Escherichia coli MS 116-1] gi|300956066|ref|ZP_07168391.1| ribonuclease HII [Escherichia coli MS 175-1] gi|301028676|ref|ZP_07191897.1| ribonuclease HII [Escherichia coli MS 196-1] gi|301330019|ref|ZP_07222703.1| ribonuclease HII [Escherichia coli MS 78-1] gi|301646506|ref|ZP_07246381.1| ribonuclease HII [Escherichia coli MS 146-1] gi|307136783|ref|ZP_07496139.1| ribonuclease HII [Escherichia coli H736] gi|307311369|ref|ZP_07591011.1| Ribonuclease H [Escherichia coli W] gi|331640637|ref|ZP_08341785.1| ribonuclease HII [Escherichia coli H736] gi|331666424|ref|ZP_08367305.1| ribonuclease HII [Escherichia coli TA271] gi|331680762|ref|ZP_08381421.1| ribonuclease HII [Escherichia coli H591] gi|332282857|ref|ZP_08395270.1| ribonuclease HII degrades RNA of DNA-RNA hybrids [Shigella sp. D9] gi|2507334|sp|P10442|RNH2_ECOLI RecName: Full=Ribonuclease HII; Short=RNase HII gi|97189278|sp|Q3Z5H5|RNH2_SHISS RecName: Full=Ribonuclease HII; Short=RNase HII gi|166991065|sp|A7ZHS3|RNH2_ECO24 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166991066|sp|A7ZWC9|RNH2_ECOHS RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736819|sp|B7M1Y6|RNH2_ECO8A RecName: Full=Ribonuclease HII; Short=RNase HII gi|229564284|sp|B1XD52|RNH2_ECODH RecName: Full=Ribonuclease HII; Short=RNase HII gi|238056777|sp|B6HZF7|RNH2_ECOSE RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807975|sp|B7LGP5|RNH2_ECO55 RecName: Full=Ribonuclease HII; Short=RNase HII gi|259494063|sp|C4ZRS5|RNH2_ECOBW RecName: Full=Ribonuclease HII; Short=RNase HII gi|1552760|gb|AAB08612.1| ribonuclease HII [Escherichia coli] gi|1786380|gb|AAC73294.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. MG1655] gi|73854280|gb|AAZ86987.1| RNAse HII [Shigella sonnei Ss046] gi|85674372|dbj|BAA77858.2| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K12 substr. W3110] gi|157065328|gb|ABV04583.1| ribonuclease HII [Escherichia coli HS] gi|157079484|gb|ABV19192.1| ribonuclease HII [Escherichia coli E24377A] gi|169887654|gb|ACB01361.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli str. K-12 substr. DH10B] gi|188488013|gb|EDU63116.1| ribonuclease HII [Escherichia coli 53638] gi|190902922|gb|EDV62649.1| ribonuclease HII [Escherichia coli B7A] gi|192931106|gb|EDV83709.1| ribonuclease HII [Escherichia coli E22] gi|192959175|gb|EDV89611.1| ribonuclease HII [Escherichia coli E110019] gi|194413632|gb|EDX29912.1| ribonuclease HII [Escherichia coli B171] gi|209910632|dbj|BAG75706.1| ribonuclease HII [Escherichia coli SE11] gi|218350380|emb|CAU96063.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli 55989] gi|218359532|emb|CAQ97070.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli IAI1] gi|226840708|gb|EEH72710.1| ribonuclease HII [Escherichia sp. 1_1_43] gi|238863470|gb|ACR65468.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli BW2952] gi|257752042|dbj|BAI23544.1| ribonuclease HII [Escherichia coli O26:H11 str. 11368] gi|257757562|dbj|BAI29059.1| ribonuclease HII [Escherichia coli O103:H2 str. 12009] gi|257762688|dbj|BAI34183.1| ribonuclease HII [Escherichia coli O111:H- str. 11128] gi|260450614|gb|ACX41036.1| Ribonuclease H [Escherichia coli DH1] gi|291321293|gb|EFE60735.1| ribonuclease HII [Escherichia coli B088] gi|299878308|gb|EFI86519.1| ribonuclease HII [Escherichia coli MS 196-1] gi|300317096|gb|EFJ66880.1| ribonuclease HII [Escherichia coli MS 175-1] gi|300420652|gb|EFK03963.1| ribonuclease HII [Escherichia coli MS 182-1] gi|300450817|gb|EFK14437.1| ribonuclease HII [Escherichia coli MS 116-1] gi|300523371|gb|EFK44440.1| ribonuclease HII [Escherichia coli MS 119-7] gi|300531430|gb|EFK52492.1| ribonuclease HII [Escherichia coli MS 107-1] gi|300843930|gb|EFK71690.1| ribonuclease HII [Escherichia coli MS 78-1] gi|301075292|gb|EFK90098.1| ribonuclease HII [Escherichia coli MS 146-1] gi|306908348|gb|EFN38846.1| Ribonuclease H [Escherichia coli W] gi|315059401|gb|ADT73728.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli W] gi|315134873|dbj|BAJ42032.1| ribonuclease HII [Escherichia coli DH1] gi|315616332|gb|EFU96950.1| ribonuclease HII family protein [Escherichia coli 3431] gi|320200291|gb|EFW74877.1| Ribonuclease HII [Escherichia coli EC4100B] gi|323157980|gb|EFZ44082.1| ribonuclease HII family protein [Escherichia coli EPECa14] gi|323160197|gb|EFZ46156.1| ribonuclease HII family protein [Escherichia coli E128010] gi|323165884|gb|EFZ51666.1| ribonuclease HII family protein [Shigella sonnei 53G] gi|323170975|gb|EFZ56624.1| ribonuclease HII family protein [Escherichia coli LT-68] gi|323176498|gb|EFZ62090.1| ribonuclease HII family protein [Escherichia coli 1180] gi|323181691|gb|EFZ67105.1| ribonuclease HII family protein [Escherichia coli 1357] gi|323380040|gb|ADX52308.1| Ribonuclease H [Escherichia coli KO11] gi|323939941|gb|EGB36139.1| ribonuclease HII [Escherichia coli E482] gi|323945660|gb|EGB41709.1| ribonuclease HII [Escherichia coli H120] gi|323970662|gb|EGB65918.1| ribonuclease HII [Escherichia coli TA007] gi|324017810|gb|EGB87029.1| ribonuclease HII [Escherichia coli MS 117-3] gi|324118303|gb|EGC12198.1| ribonuclease HII [Escherichia coli E1167] gi|331040383|gb|EGI12590.1| ribonuclease HII [Escherichia coli H736] gi|331066635|gb|EGI38512.1| ribonuclease HII [Escherichia coli TA271] gi|331072225|gb|EGI43561.1| ribonuclease HII [Escherichia coli H591] gi|332105209|gb|EGJ08555.1| ribonuclease HII degrades RNA of DNA-RNA hybrids [Shigella sp. D9] gi|332341516|gb|AEE54850.1| ribonuclease HII RnhB [Escherichia coli UMNK88] Length = 198 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 109/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ A AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PAMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|325282798|ref|YP_004255339.1| Ribonuclease H [Deinococcus proteolyticus MRP] gi|324314607|gb|ADY25722.1| Ribonuclease H [Deinococcus proteolyticus MRP] Length = 215 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 3/196 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + LE + + VAG+DE GRGA AGPV VAA+IL DSK ++ ++RE Sbjct: 11 PDWSLERQHWVRGYFRVAGVDEAGRGAWAGPVTVAAVILPNTGAELPFADSKTLTARQRE 70 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L E++ A+ ++ A I++ NI AT A A+ L P++ + D + Sbjct: 71 MLAEEVRRVAVAWAVEYAWPDEIERLNILGATHAAAARALAALDPEPQALVTDYLRLRT- 129 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 P A + D++S S+AAAS++AK RD LM +YP YGF +H GY +H+ + Sbjct: 130 -PLPILAPPRADALSYSVAAASLLAKTERDALMTRLDAQYPGYGFAAHKGYGAPQHRAAL 188 Query: 189 KEKGPSCIHRLTFRPL 204 E G S +HR +FRP+ Sbjct: 189 DELGVSAVHRRSFRPI 204 >gi|24111618|ref|NP_706128.1| ribonuclease HII [Shigella flexneri 2a str. 301] gi|30061740|ref|NP_835911.1| ribonuclease HII [Shigella flexneri 2a str. 2457T] gi|82775573|ref|YP_401920.1| ribonuclease HII [Shigella dysenteriae Sd197] gi|110804235|ref|YP_687755.1| ribonuclease HII [Shigella flexneri 5 str. 8401] gi|309787143|ref|ZP_07681755.1| ribonuclease HII family protein [Shigella dysenteriae 1617] gi|39932374|sp|Q83MN1|RNH2_SHIFL RecName: Full=Ribonuclease HII; Short=RNase HII gi|97189271|sp|Q32JS6|RNH2_SHIDS RecName: Full=Ribonuclease HII; Short=RNase HII gi|123147263|sp|Q0T826|RNH2_SHIF8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|24050387|gb|AAN41835.1| RNAse HII [Shigella flexneri 2a str. 301] gi|30039982|gb|AAP15716.1| RNAse HII [Shigella flexneri 2a str. 2457T] gi|81239721|gb|ABB60431.1| RNAse HII [Shigella dysenteriae Sd197] gi|110613783|gb|ABF02450.1| RNAse HII [Shigella flexneri 5 str. 8401] gi|281599538|gb|ADA72522.1| Ribonuclease HII [Shigella flexneri 2002017] gi|308924721|gb|EFP70216.1| ribonuclease HII family protein [Shigella dysenteriae 1617] gi|313646756|gb|EFS11215.1| ribonuclease HII family protein [Shigella flexneri 2a str. 2457T] gi|332762020|gb|EGJ92291.1| ribonuclease HII family protein [Shigella flexneri 2747-71] gi|332762187|gb|EGJ92456.1| ribonuclease HII family protein [Shigella flexneri 4343-70] gi|332765032|gb|EGJ95260.1| ribonuclease HII family protein [Shigella flexneri K-671] gi|332768686|gb|EGJ98866.1| ribonuclease HII family protein [Shigella flexneri 2930-71] gi|333009387|gb|EGK28843.1| ribonuclease HII family protein [Shigella flexneri K-218] gi|333010678|gb|EGK30111.1| ribonuclease HII family protein [Shigella flexneri VA-6] gi|333022198|gb|EGK41437.1| ribonuclease HII family protein [Shigella flexneri K-304] Length = 198 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 109/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ A AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PAMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|167756891|ref|ZP_02429018.1| hypothetical protein CLORAM_02440 [Clostridium ramosum DSM 1402] gi|167703066|gb|EDS17645.1| hypothetical protein CLORAM_02440 [Clostridium ramosum DSM 1402] Length = 206 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 71/190 (37%), Positives = 107/190 (56%), Gaps = 4/190 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 + + G+DE GRG +AG +VVA ++ INDSK++S KKRE LY+ I +A Sbjct: 12 QAGYDYIIGLDEAGRGPMAGELVVAGVVFPKGFYDERINDSKQLSAKKREVLYDLIIENA 71 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I S +D+ N+++A+ + +E L+ AL D ++IK Sbjct: 72 LYYDIEIISVADVDRLNVYQASKQGMEKCLELLKKEKMFALTDA---MPIDYPDHLSIIK 128 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S+SIA ASI+AKVTRDRLM +YP+YGF+ H GY T H++ + + G IHR Sbjct: 129 GDAKSISIAGASILAKVTRDRLMEAYALEYPEYGFEKHKGYVTKAHKEALGKYGVCPIHR 188 Query: 199 LTFRPLRNLS 208 +F P++ + Sbjct: 189 KSFGPVQKIL 198 >gi|315302908|ref|ZP_07873644.1| ribonuclease HII [Listeria ivanovii FSL F6-596] gi|313628722|gb|EFR97119.1| ribonuclease HII [Listeria ivanovii FSL F6-596] Length = 261 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 122/194 (62%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ + +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETDLYKRGVKYIAGVDEVGRGPLAGPVVAAAVILPEHFSVIGINDSKQLSEAKRDILF 119 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + IT A + I H ID+ NI++AT A+ A++ L P LID ++P Sbjct: 120 DLITEQALAVGIGIIEHDVIDQVNIYEATKLAMRKALDELNPKPDFVLID--AMPLKYTE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRD+LM+ K YP Y F S++GY T KH + Sbjct: 178 SELSLIKGDTKSISIAAASIIAKVTRDKLMKEYEKTYPGYDFASNMGYGTKKHLYGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHRL+F P++ Sbjct: 238 GICPIHRLSFSPVK 251 >gi|170718385|ref|YP_001783609.1| ribonuclease HII [Haemophilus somnus 2336] gi|189043602|sp|B0UW63|RNH2_HAES2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|168826514|gb|ACA31885.1| Ribonuclease H [Haemophilus somnus 2336] Length = 211 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 88/188 (46%), Positives = 117/188 (62%), Gaps = 2/188 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 N+ +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I A Sbjct: 9 NVEFIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLKDSKKLSEKKRLLLAEEIKQKALA 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S+ A IDK NI AT+ A+ AVENL++ P L+DG IP+ A AVIKGD Sbjct: 69 WSLGRAEPAEIDKLNILHATMLAMQRAVENLKIQPHFVLVDGNRIPQLPM-SAQAVIKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+ I+AASI+AKV RD+ M ++YP+Y F H GYPT H + + + G +R + Sbjct: 128 SLVAEISAASILAKVARDQEMIELDRRYPEYAFAQHKGYPTKLHLERLAQFGVLPEYRRS 187 Query: 201 FRPLRNLS 208 F P++ L Sbjct: 188 FAPVKKLL 195 >gi|160945102|ref|ZP_02092328.1| hypothetical protein FAEPRAM212_02621 [Faecalibacterium prausnitzii M21/2] gi|158442833|gb|EDP19838.1| hypothetical protein FAEPRAM212_02621 [Faecalibacterium prausnitzii M21/2] gi|295105649|emb|CBL03193.1| RNase HII [Faecalibacterium prausnitzii SL3/3] Length = 215 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 86/193 (44%), Positives = 114/193 (59%), Gaps = 2/193 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P + +A VR + AG+DE GRG L GPV VAA ILDP N +GINDSKK++ KKRE Sbjct: 12 PLYAFDAEVRSQ-YGCFAGVDEAGRGPLCGPVCVAACILDPENPVYGINDSKKLTEKKRE 70 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+++I A I + ID+ NI AT+ + AVE L ++P L+DG P Sbjct: 71 ALFDEICEKALAYRIIFVGPEVIDRENILNATMGGMQQAVEELDIVPNLVLVDGNRTPAG 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A V+KGD+ S SI AAS++AKV+RDR M K+YP Y H GYPT H ++I Sbjct: 131 LQIPAQPVVKGDATSASIGAASVLAKVSRDRYMLELDKQYPQYQLAKHKGYPTKLHYELI 190 Query: 189 KEKGPSCIHRLTF 201 + G +R +F Sbjct: 191 AQYGIQPFYRRSF 203 >gi|83647902|ref|YP_436337.1| ribonuclease HII [Hahella chejuensis KCTC 2396] gi|97182857|sp|Q2SBR2|RNH2_HAHCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|83635945|gb|ABC31912.1| Ribonuclease HII [Hahella chejuensis KCTC 2396] Length = 204 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 89/198 (44%), Positives = 122/198 (61%), Gaps = 8/198 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E VAG+DEVGRG LAGPVV AA+IL+P G+NDSKK+SH++R L Sbjct: 11 FDHET------GQLVAGVDEVGRGPLAGPVVAAAVILNPEKPIEGLNDSKKLSHRQRVAL 64 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I A + A+ + ID+ NI +A+L A+ AV LQV P ALIDG IP+ Sbjct: 65 SQEIREKALAWATGWATVEEIDQINILQASLLAMQRAVAGLQVAPDLALIDGNKIPKLDM 124 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A A++KGDS +IAAASI+AKV RD + +P YG H GYPTA+H ++E Sbjct: 125 -PAEAIVKGDSKVAAIAAASILAKVERDEELDRLDVIFPGYGLAGHKGYPTAQHLSALRE 183 Query: 191 KGPSCIHRLTFRPLRNLS 208 G + IHR +++P++ L Sbjct: 184 LGVTDIHRRSYKPVQQLL 201 >gi|315300687|gb|EFU59914.1| ribonuclease HII [Escherichia coli MS 16-3] Length = 198 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 84/184 (45%), Positives = 107/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ + AV+ GDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PSMAVVTGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|270264806|ref|ZP_06193070.1| ribonuclease HII [Serratia odorifera 4Rx13] gi|270041104|gb|EFA14204.1| ribonuclease HII [Serratia odorifera 4Rx13] Length = 197 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S Sbjct: 11 TLIAGVDEVGRGPLVGAVVTAAVILDPARPIIGLADSKKLSEKRRLALYDEIVEKALSWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L + P LIDG P+ ++ AV+KGDS Sbjct: 71 LGRAEPEEIDRLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCPKLPM-RSQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +++PDYGF H GYPTA H + + G + HR +F Sbjct: 130 VAEISAASILAKVTRDREMTELDREFPDYGFAQHKGYPTAFHLERLAVLGATEHHRRSFA 189 Query: 203 PLRN 206 P+R Sbjct: 190 PVRR 193 >gi|154491927|ref|ZP_02031553.1| hypothetical protein PARMER_01557 [Parabacteroides merdae ATCC 43184] gi|154088168|gb|EDN87213.1| hypothetical protein PARMER_01557 [Parabacteroides merdae ATCC 43184] Length = 199 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P+ +NDSK++S KKR L I AI ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDFHNEDLNDSKQLSEKKRYALRPIIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI KA+ A++ A++ L+V P LIDG + V+KGD LS Sbjct: 73 VTPEEIDRINILKASFLAMHRAIDQLKVKPEHLLIDGNRFTPYPGLKHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y + + GYPT H++ I+E G + HR TF Sbjct: 133 IAAASILAKTYRDDYMDSLDREYPAYHWKENKGYPTKAHREAIRECGITPYHRKTF 188 >gi|282879385|ref|ZP_06288128.1| ribonuclease HII [Prevotella buccalis ATCC 35310] gi|281298498|gb|EFA90924.1| ribonuclease HII [Prevotella buccalis ATCC 35310] Length = 203 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 70/176 (39%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL PN +NDSK++S KKR+ L + I + A+ ++ Sbjct: 16 AGCDEAGRGCLAGSVFAAAVILPPNYDNADLNDSKQLSRKKRDALRQAIINDAVAWAVGE 75 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + Q ID+ NI +A+ A++ A++ L P++ ++DG +IKGD Sbjct: 76 VTPQEIDEINILRASFLAMHRALDQLTTRPQAIIVDGNRFTPYHDLPYTTIIKGDGKYQD 135 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y + S++GYPT KH++ I+ G + HR +F Sbjct: 136 IAAASILAKTFRDDYMDRLAQEYPQYDWQSNMGYPTRKHREAIRAYGITPYHRRSF 191 >gi|91209253|ref|YP_539239.1| ribonuclease HII [Escherichia coli UTI89] gi|117622468|ref|YP_851381.1| ribonuclease HII [Escherichia coli APEC O1] gi|218557124|ref|YP_002390037.1| ribonuclease HII [Escherichia coli S88] gi|237704342|ref|ZP_04534823.1| ribonuclease HII [Escherichia sp. 3_2_53FAA] gi|122424950|sp|Q1RG06|RNH2_ECOUT RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225184|sp|A1A7M7|RNH2_ECOK1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|226736817|sp|B7MBG4|RNH2_ECO45 RecName: Full=Ribonuclease HII; Short=RNase HII gi|91070827|gb|ABE05708.1| RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli UTI89] gi|115511592|gb|ABI99666.1| ribonuclease HII [Escherichia coli APEC O1] gi|218363893|emb|CAR01558.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli S88] gi|226902254|gb|EEH88513.1| ribonuclease HII [Escherichia sp. 3_2_53FAA] gi|294490169|gb|ADE88925.1| ribonuclease HII [Escherichia coli IHE3034] gi|307629759|gb|ADN74063.1| ribonuclease HII [Escherichia coli UM146] gi|315285250|gb|EFU44695.1| ribonuclease HII [Escherichia coli MS 110-3] gi|323950818|gb|EGB46695.1| ribonuclease HII [Escherichia coli H252] gi|323955144|gb|EGB50919.1| ribonuclease HII [Escherichia coli H263] Length = 198 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 108/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLVLCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|323135966|ref|ZP_08071049.1| Ribonuclease H [Methylocystis sp. ATCC 49242] gi|322399057|gb|EFY01576.1| Ribonuclease H [Methylocystis sp. ATCC 49242] Length = 204 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 93/198 (46%), Positives = 132/198 (66%), Gaps = 2/198 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F LE +R + +WPVAG+DEVGRG LAGPV AA+ILDP +P G+NDSK + ++RE Sbjct: 6 PDFRLEGRLRRQGVWPVAGVDEVGRGPLAGPVAAAAVILDPARLPLGVNDSKALGPRERE 65 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 +E+I S+A +S++ + ID NI +A+L A+ AV L + P L+DGR P Sbjct: 66 AAFERILSTAQAVSVAFVTPPEIDAMNIRQASLAAMARAVAGLSLAPAFVLVDGRDPPPL 125 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 C A++KGD+++LSIAAASI+AKV RD +MR YPDYGF+++ GY +H + Sbjct: 126 -ACHCRAIVKGDALALSIAAASIVAKVARDGMMRRLAAAYPDYGFETNAGYGARRHLDAL 184 Query: 189 KEKGPSCIHRLTFRPLRN 206 + GP+ +HR +F PLR+ Sbjct: 185 ERIGPTPVHRFSFAPLRD 202 >gi|333011022|gb|EGK30441.1| ribonuclease HII family protein [Shigella flexneri K-272] gi|333021817|gb|EGK41066.1| ribonuclease HII family protein [Shigella flexneri K-227] Length = 198 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 88/185 (47%), Positives = 110/185 (59%), Gaps = 2/185 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 M VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LYE+I A Sbjct: 9 MQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEEIKEKALSW 68 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ A ID+ NI AT+ A+ AV L + P LIDG P+ A AV+KGDS Sbjct: 69 SLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PAMAVVKGDS 127 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 128 RVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSF 187 Query: 202 RPLRN 206 P++ Sbjct: 188 GPVKR 192 >gi|146310385|ref|YP_001175459.1| ribonuclease HII [Enterobacter sp. 638] gi|166991067|sp|A4W6S8|RNH2_ENT38 RecName: Full=Ribonuclease HII; Short=RNase HII gi|145317261|gb|ABP59408.1| Ribonuclease H [Enterobacter sp. 638] Length = 198 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L+++P LIDG P ++ AV+KGDS Sbjct: 71 GRAEPEEIDELNILHATMLAMQRAVAGLKIVPEYVLIDGNRCPALPM-RSLAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRD M YP YGF H GYPTA H + + E GP+ HR +F P Sbjct: 130 AEISAASIIAKVTRDAEMAALDLSYPQYGFAQHKGYPTAFHLEKLSEHGPTEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|187478242|ref|YP_786266.1| ribonuclease HII [Bordetella avium 197N] gi|97182295|sp|Q2L146|RNH2_BORA1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|115422828|emb|CAJ49356.1| ribonuclease HII [Bordetella avium 197N] Length = 202 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 83/185 (44%), Positives = 110/185 (59%), Gaps = 2/185 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 VAG+DE GRG LAG V AA+ILDP G+ DSK + ++RE L E+I + A I+ Sbjct: 17 VAGVDEAGRGPLAGAVYAAAVILDPQRPIDGLADSKVLKAERRERLAEQIKAQALSWCIA 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID NI +ATL A+ AVE L +P AL+DG P C +IKGD++ Sbjct: 77 CASTDEIDSMNILRATLLAMQRAVEGLNQLPSLALVDGNQAPRL-RCAVQTIIKGDALVP 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD ++ H YP YGFD H GY TA H ++E GP HR +F P+ Sbjct: 136 AISAASILAKTARDAELQRLHALYPQYGFDQHKGYGTALHLARLREYGPCPEHRRSFAPI 195 Query: 205 RNLSV 209 + + Sbjct: 196 KAFGI 200 >gi|330959804|gb|EGH60064.1| putative ribonuclease HII [Pseudomonas syringae pv. maculicola str. ES4326] Length = 208 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 87/185 (47%), Positives = 116/185 (62%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP++ G+NDSKK+S KKR+ LY +I A+ SI Sbjct: 13 VVAGVDEVGRGPLCGDVVTAAVILDPSHPIQGLNDSKKLSEKKRDLLYAEICEKAVAWSI 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A+ ID+ NI +AT+ A+ AV+ L V P L+DG P +A A+IKGD + Sbjct: 73 GRATVDEIDQLNILQATMLAMQRAVQGLSVTPTLVLVDGNRCPSLPM-RAEAIIKGDGLI 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AAS++AKV RDR M+ A YP YG H GYP+ H + + G + IHR TF P Sbjct: 132 AEISAASVLAKVVRDREMQSADLLYPGYGIAGHKGYPSPVHLEALSRLGATAIHRKTFGP 191 Query: 204 LRNLS 208 +R + Sbjct: 192 VRKIL 196 >gi|323935023|gb|EGB31396.1| ribonuclease HII [Escherichia coli E1520] Length = 198 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 108/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ A AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PAMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDSEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|257869680|ref|ZP_05649333.1| ribonuclease HII [Enterococcus gallinarum EG2] gi|257803844|gb|EEV32666.1| ribonuclease HII [Enterococcus gallinarum EG2] Length = 257 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 125/194 (64%), Gaps = 3/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + +K + VAG+DEVGRG LAGPVV AA++L N G+NDSK++S KKREEL+ Sbjct: 63 FEQELYQKGLRFVAGLDEVGRGPLAGPVVAAAVVLPKNCGIIGLNDSKQLSAKKREELFI 122 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I + A+ I I A H+ ID+ NI++A+ +A+ A+ +L + P L+D ++ D Sbjct: 123 EIQNKAVAIGIGIADHEEIDRVNIYQASKNAMKRALADLSITPEHLLVD--AMTLDTDIP 180 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 ++IKGD+ S+SIAAASI+AKV RD LM+ H +P YGFD + GY T H + + G Sbjct: 181 QTSLIKGDARSISIAAASIMAKVFRDNLMKDYHGVFPHYGFDQNAGYGTKTHLEGLAAHG 240 Query: 193 PSCIHRLTFRPLRN 206 IHR TF P++ Sbjct: 241 ICPIHRKTFAPVKQ 254 >gi|262382588|ref|ZP_06075725.1| ribonuclease HII [Bacteroides sp. 2_1_33B] gi|262295466|gb|EEY83397.1| ribonuclease HII [Bacteroides sp. 2_1_33B] Length = 199 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 100/176 (56%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S KKR +L I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVFAAAVILPEDFKNQNLNDSKQLSEKKRYKLRPVIEREAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI KA+ A++ A+E L+V P LIDG V+KGD LS Sbjct: 73 VSPEEIDKINILKASFLAMHRAIEQLKVRPEHLLIDGNRFTPYPDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M +YP Y + + GYPT H++ I+E G + HR TF Sbjct: 133 IAAASVLAKTYRDDYMNELALEYPAYHWLDNKGYPTKAHREAIRECGITPYHRKTF 188 >gi|332140483|ref|YP_004426221.1| ribonuclease HII [Alteromonas macleodii str. 'Deep ecotype'] gi|254807962|sp|B4RVJ6|RNH2_ALTMD RecName: Full=Ribonuclease HII; Short=RNase HII gi|327550505|gb|AEA97223.1| ribonuclease HII [Alteromonas macleodii str. 'Deep ecotype'] Length = 190 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 111/187 (59%), Gaps = 2/187 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S KKR L ++I A Sbjct: 2 HKLIAGVDEVGRGPLVGDVVTAAVILDPQNPIEGLTDSKKLSEKKRVALAQEIREKALYW 61 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +I AS + IDK NI AT+ A+ AVE L V P +DG +P + AV+KGDS Sbjct: 62 NIGRASPEEIDKLNILHATMLAMIRAVEGLPVKPDFVRVDGNRLPA-WNFDSEAVVKGDS 120 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + I+AASIIAKV RD M H+ +P Y F H GYPT H + I E G +R +F Sbjct: 121 LHAEISAASIIAKVERDNDMISLHEAFPQYNFAGHKGYPTKAHFEAIAEYGILDCYRKSF 180 Query: 202 RPLRNLS 208 +P++ L Sbjct: 181 KPVKALL 187 >gi|253996523|ref|YP_003048587.1| Ribonuclease H [Methylotenera mobilis JLW8] gi|253983202|gb|ACT48060.1| Ribonuclease H [Methylotenera mobilis JLW8] Length = 199 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 111/195 (56%), Gaps = 10/195 (5%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 M + G+DE GRG LAG V AA+ILDP G+ DSKK+S KKR+ L +I + A Sbjct: 1 MQLICGVDEAGRGPLAGAVYAAAVILDPAKPIHGLADSKKLSEKKRDALALEIKTHALAW 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQ---------VIPRSALIDGRSIPEDLPCQ 132 ++ ++ + ID NI +A+L A+ A+E++Q + + + + Sbjct: 61 GVAHSTVEEIDAINILQASLLAMQRAIESIQNSQAVQASLTNMQLLVQVDGNKCPKISLP 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGDS +I+AASI+AK RD + ++YP YGF H GYPTA H ++++ G Sbjct: 121 CEAIVKGDSKVQAISAASILAKTARDAALYELDQQYPMYGFAQHKGYPTAAHMALLRQHG 180 Query: 193 PSCIHRLTFRPLRNL 207 S +HR ++ P+R L Sbjct: 181 VSPVHRRSYAPVRAL 195 >gi|82542782|ref|YP_406729.1| ribonuclease HII [Shigella boydii Sb227] gi|97189266|sp|Q325V7|RNH2_SHIBS RecName: Full=Ribonuclease HII; Short=RNase HII gi|81244193|gb|ABB64901.1| RNAse HII [Shigella boydii Sb227] gi|332098751|gb|EGJ03711.1| ribonuclease HII family protein [Shigella boydii 3594-74] Length = 198 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 107/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ A V+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PAMVVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|313888218|ref|ZP_07821892.1| ribonuclease HII [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845908|gb|EFR33295.1| ribonuclease HII [Peptoniphilus harei ACS-146-V-Sch2b] Length = 205 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 83/201 (41%), Positives = 114/201 (56%), Gaps = 7/201 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E EK + GIDEVGRG L G VV A+I+ G+NDSKK+S KKRE L Sbjct: 4 YNFEEEYYEKGYKNICGIDEVGRGCLFGDVVSCAVIMPRGKYIEGVNDSKKLSPKKREAL 63 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y KI SAI + I A+ IDK NI AT ++ +A+ENL+ + + + + Sbjct: 64 YLKILESAIAVGIGRANADIIDKVNIRMATHISMINALENLRDSENNKIEADCVLIDAET 123 Query: 131 CQ----AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + A++KGD SIA ASI+AKV RD L + ++YP YG + H GY T H++ Sbjct: 124 IETGIFQKAIVKGDESCYSIACASIVAKVYRDNLCKKWAEEYPQYGLEKHKGYATKYHRE 183 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +K GPS +HR TF L+N+ Sbjct: 184 ALKAYGPSDMHRKTF--LKNI 202 >gi|71907386|ref|YP_284973.1| ribonuclease HII/HIII [Dechloromonas aromatica RCB] gi|97182398|sp|Q47F78|RNH2_DECAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|71847007|gb|AAZ46503.1| RNase HII [Dechloromonas aromatica RCB] Length = 196 Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 93/188 (49%), Positives = 119/188 (63%), Gaps = 3/188 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 V GIDE GRG LAGPVV AA+ILDP G+NDSKK+S KKR+ L E I A + Sbjct: 9 GLVCGIDEAGRGPLAGPVVAAAVILDPERPIVGLNDSKKLSEKKRDALAEIIRERALAWA 68 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ A+ + ID+ NI +AT+ A+ AV LQV SAL+DG P+ AV+KGD Sbjct: 69 VAEATVEEIDRLNILQATMLAMQRAVAALQVKAESALVDGNRCPKLD-IPCEAVVKGDGK 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASI+AK RD M + H +YP YGFD H+GYPTA H ++ G S +HR +F Sbjct: 128 IASIAAASILAKTVRDAGMLVLHAQYPHYGFDRHMGYPTAAHFAALEAHGASPVHRRSFG 187 Query: 203 PL-RNLSV 209 P+ R LS+ Sbjct: 188 PVARQLSL 195 >gi|126655902|ref|ZP_01727341.1| Ribonuclease HII/HIII [Cyanothece sp. CCY0110] gi|126623381|gb|EAZ94086.1| Ribonuclease HII/HIII [Cyanothece sp. CCY0110] Length = 199 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 79/191 (41%), Positives = 113/191 (59%), Gaps = 5/191 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELY 72 + + +AG+DEVGRG L GPVV AA++L+ ++IP G+ DSKK+S K+RE L Sbjct: 4 QLFSHSQILIAGVDEVGRGCLFGPVVAAAVVLEKSSIPQLQEIGVKDSKKLSAKRRETLA 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI IS AS Q ID+ NI A+L A+ ++ L + P+ LIDG +L Sbjct: 64 TAIKNRAISYHISYASSQEIDRLNILNASLLAMKRSITKLSITPQLCLIDGNQKVPNLTI 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +I GD S IAAASI+AKV RD+L+ KYP Y +++ GY T KH+ +++ Sbjct: 124 PQETIIGGDKSSPLIAAASILAKVWRDQLIVRLAAKYPHYDLENNKGYGTKKHRLALQQY 183 Query: 192 GPSCIHRLTFR 202 G HR +F+ Sbjct: 184 GLCFHHRRSFK 194 >gi|150003938|ref|YP_001298682.1| ribonuclease HII [Bacteroides vulgatus ATCC 8482] gi|254880820|ref|ZP_05253530.1| ribonuclease HII [Bacteroides sp. 4_3_47FAA] gi|294775094|ref|ZP_06740623.1| ribonuclease HII [Bacteroides vulgatus PC510] gi|319639832|ref|ZP_07994561.1| ribonuclease HII [Bacteroides sp. 3_1_40A] gi|166225169|sp|A6L046|RNH2_BACV8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|149932362|gb|ABR39060.1| ribonuclease HII [Bacteroides vulgatus ATCC 8482] gi|254833613|gb|EET13922.1| ribonuclease HII [Bacteroides sp. 4_3_47FAA] gi|294451138|gb|EFG19609.1| ribonuclease HII [Bacteroides vulgatus PC510] gi|317388496|gb|EFV69346.1| ribonuclease HII [Bacteroides sp. 3_1_40A] Length = 201 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E + A ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEREALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ AV+ L++ P+ LIDG + V+KGD LS Sbjct: 73 VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M HK+YP Y ++S+ GYPT KH+ I+E G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNELHKEYPFYDWNSNKGYPTKKHRAAIREHGTTPYHRMTF 188 >gi|304409576|ref|ZP_07391196.1| Ribonuclease H [Shewanella baltica OS183] gi|307303934|ref|ZP_07583687.1| Ribonuclease H [Shewanella baltica BA175] gi|304352094|gb|EFM16492.1| Ribonuclease H [Shewanella baltica OS183] gi|306912832|gb|EFN43255.1| Ribonuclease H [Shewanella baltica BA175] Length = 210 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 118/200 (59%), Gaps = 6/200 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + + +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++ Sbjct: 9 EADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDE 68 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ- 132 I A + AS ID+ NI AT+ A+ AV L + P L+DG P + Sbjct: 69 ICDKALCYHVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128 Query: 133 ----AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++IKGD + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I Sbjct: 129 AGLTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAI 188 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 E G +R +F+P++ L Sbjct: 189 AEHGVFDQYRKSFKPVKALL 208 >gi|209527547|ref|ZP_03276049.1| Ribonuclease H [Arthrospira maxima CS-328] gi|209492035|gb|EDZ92388.1| Ribonuclease H [Arthrospira maxima CS-328] Length = 223 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 112/198 (56%), Gaps = 9/198 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKRE 69 +E + VAGIDEVGRGA GPVV AA+ L I G+ DSKK++H R Sbjct: 23 IEQLSW----TAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKLTHNDRL 78 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L I S AI I AS + ID+ NI +AT A+ ++ LQ P+ L+DG + + Sbjct: 79 SLSTLIRSKAIACQIGWASAREIDRLNILQATQLAMRRSILKLQPPPQFCLVDGNRLIPN 138 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A++KGDS + IAA+SI+AKV RD LM + YP YGF H GY T +H+Q + Sbjct: 139 LSIPQQAIVKGDSHCVVIAASSIVAKVWRDELMTRLDRTYPQYGFAQHKGYGTKQHKQAL 198 Query: 189 KEKGPSCIHRLTFRPLRN 206 + GP HR +F P+R Sbjct: 199 QSYGPCFHHRFSFAPVRQ 216 >gi|126173702|ref|YP_001049851.1| ribonuclease HII [Shewanella baltica OS155] gi|166226650|sp|A3D2L9|RNH2_SHEB5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|125996907|gb|ABN60982.1| RNase HII [Shewanella baltica OS155] Length = 210 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 118/200 (59%), Gaps = 6/200 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + + +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++ Sbjct: 9 EADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDE 68 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ- 132 I A + AS ID+ NI AT+ A+ AV L + P L+DG P + Sbjct: 69 ICDKALCYHVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128 Query: 133 ----AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++IKGD + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I Sbjct: 129 AELTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAI 188 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 E G +R +F+P++ L Sbjct: 189 AEHGVFDQYRKSFKPVKALL 208 >gi|296101352|ref|YP_003611498.1| ribonuclease HII [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055811|gb|ADF60549.1| ribonuclease HII [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 198 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIQEKALAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L++ P LIDG P + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLKIAPEYVLIDGNRCPALP-VPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRD M YP YGF H GYPTA H + + E G + HR +F P Sbjct: 130 AEISAASIIAKVTRDAEMAALDLTYPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|160874612|ref|YP_001553928.1| ribonuclease HII [Shewanella baltica OS195] gi|189043658|sp|A9KUL9|RNH2_SHEB9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|160860134|gb|ABX48668.1| Ribonuclease H [Shewanella baltica OS195] gi|315266853|gb|ADT93706.1| Ribonuclease H [Shewanella baltica OS678] Length = 210 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 118/200 (59%), Gaps = 6/200 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + + +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++ Sbjct: 9 EADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDE 68 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ- 132 I A + AS ID+ NI AT+ A+ AV L + P L+DG P + Sbjct: 69 ICDKALCYHVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128 Query: 133 ----AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++IKGD + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I Sbjct: 129 AGLTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAI 188 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 E G +R +F+P++ L Sbjct: 189 AEHGVFDQYRKSFKPVKALL 208 >gi|152968777|ref|YP_001333886.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893179|ref|YP_002917913.1| ribonuclease HII [Klebsiella pneumoniae NTUH-K2044] gi|262044746|ref|ZP_06017793.1| ribonuclease HII [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330001662|ref|ZP_08304088.1| ribonuclease HII [Klebsiella sp. MS 92-3] gi|166225193|sp|A6T4Y5|RNH2_KLEP7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|150953626|gb|ABR75656.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545495|dbj|BAH61846.1| ribonuclease HII [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037896|gb|EEW39120.1| ribonuclease HII [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537604|gb|EGF63824.1| ribonuclease HII [Klebsiella sp. MS 92-3] Length = 199 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 110/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALFDEIKEKALCWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L ++P LIDG P + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCPSLPM-PSQAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H Q ++E G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|50119985|ref|YP_049152.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043] gi|73917607|sp|Q6D8C9|RNH2_ERWCT RecName: Full=Ribonuclease HII; Short=RNase HII gi|49610511|emb|CAG73956.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043] Length = 198 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 84/184 (45%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSK++S K+R LY++I A S Sbjct: 11 TCIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLSLYDEIKEKALAWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L ++P LIDG P A AV+KGDS Sbjct: 71 LGRAEPEEIDQLNILHATMLAMQRAVAALAIVPDFVLIDGNRCPALPM-PAQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +++PDYGF H GYPTA H + + G + HR +F Sbjct: 130 VAEISAASIMAKVTRDREMVELDQRFPDYGFAQHKGYPTAFHLEKLAALGATEFHRRSFA 189 Query: 203 PLRN 206 P++ Sbjct: 190 PVKR 193 >gi|332828692|gb|EGK01384.1| ribonuclease HII [Dysgonomonas gadei ATCC BAA-286] Length = 199 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 100/176 (56%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPV AA+IL + +NDSK+++ K+R L I A ++ Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPKDFECEKLNDSKQLTEKERYNLRPLIEERALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 H+ IDK NI A+ A+ AV +L++ P+ LIDG + V+KGD L Sbjct: 73 VDHKEIDKINILNASFLAMQRAVASLKIRPQHLLIDGNRFKKYEDIPHTCVVKGDGKLLP 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M H +YP Y +D + GYPT KH+ IK G + HRLTF Sbjct: 133 IAAASVLAKTYRDDYMEKLHGEYPLYDWDHNKGYPTKKHRLAIKAYGVTPYHRLTF 188 >gi|225849921|ref|YP_002730155.1| ribonuclease HII [Persephonella marina EX-H1] gi|225645751|gb|ACO03937.1| ribonuclease HII [Persephonella marina EX-H1] Length = 198 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 77/192 (40%), Positives = 107/192 (55%), Gaps = 5/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++E + K +AGIDE GRG +AGPVV A++I N PF DSKK++ K+REEL Sbjct: 2 LQIEKELWSKGFKNIAGIDEAGRGPVAGPVVAASVIFPQNIEPFIFKDSKKLTKKQREEL 61 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + +I A + I + ID+ NI+ AT A+ A+E++ + D P Sbjct: 62 FTQIKERALAVGIGIVDNSVIDRINIYNATKLAMKRAIEDMNHNFDYLITDYVKF---DP 118 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ K D SLS+AAASIIAKV RDR+M K YP FD H GY T H++ I Sbjct: 119 YPHISLKKADEKSLSVAAASIIAKVFRDRIMEEFSKYYPH-SFDKHKGYLTELHREEIIR 177 Query: 191 KGPSCIHRLTFR 202 G + IHR +F+ Sbjct: 178 YGLTPIHRKSFK 189 >gi|320529141|ref|ZP_08030233.1| ribonuclease HII [Selenomonas artemidis F0399] gi|320138771|gb|EFW30661.1| ribonuclease HII [Selenomonas artemidis F0399] Length = 255 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 88/187 (47%), Positives = 114/187 (60%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 VAG+DE GRG LAGPV VAA IL +NDSKK+S K R EL+E+IT AI Sbjct: 68 GHILVAGVDEAGRGPLAGPVAVAAAILPQELYLPRLNDSKKLSAKVRAELFEEITEKAIA 127 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ ID+ NI +AT +Y AV L P L+D +P+ ++IKGD Sbjct: 128 YHVTLIDAAEIDRINILQATRRGMYEAVAALTPAPEEVLVDAVELPQLRM-PVQSIIKGD 186 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + S+SIAAASI+AKVTRDRLM +YP YGF H GY TA+H I+ +G + IHR T Sbjct: 187 AKSVSIAAASILAKVTRDRLMERYDTEYPGYGFAGHKGYGTAEHIAAIRAQGVTPIHRRT 246 Query: 201 FRPLRNL 207 F P+R++ Sbjct: 247 FEPIRSM 253 >gi|291569313|dbj|BAI91585.1| ribonuclease HII [Arthrospira platensis NIES-39] Length = 231 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 83/204 (40%), Positives = 111/204 (54%), Gaps = 7/204 (3%) Query: 10 PHFELEA--MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKI 63 P F + + + VAGIDEVGRGA GPVV AA+ L I G+ DSKK+ Sbjct: 4 PSFTYQLPPAFEQLSWTAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKL 63 Query: 64 SHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 + R L I S AI I AS + ID+ NI +AT A+ +V L P+ L+DG Sbjct: 64 TPTLRASLSTLIRSKAIACGIGWASAREIDRLNILQATQLAMRRSVLKLDPPPQLCLVDG 123 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + +L A++KGDS + IAA+SI+AKV RD LM + YP YG H GY T Sbjct: 124 NRLIPNLSIPQQAIVKGDSHCIVIAASSILAKVWRDELMTRLDRTYPQYGLAKHKGYGTK 183 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206 +H+Q ++ GP HR +F P+R Sbjct: 184 QHKQALQSYGPCFHHRFSFAPVRQ 207 >gi|284051073|ref|ZP_06381283.1| ribonuclease HII [Arthrospira platensis str. Paraca] Length = 223 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 83/204 (40%), Positives = 111/204 (54%), Gaps = 7/204 (3%) Query: 10 PHFELEA--MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKI 63 P F + + + VAGIDEVGRGA GPVV AA+ L I G+ DSKK+ Sbjct: 4 PSFTYQLPPAFEQLSWTAVAGIDEVGRGAWFGPVVAAAVQLSETTILELAAAGVKDSKKL 63 Query: 64 SHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 + R L I S AI I AS + ID+ NI +AT A+ +V L P+ L+DG Sbjct: 64 TPTLRASLSTLIRSKAIACGIGWASAREIDRLNILQATQLAMRRSVLKLDPPPQLCLVDG 123 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + +L A++KGDS + IAA+SI+AKV RD LM + YP YG H GY T Sbjct: 124 NRLIPNLSIPQQAIVKGDSHCIVIAASSILAKVWRDELMTRLDRTYPQYGLAKHKGYGTK 183 Query: 183 KHQQVIKEKGPSCIHRLTFRPLRN 206 +H+Q ++ GP HR +F P+R Sbjct: 184 QHKQALQSYGPCFHHRFSFAPVRQ 207 >gi|169342697|ref|ZP_02863738.1| ribonuclease HII [Clostridium perfringens C str. JGS1495] gi|169299203|gb|EDS81273.1| ribonuclease HII [Clostridium perfringens C str. JGS1495] Length = 272 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 88/190 (46%), Positives = 111/190 (58%), Gaps = 7/190 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSNLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 SIS + ID+ I A E L + P L DG I + + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLNIKPDLVLSDGYLIK-NFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +K+ GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKKVGPTEIHR 264 Query: 199 LTFRPLRNLS 208 ++F L+N+ Sbjct: 265 MSF--LKNIL 272 >gi|125624006|ref|YP_001032489.1| ribonuclease HII [Lactococcus lactis subsp. cremoris MG1363] gi|146345506|sp|O30415|RNH2_LACLM RecName: Full=Ribonuclease HII; Short=RNase HII gi|124492814|emb|CAL97769.1| RnhB protein [Lactococcus lactis subsp. cremoris MG1363] gi|300070776|gb|ADJ60176.1| ribonuclease HII [Lactococcus lactis subsp. cremoris NZ9000] Length = 257 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 81/197 (41%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + + +AGIDEVGRG LAGPVV AA+IL N G+NDSKK+ K + Sbjct: 59 LEFEKELYSQEIELIAGIDEVGRGPLAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A I + + ID+ NI++AT A+ AV L + P LID ++ DLP Sbjct: 119 LSEIQEKALAIGVGIVDAEKIDEVNIYEATKIAMIQAVSKLSLKPEHLLID--AMVLDLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKVTRD +M+ ++P+Y F+ + GY TAKH + + Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKDFALEFPEYDFEHNAGYGTAKHLAALTK 236 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++++ Sbjct: 237 YGITRIHRKSYEPIKSM 253 >gi|90407916|ref|ZP_01216091.1| ribonuclease HII [Psychromonas sp. CNPT3] gi|90311007|gb|EAS39117.1| ribonuclease HII [Psychromonas sp. CNPT3] Length = 204 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 84/184 (45%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILD NN G+ DSKK+S KK L+ +I A IS Sbjct: 17 DYIAGVDEVGRGPLVGDVVTAAVILDANNPIEGLADSKKLSEKKLALLFTEIQEKALCIS 76 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I AS ID NI +AT+ A+ AV+ L + P IDG P A++KGD+ Sbjct: 77 IGRASPTEIDDINILQATMLAMQRAVQGLSLQPNFVFIDGNRCPTLNMA-CEAIVKGDAR 135 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRD MR +YP YGF H GYPT H + +++ GP +R +F+ Sbjct: 136 VAEISAASIIAKVTRDGEMRELDARYPQYGFAKHKGYPTKAHFEALEKYGPIDEYRKSFK 195 Query: 203 PLRN 206 P++ Sbjct: 196 PVKK 199 >gi|82701801|ref|YP_411367.1| ribonuclease H [Nitrosospira multiformis ATCC 25196] gi|97189026|sp|Q2YB96|RNH2_NITMU RecName: Full=Ribonuclease HII; Short=RNase HII gi|82409866|gb|ABB73975.1| RNase HII [Nitrosospira multiformis ATCC 25196] Length = 199 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 107/186 (57%), Gaps = 2/186 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 V G+DE GRG LAGPV A +ILDP + G+ DSK ++ KR L I + +I Sbjct: 6 YPWVCGVDEAGRGPLAGPVFAACVILDPASPIDGLADSKTLTEGKRNSLTLAIKAYSIAW 65 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +I AS + ID+ NI +A+L A+ A+ L V P L+DG P +++GDS Sbjct: 66 AIGFASVREIDRLNILQASLLAMKRAIGKLPVTPARVLVDGNHSPRLKF-PVTTIVRGDS 124 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + I+AASI+AK RD M H+++P YGFD H GY T +H +K G S +HR +F Sbjct: 125 LVPEISAASILAKTARDAEMMALHRRFPRYGFDQHKGYSTEQHLAALKIHGVSIVHRRSF 184 Query: 202 RPLRNL 207 P+R L Sbjct: 185 APVREL 190 >gi|312796258|ref|YP_004029180.1| ribonuclease HII [Burkholderia rhizoxinica HKI 454] gi|312168033|emb|CBW75036.1| Ribonuclease HII (EC 3.1.26.4) [Burkholderia rhizoxinica HKI 454] Length = 232 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 83/185 (44%), Positives = 116/185 (62%), Gaps = 3/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-II 81 V G+DE GRG LAGPVV AA+ILDP G++DSK +S RE+L+++I + Sbjct: 29 DLVCGVDEAGRGPLAGPVVAAAVILDPAAPRIRGLDDSKALSPATREKLFDRIVERSLAY 88 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++SAS + ID NI AT+ A+ AV+ L + P +DG P ++ AVI GD+ Sbjct: 89 CVASASVEEIDTLNILHATMLAMQRAVQGLALTPALVKVDGNRCPVLS-VRSEAVIGGDA 147 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + SI+AASI+AKVTRDR+M H ++P YGFD+HVGY T +H ++ GP HR +F Sbjct: 148 LVPSISAASILAKVTRDRMMHALHDEFPHYGFDAHVGYGTPRHLAALRIHGPCVHHRRSF 207 Query: 202 RPLRN 206 P+R Sbjct: 208 APVRK 212 >gi|85059907|ref|YP_455609.1| ribonuclease HII [Sodalis glossinidius str. 'morsitans'] gi|97189300|sp|Q2NRM1|RNH2_SODGM RecName: Full=Ribonuclease HII; Short=RNase HII gi|84780427|dbj|BAE75204.1| ribonuclease HII [Sodalis glossinidius str. 'morsitans'] Length = 198 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+RE LYE+IT A S Sbjct: 11 TLIAGVDEVGRGPLVGAVVTAAVILDPARPVLGLADSKKLSEKRREALYEEITRYALAWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID NI++ATL A+ AV L V+P L+DG P + A++KGDS Sbjct: 71 VGRAEASEIDSINIYQATLLAMQRAVAALAVVPDFVLVDGNRCPLLPM-PSQAIVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRDR M H ++P+YGF H GYPTA H + + G + HR +F Sbjct: 130 VAEISAASIIAKVTRDREMAALHLQFPEYGFAQHKGYPTAFHLEKLALHGATVHHRRSFA 189 Query: 203 PLRN 206 P+R Sbjct: 190 PVRR 193 >gi|300902002|ref|ZP_07120029.1| ribonuclease HII [Escherichia coli MS 84-1] gi|301305319|ref|ZP_07211415.1| ribonuclease HII [Escherichia coli MS 124-1] gi|300405888|gb|EFJ89426.1| ribonuclease HII [Escherichia coli MS 84-1] gi|300839424|gb|EFK67184.1| ribonuclease HII [Escherichia coli MS 124-1] gi|315254985|gb|EFU34953.1| ribonuclease HII [Escherichia coli MS 85-1] Length = 198 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 108/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P+ A AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PAMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P Sbjct: 130 PEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|284032640|ref|YP_003382571.1| Ribonuclease H [Kribbella flavida DSM 17836] gi|283811933|gb|ADB33772.1| Ribonuclease H [Kribbella flavida DSM 17836] Length = 232 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 105/198 (53%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + E +R + P+AG+DE GRG AGP+V AA+IL + DSK ++ K RE Sbjct: 17 YGYERALRRVGLDPIAGVDEAGRGPCAGPLVAAAVILPDGKRGQIPELADSKLLTAKARE 76 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 Y++I A S+ S D+ +H A + A+ A+ L V P+ L DG + Sbjct: 77 RCYDEIRKRALAWSVVSIEADECDRLGMHVANVQALRRALFRLDVRPQYVLTDGF-GVDG 135 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A+ KGD ++ IAAAS++AKVTRDR+M YP YGF H GY T +HQ + Sbjct: 136 LGVPGLAIWKGDRVAACIAAASVVAKVTRDRIMEHWDTVYPQYGFAIHKGYCTPEHQAAL 195 Query: 189 KEKGPSCIHRLTFRPLRN 206 E GP HR F +R Sbjct: 196 DEYGPCPQHRRRFENVRR 213 >gi|89890457|ref|ZP_01201967.1| ribonuclease HII, RNase HII [Flavobacteria bacterium BBFL7] gi|89517372|gb|EAS20029.1| ribonuclease HII, RNase HII [Flavobacteria bacterium BBFL7] Length = 199 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 104/177 (58%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG L GPV AA+IL P+ ++DSKK+S K+R +L I AI +S Sbjct: 13 CGTDEAGRGCLCGPVTAAAVILPPDFKSDLLDDSKKLSRKRRYQLRSLIEEHAISYHVSH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI A++ A++ A++ L++ P +DG QA VIKGD L Sbjct: 73 VMMETIDEINILNASILAMHQAIDGLKINPEHIAVDGNRFKPYADIQATTVIKGDGKYLH 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M +++P+Y + + GYPT KH++ IK+ G + HR+TF+ Sbjct: 133 IAAASILAKTYRDDYMEKIAREHPEYDWHKNQGYPTKKHREAIKKYGTTPYHRMTFK 189 >gi|242240382|ref|YP_002988563.1| ribonuclease HII [Dickeya dadantii Ech703] gi|242132439|gb|ACS86741.1| Ribonuclease H [Dickeya dadantii Ech703] Length = 198 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 84/182 (46%), Positives = 110/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSK++S K+R LY++I A S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPAKPIAGLADSKQLSEKRRRVLYDEIREKARAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L V P LIDG P + AV+KGDS Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVAGLPVTPDYVLIDGNRCPSLPM-PSMAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M K +P+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMEELDKLFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAPV 191 Query: 205 RN 206 + Sbjct: 192 KR 193 >gi|324112406|gb|EGC06383.1| ribonuclease HII [Escherichia fergusonii B253] gi|325496115|gb|EGC93974.1| ribonuclease HII [Escherichia fergusonii ECD227] Length = 198 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 108/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P Sbjct: 130 PEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|270308093|ref|YP_003330151.1| ribonuclease HII [Dehalococcoides sp. VS] gi|270153985|gb|ACZ61823.1| ribonuclease HII [Dehalococcoides sp. VS] Length = 211 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 80/202 (39%), Positives = 108/202 (53%), Gaps = 5/202 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66 P + E + ++ +AG+DE GRG LAGPVV A+I+ P + DSK ++ + Sbjct: 7 PGWAEEKQLWKQGFSSIAGLDEAGRGCLAGPVVAGAVIMPPRLKGEWVAMVRDSKVLTLE 66 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE LY I S AI + + ID I AT A+ AVE+L L+ Sbjct: 67 KREYLYCHIVSMAISFGVGVVDNTQIDCLGIAPATRLAMKQAVEHLD-CRPDYLLVDYLK 125 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 D+P ++ GD++ SIA ASIIAKV+RDRLM YP Y H GY TA H Sbjct: 126 LPDIPLPQKGIVDGDALCFSIACASIIAKVSRDRLMCELDATYPGYHLAKHKGYGTALHM 185 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + I +KG S IHR TF PL+++ Sbjct: 186 ECISQKGISPIHRRTFAPLKSM 207 >gi|283768287|ref|ZP_06341199.1| ribonuclease HII [Bulleidia extructa W1219] gi|283104679|gb|EFC06051.1| ribonuclease HII [Bulleidia extructa W1219] Length = 200 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 71/196 (36%), Positives = 110/196 (56%), Gaps = 6/196 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + V GIDE GRG LAG + VA +I I DSK IS KKRE L+ Sbjct: 7 EYEKKAWFSSKRLV-GIDEAGRGPLAGSLFVAGVIFPIGYENEEIYDSKAISEKKREHLF 65 Query: 73 EKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I AI I + ID+ NI++AT +A+ + ++ ++P +L Sbjct: 66 KQIQQDAIWFQIIEVPVEVIDEKNIYQATKEAMLEIAQKA----PCEVVLTDAMPLNLDK 121 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD S+SIAAASI+AKV+RD +M +++P YG + GYPT +H++ +K Sbjct: 122 EVHDLVKGDQKSISIAAASILAKVSRDHVMVELDRQFPGYGLAKNKGYPTKEHREALKAL 181 Query: 192 GPSCIHRLTFRPLRNL 207 G + IHR ++ P++ + Sbjct: 182 GITKIHRRSYGPVKKI 197 >gi|319952346|ref|YP_004163613.1| ribonuclease h [Cellulophaga algicola DSM 14237] gi|319421006|gb|ADV48115.1| Ribonuclease H [Cellulophaga algicola DSM 14237] Length = 198 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 67/177 (37%), Positives = 96/177 (54%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 G DE GRG LAGPV AA++L N +NDSKK+S KR L I A +++ Sbjct: 12 IGTDEAGRGCLAGPVTAAAVVLPENFTNTLLNDSKKLSEIKRFSLKPIIEEFALSFAVTH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID NI A++ A+ +V L R ++DG +IKGD +S Sbjct: 72 IEPLIIDDINILNASILAMQKSVLKLDTTARHIIVDGNRFKPMKNYSYDCIIKGDGKYMS 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD +M + H+++P Y + + GYPT +H+ I++ G + HR +FR Sbjct: 132 IAAASILAKTYRDEVMNVLHEEFPMYNWKQNKGYPTKEHRAAIRKYGITKYHRKSFR 188 >gi|126654070|ref|ZP_01725896.1| ribonuclease HII [Bacillus sp. B14905] gi|126589450|gb|EAZ83597.1| ribonuclease HII [Bacillus sp. B14905] Length = 253 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 4/185 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DE GRG LAGPVV AA+IL N+ G+NDSK++S KR I AI Sbjct: 69 LIAGVDEAGRGPLAGPVVTAAVILPTNSEALVGLNDSKQLSKDKRNAFAALIKEHAISYF 128 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I Q ID+ NI++AT ++ +VE+L P L+D ++ + ++IKGD+ Sbjct: 129 IHFQPAQQIDELNIYEATKQSMKASVESLSRKPDYVLVD--AMTLPMAIPQDSIIKGDAK 186 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SL+IAAASI+AK RD M K +P YGF H GY T +H + ++E GP+ HR +F Sbjct: 187 SLAIAAASILAKTARDDYMEQLDKDFPMYGFAQHAGYGTKQHLKALEEYGPTIHHRKSFE 246 Query: 203 PLRNL 207 P++++ Sbjct: 247 PVKSM 251 >gi|312143696|ref|YP_003995142.1| Ribonuclease H [Halanaerobium sp. 'sapolanicus'] gi|311904347|gb|ADQ14788.1| Ribonuclease H [Halanaerobium sp. 'sapolanicus'] Length = 265 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 82/196 (41%), Positives = 117/196 (59%), Gaps = 4/196 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 L+ + V GIDE GRG LAGPVV AA++LD +G++DSKK+S +KRE+L Sbjct: 68 SLQEKLESNGYQAVIGIDEAGRGPLAGPVVAAAVLLDSTKPIYGLDDSKKLSREKREKLL 127 Query: 73 EKITSSAIISISSASHQYIDKHN----IHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E+I A + I AS + IDK+N A A+ + + L+ P L+DG ++ D Sbjct: 128 EEIKKKAKVGIGQASSKEIDKYNIREATFAAMKRAVKNLLPQLEEKPDLLLVDGNTVIPD 187 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AVI GD+ SIAAASI AKV+RD+++ ++YP+Y F S+ GY TA+H + Sbjct: 188 LKIDQKAVIDGDAKINSIAAASIAAKVSRDQIIFEYAEEYPEYNFKSNKGYGTAEHIAAL 247 Query: 189 KEKGPSCIHRLTFRPL 204 +E G S IHR +F + Sbjct: 248 EEHGSSPIHRKSFGRV 263 >gi|290968507|ref|ZP_06560046.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L] gi|290781503|gb|EFD94092.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L] Length = 264 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 110/196 (56%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +E E M + ++ +AGIDE GRG +AGPV++AA+IL P G+NDSKKI+ KRE L Sbjct: 62 YEPENMFYRQGIYEIAGIDEAGRGPVAGPVMIAAVILPPFWECAGLNDSKKIAPSKREAL 121 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YEKI A+ A + + +P A++ +L Sbjct: 122 YEKIMQEAVAVSCIAKERAEIDVADIYHATRQGMYEAVQALAVPPKAVLVDAMPLSELTV 181 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++I GD+IS SIAAASIIAKVTRDR+MR K YP YGF H GY T H I++ Sbjct: 182 PHRSLIHGDAISASIAAASIIAKVTRDRVMREYDKVYPQYGFAVHKGYLTQAHADAIRKF 241 Query: 192 GPSCIHRLTFRPLRNL 207 GP IHR +F P++++ Sbjct: 242 GPCPIHRHSFEPIKSI 257 >gi|327313027|ref|YP_004328464.1| ribonuclease HII [Prevotella denticola F0289] gi|326944091|gb|AEA19976.1| ribonuclease HII [Prevotella denticola F0289] Length = 200 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL P ++DSKK++ +KR L + I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPGYQNSLLDDSKKLTARKRYALRDTIEHDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ A++ L+V P + ++DG +IKGD LS Sbjct: 73 VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y + ++GYPT KH+Q I+E G + HR ++ Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRRSY 188 >gi|284040939|ref|YP_003390869.1| ribonuclease H [Spirosoma linguale DSM 74] gi|283820232|gb|ADB42070.1| Ribonuclease H [Spirosoma linguale DSM 74] Length = 191 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 80/177 (45%), Positives = 113/177 (63%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DEVGRG LAGPVV AA+IL + +NDSK++SH++RE L + I AI +++ Sbjct: 13 AGLDEVGRGCLAGPVVAAAVILPKDYTHPILNDSKQLSHRQRELLKQDIERDAIAWAVAE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 SH+ ID+ NI KA+ A++ AV+ L V P L+DG +IKGD+ LS Sbjct: 73 VSHEDIDRINILKASFLAMHRAVDALTVKPEHLLVDGNRFVPYPMTPHTCIIKGDAHYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAAS++AK RD LM ++P YG+ +VGYPT H+ I++ GP+ HR++FR Sbjct: 133 IAAASVLAKTYRDDLMAQLGLEFPAYGWAQNVGYPTPIHRAAIRQFGPTKYHRMSFR 189 >gi|332527884|ref|ZP_08403921.1| ribonuclease HII [Rubrivivax benzoatilyticus JA2] gi|332112461|gb|EGJ12254.1| ribonuclease HII [Rubrivivax benzoatilyticus JA2] Length = 214 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 115/183 (62%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE G G LAGPVV AA+ILD G+ DSK +S ++RE L+++I + A +S Sbjct: 22 GLVAGVDEAGCGPLAGPVVAAAVILDDQAPIAGLADSKALSARQRERLFDEIHARALCVS 81 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + ID NI A L A+ AVE L+++P+ ++DG +P A AV+ GD+ Sbjct: 82 IALASVEEIDTLNILHARLLAMKRAVETLRLLPKRVMVDGNRLPVLRF-PAEAVVGGDAK 140 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDRL H ++PDYGFD H GYPT H ++ G HR +F Sbjct: 141 VPAISAASIVAKVHRDRLCAELHARWPDYGFDGHKGYPTRVHLDALRRLGACPEHRRSFA 200 Query: 203 PLR 205 P+R Sbjct: 201 PVR 203 >gi|300024712|ref|YP_003757323.1| ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] gi|299526533|gb|ADJ25002.1| Ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] Length = 274 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 110/195 (56%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + + VAG+DE G LAGPV AA+I P ++DSKK+ R+ L Sbjct: 61 LRFETSLWKTGVQFVAGVDEAGMSPLAGPVSAAAVIFAPGTRIADVDDSKKLDAATRDRL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I ++AI S+ A + ID+ NI+ A L A+ AVE L P+ LID R I DL Sbjct: 121 AIEIKATAIAWSVGFAEVEEIDRINIYWAGLLAMRRAVEGLATQPQHVLIDARRIK-DLA 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++KGD+ SL+IAAASI+AK RD LMR +P YGF H GYP +H + + Sbjct: 180 IPQQPIVKGDAKSLTIAAASILAKTARDALMRKLDGDHPGYGFSKHKGYPVREHLAALTK 239 Query: 191 KGPSCIHRLTFRPLR 205 G S +HR +F P+R Sbjct: 240 LGASPVHRRSFAPVR 254 >gi|221633032|ref|YP_002522257.1| ribonuclease HII [Thermomicrobium roseum DSM 5159] gi|221155904|gb|ACM05031.1| ribonuclease HII [Thermomicrobium roseum DSM 5159] Length = 219 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 80/196 (40%), Positives = 115/196 (58%), Gaps = 3/196 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHK 66 ERP FELE + + VAG+DEVGRGALAGPVV AA I +P+ P + DSK+++ Sbjct: 16 ERPTFELEQALWQAGNRWVAGVDEVGRGALAGPVVAAACIFEPSTELPDQLRDSKRLTDP 75 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L + + + +I +ASH+ +D+ I +AT A+ A++ L + L DG + Sbjct: 76 QRRALADWVRQYSLRWAIGAASHREVDRLGIVRATALAMLRALQRLGPVDH-VLYDGLPL 134 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 E AV+ GD SIAAASI+AKV RD LM +YP YG++ + GY T H+ Sbjct: 135 TEFERLPGTAVVHGDMRCASIAAASILAKVIRDDLMARLAVRYPGYGWEENAGYGTPSHR 194 Query: 186 QVIKEKGPSCIHRLTF 201 + I+E G + HR +F Sbjct: 195 RAIRELGSTPFHRRSF 210 >gi|182625835|ref|ZP_02953601.1| ribonuclease HII [Clostridium perfringens D str. JGS1721] gi|177908869|gb|EDT71361.1| ribonuclease HII [Clostridium perfringens D str. JGS1721] Length = 272 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 89/190 (46%), Positives = 111/190 (58%), Gaps = 7/190 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 SIS + ID+ I A E L + P L DG I + + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLNIKPDLVLSDGYLIK-NFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNLS 208 ++F L+N+ Sbjct: 265 MSF--LKNIL 272 >gi|110801760|ref|YP_698993.1| ribonuclease HII [Clostridium perfringens SM101] gi|123047313|sp|Q0SSB4|RNH2_CLOPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|110682261|gb|ABG85631.1| ribonuclease HII [Clostridium perfringens SM101] Length = 272 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 89/190 (46%), Positives = 111/190 (58%), Gaps = 7/190 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSNLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 SIS + ID+ I A E L + P L DG I + + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLNIKPDLVLSDGYLIK-NFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNLS 208 ++F L+N+ Sbjct: 265 MSF--LKNIL 272 >gi|33592531|ref|NP_880175.1| ribonuclease HII [Bordetella pertussis Tohama I] gi|33596188|ref|NP_883831.1| ribonuclease HII [Bordetella parapertussis 12822] gi|33601596|ref|NP_889156.1| ribonuclease HII [Bordetella bronchiseptica RB50] gi|39932320|sp|Q7VYB6|RNH2_BORPE RecName: Full=Ribonuclease HII; Short=RNase HII gi|39932326|sp|Q7WA46|RNH2_BORPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|39932331|sp|Q7WJ80|RNH2_BORBR RecName: Full=Ribonuclease HII; Short=RNase HII gi|33572177|emb|CAE41723.1| ribonuclease HII [Bordetella pertussis Tohama I] gi|33573191|emb|CAE36843.1| ribonuclease HII [Bordetella parapertussis] gi|33576032|emb|CAE33112.1| ribonuclease HII [Bordetella bronchiseptica RB50] gi|332381949|gb|AEE66796.1| ribonuclease HII [Bordetella pertussis CS] Length = 201 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 110/182 (60%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DE GRG LAG V AA+ILDP+ G+ DSK + ++RE L +I + A + Sbjct: 16 IIAGVDEAGRGPLAGAVYAAAVILDPDRPVDGLADSKVLKAEQREALAVQIRAQALAWFV 75 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS Q ID NI +AT+ A+ AV L + P A++DG L C VIKGD++ Sbjct: 76 ASASVQEIDSLNILRATMLAMQRAVAGLAMAPELAMVDGN-QAPKLRCAVQTVIKGDALV 134 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD + H YP YGFD H GY T +H +++E GP HR +F P Sbjct: 135 PAISAASILAKTARDADLLRLHALYPQYGFDQHKGYGTPQHLSLLREHGPCPEHRRSFAP 194 Query: 204 LR 205 ++ Sbjct: 195 IK 196 >gi|225011416|ref|ZP_03701854.1| Ribonuclease H [Flavobacteria bacterium MS024-2A] gi|225003919|gb|EEG41891.1| Ribonuclease H [Flavobacteria bacterium MS024-2A] Length = 196 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 67/181 (37%), Positives = 104/181 (57%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPV AA+IL N +NDSKK++ K+R L +I A +++ Sbjct: 12 AGTDEAGRGCLAGPVTAAAVILPKKNNLPLLNDSKKLTEKQRYALRPEIEKQALAYAVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI A++ A++ A++ L +IP ++DG + V+KGD + Sbjct: 72 VYQEEIDEINILNASIKAMHLALKQLSLIPEFIVVDGNRFKQFEDIPHACVVKGDGKYQN 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAAS++AK RD M+ ++P Y ++ + GYPT KH++ I G + HR++F+ L Sbjct: 132 IAAASVLAKTYRDDYMKKLDTEFPQYNWNKNKGYPTKKHREAIATFGITVHHRISFQLLS 191 Query: 206 N 206 Sbjct: 192 K 192 >gi|119713524|gb|ABL97577.1| ribonuclease [uncultured marine bacterium EB0_35D03] Length = 191 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 75/189 (39%), Positives = 102/189 (53%), Gaps = 7/189 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG L G V+ AA+ N G+ DSKK++ KKRE Y +I S+ Sbjct: 2 IIIGVDEAGRGPLVGSVIAAAVAFPENFYLEGLTDSKKLTEKKRESFYSQIVQKCNWSVG 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS------IPEDLPCQAFAVIK 138 AS ID+ NI +AT+ A+ AV NLQ+ + D + A++K Sbjct: 62 EASSIEIDQINILQATMLAMKRAVNNLQLELSISDKDDQFKVLVDGNQCPDVGNCQAIVK 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IH 197 GD I I+AAS+IAKVTRDR M+ YP YGF H GY T +H + + GP IH Sbjct: 122 GDLIEPVISAASVIAKVTRDRQMKELDLNYPGYGFAKHKGYGTREHLDALNKFGPIKGIH 181 Query: 198 RLTFRPLRN 206 R +F P++N Sbjct: 182 RASFAPIKN 190 >gi|227824335|ref|ZP_03989167.1| ribonuclease HII [Acidaminococcus sp. D21] gi|226904834|gb|EEH90752.1| ribonuclease HII [Acidaminococcus sp. D21] Length = 270 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 111/197 (56%), Gaps = 2/197 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + E+ VAG DE GRG LAGP+V AA+IL G+NDSKK+ K+RE LY Sbjct: 57 EPERIFWEQGFVHVAGTDEAGRGPLAGPLVTAAVILPHEIDLPGLNDSKKVPPKRREALY 116 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A +++ Q ID NI++A ++ + +L P +AL D + Sbjct: 117 DEILQQALAVTVRILGPQEIDTLNIYQAAKQSMQMCLTHLSAAPDAALTDAM-PLSLVGI 175 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++ GD+ S +IAAASIIAKVTRDR+M + YP YGF S+ GY + H + Sbjct: 176 PVKDLVHGDARSAAIAAASIIAKVTRDRIMVELDQTYPGYGFSSNKGYGSKAHLDALAAL 235 Query: 192 GPSCIHRLTFRPLRNLS 208 G + HR T+ P++ L+ Sbjct: 236 GVTPWHRRTYEPIKGLA 252 >gi|119898186|ref|YP_933399.1| ribonuclease HII [Azoarcus sp. BH72] gi|166225166|sp|A1K6Q7|RNH2_AZOSB RecName: Full=Ribonuclease HII; Short=RNase HII gi|119670599|emb|CAL94512.1| Ribonuclease H [Azoarcus sp. BH72] Length = 204 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 78/191 (40%), Positives = 110/191 (57%), Gaps = 2/191 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + + + G+DE GRG L GPVV AA+ILDP G+ DSKK++ + R+ L I Sbjct: 3 ASQRLRLICGVDEAGRGPLCGPVVAAAVILDPARPIDGLADSKKLTERARDRLAPLIRER 62 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A +++ AS + ID+ NI AT+ A+ AV L V+P LIDG P A AV+ Sbjct: 63 ALAWAVAEASVEEIDRLNILHATMLAMQRAVSALSVLPGEVLIDGNRCPTLA-VPARAVV 121 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD+ +I+AASI+AK RD M+ H++YP YG H GYPTA H ++ G + + Sbjct: 122 GGDASEPAISAASILAKTVRDAGMKALHEQYPHYGLADHKGYPTAGHLAALRRHGIADFY 181 Query: 198 RLTFRPLRNLS 208 R +F P+R L Sbjct: 182 RRSFGPVRELL 192 >gi|170021464|ref|YP_001726418.1| ribonuclease HII [Escherichia coli ATCC 8739] gi|194439910|ref|ZP_03071972.1| ribonuclease HII [Escherichia coli 101-1] gi|253774790|ref|YP_003037621.1| ribonuclease HII [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160302|ref|YP_003043410.1| ribonuclease HII [Escherichia coli B str. REL606] gi|300932137|ref|ZP_07147422.1| ribonuclease HII [Escherichia coli MS 187-1] gi|312970284|ref|ZP_07784466.1| ribonuclease HII family protein [Escherichia coli 1827-70] gi|189043595|sp|B1IQF8|RNH2_ECOLC RecName: Full=Ribonuclease HII; Short=RNase HII gi|169756392|gb|ACA79091.1| Ribonuclease H [Escherichia coli ATCC 8739] gi|194421156|gb|EDX37181.1| ribonuclease HII [Escherichia coli 101-1] gi|242376014|emb|CAQ30697.1| RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli BL21(DE3)] gi|253325834|gb|ACT30436.1| Ribonuclease H [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972203|gb|ACT37874.1| ribonuclease HII [Escherichia coli B str. REL606] gi|253976412|gb|ACT42082.1| ribonuclease HII [Escherichia coli BL21(DE3)] gi|300460113|gb|EFK23606.1| ribonuclease HII [Escherichia coli MS 187-1] gi|310337782|gb|EFQ02893.1| ribonuclease HII family protein [Escherichia coli 1827-70] gi|323959944|gb|EGB55591.1| ribonuclease HII [Escherichia coli H489] Length = 198 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 108/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 71 GRAEPYEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P Sbjct: 130 PEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|261822585|ref|YP_003260691.1| ribonuclease HII [Pectobacterium wasabiae WPP163] gi|261606598|gb|ACX89084.1| Ribonuclease H [Pectobacterium wasabiae WPP163] Length = 198 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 84/184 (45%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S Sbjct: 11 TCIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKKLSEKRRLALYDEINEKALAWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L ++P LIDG P +A AV+KGDS Sbjct: 71 LGRAEPEEIDQLNILHATMLAMQRAVAGLSIVPDFVLIDGNRCPALPM-RAQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G + HR +F Sbjct: 130 VAEISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFA 189 Query: 203 PLRN 206 P++ Sbjct: 190 PVKR 193 >gi|290512456|ref|ZP_06551822.1| ribonuclease HII [Klebsiella sp. 1_1_55] gi|289774797|gb|EFD82799.1| ribonuclease HII [Klebsiella sp. 1_1_55] Length = 198 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L ++I A S+ Sbjct: 10 LVAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALCDEIKEKALCWSL 69 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L ++P LIDG P + AV+KGDS Sbjct: 70 GRAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCPSLPM-PSLAVVKGDSRV 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H Q ++E G + HR +F P Sbjct: 129 AEISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGP 188 Query: 204 LRN 206 ++ Sbjct: 189 VKR 191 >gi|332884737|gb|EGK04993.1| ribonuclease HII [Dysgonomonas mossii DSM 22836] Length = 199 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 74/189 (39%), Positives = 106/189 (56%), Gaps = 3/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE + + AG DE GRG LAG V AA+IL + I +NDSK+++ K+R L Sbjct: 2 LELSLYPDLIE--AGCDEAGRGCLAGAVFAAAVILPKDFICEKLNDSKQLTEKERYALRP 59 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I A +I + + ID+ NI A+ A+ AV +L+ P+ LIDG + Sbjct: 60 LIEEQALAWAIGIVNQKEIDEINILNASFLAMQRAVASLKTRPQHLLIDGNRFRKYEDIP 119 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 V+KGD L IAAAS++AK RD M H+++P Y +D + GYPT KH++ I++ G Sbjct: 120 HTCVVKGDGKLLPIAAASVLAKTYRDDYMLNLHREHPLYDWDHNKGYPTKKHREAIEKYG 179 Query: 193 PSCIHRLTF 201 + HRLTF Sbjct: 180 VTPYHRLTF 188 >gi|313619218|gb|EFR90981.1| ribonuclease HII [Listeria innocua FSL S4-378] Length = 261 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 119/194 (61%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK+++ KR+ L+ Sbjct: 60 RYETDLFKQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDILF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I AI I I H ID+ NI++AT A+ A+E L P LID ++P Sbjct: 120 DVIKEEAISIGIGIIDHDVIDQVNIYEATKIAMRTALEELNPAPDFVLID--AMPLKYSE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDR+M+ YP Y F +++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRMMQQYDALYPGYDFVNNMGYGTKKHLNGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHRL+F P++ Sbjct: 238 GICPIHRLSFSPVK 251 >gi|295132562|ref|YP_003583238.1| ribonuclease HII [Zunongwangia profunda SM-A87] gi|294980577|gb|ADF51042.1| ribonuclease HII [Zunongwangia profunda SM-A87] Length = 199 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSSAIISISS 85 G DE GRG +AGPV AA+IL + + DSKK++H+KR L + I A I+ Sbjct: 13 CGTDEAGRGCIAGPVTAAAVILPKHFENEFLRDSKKLTHQKRLLLKKIIENDCASYGITH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI +++ A++ ++E L P ++DG ++KGD LS Sbjct: 73 IFMETIDEINILNSSILAMHKSIEKLSPEPEHIIVDGNRFKPFKNIAYECIVKGDDKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M H++YP Y + + GYPT +H++ I++ G + HR +F+ Sbjct: 133 IAAASILAKTYRDEYMESIHEEYPMYNWKKNKGYPTKEHREAIRKYGITKYHRKSFK 189 >gi|206579509|ref|YP_002240329.1| ribonuclease HII [Klebsiella pneumoniae 342] gi|288937035|ref|YP_003441094.1| ribonuclease H [Klebsiella variicola At-22] gi|238056780|sp|B5Y1I8|RNH2_KLEP3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|206568567|gb|ACI10343.1| ribonuclease HII [Klebsiella pneumoniae 342] gi|288891744|gb|ADC60062.1| Ribonuclease H [Klebsiella variicola At-22] Length = 199 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L ++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPAKPIVGLNDSKKLSEKRRLALCDEIKEKALCWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L ++P LIDG P + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLSIVPEFVLIDGNRCPSLPM-PSLAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H Q ++E G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMATLDLAFPHYGFAQHKGYPTAVHLQKLQEHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|42560965|ref|NP_975416.1| ribonuclease H II [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81829391|sp|Q6MTH8|RNH2_MYCMS RecName: Full=Ribonuclease HII; Short=RNase HII gi|42492462|emb|CAE77058.1| ribonuclease H II [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321294|gb|ADK69937.1| ribonuclease HII [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 207 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 76/188 (40%), Positives = 114/188 (60%), Gaps = 1/188 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 N+ ++G DE GRG LAGP+VVA++IL P+ I DSKK++ K R+ LY++I + Sbjct: 16 NITYLSGSDEAGRGCLAGPLVVASVILKPDYFNPLIKDSKKLNPKTRQVLYDEIIKNCLD 75 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I S + +D+ N +A+L + NL++ P ALIDG E + +IKGD Sbjct: 76 YQIIIISSKQVDELNPLQASLLGFKTTINNLKITPDLALIDGNQNIELTNIKTLQIIKGD 135 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SIA +SI+AKVTRD+++ + YP+Y F SH GY T KH I++ G IHR + Sbjct: 136 DKSFSIACSSILAKVTRDKILDEYDQIYPNYDFKSHKGYCTKKHLLAIQKYGILDIHRKS 195 Query: 201 FRPLRNLS 208 ++P++ +S Sbjct: 196 YKPIKKIS 203 >gi|189219283|ref|YP_001939924.1| Ribonuclease HII [Methylacidiphilum infernorum V4] gi|189186141|gb|ACD83326.1| Ribonuclease HII [Methylacidiphilum infernorum V4] Length = 226 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 73/202 (36%), Positives = 112/202 (55%), Gaps = 4/202 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKRE 69 E + K +AGIDEVGRGA+AGPVV AA+IL + + DSK + KKR+ Sbjct: 5 DLSYEKRLLTKGYRVIAGIDEVGRGAIAGPVVAAAVILPQDLPFHKYLKDSKAVEEKKRK 64 Query: 70 ELYEKITSSAIISIS--SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 ++ + + IS + + I++ NIH + L A+ A+ L+ P L+DG P Sbjct: 65 QVVQWLLKEGRISFGLGFSFVEEIERINIHGSCLLAMRRAISCLEERPDILLVDGIFSPP 124 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L + ++ GD+ SIAAAS++AKV+RD M YP+YG++ + GY TA H + Sbjct: 125 HLSIPSLTIVGGDAKVASIAAASLVAKVSRDGWMVKLSSLYPEYGWEKNKGYGTANHFES 184 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 ++ KG S HR +F ++ L + Sbjct: 185 LRTKGLSPYHRKSF-LVKRLHL 205 >gi|227114701|ref|ZP_03828357.1| ribonuclease HII [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 198 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKKLSEKRRLSLYDEIKEKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID+ NI AT+ A+ AV L V+P LIDG P A AV+KGDS Sbjct: 73 RAEPEEIDQLNILHATMLAMQRAVAGLAVVPDFVLIDGNRCPALPM-PAQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFAPV 191 Query: 205 RN 206 R Sbjct: 192 RR 193 >gi|304440378|ref|ZP_07400267.1| ribonuclease HII [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371130|gb|EFM24747.1| ribonuclease HII [Peptoniphilus duerdenii ATCC BAA-1640] Length = 203 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 113/200 (56%), Gaps = 8/200 (4%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E+E +K + V GIDEVGRG L G VV AA+I+ IP G+NDSKK++ +R ELY Sbjct: 3 EIEKNYYDKGLDLVCGIDEVGRGCLFGDVVAAAVIMPKTRIP-GVNDSKKLTELRRAELY 61 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVEN----LQVIPRSALIDGRSIPE 127 +KI SS + I IDK NI AT A+ AV+N ++ + Sbjct: 62 DKILSSCVAYGIGIMDSVTIDKINIKMATHLAMLLAVQNLRAKDGSKVDPNVLLIDAEHL 121 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + +++KGD SIA ASI+AKV RDRL K+YP Y + H GY T KH+++ Sbjct: 122 ETDIPQESIVKGDEKVYSIACASIVAKVYRDRLCEKWGKEYPGYEIEKHKGYGTKKHREI 181 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + EKGP+ HR +F L+N+ Sbjct: 182 LLEKGPTPHHRKSF--LKNM 199 >gi|291543926|emb|CBL17035.1| RNase HII [Ruminococcus sp. 18P13] Length = 205 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 82/198 (41%), Positives = 121/198 (61%), Gaps = 5/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE + VR G+DE GRG LAG V AA++L P+ + G++DSKK++ K+RE L Sbjct: 12 FEYDEAVRNS-YPVFCGVDEAGRGPLAGDVYAAAVVLPPDVVIPGLDDSKKLTEKRREAL 70 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I + A I++A+ + I++ NI +A + A+ AV L + + LIDG +P + Sbjct: 71 YDEIIAKASACCIAAATVEEIEQLNILQAAMLAMTRAVSGLDIPVQCVLIDGNRLPR-MN 129 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 AVI GD+ S SIAAAS++AKV RDR M ++YP+YGF H GY T H + + Sbjct: 130 LPMQAVIHGDATSASIAAASVLAKVARDRYMLALDQQYPEYGFCKHKGYGTKAHYEALAA 189 Query: 191 KGPSCIHRLTFRPLRNLS 208 G S +HR +F L+NL+ Sbjct: 190 HGISPVHRRSF--LKNLT 205 >gi|153812956|ref|ZP_01965624.1| hypothetical protein RUMOBE_03363 [Ruminococcus obeum ATCC 29174] gi|149830903|gb|EDM85993.1| hypothetical protein RUMOBE_03363 [Ruminococcus obeum ATCC 29174] Length = 251 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 86/190 (45%), Positives = 118/190 (62%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + GIDEVGRG LAGPVV A+IL ++ +NDSKK++ KREELY Sbjct: 60 QFEHKYEHLGY--LCGIDEVGRGPLAGPVVACAVILPKDHPILYLNDSKKLTAHKREELY 117 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ + + AS ID+ NI +AT +A+ AV L V+P+ L D +IP + Sbjct: 118 DVIMREAVAVGLGMASPARIDEINILQATYEAMRQAVSKLAVMPQLLLNDAVTIP-GIEI 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAASI+AKVTRDRLM K P+YGF S+ GY +A+H +++ Sbjct: 177 PQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDKTMPEYGFASNKGYGSAEHIAALQKY 236 Query: 192 GPSCIHRLTF 201 GP+ IHR +F Sbjct: 237 GPTPIHRASF 246 >gi|253687351|ref|YP_003016541.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494070|sp|C6DAJ7|RNH2_PECCP RecName: Full=Ribonuclease HII; Short=RNase HII gi|251753929|gb|ACT12005.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 198 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 83/184 (45%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSK++S K+R LY++I A S Sbjct: 11 TCIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLALYDEIKEKALAWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L V+P LIDG P + AV+KGDS Sbjct: 71 LGRAEPEEIDQLNILHATMLAMQRAVAGLAVVPDFVLIDGNRCPALPM-PSQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G + HR +F Sbjct: 130 VAEISAASIMAKVTRDREMVELDERFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFA 189 Query: 203 PLRN 206 P++ Sbjct: 190 PVKR 193 >gi|300920135|ref|ZP_07136586.1| ribonuclease HII [Escherichia coli MS 115-1] gi|300412832|gb|EFJ96142.1| ribonuclease HII [Escherichia coli MS 115-1] Length = 198 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 108/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A S Sbjct: 10 QLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS Sbjct: 70 LGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PSMAVVKGDSR 128 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F Sbjct: 129 VPEISAASILAKVTRDAEMAALDIVFPQYGFVQHKGYPTAFHLEKLAEHGATEHHRRSFG 188 Query: 203 PLRN 206 P++ Sbjct: 189 PVKR 192 >gi|261338819|ref|ZP_05966677.1| hypothetical protein ENTCAN_05014 [Enterobacter cancerogenus ATCC 35316] gi|288318642|gb|EFC57580.1| ribonuclease HII [Enterobacter cancerogenus ATCC 35316] Length = 198 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIQEKALAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L++ P LIDG P + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLKITPEYVLIDGNRCPALP-VPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRD M YP YGF H GYPTA H + + E G + HR +F P Sbjct: 130 PEISAASIIAKVTRDAEMAALDLTYPLYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|258406140|ref|YP_003198882.1| Ribonuclease H [Desulfohalobium retbaense DSM 5692] gi|257798367|gb|ACV69304.1| Ribonuclease H [Desulfohalobium retbaense DSM 5692] Length = 197 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 76/181 (41%), Positives = 102/181 (56%), Gaps = 2/181 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DE GRG LAGPVV AA+IL G+ DSK++S K+RE L I A ++ Sbjct: 6 RVAGVDEAGRGCLAGPVVAAAVILPKTWDLPGMTDSKQLSAKRREVLAGAIKEQALYWAL 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ID NI ++T A+ A+E L +P IDG P +++ GDS Sbjct: 66 GVVWPPVIDTINILQSTKRAMLTAIERLGHVPDMVYIDGN-QPVPTSLPQKSIVGGDSSE 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 IAAASI+AK RDR+M ++YP YGF H GY T H + ++ GPS +HRLTF+ Sbjct: 125 PCIAAASIVAKTFRDRVMVSLERRYPGYGFARHKGYGTRAHLEALRRLGPSRMHRLTFKG 184 Query: 204 L 204 + Sbjct: 185 V 185 >gi|199599536|ref|ZP_03212924.1| Ribonuclease HII [Lactobacillus rhamnosus HN001] gi|258508404|ref|YP_003171155.1| ribonuclease HII [Lactobacillus rhamnosus GG] gi|199589577|gb|EDY97695.1| Ribonuclease HII [Lactobacillus rhamnosus HN001] gi|257148331|emb|CAR87304.1| Ribonuclease HII [Lactobacillus rhamnosus GG] gi|259649719|dbj|BAI41881.1| ribonuclease HII [Lactobacillus rhamnosus GG] Length = 252 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 81/194 (41%), Positives = 117/194 (60%), Gaps = 5/194 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + + VAG+DEVGRG LAGPVV AA+IL + + +NDSK+++ +R+ LY Sbjct: 58 RYERKLWKM-YSHVAGLDEVGRGPLAGPVVTAAVILP-HQFKWPVNDSKQLTAHERDVLY 115 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI + I A + ID+ NI+ AT A+ AV +L+V P L+D ++ + Sbjct: 116 PHILTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVD--AMHVPVNL 173 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKV RDRLM + + YP Y F ++GY T H + Sbjct: 174 PQERLIKGDANSISIAAASIVAKVIRDRLMVMYDRVYPGYDFKDNMGYGTKAHLAGLATH 233 Query: 192 GPSCIHRLTFRPLR 205 G + IHR +F P+R Sbjct: 234 GVTPIHRRSFGPVR 247 >gi|300727476|ref|ZP_07060867.1| ribonuclease HII [Prevotella bryantii B14] gi|299775179|gb|EFI71780.1| ribonuclease HII [Prevotella bryantii B14] Length = 203 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 105/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S KKR L E+I A+ +I Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPADYNNPELNDSKQLSLKKRYALREQIQKDAVAWAIGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + IDK NI A+ A++ A+E LQV P++ +IDG ++KGDS S Sbjct: 73 VTPEEIDKINILHASFLAMHRAIEQLQVKPQALIIDGNHFDPYKDLPYTTIVKGDSKYQS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M+ ++YP Y + S+ GYPT KH+ I+E G S HR ++ Sbjct: 133 IAAASILAKTYRDDYMKALAEEYPYYDWASNKGYPTKKHRLGIREHGVSPYHRKSY 188 >gi|168210661|ref|ZP_02636286.1| ribonuclease HII [Clostridium perfringens B str. ATCC 3626] gi|170711299|gb|EDT23481.1| ribonuclease HII [Clostridium perfringens B str. ATCC 3626] Length = 272 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 89/190 (46%), Positives = 111/190 (58%), Gaps = 7/190 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 SIS + ID+ I A E L + P L DG I + + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLSIKPDLVLSDGYLIK-NFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNLS 208 ++F L+N+ Sbjct: 265 MSF--LKNIL 272 >gi|168207943|ref|ZP_02633948.1| ribonuclease HII [Clostridium perfringens E str. JGS1987] gi|170660752|gb|EDT13435.1| ribonuclease HII [Clostridium perfringens E str. JGS1987] Length = 272 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 89/190 (46%), Positives = 111/190 (58%), Gaps = 7/190 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 SIS + ID+ I A E L + P L DG I + + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLSIKPDLVLSDGYLIK-NFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNLS 208 ++F L+N+ Sbjct: 265 MSF--LKNIL 272 >gi|110800212|ref|YP_696393.1| ribonuclease HII [Clostridium perfringens ATCC 13124] gi|123049754|sp|Q0TPP7|RNH2_CLOP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|110674859|gb|ABG83846.1| ribonuclease HII [Clostridium perfringens ATCC 13124] Length = 272 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 89/190 (46%), Positives = 111/190 (58%), Gaps = 7/190 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 SIS + ID+ I A E L + P L DG I + + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNHVFIKACEGLSIKPDLVLSDGYLIK-NFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNLS 208 ++F L+N+ Sbjct: 265 MSF--LKNIL 272 >gi|320540045|ref|ZP_08039701.1| putative ribonuclease HII, degrades RNA of DNA-RNA hybrids [Serratia symbiotica str. Tucson] gi|320029894|gb|EFW11917.1| putative ribonuclease HII, degrades RNA of DNA-RNA hybrids [Serratia symbiotica str. Tucson] Length = 197 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LYE+I + A S+ Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPAQPIVGLADSKKLSEKRRLALYEEIIAKALSWSL 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI AT+ A+ AV L ++P LIDG P ++ AV+KGDS Sbjct: 72 GRAEPEEIDRLNILHATMLAMQRAVAGLPIVPDMVLIDGNRCPTLPM-RSQAVVKGDSRV 130 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDR M + +P YGF H GYPTA H + + G + HR +F P Sbjct: 131 AEISAASILAKVTRDREMIELDRVFPGYGFAQHKGYPTAFHLEQLAVLGATEHHRRSFAP 190 Query: 204 LRN 206 +R Sbjct: 191 VRR 193 >gi|320334228|ref|YP_004170939.1| Ribonuclease H [Deinococcus maricopensis DSM 21211] gi|319755517|gb|ADV67274.1| Ribonuclease H [Deinococcus maricopensis DSM 21211] Length = 210 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 70/198 (35%), Positives = 103/198 (52%), Gaps = 3/198 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F LE + + VAG+DE GRGA AGP+ VAA+IL DSK +S +RE Sbjct: 3 PDFSLERQHWARGFFRVAGVDEAGRGAWAGPLTVAAVILPATPTDLPFRDSKTLSAAQRE 62 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L ++ A+ ++ A ID+ N+ AT A A+ L+V P++ + D + D Sbjct: 63 ALAAEVRRVAVAWAVEFAEADEIDRLNVLGATHAAALRALRRLEVAPQALITDYLRLRTD 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 A + D++S S+AAAS++AK RDR M +P YGF +H GY + H+ + Sbjct: 123 --LPLLAPPRADALSYSVAAASLLAKTERDRRMVELDALHPGYGFAAHKGYGVSAHRAAL 180 Query: 189 KEKGPSCIHRLTFRPLRN 206 G S HR +F P+ Sbjct: 181 DRLGVSDEHRRSFGPVAR 198 >gi|307129834|ref|YP_003881850.1| ribonuclease HII [Dickeya dadantii 3937] gi|306527363|gb|ADM97293.1| ribonuclease HII [Dickeya dadantii 3937] Length = 198 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DEVGRG L G VV AA+ILDPN G+ DSK +S K+R LY++I A S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPNRPIAGLADSKTLSEKRRLALYDEIREKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID NI AT+ A+ AV L + P LIDG P + AV+KGDS Sbjct: 73 RAEPEEIDSLNILHATMLAMQRAVAGLPITPDFVLIDGNRCPSLPM-PSQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M + +++P+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMEVLDQQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAPV 191 Query: 205 RN 206 + Sbjct: 192 KR 193 >gi|169827106|ref|YP_001697264.1| ribonuclease HII [Lysinibacillus sphaericus C3-41] gi|168991594|gb|ACA39134.1| Ribonuclease HII [Lysinibacillus sphaericus C3-41] Length = 253 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 78/185 (42%), Positives = 112/185 (60%), Gaps = 4/185 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DE GRG LAGPVV AA+IL N+ G+NDSK++S KR I AI Sbjct: 69 LIAGVDEAGRGPLAGPVVTAAVILPTNSEALVGLNDSKQLSKDKRNAFAALIKKHAISYF 128 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S Q ID+ NI++AT ++ +VE+L P L+D ++ + ++IKGD+ Sbjct: 129 IHFQSAQQIDELNIYEATKQSMKASVESLSRKPDYVLVD--AMTLPMAIPQDSIIKGDAK 186 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SL+IAAASI+AK RD M K +P YGF H GY T +H + ++E GP+ HR +F Sbjct: 187 SLAIAAASILAKTARDDYMEQLDKDFPMYGFAQHAGYGTKQHLKALEEYGPTIHHRKSFE 246 Query: 203 PLRNL 207 P++++ Sbjct: 247 PIKSM 251 >gi|325269676|ref|ZP_08136289.1| ribonuclease HII [Prevotella multiformis DSM 16608] gi|324988044|gb|EGC20014.1| ribonuclease HII [Prevotella multiformis DSM 16608] Length = 200 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 101/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL P ++DSKK++ KR L E I A ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPGYRNCELDDSKKLTPGKRYALRETIEHDALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ A++ L+V P + ++DG ++KGD LS Sbjct: 73 VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y + ++GYPT KH+Q I+E G + HR ++ Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRKSY 188 >gi|295110185|emb|CBL24138.1| Ribonuclease HII [Ruminococcus obeum A2-162] Length = 251 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 119/195 (61%), Gaps = 6/195 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + GIDEVGRG LAGPVV A+IL ++ +NDSKK++ KREELY Sbjct: 60 QYEHKYEHLGY--LCGIDEVGRGPLAGPVVACAVILPADHQILYLNDSKKLTAHKREELY 117 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ + I ID+ NI +AT +A+ A+ L+V P+ L D +IP + Sbjct: 118 DVILREAVAVGIGMVGPAKIDEINILQATYEAMRQAISKLKVTPQLLLNDAVTIP-GVEV 176 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S SIAAASI+AKVTRDRLM K P YGF S+ GY + +H + +K+ Sbjct: 177 PQVPIIKGDAKSASIAAASIVAKVTRDRLMVEYDKTLPGYGFASNKGYGSTEHIEALKKF 236 Query: 192 GPSCIHRLTFRPLRN 206 GP+ IHR+TF ++N Sbjct: 237 GPTPIHRVTF--IKN 249 >gi|256383963|gb|ACU78533.1| ribonuclease HII [Mycoplasma mycoides subsp. capri str. GM12] gi|256384795|gb|ACU79364.1| ribonuclease HII [Mycoplasma mycoides subsp. capri str. GM12] gi|296455877|gb|ADH22112.1| ribonuclease HII [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 207 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 72/191 (37%), Positives = 114/191 (59%), Gaps = 1/191 (0%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + N+ ++G DE GRG LAGP+VVA++IL + I DSKK++ K R+ L+++I + Sbjct: 13 LDHNITYLSGSDEAGRGCLAGPLVVASVILKADYFNPLIKDSKKLNPKTRQLLFDEIIKN 72 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 I S + +D+ N +A+L + NL++ P LIDG + ++I Sbjct: 73 CLDYQIIVISSKQVDELNPLQASLLGFKTTISNLKITPDLGLIDGNQNINLENIKTLSII 132 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD S SIA +SI+AKVTRD+++ + YP+YGF SH GY T +H I++ G IH Sbjct: 133 KGDDKSFSIACSSILAKVTRDKILDQYDQIYPNYGFKSHKGYCTKQHLLAIQKYGILDIH 192 Query: 198 RLTFRPLRNLS 208 R +++P++ +S Sbjct: 193 RKSYKPIKKIS 203 >gi|239617249|ref|YP_002940571.1| Ribonuclease H [Kosmotoga olearia TBF 19.5.1] gi|239506080|gb|ACR79567.1| Ribonuclease H [Kosmotoga olearia TBF 19.5.1] Length = 227 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 5/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + + M EK +AG+DE GRG LAGPVV AA+IL G+ DSK ++ K REEL Sbjct: 10 LDFDRMYIEK-FGVIAGLDEAGRGPLAGPVVAAAVILGEK--IEGLFDSKALTEKVREEL 66 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++KI A + I +S ID NI +AT A+ A++ L + P +IDG+ + + Sbjct: 67 FDKIIKKAKVGIGLSSPDEIDTFNIFEATKLAMNRAIKKLPIQPDYVIIDGKHLKLNNRG 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++ GD S SIAAASI+AKV RDRLM+ YP+Y +D + GY TA+H + +K Sbjct: 127 E--CIVSGDQKSASIAAASIVAKVFRDRLMKALAVLYPEYSWDKNKGYGTAEHLKALKIY 184 Query: 192 GPSCIHRLTFRPLRNLS 208 GP+ HRLTF P++ L Sbjct: 185 GPTLWHRLTFSPVKALL 201 >gi|332188926|ref|ZP_08390627.1| ribonuclease HII family protein [Sphingomonas sp. S17] gi|332011037|gb|EGI53141.1| ribonuclease HII family protein [Sphingomonas sp. S17] Length = 198 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 73/183 (39%), Positives = 110/183 (60%), Gaps = 3/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 P+ G+DE GRG LAGPVV AA+IL + P GINDSKK++ K R L +I S AI+ + Sbjct: 9 PLCGVDEAGRGPLAGPVVAAAVILPERDCPSGINDSKKLTEKTRARLCAEIRSCAIVGVG 68 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + ID+ NI+ AT+ A+ AV+ + + ++ + A A++ GD+ Sbjct: 69 VVEPEEIDRLNIYWATMKAMTLAVDAVVAGLGRAPAHVLVDGNRLPKWGYTATAIVGGDA 128 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SL+I AASI+AK RD +M A + +P YG+ S+ GY +A H ++E GP+ +HR +F Sbjct: 129 KSLAIGAASIVAKHVRDEMMIAAAEDWPAYGWHSNKGYGSATHLAALREHGPTPLHRRSF 188 Query: 202 RPL 204 P+ Sbjct: 189 APV 191 >gi|297569140|ref|YP_003690484.1| ribonuclease H [Desulfurivibrio alkaliphilus AHT2] gi|296925055|gb|ADH85865.1| Ribonuclease H [Desulfurivibrio alkaliphilus AHT2] Length = 218 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 106/196 (54%), Gaps = 3/196 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E + + VAGIDE GRG LAGPVV A ++L DSK++ + R Sbjct: 15 SLAFERSLESQGYRLVAGIDEAGRGPLAGPVVAACVVLPAGCEASRFRDSKQLKPELRCR 74 Query: 71 LYEKIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I + + ID+ NI +A+L A+ AV L P L+DG Sbjct: 75 LAAEIEALPGVYWGVGVVAPAEIDRLNILQASLLAMQKAVAALAAEPDFLLVDG-KHQLP 133 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LP A+++GDS S SIAAASIIAKV RD +M H++YP Y F H GY TA+H ++ Sbjct: 134 LPLPQQALVRGDSRSASIAAASIIAKVRRDEIMADYHRRYPQYNFHRHKGYGTAEHLHLL 193 Query: 189 KEKGPSCIHRLTFRPL 204 ++ GP IHR +F+P+ Sbjct: 194 RQHGPCPIHRRSFKPV 209 >gi|120599538|ref|YP_964112.1| ribonuclease HII [Shewanella sp. W3-18-1] gi|146292465|ref|YP_001182889.1| ribonuclease HII [Shewanella putrefaciens CN-32] gi|166226653|sp|A4Y557|RNH2_SHEPC RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226655|sp|A1RLL3|RNH2_SHESW RecName: Full=Ribonuclease HII; Short=RNase HII gi|120559631|gb|ABM25558.1| RNase HII [Shewanella sp. W3-18-1] gi|145564155|gb|ABP75090.1| RNase HII [Shewanella putrefaciens CN-32] Length = 209 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 87/190 (45%), Positives = 113/190 (59%), Gaps = 5/190 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A Sbjct: 18 GLIAGVDEVGRGPLVGDVVTAAVILDPNQPISGLNDSKKLSEKRREALFDEICEKALCYH 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP----CQAFAVIK 138 I AS ID+ NI AT+ A+ AV L + P+ L+DG P + ++IK Sbjct: 78 IGRASPAEIDELNILHATMLAMQRAVAGLNLAPKLVLVDGNRSPFFSHNSQSIVSHSIIK 137 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + SI+AASIIAKVTRDR M YP YGF H GYPT H + I E G +R Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYR 197 Query: 199 LTFRPLRNLS 208 +F+P++ L Sbjct: 198 KSFKPVKALL 207 >gi|323341686|ref|ZP_08081919.1| ribonuclease HII [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464111|gb|EFY09304.1| ribonuclease HII [Erysipelothrix rhusiopathiae ATCC 19414] Length = 204 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 3/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E E+ V GIDE GRG +AGP VV+ +I INDSK++S K+R+EL Sbjct: 7 EFEVNYWEQG-KLVVGIDEAGRGPMAGPCVVSGVIFPKGYYDARINDSKQLSEKQRDELV 65 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I S+A+ + + I + + ++ +D+ Sbjct: 66 SNIESNALWTFTEIIPVDIIDRDNIYRATQNAMKKIAIESKADI--VLTDAMPLDDIAIP 123 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGD+ SLSIAAASI+AK RD LM++ ++P+YGF H GY T +H++ I + G Sbjct: 124 VEAIVKGDARSLSIAAASILAKTVRDGLMKVYDLEFPEYGFAKHKGYGTKQHKEAILKFG 183 Query: 193 PSCIHRLTFR 202 IHR +FR Sbjct: 184 RCPIHRKSFR 193 >gi|251790731|ref|YP_003005452.1| ribonuclease HII [Dickeya zeae Ech1591] gi|247539352|gb|ACT07973.1| Ribonuclease H [Dickeya zeae Ech1591] Length = 198 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 84/184 (45%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDPN G+ DSK +S K+R LY++I A S Sbjct: 11 RCIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKTLSEKRRLALYDEIREKALAWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID NI AT+ A+ AV L V P LIDG P + AV+KGDS Sbjct: 71 LGRAEPEEIDTLNILHATMLAMQRAVAALPVTPDFVLIDGNRCPALPM-PSQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M + +++P+YGF H GYPTA H + + G + HR +F Sbjct: 130 VAEISAASILAKVTRDREMEVLDRQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFA 189 Query: 203 PLRN 206 P++ Sbjct: 190 PVKR 193 >gi|116512136|ref|YP_809352.1| ribonuclease HII [Lactococcus lactis subsp. cremoris SK11] gi|123025377|sp|Q02YP2|RNH2_LACLS RecName: Full=Ribonuclease HII; Short=RNase HII gi|116107790|gb|ABJ72930.1| RNase HII [Lactococcus lactis subsp. cremoris SK11] Length = 258 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E + + + +AGIDEVGRGALAGPVV AA+IL N G+NDSKK+ K + Sbjct: 59 LEFEKELYSQEIELIAGIDEVGRGALAGPVVTAAVILPKNCKIRGLNDSKKVPKSKHHAI 118 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A I I + ID+ NI++AT A+ AV L + P LID ++ DLP Sbjct: 119 LSEIQEKALAIGIGIVDAEKIDEVNIYEATKIAMIQAVSKLSLKPEHLLID--AMVLDLP 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD+ S SIAAASI+AKVTRD +M+ ++P+Y F+ + GY TAKH + + Sbjct: 177 IAQTKIIHGDARSASIAAASIVAKVTRDEMMKDFALEFPEYDFEHNAGYGTAKHLAALTK 236 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR ++ P++++ Sbjct: 237 YGITRIHRKSYEPIKSM 253 >gi|88812391|ref|ZP_01127641.1| Ribonuclease H [Nitrococcus mobilis Nb-231] gi|88790398|gb|EAR21515.1| Ribonuclease H [Nitrococcus mobilis Nb-231] Length = 218 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 84/201 (41%), Positives = 115/201 (57%), Gaps = 8/201 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 RP + AGIDE GRG LAGPV+ AA+IL P GI DSK++S +R Sbjct: 2 RPTLDF-----PAPAAWTAGIDEAGRGPLAGPVLAAAVILPPA-PIAGIADSKRLSAARR 55 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EL I + A+ +I A + ID+ NI +A+L A+ AV L P AL+DGR P Sbjct: 56 SELATIIRNRAVGWAIGRAEVEEIDRLNILQASLLAMQRAVAVLTPKPSLALVDGRDKPR 115 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 C+ A++ GD+ L+I AASI+AKV RD M + ++YP YG H GY T +H Sbjct: 116 LP-CRVEAIVGGDASVLAIGAASILAKVARDAEMIMLEQRYPGYGLARHKGYGTREHLAA 174 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 ++ GP+ IHR +F+P+R L Sbjct: 175 LRRLGPAPIHRRSFKPVRTLL 195 >gi|295098672|emb|CBK87762.1| RNase HII [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 198 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALFDEIKEKALAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID NI AT+ A+ AV L+++P LIDG P + AV+KGDS Sbjct: 71 GRAEPDEIDDLNILHATMLAMQRAVAGLKIVPEYVLIDGNRCPALPM-PSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKVTRD M YP YGF H GYPTA H + + E G + HR +F P Sbjct: 130 AEISAASIIAKVTRDAEMAALDLTYPAYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|152999991|ref|YP_001365672.1| ribonuclease HII [Shewanella baltica OS185] gi|166226651|sp|A6WLC0|RNH2_SHEB8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|151364609|gb|ABS07609.1| Ribonuclease H [Shewanella baltica OS185] Length = 210 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 87/200 (43%), Positives = 118/200 (59%), Gaps = 6/200 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + + +AG+DEVGRG L G VV AA+ILDP+ G+NDSKK+S K+RE L+++ Sbjct: 9 EADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPSKPISGLNDSKKLSEKRREALFDE 68 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ- 132 I A + AS ID+ NI AT+ A+ AV L + P L+DG P + Sbjct: 69 ICDKALCYQVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128 Query: 133 ----AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++IKGD + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I Sbjct: 129 AELTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYPTKAHFEAI 188 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 E G +R +F+P++ L Sbjct: 189 AEHGVFDQYRKSFKPVKALL 208 >gi|217967913|ref|YP_002353419.1| Ribonuclease H [Dictyoglomus turgidum DSM 6724] gi|217337012|gb|ACK42805.1| Ribonuclease H [Dictyoglomus turgidum DSM 6724] Length = 203 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 83/191 (43%), Positives = 113/191 (59%), Gaps = 3/191 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + +AG+DE GRGALAGPV A+IL P + +NDSK +S K+REEL+ Sbjct: 13 ERERELWY-YFRYIAGVDEAGRGALAGPVYAGAVILPPLSSIP-VNDSKLLSPKEREELF 70 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I A S A+ + I++ I KATL A+ A+E L++ P L+DG ++ Sbjct: 71 EIIKKEALCWSFGYATVEEIEELGILKATLLAMRRAIEKLEIKPEYLLVDGNIPIPNMDI 130 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD LSIA+ASI+AKV RDR M+ K+YP YGF H GY T +H++ IK Sbjct: 131 PQETIVKGDRKCLSIASASIVAKVLRDRYMKELDKEYPGYGFSRHKGYATKEHREKIKSL 190 Query: 192 GPSCIHRLTFR 202 G IHR F+ Sbjct: 191 GSLLIHRKGFK 201 >gi|317493174|ref|ZP_07951597.1| ribonuclease HII [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918834|gb|EFV40170.1| ribonuclease HII [Enterobacteriaceae bacterium 9_2_54FAA] Length = 207 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LYE+I A S Sbjct: 21 QFIAGVDEVGRGPLVGAVVTAAVILDPARPIIGLADSKKLSEKRRNALYEEIVEKALSWS 80 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI AT+ A+ AV L V P LIDG P+ AV+KGDS Sbjct: 81 LGRAEPHEIDELNILHATMLAMQRAVAGLSVEPDYVLIDGNRCPKLPMASQ-AVVKGDSR 139 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M + ++P+YGF H GYPTA H + + + G + HR +F Sbjct: 140 VAEISAASILAKVTRDREMEVLDAQFPEYGFAQHKGYPTAFHLERLAQLGATVHHRRSFG 199 Query: 203 PLRN 206 P++ Sbjct: 200 PVKR 203 >gi|260596603|ref|YP_003209174.1| ribonuclease HII [Cronobacter turicensis z3032] gi|260215780|emb|CBA28205.1| Ribonuclease HII [Cronobacter turicensis z3032] Length = 198 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP N G+ DSKK+S K+R L+++I AI S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPLNPIVGLADSKKLSEKRRLALFDEIKEKAIAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L V P LIDG P + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLIDGNRCPALPM-PSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAP 189 Query: 204 LRN 206 +R Sbjct: 190 VRR 192 >gi|188996137|ref|YP_001930388.1| Ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1] gi|229564299|sp|B2V752|RNH2_SULSY RecName: Full=Ribonuclease HII; Short=RNase HII gi|188931204|gb|ACD65834.1| Ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1] Length = 197 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 111/188 (59%), Gaps = 3/188 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + + + GIDE GRG LAGP+V+A++I + PF DSK +S K+RE L+EK Sbjct: 5 EKELFSQGYEKIVGIDEAGRGPLAGPLVIASVIFPKHQKPFIHTDSKGLSEKEREYLFEK 64 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A I+I+ + IDK I A + + +++L+ AL+D + D Sbjct: 65 IHDYAEEINITIVENTEIDKFGISNAAKIYMENNLKSLKSKWDIALVDFVKL--DESINH 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD IS +IAAASIIAKV RDR+M +KYP++ FD H GY T +H Q IK+ G Sbjct: 123 LPLIKGDEISHTIAAASIIAKVVRDRIMIEYKEKYPNFSFDKHKGYATKQHYQEIKKFGI 182 Query: 194 SCIHRLTF 201 + IHR +F Sbjct: 183 TPIHRRSF 190 >gi|15606955|ref|NP_214337.1| RNase HII [Aquifex aeolicus VF5] gi|7227919|sp|O67768|RNH2_AQUAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|2984206|gb|AAC07736.1| RNase HII [Aquifex aeolicus VF5] Length = 196 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 80/196 (40%), Positives = 114/196 (58%), Gaps = 5/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + EK + VAG+DE GRG LAGPVV AA+IL P PF DSKK++ K+REE Sbjct: 2 LNYELELWEKGL-LVAGVDEAGRGPLAGPVVAAAVILPPFTEPFIKGDSKKLTKKEREEA 60 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE+I + A + + ID+ NI +AT A+ A+++L+ + D + + Sbjct: 61 YEEIKNKALAVGTAVVDSAVIDRVNILRATKLAMKRALKDLKYHYDIVITDYVKLEGENC 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 KGD SL+ A ASIIAKV RD++M I HK YPD+ F S+ GYP+ H + +++ Sbjct: 121 MPLV---KGDEKSLNCACASIIAKVIRDKIMEIYHKIYPDFNFASNKGYPSKTHLEKVEK 177 Query: 191 KGPSCIHRLTFRPLRN 206 + IHR +F PL+ Sbjct: 178 GEYTEIHRKSFSPLKK 193 >gi|242373537|ref|ZP_04819111.1| ribonuclease HII [Staphylococcus epidermidis M23864:W1] gi|242348900|gb|EES40502.1| ribonuclease HII [Staphylococcus epidermidis M23864:W1] Length = 256 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 113/197 (57%), Gaps = 4/197 (2%) Query: 13 ELEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + + + GIDEVGRG LAGPVV A+IL+ ++ G+NDSKK+ K+R L Sbjct: 60 QYENNILNHDSNALICGIDEVGRGPLAGPVVACAVILNKDHHYLGLNDSKKVPAKQRVAL 119 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + + + AS + ID+ NI++AT A+ A+ L P LID + D Sbjct: 120 NNDLKAGVLSYAYGIASSEEIDELNIYRATQVAMQRAIAQLDEQPTHLLIDAMKLDND-- 177 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD+ S+SIAAASI+AK RD M+ +PDYGF+ +VGY T +H + I Sbjct: 178 IPQTSIIKGDAKSVSIAAASIMAKEYRDDYMKALANHFPDYGFEKNVGYGTKQHLEAIDT 237 Query: 191 KGPSCIHRLTFRPLRNL 207 G HR +F P+++L Sbjct: 238 YGVINEHRKSFEPIKSL 254 >gi|212692764|ref|ZP_03300892.1| hypothetical protein BACDOR_02262 [Bacteroides dorei DSM 17855] gi|237724942|ref|ZP_04555423.1| ribonuclease HII [Bacteroides sp. D4] gi|212664700|gb|EEB25272.1| hypothetical protein BACDOR_02262 [Bacteroides dorei DSM 17855] gi|229436680|gb|EEO46757.1| ribonuclease HII [Bacteroides dorei 5_1_36/D4] Length = 201 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E + A ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEREALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ AV+ L++ P+ LIDG + V+KGD LS Sbjct: 73 VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M HK+YP Y ++S+ GYPT KH+ I+E G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREYGTTPYHRMTF 188 >gi|329888215|ref|ZP_08266813.1| ribonuclease HII family protein [Brevundimonas diminuta ATCC 11568] gi|328846771|gb|EGF96333.1| ribonuclease HII family protein [Brevundimonas diminuta ATCC 11568] Length = 199 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 88/196 (44%), Positives = 113/196 (57%), Gaps = 2/196 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE R V G+DE GRG AGPV AA+IL+P+++P GI+DSK ++ K+R L Sbjct: 2 LELEARATWNGHVCGVDEAGRGPWAGPVSAAAVILNPDDLPPGIDDSKALTEKRRAALEP 61 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I S A + AS + ID+ NI AT A+ AVE L P AL+DG + C Sbjct: 62 LIKSRALAWGVGFASVEEIDELNILHATGLAMRRAVEALAHAPVHALVDGNYRFKLP-CA 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 V+KGDS SLSIAAASI+AK RDRLM YP YGF SH GY HQ+ ++ G Sbjct: 121 VTPVVKGDSRSLSIAAASILAKTARDRLMIEMDATYPGYGFASHKGYNAPIHQKALQTLG 180 Query: 193 PSCIHRLTFRPLRNLS 208 P HR ++ P++ L Sbjct: 181 PCPEHRRSWAPIKALL 196 >gi|109897588|ref|YP_660843.1| ribonuclease H [Pseudoalteromonas atlantica T6c] gi|123171510|sp|Q15WE9|RNH2_PSEA6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|109699869|gb|ABG39789.1| RNase HII [Pseudoalteromonas atlantica T6c] Length = 197 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 3/187 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKKIS KKR L++ I +A + Sbjct: 3 QLIAGVDEVGRGPLVGDVVTAAVILDPAKPIAGLADSKKISEKKRLALFDIIMQNALAVC 62 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS Q ID+ NI AT+ A+ AV+ L P +DG P + + AV+KGDS+ Sbjct: 63 VGRASPQEIDELNILHATMLAMKRAVQGLATQPTFVRVDGNRCP-NWDYASEAVVKGDSL 121 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASIIAKVTRD M H +P+YGF H GYPT H + + E GP +R++F+ Sbjct: 122 FAEISAASIIAKVTRDAEMSELHNAHPEYGFAQHKGYPTKAHLEKLAELGPLSQYRMSFK 181 Query: 203 PLRNLSV 209 P++ LS+ Sbjct: 182 PVQ-LSL 187 >gi|294661258|ref|YP_003573134.1| hypothetical protein Aasi_1724 [Candidatus Amoebophilus asiaticus 5a2] gi|227336409|gb|ACP21006.1| hypothetical protein Aasi_1724 [Candidatus Amoebophilus asiaticus 5a2] Length = 196 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 77/184 (41%), Positives = 103/184 (55%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG DEVGRG LAGPVV AA+IL F + DSKK++ K+R E+ I A + Sbjct: 7 QLVAGCDEVGRGCLAGPVVAAAVILPLQYYYFLLKDSKKLTPKQRIEIAAIIKKEAIDWA 66 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I A+ + ID+ NI AT A++ A+ L V P LIDG + ++KGD Sbjct: 67 IGCATPEEIDQVNISNATHLAMHRAINKLIVKPELLLIDGNKFLPYPNIEHECIVKGDKK 126 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASII KV RD M+ ++ P Y ++ ++GYPT +H Q I E G S HR +F Sbjct: 127 VNSIAAASIIDKVYRDEYMQELAEREPGYNWEINMGYPTKEHYQAIYELGMSFHHRKSFS 186 Query: 203 PLRN 206 + Sbjct: 187 LVAK 190 >gi|293394717|ref|ZP_06639009.1| ribonuclease HII [Serratia odorifera DSM 4582] gi|291422843|gb|EFE96080.1| ribonuclease HII [Serratia odorifera DSM 4582] Length = 202 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 84/184 (45%), Positives = 109/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S Sbjct: 11 QCIAGVDEVGRGPLVGAVVTAAVILDPARPIVGLADSKKLSEKRRLALYDEIIDKAQAWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID NI AT+ A+ AV L + P LIDG P+ ++ AV+KGDS Sbjct: 71 LGRAEPAEIDSLNILHATMLAMQRAVAGLAITPDLVLIDGNRCPKLPM-RSQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +P YGF H GYPTA H + + + G + HR +F Sbjct: 130 VAEISAASILAKVTRDREMAELDLSFPAYGFAQHKGYPTAFHLEKLAQYGATQHHRRSFA 189 Query: 203 PLRN 206 P+R Sbjct: 190 PVRR 193 >gi|265754659|ref|ZP_06089711.1| ribonuclease HII [Bacteroides sp. 3_1_33FAA] gi|263234773|gb|EEZ20341.1| ribonuclease HII [Bacteroides sp. 3_1_33FAA] Length = 201 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E + A ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYALREIVEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ AV+ L++ P+ LIDG + V+KGD LS Sbjct: 73 VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M HK+YP Y ++S+ GYPT KH+ I+E G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREHGTTPYHRMTF 188 >gi|303258069|ref|ZP_07344077.1| ribonuclease HII [Burkholderiales bacterium 1_1_47] gi|330998718|ref|ZP_08322447.1| ribonuclease HII [Parasutterella excrementihominis YIT 11859] gi|302859088|gb|EFL82171.1| ribonuclease HII [Burkholderiales bacterium 1_1_47] gi|329576457|gb|EGG57969.1| ribonuclease HII [Parasutterella excrementihominis YIT 11859] Length = 213 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 116/182 (63%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 V G+DE GRG LAGPVV AA+IL+P++ G+ DSKK++ RE L E+I + A + Sbjct: 14 TLVCGVDEAGRGPLAGPVVAAAVILNPDHPIEGLRDSKKLTAHAREVLAEQIKTHALAWA 73 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ +S ID+ NI +AT+ A+ AV L P L+DG +PE +A ++KGD + Sbjct: 74 IAESSVADIDRMNILQATMAAMRKAVLQLDPKPDLVLVDGNRLPELPF-RAEPIVKGDDL 132 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AK RD LM+I YP YGF+ H GY TA H +++++ GP +HR+TF Sbjct: 133 IPEISAASILAKTYRDALMKILGGMYPKYGFEQHAGYGTAHHLKMLEKWGPCPVHRMTFG 192 Query: 203 PL 204 P+ Sbjct: 193 PV 194 >gi|302344581|ref|YP_003809110.1| ribonuclease H [Desulfarculus baarsii DSM 2075] gi|301641194|gb|ADK86516.1| Ribonuclease H [Desulfarculus baarsii DSM 2075] Length = 217 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 76/196 (38%), Positives = 116/196 (59%), Gaps = 2/196 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E ++ + +AG DE GRG LAGPVV AA++L + G++DSK++S +RE L E+ Sbjct: 18 EMLLWRRGCRLLAGADEAGRGPLAGPVVAAAVMLRADWPDPGVDDSKRLSAARREFLAER 77 Query: 75 ITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A +++ ID+ NIH A+L A+ AVE L+ P L+DGR + Sbjct: 78 IKADAAGWAVAVVEADEIDRLNIHNASLLAMSRAVEQLRPRPDFLLVDGRFVTPL-DLPQ 136 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 AV+ GD+ IAAASI+AKV RD LM H+++P Y F ++ GYPT +H++ + GP Sbjct: 137 KAVVGGDASCRCIAAASILAKVWRDGLMARLHERWPQYNFAANKGYPTPQHKEALARFGP 196 Query: 194 SCIHRLTFRPLRNLSV 209 IHR ++ + + + Sbjct: 197 CPIHRRSYADVAQMPL 212 >gi|121608424|ref|YP_996231.1| ribonuclease HII [Verminephrobacter eiseniae EF01-2] gi|189043674|sp|A1WHV6|RNH2_VEREI RecName: Full=Ribonuclease HII; Short=RNase HII gi|121553064|gb|ABM57213.1| Ribonuclease H [Verminephrobacter eiseniae EF01-2] Length = 209 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPV+ AA++LD G+ DSKK++ +R L+++I + A S Sbjct: 20 GLVAGVDEAGRGPLAGPVMAAAVMLDERQPIMGLADSKKLTPARRASLFDEIRAKALCYS 79 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS Q ID NI +ATL A+ AV+ L++ P L+DG +P A A++KGD++ Sbjct: 80 IAQASVQEIDALNILQATLLAMRRAVQGLRLRPALVLVDGNRLPRLD-IPAQAIVKGDAL 138 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RD H ++P YGF H GY TA H ++ G HR +F Sbjct: 139 QPAISAASILAKVQRDHWCVQVHAEFPQYGFAGHKGYGTAMHLAALRAHGACIHHRRSFA 198 Query: 203 PLRN 206 P+ Sbjct: 199 PVAR 202 >gi|294789420|ref|ZP_06754657.1| ribonuclease HII [Simonsiella muelleri ATCC 29453] gi|294482633|gb|EFG30323.1| ribonuclease HII [Simonsiella muelleri ATCC 29453] Length = 201 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 81/183 (44%), Positives = 105/183 (57%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL + + DSKK+S KKR++L E I + AI SI+S Sbjct: 11 AGVDEAGRGPLVGSVFAAAVILPAHYDLPDLTDSKKLSEKKRDKLAELIKNQAIAWSIAS 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS I ++NI AT+ A+ AV L P IDG +P +L A AV+KGDS Sbjct: 71 ASPAEIVQYNILYATMLAMKRAVLGLNQKPEKVWIDGNRVPPELGIDAQAVVKGDSKIAQ 130 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M YP YGF+ H GY TA H +++ G HR F P++ Sbjct: 131 ISAASILAKTARDAEMYALATLYPQYGFEKHKGYGTAAHLAALRQYGVLPEHRADFSPVK 190 Query: 206 NLS 208 L Sbjct: 191 ALL 193 >gi|269138107|ref|YP_003294807.1| ribonuclease HII [Edwardsiella tarda EIB202] gi|267983767|gb|ACY83596.1| ribonuclease HII [Edwardsiella tarda EIB202] gi|304558151|gb|ADM40815.1| Ribonuclease HII [Edwardsiella tarda FL6-60] Length = 197 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S Sbjct: 11 ERIAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRCALYDEIVEKALCWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI +AT+ A+ AV L + P LIDG P A AV+KGDS Sbjct: 71 LGRAEAEEIDRLNILQATMVAMQRAVAGLALPPDFVLIDGNRCPALPMA-AQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP+YGF H GYPTA H + + G + HR +F Sbjct: 130 VAEISAASILAKVTRDREMAELDRQYPEYGFAQHKGYPTALHLERLAALGATEHHRRSFG 189 Query: 203 PLRN 206 P++ Sbjct: 190 PVKR 193 >gi|283835245|ref|ZP_06354986.1| ribonuclease HII [Citrobacter youngae ATCC 29220] gi|291068956|gb|EFE07065.1| ribonuclease HII [Citrobacter youngae ATCC 29220] Length = 198 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 107/183 (58%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIKEKALSWSV 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPALP-VPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAALDTVFPQYGFAQHKGYPTAFHLEKLALHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|187251038|ref|YP_001875520.1| ribonuclease H [Elusimicrobium minutum Pei191] gi|186971198|gb|ACC98183.1| Ribonuclease H [Elusimicrobium minutum Pei191] Length = 210 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 86/200 (43%), Positives = 113/200 (56%), Gaps = 4/200 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREE 70 + + +KN + GIDE GRG LAGPVV A+ +NDSKK++ KRE+ Sbjct: 6 RFDCEILQKNSCALIGIDEAGRGPLAGPVVACAVCAPKEIYHLFEDVNDSKKLTDVKREK 65 Query: 71 LYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENL-QVIPRSALIDGRSIPED 128 +Y +I + AS + ID+ NI +AT A+ A + + AL+DG +D Sbjct: 66 IYARINGYKIAYGVGFASAKEIDEINILQATFLAMRRACQKFLDINEALALVDGNHKIKD 125 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 VI GD+ S SIA AS+IAKV RDR MR AH+ YP YGFD H GY + KH I Sbjct: 126 FLLPQQTVIDGDAKSFSIAMASVIAKVHRDRYMRKAHELYPVYGFDGHKGYGSGKHIAAI 185 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 KE GP HR+TF PL+NL+ Sbjct: 186 KEHGPCKEHRMTFAPLKNLN 205 >gi|238918789|ref|YP_002932303.1| ribonuclease HII [Edwardsiella ictaluri 93-146] gi|259494064|sp|C5B7S2|RNH2_EDWI9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238868357|gb|ACR68068.1| ribonuclease HII [Edwardsiella ictaluri 93-146] Length = 197 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S Sbjct: 11 GRIAGVDEVGRGPLVGAVVTAAVILDPARPIAGLADSKKLSEKRRNALYDEIVEKALCWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI +AT+ A+ AV L P LIDG P A AV+KGDS Sbjct: 71 LGRAEAEEIDRLNILQATMVAMQRAVAGLARQPDFVLIDGNRCPALPMA-AQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP+YGF H GYPTA H + + G + HR +F Sbjct: 130 VAEISAASILAKVTRDREMAALDRQYPEYGFARHKGYPTALHLERLAALGATEHHRRSFG 189 Query: 203 PLRN 206 P++ Sbjct: 190 PVKR 193 >gi|114776989|ref|ZP_01452009.1| ribonuclease HII [Mariprofundus ferrooxydans PV-1] gi|114552510|gb|EAU54970.1| ribonuclease HII [Mariprofundus ferrooxydans PV-1] Length = 185 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 113/184 (61%), Gaps = 3/184 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAI-ISIS 84 AG+DEVGRG LAGPVV AA+IL P++ G DSKK++ KKR +LY I A+ +++ Sbjct: 3 AGVDEVGRGPLAGPVVTAAVILSPDDPYLGQYRDSKKVAEKKRLKLYHHIRKHAVAYTVT 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ + ID NI AT+ ++ +VE L V P ++DG IP DL A A+I GD + Sbjct: 63 MATVEEIDHLNILHATMLSMRRSVEGLAVRPVRVVVDGNRIP-DLTMPAEAIIGGDDLVQ 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASIIAKV RDRLM + ++P Y F H GY T H ++E GP HR +F P+ Sbjct: 122 EIAAASIIAKVVRDRLMAMLDVRHPGYQFTKHKGYGTKVHMDALREHGPCPAHRRSFAPV 181 Query: 205 RNLS 208 L Sbjct: 182 TKLL 185 >gi|163750365|ref|ZP_02157605.1| ribonuclease HII [Shewanella benthica KT99] gi|161329855|gb|EDQ00841.1| ribonuclease HII [Shewanella benthica KT99] Length = 218 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 8/188 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DEVGRG L G VV AA+ILDP N G+NDSKK++ KKRE L+ +I A IS+ Sbjct: 21 AGVDEVGRGPLVGNVVTAAVILDPKNPILGLNDSKKLTEKKREALFTEIHEKALSISVGH 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-------CQAFAVIK 138 A+ + ID+ NI AT+ A+ AV L++ P L+DG P +A A++K Sbjct: 81 ATPEEIDELNILHATMLAMQRAVAGLEIKPVKVLVDGNRAPIFHHGDNTELALEAHAIVK 140 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + I+AASI+AKV RDR M++ ++P YGF H GYPT H Q +++ G HR Sbjct: 141 GDGLIAGISAASIVAKVIRDREMKLLDMEHPQYGFAKHKGYPTQAHFQALEQHGVLAEHR 200 Query: 199 LTFRPLRN 206 +FRP+R+ Sbjct: 201 KSFRPVRD 208 >gi|332994191|gb|AEF04246.1| ribonuclease HII [Alteromonas sp. SN2] Length = 191 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 85/187 (45%), Positives = 111/187 (59%), Gaps = 2/187 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DEVGRG L G VV AA+ILDP N G+ DSKK+S KKR L +I + A Sbjct: 2 HKLIAGVDEVGRGPLVGDVVTAAVILDPANPIVGLTDSKKLSEKKRIALAAEIKAKALYW 61 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I A+ + ID NI AT+ A+ AVE L V P +DG +P D P A AV+KGDS Sbjct: 62 HIGRATPEEIDTLNILHATMLAMKRAVEGLAVTPDFVRVDGNRLP-DWPYAAEAVVKGDS 120 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + I+AASIIAKV RD M + +P+YGF H GYPT H + + G +R +F Sbjct: 121 LYAEISAASIIAKVERDNDMLALDELHPEYGFAGHKGYPTKAHFEALATHGVIDGYRKSF 180 Query: 202 RPLRNLS 208 +P++ L Sbjct: 181 KPVKALL 187 >gi|291278613|ref|YP_003495448.1| ribonuclease HII [Deferribacter desulfuricans SSM1] gi|290753315|dbj|BAI79692.1| ribonuclease HII [Deferribacter desulfuricans SSM1] Length = 187 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 77/176 (43%), Positives = 105/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 G+DEVGRG AGP+VV+A+IL P+ I DSKKIS K+RE+L + I A S++ Sbjct: 7 VGLDEVGRGCFAGPLVVSAVILPPDFKDERIIDSKKISEKQREKLAQYIKDIALDYSVAV 66 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ++ IDK NI +AT A++ A+ L ID + C+ V KG+S + Sbjct: 67 VCNKVIDKINILQATKQAMHIAISRLNNQYSFIAIDAVKLKNFYGCKINPVNKGESKFQN 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASIIAKV RD LM+ H KYP+Y + + GY T +H + IK+ G +HR TF Sbjct: 127 IAAASIIAKVYRDNLMKKLHLKYPEYNWYKNKGYGTKEHIEAIKKYGICELHRKTF 182 >gi|313114085|ref|ZP_07799637.1| ribonuclease HII [Faecalibacterium cf. prausnitzii KLE1255] gi|310623494|gb|EFQ06897.1| ribonuclease HII [Faecalibacterium cf. prausnitzii KLE1255] Length = 215 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 87/193 (45%), Positives = 115/193 (59%), Gaps = 2/193 (1%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +E +A VR + AG+DE GRG L GPV VAA ILDP N FGINDSKK++ KKRE Sbjct: 12 PLYEYDAAVRSQ-YGCFAGVDEAGRGPLCGPVCVAACILDPENPVFGINDSKKLTEKKRE 70 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+++I A I + ID+ NI AT+ + AVE L ++P L+DG P Sbjct: 71 ALFDEIIEKALAYKIVFVGPEIIDRDNILNATMGGMKQAVEELDIVPNLVLVDGNRTPAG 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L A V+KGD+ S SI AAS++AKV+RDR M ++YP Y H GYPT H ++I Sbjct: 131 LLVPAQPVVKGDATSASIGAASVLAKVSRDRYMLELDRQYPQYQLAKHKGYPTKLHYELI 190 Query: 189 KEKGPSCIHRLTF 201 + G +R +F Sbjct: 191 AQYGIQPFYRRSF 203 >gi|114705285|ref|ZP_01438193.1| ribonuclease HII protein [Fulvimarina pelagi HTCC2506] gi|114540070|gb|EAU43190.1| ribonuclease HII protein [Fulvimarina pelagi HTCC2506] Length = 245 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 99/205 (48%), Positives = 135/205 (65%), Gaps = 3/205 (1%) Query: 4 NSIPERP--HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDS 60 ++ P RP F E + E +AG+DEVGRG LAGPVV AA+I +P IP GINDS Sbjct: 11 SAAPPRPTPDFSREHALLEAGAEWIAGVDEVGRGPLAGPVVAAAVIFENPRRIPVGINDS 70 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K+++ K RE+L+ I ++A ++I+S S + ID +I +ATL A+ A+ L + P AL Sbjct: 71 KQLTAKAREQLFADILANAHVAIASVSAKEIDAIDIRQATLTAMTKALAQLVIRPCHALF 130 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGR +P A++KGDSIS+SIAAASI+AKV RDR+M+ A YP YGF ++VGY Sbjct: 131 DGRDVPPAWTANGTAIVKGDSISVSIAAASIVAKVQRDRMMQHACGLYPGYGFTTNVGYG 190 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLR 205 A H I GP+ IHR++F+PLR Sbjct: 191 CAAHLAAIAALGPTPIHRMSFKPLR 215 >gi|254556724|ref|YP_003063141.1| ribonuclease HII [Lactobacillus plantarum JDM1] gi|254045651|gb|ACT62444.1| ribonuclease HII [Lactobacillus plantarum JDM1] Length = 255 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 H LE VAGIDEVGRG LAGPVV AA++LD + +NDSK+++ KKR Sbjct: 57 HMRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAA 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I A+ + I A Q ID+ NI++AT A+ AV NL V P L+D ++ + Sbjct: 117 LMPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVD--AMQVPV 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + +IKGD+ S SI+AASI+AKV RD LM + + YP Y F ++GY TAKH + Sbjct: 175 PIEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLA 234 Query: 190 EKGPSCIHRLTFRPLRN 206 G + IHR +F P+RN Sbjct: 235 SLGATPIHRQSFSPVRN 251 >gi|237756157|ref|ZP_04584727.1| ribonuclease HII [Sulfurihydrogenibium yellowstonense SS-5] gi|237691683|gb|EEP60721.1| ribonuclease HII [Sulfurihydrogenibium yellowstonense SS-5] Length = 197 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 79/188 (42%), Positives = 112/188 (59%), Gaps = 3/188 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + + + GIDE GRG LAGP+V+A++I + PF +DSK +S K+RE L+EK Sbjct: 5 EKELFSQGYEKIVGIDEAGRGPLAGPLVIASVIFPKHQKPFIHSDSKGLSEKEREYLFEK 64 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A I+I+ + IDK I A + + +++L+ AL+D + D Sbjct: 65 IHDYAEEINITIIENTEIDKLGISNAAKIYMENNLKSLKSKWDIALVDFVKL--DESINH 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +IKGD IS +IAAASIIAKV RDR+M +KYP++ FD H GY T +H Q IK+ G Sbjct: 123 LPLIKGDEISHTIAAASIIAKVVRDRIMIEYKEKYPNFSFDKHKGYATKQHYQEIKKFGI 182 Query: 194 SCIHRLTF 201 + IHR +F Sbjct: 183 TPIHRRSF 190 >gi|319425767|gb|ADV53841.1| Ribonuclease H [Shewanella putrefaciens 200] Length = 209 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 87/190 (45%), Positives = 113/190 (59%), Gaps = 5/190 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A Sbjct: 18 GLIAGVDEVGRGPLVGDVVTAAVILDPNQSISGLNDSKKLSEKRREALFDEICEKALCYH 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP----CQAFAVIK 138 I AS ID+ NI AT+ A+ AV L + P+ L+DG P + ++IK Sbjct: 78 IGRASPAEIDELNILHATMLAMQRAVAGLNLAPKLVLVDGNRSPVFSHNSQSIVSHSIIK 137 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + SI+AASIIAKVTRDR M YP YGF H GYPT H + I E G +R Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAVYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYR 197 Query: 199 LTFRPLRNLS 208 +F+P++ L Sbjct: 198 KSFKPVKALL 207 >gi|28378510|ref|NP_785402.1| ribonuclease HII [Lactobacillus plantarum WCFS1] gi|38258518|sp|Q88W20|RNH2_LACPL RecName: Full=Ribonuclease HII; Short=RNase HII gi|28271346|emb|CAD64251.1| ribonuclease HII [Lactobacillus plantarum WCFS1] Length = 255 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 H LE VAGIDEVGRG LAGPVV AA++LD + +NDSK+++ KKR Sbjct: 57 HMRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAA 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I A+ + I A Q ID+ NI++AT A+ AV NL V P L+D ++ + Sbjct: 117 LMPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVD--AMQVPV 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + +IKGD+ S SI+AASI+AKV RD LM + + YP Y F ++GY TAKH + Sbjct: 175 PIEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLA 234 Query: 190 EKGPSCIHRLTFRPLRN 206 G + IHR +F P+RN Sbjct: 235 SLGATPIHRQSFSPVRN 251 >gi|312130977|ref|YP_003998317.1| rnase hii [Leadbetterella byssophila DSM 17132] gi|311907523|gb|ADQ17964.1| RNase HII [Leadbetterella byssophila DSM 17132] Length = 192 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 76/177 (42%), Positives = 112/177 (63%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAGPVV AA+IL P +NDSK++S + R +L +I + A+ ++ Sbjct: 13 AGVDEAGRGCLAGPVVAAAVILPPGYENEWLNDSKQLSKEDRNQLRTEIENIAVAFAVGQ 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ASH+ IDK NI +A+ A++ A+E L P LIDG ++KGD+ ++ Sbjct: 73 ASHEEIDKINILQASFLAMHRAIEQLSTRPDHLLIDGNRFSPYPLIPHTCIVKGDAKFMN 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD +M I ++YP Y ++++ GYPT H++ I+E G + HR+TFR Sbjct: 133 IAAASILAKTYRDEIMEILSQEYPQYKWEANAGYPTIFHRKAIQEHGFTPYHRMTFR 189 >gi|161504651|ref|YP_001571763.1| ribonuclease HII [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189043654|sp|A9MPH8|RNH2_SALAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|160865998|gb|ABX22621.1| hypothetical protein SARI_02772 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 198 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 108/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLALYDEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPALP-VPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + + G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAALDIIFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|114797072|ref|YP_761434.1| ribonuclease HII [Hyphomonas neptunium ATCC 15444] gi|123128500|sp|Q0BYK9|RNH2_HYPNA RecName: Full=Ribonuclease HII; Short=RNase HII gi|114737246|gb|ABI75371.1| ribonuclease HIII [Hyphomonas neptunium ATCC 15444] Length = 207 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 79/201 (39%), Positives = 102/201 (50%), Gaps = 15/201 (7%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 + G+DE GRG AGPV AA+ILDP G+ DSKK+S K R+ L I A Sbjct: 4 FPLIIGVDEAGRGPWAGPVTAAAVILDPAQPIEGLTDSKKLSEKARDRLAPLIRERALAW 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL--------------IDGRSIPE 127 ++ AS + ID NI +AT A+ A+ + IDG ++P Sbjct: 64 CVAEASVEEIDTLNIRQATFLAMRRAILGQSRTDQDRSGQFETVSATAGLILIDGNALPG 123 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DLP A A+IKGD +I+AASI+AK RD M YP YGF H GY TA H Sbjct: 124 DLPAPARAIIKGDLTEPAISAASILAKTHRDAQMASLCNLYPGYGFSGHKGYGTAAHAAA 183 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 + GP +HR +F P+R L Sbjct: 184 LTRLGPCPVHRQSFAPVRALL 204 >gi|255037595|ref|YP_003088216.1| Ribonuclease H [Dyadobacter fermentans DSM 18053] gi|254950351|gb|ACT95051.1| Ribonuclease H [Dyadobacter fermentans DSM 18053] Length = 208 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 113/181 (62%), Gaps = 1/181 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DEVGRG LAGPVV AA+IL + +NDSK+++ +R EL ++I + +++ Sbjct: 13 AGLDEVGRGCLAGPVVAAAVILPRDYKHSFLNDSKQLTKAQRLELEKEIIRESVCWAVAE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI KA+ A++ AV+ L+V P L+DG +IKGD+ LS Sbjct: 73 VDNLEIDRINILKASFLAMHRAVDKLRVRPEHLLVDGNRFTPYPMIPHTCIIKGDAHYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAAS++AK RD LM +++P YG++ +VGYPT H++ I GP HR+TF+ ++ Sbjct: 133 IAAASVLAKNYRDELMSNLSRQFPHYGWEQNVGYPTIHHRKAIVLHGPCSYHRMTFKLIK 192 Query: 206 N 206 + Sbjct: 193 S 193 >gi|168216993|ref|ZP_02642618.1| ribonuclease HII [Clostridium perfringens NCTC 8239] gi|182380928|gb|EDT78407.1| ribonuclease HII [Clostridium perfringens NCTC 8239] Length = 272 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 90/190 (47%), Positives = 112/190 (58%), Gaps = 7/190 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 SIS + ID+ I D A E L + P L DG I + + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNDVFIKACEGLSIKPDLVLSDGYLIK-NFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNLS 208 ++F L+N+ Sbjct: 265 MSF--LKNIL 272 >gi|57234417|ref|YP_181512.1| ribonuclease HII [Dehalococcoides ethenogenes 195] gi|97182406|sp|Q3Z8D7|RNH2_DEHE1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|57224865|gb|AAW39922.1| ribonuclease HII [Dehalococcoides ethenogenes 195] Length = 211 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 80/202 (39%), Positives = 109/202 (53%), Gaps = 5/202 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHK 66 P + E + ++ +AG+DE GRG LAGPVV A+I+ P + + DSK ++ + Sbjct: 7 PGWAEEKHLWKQGFSSIAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVAMVRDSKVLTPE 66 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE LY I S AI + + ID I AT A+ AVE+L L+ Sbjct: 67 KREYLYCHIVSMAISFGVGVVDNTQIDCLGIAPATRLAMKQAVEHLD-CRPDFLLVDYLK 125 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 D+P ++ GD++ SIA ASIIAKV+RDRLM YP Y H GY TA H Sbjct: 126 LPDIPLPQKGIVDGDALCFSIACASIIAKVSRDRLMCELEATYPGYHLAKHKGYGTALHM 185 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + I +KG S IHR TF PL+++ Sbjct: 186 ECISQKGISPIHRRTFAPLKSM 207 >gi|300767456|ref|ZP_07077368.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180667|ref|YP_003924795.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495275|gb|EFK30431.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046158|gb|ADN98701.1| ribonuclease HII [Lactobacillus plantarum subsp. plantarum ST-III] Length = 255 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 H LE VAGIDEVGRG LAGPVV AA++LD + +NDSK+++ KKR Sbjct: 57 HMRLERDFWAHGGQYVAGIDEVGRGPLAGPVVTAAVVLDDHFDLLEVNDSKQLTAKKRAA 116 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I A+ + I A Q ID+ NI++AT A+ AV NL V P L+D ++ + Sbjct: 117 LMPRILEEAVAVGIGVADAQQIDQLNIYEATRVAMAQAVRNLSVRPTRLLVD--AMQVPV 174 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + +IKGD+ S SI+AASI+AKV RD LM + + YP Y F ++GY TAKH + Sbjct: 175 PIEQTRLIKGDAKSASISAASIVAKVVRDHLMTMYDQVYPGYDFADNMGYGTAKHLAGLA 234 Query: 190 EKGPSCIHRLTFRPLRN 206 G + IHR +F P+RN Sbjct: 235 SLGATPIHRQSFSPVRN 251 >gi|163814002|ref|ZP_02205395.1| hypothetical protein COPEUT_00154 [Coprococcus eutactus ATCC 27759] gi|158450696|gb|EDP27691.1| hypothetical protein COPEUT_00154 [Coprococcus eutactus ATCC 27759] Length = 255 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 83/191 (43%), Positives = 111/191 (58%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE E + + GIDEVGRG LAGPVV AA+IL +NDSK+IS +KRE L Sbjct: 63 FEYERKYSDNEF--ICGIDEVGRGPLAGPVVAAAVILPKECDILYLNDSKQISAQKRELL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y++I A+ + + A+ ID NI A +A+ A+ L V L++ + Sbjct: 121 YDEIMEKAVAVGVGMANQDVIDDINILNADYEAMKQAISKLSV-RPQLLLNDAVNIPGVD 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD++S SIAAASIIAKVTRDRLM YP YGF ++GY TA+H + ++ Sbjct: 180 IPQVGIIKGDTLSASIAAASIIAKVTRDRLMVEYDSIYPGYGFARNMGYGTAEHIKALET 239 Query: 191 KGPSCIHRLTF 201 GP IHR +F Sbjct: 240 IGPCAIHRRSF 250 >gi|237729489|ref|ZP_04559970.1| ribonuclease HII [Citrobacter sp. 30_2] gi|226909218|gb|EEH95136.1| ribonuclease HII [Citrobacter sp. 30_2] Length = 198 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L+++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIIGLNDSKKLSEKRRLALFDEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI +AT+ A+ AV L + P LIDG P P + AV+KGDS Sbjct: 71 GRAEPHEIDELNILQATMLAMQRAVAGLHIAPEYVLIDGNRCPAL-PVPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAALDTVFPQYGFAQHKGYPTAFHLEKLALHGATEHHRRSFGP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|237709459|ref|ZP_04539940.1| ribonuclease HII [Bacteroides sp. 9_1_42FAA] gi|229456515|gb|EEO62236.1| ribonuclease HII [Bacteroides sp. 9_1_42FAA] Length = 201 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E + A ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPVDFKNELLNDSKQLTEHQRYVLREIVEREALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ AV+ L++ P+ LIDG + V+KGD LS Sbjct: 73 VTPEEIDEINILNASFLAMHRAVDQLKIRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M HK+YP Y ++S+ GYPT KH+ I+E G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNGLHKEYPFYDWNSNKGYPTKKHRAAIREYGTTPYHRMTF 188 >gi|89365772|dbj|BAE86854.1| RNase HII [Shewanella sp. SIB1] Length = 212 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+R LY++I +A +S Sbjct: 22 GLVAGVDEVGRGPLIGDVVTAAVILDPNKPIVGLNDSKKLSEKRRNALYQQIMDNALSVS 81 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS ID+ NI AT+ A+ AV L ++P L+DG +P D + A+IKGD + Sbjct: 82 VGRASPAEIDELNILHATMLAMQRAVAGLSILPERVLVDGNRVP-DFGIASHAIIKGDGL 140 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASIIAKVTRD M + +YP YGF H GYPT H + + G HR +F+ Sbjct: 141 VAAISAASIIAKVTRDAEMDMLDSQYPQYGFAKHKGYPTKAHFEALALYGVLPEHRKSFK 200 Query: 203 PL 204 P+ Sbjct: 201 PV 202 >gi|60679832|ref|YP_209976.1| ribonuclease HII [Bacteroides fragilis NCTC 9343] gi|253564368|ref|ZP_04841825.1| ribonuclease HII [Bacteroides sp. 3_2_5] gi|265764964|ref|ZP_06093239.1| ribonuclease HII [Bacteroides sp. 2_1_16] gi|81317095|sp|Q5LIL2|RNH2_BACFN RecName: Full=Ribonuclease HII; Short=RNase HII gi|60491266|emb|CAH06014.1| putative ribonuclease HII [Bacteroides fragilis NCTC 9343] gi|251948144|gb|EES88426.1| ribonuclease HII [Bacteroides sp. 3_2_5] gi|263254348|gb|EEZ25782.1| ribonuclease HII [Bacteroides sp. 2_1_16] gi|301161352|emb|CBW20892.1| putative ribonuclease HII [Bacteroides fragilis 638R] Length = 201 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIERDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L+ P+ LIDG + VIKGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDRLKTRPQHLLIDGNRFKKYPDIPHTTVIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H+++P Y ++ + GYPT KH+ I G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNKLHQEFPCYDWEHNKGYPTKKHRAAIAGHGTTPYHRMTF 188 >gi|298480557|ref|ZP_06998754.1| ribonuclease HII [Bacteroides sp. D22] gi|295086253|emb|CBK67776.1| RNase HII [Bacteroides xylanisolvens XB1A] gi|298273378|gb|EFI14942.1| ribonuclease HII [Bacteroides sp. D22] Length = 200 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTF 188 >gi|288800584|ref|ZP_06406042.1| ribonuclease HII [Prevotella sp. oral taxon 299 str. F0039] gi|288332797|gb|EFC71277.1| ribonuclease HII [Prevotella sp. oral taxon 299 str. F0039] Length = 214 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL N +NDSK+++ K+R L + I AI ++ Sbjct: 26 AGCDEAGRGCLAGSVYAAAVILPQNYSHPYLNDSKQLTEKRRMILRKDIEKDAIAWAVGV 85 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI KA+ A++ A++ L+V P + +IDG ++KGDS LS Sbjct: 86 VSPEEIDEINILKASFLAMHRAIDQLKVRPEALIIDGNRFTPYQNLPYTPIVKGDSKYLS 145 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H +YP Y + + GYPT H++ IK+ G + HR++F Sbjct: 146 IAAASILAKTYRDEYMEELHSQYPQYEWSKNKGYPTVAHREAIKKYGTTPFHRMSF 201 >gi|189499018|ref|YP_001958488.1| ribonuclease HII [Chlorobium phaeobacteroides BS1] gi|189494459|gb|ACE03007.1| Ribonuclease H [Chlorobium phaeobacteroides BS1] Length = 207 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 87/201 (43%), Positives = 111/201 (55%), Gaps = 7/201 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKR 68 + E + V GIDE GRG LAGPVV AA++ P G +NDSK + K+R Sbjct: 7 DYEEKFWHE-HTCVCGIDEAGRGPLAGPVVAAAVMFPRYFKPEGVLTGLNDSKTLRPKQR 65 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L E I S+A SIS H ID NI AT+ A+ A E L+ +P LIDG Sbjct: 66 SALAEAIQSAAECFSISIIDHTTIDSVNIFNATMLAMNAAAEKLEQLPGLLLIDGNRFVP 125 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGD+ +SIAAASI+AK RDR+M H++YP+YGF H GYPT H Sbjct: 126 SLPIPYLTIVKGDTKVVSIAAASILAKTCRDRIMNEYHREYPEYGFAQHFGYPTQAHIAA 185 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 I G IHR +FR ++ L Sbjct: 186 IARYGRCPIHRTSFR-VKQLG 205 >gi|206900540|ref|YP_002251240.1| ribonuclease HII [Dictyoglomus thermophilum H-6-12] gi|206739643|gb|ACI18701.1| ribonuclease HII [Dictyoglomus thermophilum H-6-12] Length = 203 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 82/191 (42%), Positives = 114/191 (59%), Gaps = 3/191 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + +AG+DE GRGALAGPV A+IL P + +NDSK ++ ++REEL+ Sbjct: 13 ERERELWY-YFKYIAGVDEAGRGALAGPVYSGAVILPPFSSIP-VNDSKLLTPREREELF 70 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I + S A+ + I+K I +AT A+ AVE L++ P LIDG D+ Sbjct: 71 EIIKKESLCWSFGYATVEEIEKFGILQATFLAMKRAVEGLEIKPEYLLIDGNIPIPDIDI 130 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 V+KGD LSIA+ASI+AKV RD+ M+ K+YP+YGF H GY T +H++ IK+ Sbjct: 131 PQETVVKGDRRCLSIASASIVAKVLRDKYMKELDKEYPEYGFGKHKGYATKEHREKIKDL 190 Query: 192 GPSCIHRLTFR 202 G IHR F+ Sbjct: 191 GTLVIHRKGFK 201 >gi|229552204|ref|ZP_04440929.1| ribonuclease H [Lactobacillus rhamnosus LMS2-1] gi|258539618|ref|YP_003174117.1| ribonuclease HII [Lactobacillus rhamnosus Lc 705] gi|229314426|gb|EEN80399.1| ribonuclease H [Lactobacillus rhamnosus LMS2-1] gi|257151294|emb|CAR90266.1| Ribonuclease HII [Lactobacillus rhamnosus Lc 705] Length = 252 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 81/194 (41%), Positives = 116/194 (59%), Gaps = 5/194 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + VAG+DEVGRG LAGPVV AA+IL + + +NDSK+++ +R+ LY Sbjct: 58 RYERKLWTM-YSHVAGLDEVGRGPLAGPVVTAAVILP-HQFKWPVNDSKQLTAHERDVLY 115 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + AI + I A + ID+ NI+ AT A+ AV +L+V P L+D ++ + Sbjct: 116 PHILTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVD--AMHVPVNL 173 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +IKGD+ S+SIAAASI+AKV RDRLM + + YP Y F ++GY T H + Sbjct: 174 PQERLIKGDANSISIAAASIVAKVIRDRLMVMYDQVYPGYDFKDNMGYGTKAHLAGLAAH 233 Query: 192 GPSCIHRLTFRPLR 205 G + IHR +F P+R Sbjct: 234 GVTPIHRRSFGPVR 247 >gi|114570742|ref|YP_757422.1| RNase HII [Maricaulis maris MCS10] gi|122315504|sp|Q0AMK3|RNH2_MARMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|114341204|gb|ABI66484.1| RNase HII [Maricaulis maris MCS10] Length = 218 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 88/201 (43%), Positives = 122/201 (60%), Gaps = 1/201 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +IP++ + L N +AG+DE GRG L+GPVV AA+ILDP G+ DSK +S Sbjct: 4 TIPQKDNQSL-NKAGMGNTVRIAGVDEAGRGPLSGPVVAAAVILDPTRPITGLGDSKALS 62 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 ++R EL+ I ++A + I A ID+ NI AT+ A+ AV L V P L+DG Sbjct: 63 ERRRRELFRLIRANAWVGIGIAEPAEIDRLNILHATMAAMRRAVARLPVRPTLVLVDGNR 122 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LPC A A+IKGD+ I AASIIAK RD LM A +++P YGF+ H GYP+A H Sbjct: 123 LPPGLPCPAEAIIKGDAKEACIGAASIIAKTVRDDLMEQAARRFPGYGFEGHKGYPSAAH 182 Query: 185 QQVIKEKGPSCIHRLTFRPLR 205 + ++ G IHR ++ P+R Sbjct: 183 KAALETSGACPIHRRSYAPVR 203 >gi|156935301|ref|YP_001439217.1| ribonuclease HII [Cronobacter sakazakii ATCC BAA-894] gi|166225185|sp|A7MI15|RNH2_ENTS8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|156533555|gb|ABU78381.1| hypothetical protein ESA_03158 [Cronobacter sakazakii ATCC BAA-894] Length = 198 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 108/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R L+++I AI S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPLKPIVGLADSKKLSEKRRLALFDEIKEKAIAWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L V P L+DG P + AV+KGDS Sbjct: 71 GRAEPHEIDELNILHATMLAMQRAVAGLAVTPEYVLVDGNRCPALPM-PSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAELDLTFPQYGFAQHKGYPTAFHLERLAEHGATAHHRRSFAP 189 Query: 204 LRN 206 +R Sbjct: 190 VRR 192 >gi|170727606|ref|YP_001761632.1| ribonuclease HII [Shewanella woodyi ATCC 51908] gi|238688705|sp|B1KNS9|RNH2_SHEWM RecName: Full=Ribonuclease HII; Short=RNase HII gi|169812953|gb|ACA87537.1| Ribonuclease H [Shewanella woodyi ATCC 51908] Length = 213 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 87/187 (46%), Positives = 115/187 (61%), Gaps = 8/187 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DEVGRG L G VV AA+ILDPNN G+NDSKK++ KKRE L+ +I A I++ Sbjct: 21 AGVDEVGRGPLVGNVVTAAVILDPNNPITGLNDSKKLTEKKRELLFAEIHEKALCINVGH 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP-------CQAFAVIK 138 A+ ID+ NI AT+ A+ AV L + P S L+DG P +A AV+K Sbjct: 81 ATPDEIDELNILHATMLAMQRAVAGLDIKPLSVLVDGNRTPAFYHGEETEDRIEAHAVVK 140 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + +I+AASIIAKV RDR M + +YP YGF H GYPT H + ++ G HR Sbjct: 141 GDGLISAISAASIIAKVIRDREMDLLDMEYPQYGFAKHKGYPTKAHFEALELHGVLPEHR 200 Query: 199 LTFRPLR 205 +FRP++ Sbjct: 201 KSFRPVK 207 >gi|313623979|gb|EFR94078.1| ribonuclease HII [Listeria innocua FSL J1-023] Length = 261 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 119/194 (61%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK+++ KR+ L+ Sbjct: 60 RYETDLFKQGFQYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLNEAKRDMLF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I AI I I H ID+ NI++AT A+ A+ L P LID ++P Sbjct: 120 EVIKKEAISIGIGIIDHDIIDQVNIYEATKIAMREALVKLNPAPDFVLID--AMPLKYSE 177 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASIIAKVTRDR+M+ + YP Y F +++GY T KH + Sbjct: 178 AELSLIKGDTKSISIAAASIIAKVTRDRMMQQYDELYPGYDFANNMGYGTKKHLNGLDTI 237 Query: 192 GPSCIHRLTFRPLR 205 G IHRL+F P++ Sbjct: 238 GICPIHRLSFSPVK 251 >gi|91792925|ref|YP_562576.1| ribonuclease H [Shewanella denitrificans OS217] gi|123356872|sp|Q12NX3|RNH2_SHEDO RecName: Full=Ribonuclease HII; Short=RNase HII gi|91714927|gb|ABE54853.1| Ribonuclease H [Shewanella denitrificans OS217] Length = 214 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 4/185 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDPN G+ DSKK+S K+ + LY +I A +S Sbjct: 24 GLVAGVDEVGRGPLIGDVVTAAVILDPNRPIAGLMDSKKLSEKRLQALYLEIMDKALAVS 83 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS---IPEDLPCQAFAVIKG 139 + A+ ID+ NI AT+ A+ AV L + P L+DG + + A+IKG Sbjct: 84 VGRANPSEIDELNILHATMLAMSRAVAGLNIKPERVLVDGNRLPEFALNAEVERHAIIKG 143 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + +I+AASIIAKVTRD M +YP+YGF H GYPT H + + + G HR Sbjct: 144 DGLVPAISAASIIAKVTRDEEMLQLDARYPEYGFAKHKGYPTKTHFEALAQFGVLPEHRK 203 Query: 200 TFRPL 204 +F+P+ Sbjct: 204 SFKPV 208 >gi|188994631|ref|YP_001928883.1| ribonuclease HII [Porphyromonas gingivalis ATCC 33277] gi|238691470|sp|B2RIU1|RNH2_PORG3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|188594311|dbj|BAG33286.1| putative ribonuclease HII [Porphyromonas gingivalis ATCC 33277] Length = 201 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 100/179 (55%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA+IL + +NDSK++S K+R L I S AI I Sbjct: 14 CGCDEAGRGCLAGPVYAAAVILPADFSHPLLNDSKQLSEKQRYTLRPVIESEAIGWGIGI 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S Q ID+ NI +A+ A++ A+E L P LIDG ++ GD+ S Sbjct: 74 VSPQEIDEINILRASFLAMHRAIEQLPFRPERLLIDGNRFDPFEQIPHHCIVGGDARYRS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M +K +P YG++ + GYP+ H+ I+ G S HRLTFR + Sbjct: 134 IAAASILAKTYRDDSMLRLNKDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFRGV 192 >gi|168215356|ref|ZP_02640981.1| ribonuclease HII [Clostridium perfringens CPE str. F4969] gi|170713265|gb|EDT25447.1| ribonuclease HII [Clostridium perfringens CPE str. F4969] Length = 272 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 90/190 (47%), Positives = 112/190 (58%), Gaps = 7/190 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 SIS + ID+ I D A E L + P L DG I + + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNDVFIKACEGLSIKPDLVLSDGYLIK-NFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ HKKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKKYHKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNLS 208 ++F L+N+ Sbjct: 265 MSF--LKNIL 272 >gi|78485616|ref|YP_391541.1| ribonuclease H [Thiomicrospira crunogena XCL-2] gi|97189437|sp|Q31G56|RNH2_THICR RecName: Full=Ribonuclease HII; Short=RNase HII gi|78363902|gb|ABB41867.1| RNase HII [Thiomicrospira crunogena XCL-2] Length = 207 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 77/186 (41%), Positives = 112/186 (60%), Gaps = 3/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 + G+DEVGRG L G VV AA+IL + DSKK+S KRE + +I A Sbjct: 18 EFIVGVDEVGRGPLVGDVVAAAVILPKG-CELLLKDSKKLSESKRELIAHQIQQEAIDFC 76 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I++AS ID NI AT+ A+ AVE L + L+DG P ++P + A++KGD Sbjct: 77 IATASPDEIDSLNILHATMLAMKRAVEGLNNPIKKVLVDGNRCP-NVPYECEAIVKGDGK 135 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD+ M++ H+ YP+YGFD+H GYPT H + + + G +R +F+ Sbjct: 136 VPVISAASILAKVHRDQQMQVLHEAYPEYGFDAHKGYPTKLHLEKLSQHGLIPGYRRSFK 195 Query: 203 PLRNLS 208 P++N+ Sbjct: 196 PVKNIL 201 >gi|225621120|ref|YP_002722378.1| ribonuclease HII [Brachyspira hyodysenteriae WA1] gi|225215940|gb|ACN84674.1| ribonuclease HII [Brachyspira hyodysenteriae WA1] Length = 226 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 88/217 (40%), Positives = 119/217 (54%), Gaps = 15/217 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII----------LDP 50 MF ++ ++ F E + GIDEVGRG L GPV VAA+I L Sbjct: 3 MFLDNKADK--FVYEKEYLSLGYKYICGIDEVGRGCLFGPVTVAAVIMPLELYNENELKK 60 Query: 51 NNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVE 109 NI I+DSKKIS KKREELY+KI A SI S + ID+ NI+ A A+ +AV Sbjct: 61 ENIVEEIDDSKKISAKKREELYDKIIDKALCYSIYSVDSKTIDEINIYNAVKLAMVNAVN 120 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 NL + P LID + D+ + ++ KGD+ S SI ASI+AKV RDR+M Y Sbjct: 121 NLNIKPDILLIDAVKL--DINIKQCSITKGDAKSYSIGCASIVAKVYRDRMMNELPDFYQ 178 Query: 170 DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 Y + GY T +H + I+ GPS +HR +F P+++ Sbjct: 179 KYKVSKNKGYGTKEHMKTIEMYGPSDMHRYSFEPIKS 215 >gi|53711581|ref|YP_097573.1| ribonuclease HII [Bacteroides fragilis YCH46] gi|81383847|sp|Q64ZN7|RNH2_BACFR RecName: Full=Ribonuclease HII; Short=RNase HII gi|52214446|dbj|BAD47039.1| ribonuclease HII [Bacteroides fragilis YCH46] Length = 201 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFENELLNDSKQLSEKQRYALREVIERDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L+ P+ LIDG + VIKGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDRLKTRPQHLLIDGNRFKKYPDIPHTTVIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H+++P Y ++ + GYPT KH+ I G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHQEFPCYDWEHNKGYPTKKHRAAIAGHGTTPYHRMTF 188 >gi|331009297|gb|EGH89353.1| ribonuclease HII [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 217 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 113/183 (61%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK++ +RE+LY +I A Sbjct: 12 DLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKKLTEARREKLYVEIQEKALCWF 71 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ A + ID+ NI AT+ A+ AVE L + P+ ALIDG P+ + V+KGDS Sbjct: 72 IARAEVEEIDQLNILHATMLAMKRAVEGLSITPKLALIDGNRCPQLS-VPSAPVVKGDSR 130 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAASI+AKV+RDR M YP YG H GYPT H + + GP+ IHR +F Sbjct: 131 VAAIAAASILAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFA 190 Query: 203 PLR 205 P+R Sbjct: 191 PVR 193 >gi|163791099|ref|ZP_02185519.1| ribonuclease HII [Carnobacterium sp. AT7] gi|159873655|gb|EDP67739.1| ribonuclease HII [Carnobacterium sp. AT7] Length = 257 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 90/196 (45%), Positives = 123/196 (62%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++E E+ +AGIDEVGRG LAGPVV AA++L + GINDSK++S KRE L Sbjct: 61 LQIERYFWEQGTQYIAGIDEVGRGPLAGPVVAAAVVLPKDFDVLGINDSKQLSSAKREAL 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+I +A+ I I H IDK NI++AT A+ A++ L V P LID ++ + Sbjct: 121 FEQIQEAAVAIGIGVKDHHIIDKVNIYEATKLAMIEAIQQLPVQPEQLLID--AMHLPVS 178 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + IKGD+ S+SIAAASIIAKVTRDR+M YP YGF + GY T H + +++ Sbjct: 179 IPQESFIKGDAKSISIAAASIIAKVTRDRMMADYDDLYPGYGFAKNAGYGTKVHLEGLEK 238 Query: 191 KGPSCIHRLTFRPLRN 206 +G IHR TF P++N Sbjct: 239 QGACPIHRKTFAPVKN 254 >gi|226939651|ref|YP_002794724.1| ribonuclease HII [Laribacter hongkongensis HLHK9] gi|259494068|sp|C1D4C1|RNH2_LARHH RecName: Full=Ribonuclease HII; Short=RNase HII gi|226714577|gb|ACO73715.1| Rnh2 [Laribacter hongkongensis HLHK9] Length = 198 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 106/185 (57%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 V G+DE GRG LAG V AA+ILDP G+ DSKK+S +RE L I A Sbjct: 3 RRVCGVDEAGRGPLAGGVYAAAVILDPARPVEGLADSKKLSAARREALAPLIRERALAWC 62 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-PCQAFAVIKGDS 141 ++ A+ + ID+ NI AT+ A+ AV+ L V P + +DG +P + A A++KGD+ Sbjct: 63 VAWATVEEIDRLNILHATMLAMCRAVDGLAVPPDAIEVDGNRVPPFVLDIPARAIVKGDA 122 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+AASI+AK RD +YP YGF +H GYPTA H I+ G +HR +F Sbjct: 123 TVAAISAASILAKTARDAECLELDARYPGYGFAAHKGYPTAAHVAAIERLGVLPVHRRSF 182 Query: 202 RPLRN 206 P++ Sbjct: 183 GPVKR 187 >gi|163796461|ref|ZP_02190421.1| Ribonuclease HII [alpha proteobacterium BAL199] gi|159178311|gb|EDP62855.1| Ribonuclease HII [alpha proteobacterium BAL199] Length = 222 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 75/212 (35%), Positives = 114/212 (53%), Gaps = 8/212 (3%) Query: 2 FCNSIPE-RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFG 56 F SIP+ RP +LE V G+DEVGRG AGPVV A +LD P ++ Sbjct: 3 FMPSIPKTRPTDDLERAAGALEGALVIGVDEVGRGPWAGPVVAGAAVLDLVAMPTHVAAL 62 Query: 57 INDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN---LQV 113 I DSK +S +R + T A I++ A + ID NI +A+L A+ AV+ Sbjct: 63 IADSKALSAPRRADALAAFTPYAAIALGRAEVEEIDAVNILQASLLAMRRAVDALLATLA 122 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 P + ++ + P + A++KGD+ LSI+ A+I AK+ RD M +++P YG+ Sbjct: 123 GPPALILVDGNRLPHWPHPSRAIVKGDASCLSISVAAIAAKLARDAEMAALAEQHPGYGW 182 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 + + GY T +HQ ++ GP+ HR +F P+R Sbjct: 183 ERNAGYGTPEHQVALRRLGPTIHHRRSFAPVR 214 >gi|149374423|ref|ZP_01892197.1| ribonuclease HII [Marinobacter algicola DG893] gi|149361126|gb|EDM49576.1| ribonuclease HII [Marinobacter algicola DG893] Length = 225 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 84/204 (41%), Positives = 117/204 (57%), Gaps = 8/204 (3%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 + P P E + +AG+DEVGRG L G VV AA+IL+P G+ DSKK Sbjct: 1 MSKRPLPP---FECQYQ---GRLLAGVDEVGRGPLVGAVVTAAVILNPERPIPGLADSKK 54 Query: 63 ISHKKREE-LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ K+RE + I +A S+ ID+ NI +AT+ A+ AV L V P L+D Sbjct: 55 LTDKRREALYEQIIERAASWSLGRCEADEIDRLNIFQATMVAMERAVAGLHVEPEYVLVD 114 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G P + V+KGDS +I+AASIIAKVTRDR M + H+++P+YGF SH GYPT Sbjct: 115 GNRCPR-WRWASEPVVKGDSRVEAISAASIIAKVTRDREMAVLHEEFPEYGFASHKGYPT 173 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLR 205 H + + G + HR +FRP++ Sbjct: 174 PVHLEALGRLGATAYHRRSFRPVQ 197 >gi|160891452|ref|ZP_02072455.1| hypothetical protein BACUNI_03903 [Bacteroides uniformis ATCC 8492] gi|156858859|gb|EDO52290.1| hypothetical protein BACUNI_03903 [Bacteroides uniformis ATCC 8492] Length = 202 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 77/176 (43%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L V P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HRLTF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTF 188 >gi|189459842|ref|ZP_03008627.1| hypothetical protein BACCOP_00472 [Bacteroides coprocola DSM 17136] gi|189433452|gb|EDV02437.1| hypothetical protein BACCOP_00472 [Bacteroides coprocola DSM 17136] Length = 200 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 101/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSKK++ +R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPSDYENQQLNDSKKLTEHQRYALREVIERDAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + Q IDK NI A+ A++ A++ L+V P+ LIDG + V+KGD LS Sbjct: 73 VTPQEIDKINILNASFLAMHRAIDQLKVRPQHLLIDGNRFNKYEDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y + + GYPT KH++ I G + HR+T+ Sbjct: 133 IAAASILAKTYRDDYMNRLAEEYPLYDWQKNKGYPTKKHREAIARYGTTPYHRMTY 188 >gi|271499509|ref|YP_003332534.1| Ribonuclease H [Dickeya dadantii Ech586] gi|270343064|gb|ACZ75829.1| Ribonuclease H [Dickeya dadantii Ech586] Length = 198 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 111/182 (60%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DEVGRG L G VV AA+ILDP+ G+ DSK +S K+R LY++I A S+ Sbjct: 13 IAGVDEVGRGPLVGAVVTAAVILDPSRPIVGLADSKTLSEKRRLALYDEIREKALAWSLG 72 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A + ID NI AT+ A+ AV L V P LIDG P + AV+KGDS Sbjct: 73 RAEPEEIDTLNILHATMLAMQRAVAALPVTPDFVLIDGNRCPALPM-PSQAVVKGDSRVA 131 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKVTRDR M + +++P+YGF H GYPTA H + + G + HR +F P+ Sbjct: 132 EISAASILAKVTRDREMEVLDQQFPEYGFAQHKGYPTAYHLEKLATLGATLHHRRSFAPV 191 Query: 205 RN 206 + Sbjct: 192 KR 193 >gi|18310688|ref|NP_562622.1| ribonuclease HII [Clostridium perfringens str. 13] gi|39932438|sp|Q8XJQ0|RNH2_CLOPE RecName: Full=Ribonuclease HII; Short=RNase HII gi|18145369|dbj|BAB81412.1| ribonuclease HII [Clostridium perfringens str. 13] Length = 272 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 88/190 (46%), Positives = 112/190 (58%), Gaps = 7/190 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGP+V AA+ILD ++I INDSKK+S KREEL E I A Sbjct: 86 YKYVAGVDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIKEKA 145 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 SIS + ID+ I + A E L + P L DG I + + VIK Sbjct: 146 LSYSISMCDSKEIDEKGIGYCNNEVFIKACEGLSIKPDLVLSDGYLIK-NFNGENKHVIK 204 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD+ S IA ASIIAKV RD +M+ +KKYP Y F+ +VGY T H +KE GP+ IHR Sbjct: 205 GDTKSACIACASIIAKVYRDNIMKEYNKKYPQYDFEKNVGYGTKTHVDALKEVGPTEIHR 264 Query: 199 LTFRPLRNLS 208 ++F L+N+ Sbjct: 265 MSF--LKNIL 272 >gi|317478434|ref|ZP_07937595.1| ribonuclease HII [Bacteroides sp. 4_1_36] gi|316905393|gb|EFV27186.1| ribonuclease HII [Bacteroides sp. 4_1_36] Length = 202 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 77/176 (43%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L V P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HRLTF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTF 188 >gi|325856482|ref|ZP_08172171.1| ribonuclease HII [Prevotella denticola CRIS 18C-A] gi|325483451|gb|EGC86424.1| ribonuclease HII [Prevotella denticola CRIS 18C-A] Length = 200 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 68/176 (38%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG L G V AA+IL P ++DSKK++ +KR L + I A+ ++ Sbjct: 13 AGCDEAGRGCLVGSVYAAAVILPPGYQNSLLDDSKKLTARKRYALRDTIEHDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI A+ A++ A++ L+V P + ++DG +IKGD LS Sbjct: 73 VTPEEIDRINILNASFLAMHRALDQLKVRPEAVIVDGNRFTPYRKLPFATIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y + ++GYPT KH+Q I+E G + HR ++ Sbjct: 133 IAAASILAKTYRDDYMCSLAEEYPQYDWQKNMGYPTKKHRQAIREYGITPYHRRSY 188 >gi|270295437|ref|ZP_06201638.1| ribonuclease HII [Bacteroides sp. D20] gi|270274684|gb|EFA20545.1| ribonuclease HII [Bacteroides sp. D20] Length = 202 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 77/176 (43%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPTDFKNELLNDSKQLTEKQRYTLREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L V P+ LIDG + V+KGD LS Sbjct: 73 ISPEEIDKINILNASFLAMHRAVDQLNVRPQHLLIDGNRFKKYRDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HRLTF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNRNKGYPTKKHRAAIAERGTTPYHRLTF 188 >gi|315648159|ref|ZP_07901260.1| ribonuclease HII [Paenibacillus vortex V453] gi|315276805|gb|EFU40148.1| ribonuclease HII [Paenibacillus vortex V453] Length = 205 Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 86/200 (43%), Positives = 114/200 (57%), Gaps = 7/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E +AGIDEVGRG L G VV AA+IL + GI+DSKK+S KKRE L Sbjct: 5 LMYERDYWNH-YIHIAGIDEVGRGCLFGDVVAAAVILPEGLVIEGIDDSKKLSAKKRETL 63 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A + + + ID+ NI +A A+ AVE L V P+ L+D D Sbjct: 64 YDLIMEDALAVGVGLVDAETIDRINIKQAARLAMKMAVEQLAVTPQFLLVDAEK--VDCD 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD+ S SIAAASIIAKVTRDRL +YP+YG H GY T H++ ++ Sbjct: 122 IPQRAIIKGDANSQSIAAASIIAKVTRDRLCEREWEARYPEYGIAVHKGYATKFHREQLQ 181 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 GP+ +HR +F L+N+ + Sbjct: 182 LHGPTSMHRRSF--LKNMEI 199 >gi|297626589|ref|YP_003688352.1| ribonuclease HII [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922354|emb|CBL56926.1| Ribonuclease HII [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 211 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 75/196 (38%), Positives = 112/196 (57%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71 E + PVAG DE GRGA AGP+V AA+IL DP + ++DSK ++ ++RE Sbjct: 10 YEQALAASGFGPVAGADEAGRGACAGPLVAAAVILSEDPQDHIEDLHDSKTLTARRRERA 69 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I + A S+ D+ + +A L + A+ L P AL DG ++ LP Sbjct: 70 FDQIKAHALSWSVVCVGPAECDRLGMQEADLQGLRRALLRLDPSPGFALTDGFAVA-GLP 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGD + ++AASI+AKVTRDRLM A +++P YGF+ H GY T HQ+ ++ Sbjct: 129 VPGLGMWKGDRVCACVSAASIVAKVTRDRLMVRAAQQFPVYGFEIHKGYATKLHQERLEA 188 Query: 191 KGPSCIHRLTFRPLRN 206 GPS IHR ++ +R Sbjct: 189 LGPSAIHRRSYANVRR 204 >gi|261408005|ref|YP_003244246.1| Ribonuclease H [Paenibacillus sp. Y412MC10] gi|329924283|ref|ZP_08279438.1| ribonuclease HII [Paenibacillus sp. HGF5] gi|261284468|gb|ACX66439.1| Ribonuclease H [Paenibacillus sp. Y412MC10] gi|328940765|gb|EGG37080.1| ribonuclease HII [Paenibacillus sp. HGF5] Length = 205 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 84/200 (42%), Positives = 114/200 (57%), Gaps = 7/200 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AGIDEVGRG L G VV AA+I+ + GINDSKK+S KKRE L Sbjct: 5 LMYEREYWSR-YIHIAGIDEVGRGCLFGDVVAAAVIMPEGLVIEGINDSKKLSAKKRETL 63 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+ I A + + + ID+ NI +A A+ A+E L V P+ L+D D Sbjct: 64 YDLIMEQALAVGVGLVDAETIDRINIKQAARLAMKKAIEQLAVPPQFLLVDAEK--VDCD 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A+IKGD+ S SI AASIIAKVTRDRL +YP+YG H GY T H++ ++ Sbjct: 122 IPQRAIIKGDANSQSIGAASIIAKVTRDRLCEGEWEARYPEYGIAVHKGYATKFHREQLQ 181 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 GP+ +HR +F L+N+ + Sbjct: 182 LHGPTAMHRRSF--LKNMEI 199 >gi|197104042|ref|YP_002129419.1| ribonuclease HII [Phenylobacterium zucineum HLK1] gi|196477462|gb|ACG76990.1| ribonuclease HII [Phenylobacterium zucineum HLK1] Length = 230 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 91/199 (45%), Positives = 113/199 (56%), Gaps = 7/199 (3%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKK 67 P LE PV G+DE GRG AGPV A+ILD P +P G++DSKK+S K Sbjct: 13 PTLLLEKAFV---GGPVCGVDEAGRGPWAGPVCAGAVILDSNPRKVPKGLDDSKKLSAKA 69 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L E+I A+ + AS I NI AT A+ A+E + V P AL+DG Sbjct: 70 REALEEEIKEKAVAWGVGFASVSEIASLNILHATGLAMCRAIEAMAVQPAFALVDGNYRF 129 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 DLPC+ V+ GD+ S SIAAASI+AKV RDRLM YP YGF SH GY H + Sbjct: 130 -DLPCEVTTVVGGDAKSKSIAAASILAKVARDRLMVEMDALYPGYGFASHKGYNAPSHVE 188 Query: 187 VIKEKGPSCIHRLTFRPLR 205 + GP IHRL +RP++ Sbjct: 189 ALVSLGPCEIHRLAWRPVK 207 >gi|293370450|ref|ZP_06617003.1| ribonuclease HII [Bacteroides ovatus SD CMC 3f] gi|292634442|gb|EFF52978.1| ribonuclease HII [Bacteroides ovatus SD CMC 3f] Length = 200 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 76/176 (43%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H ++P Y +D + GYPT KH+ I E+G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHDEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTF 188 >gi|89900787|ref|YP_523258.1| ribonuclease HII [Rhodoferax ferrireducens T118] gi|122479254|sp|Q21WX6|RNH2_RHOFD RecName: Full=Ribonuclease HII; Short=RNase HII gi|89345524|gb|ABD69727.1| Ribonuclease H [Rhodoferax ferrireducens T118] Length = 207 Score = 174 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPVV AA+ILD G+ DSK +S ++RE+L+++I + A Sbjct: 18 GLVAGVDEAGRGPLAGPVVAAAVILDDLQPIKGLADSKILSARRREQLFDEIRAKALCCC 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I+ AS + I++ NI +ATL A+ AVE L++ P L+DG +P +A A++KGD++ Sbjct: 78 IAQASVEEIERLNILQATLLAMRRAVEGLRLKPALVLVDGNRLPVLTM-RAEAIVKGDAL 136 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKV RDR +YP YGF H GY T +H + + G HR TF Sbjct: 137 VAAISAASILAKVHRDRWCAEVDVQYPQYGFARHKGYGTVQHLAALTKHGACPQHRKTFG 196 Query: 203 PL 204 P+ Sbjct: 197 PV 198 >gi|116621683|ref|YP_823839.1| RNase HII [Candidatus Solibacter usitatus Ellin6076] gi|122254551|sp|Q024M2|RNH2_SOLUE RecName: Full=Ribonuclease HII; Short=RNase HII gi|116224845|gb|ABJ83554.1| RNase HII [Candidatus Solibacter usitatus Ellin6076] Length = 228 Score = 174 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 81/194 (41%), Positives = 116/194 (59%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 LE +R + VAG+DEVGRGAL G V A+IL G+NDSK++ ++RE L Sbjct: 15 TLERELRARGFRAVAGVDEVGRGALFGAVFAGAVILSEERPIRGLNDSKQLDPERREVLA 74 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ SI++ ID NI++A+ A+ AV L P L+D ++P + Sbjct: 75 GRIRERAVAWSIAAVDASTIDSINIYQASRMAMRIAVSRLSPAPDFLLVD--AVPLEFAV 132 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+IKGD +IAAASI+AKV RD MR+ K +P+YG SH GY T +H + I++ Sbjct: 133 PQRALIKGDERCHAIAAASILAKVARDECMRVWDKVFPEYGLASHKGYSTPEHYRAIEQY 192 Query: 192 GPSCIHRLTFRPLR 205 GP+ +HRL+F P+R Sbjct: 193 GPTPLHRLSFEPVR 206 >gi|298372107|ref|ZP_06982097.1| ribonuclease HII [Bacteroidetes oral taxon 274 str. F0058] gi|298275011|gb|EFI16562.1| ribonuclease HII [Bacteroidetes oral taxon 274 str. F0058] Length = 207 Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 108/177 (61%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPV AA++L + +NDSK+++ K+R+ + I +A +++ Sbjct: 19 AGCDEAGRGCLAGPVFAAAVVLSADFECPHLNDSKQLTEKQRQNIRLVIEQNALAWAVAR 78 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID NI KA++ ++ A++NL +IP +IDG + + ++KGD LS Sbjct: 79 IDAEEIDNINILKASILCMHKALDNLSIIPEHIIIDGNKFIQYRDVEYKTIVKGDGKYLS 138 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAAS++AK RD M H +YP Y ++ + GYPT+KH+Q IKE G S HR +F+ Sbjct: 139 IAAASVLAKTHRDDYMSYLHLQYPHYQWNINKGYPTSKHRQAIKEFGISPYHRRSFK 195 >gi|227326550|ref|ZP_03830574.1| ribonuclease HII [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 198 Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 83/184 (45%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSK++S K+R LY++I A S Sbjct: 11 TCIAGVDEVGRGPLVGAVVTAAVILDPTRPIVGLADSKQLSEKRRLSLYDEIKEKALAWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI AT+ A+ AV L ++P LIDG P A AV+KGDS Sbjct: 71 LGRAEPEEIDQLNILHATMLAMQRAVAGLAIVPDFVLIDGNRCPALPM-SAQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G + HR +F Sbjct: 130 VAEISAASIMAKVTRDREMVELDQRFPAYGFAQHKGYPTAFHLEKLAALGATEFHRRSFA 189 Query: 203 PLRN 206 P++ Sbjct: 190 PVKR 193 >gi|156742530|ref|YP_001432659.1| ribonuclease HII [Roseiflexus castenholzii DSM 13941] gi|189043650|sp|A7NM86|RNH2_ROSCS RecName: Full=Ribonuclease HII; Short=RNase HII gi|156233858|gb|ABU58641.1| Ribonuclease H [Roseiflexus castenholzii DSM 13941] Length = 224 Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 74/205 (36%), Positives = 103/205 (50%), Gaps = 5/205 (2%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKI 63 P E E + +AGIDE GRG AGPVV AA+IL I G+ DSK + Sbjct: 6 PPTVEEERALCAVGYRAIAGIDEAGRGCWAGPVVAAAVILPERVIAKPELLDGVADSKML 65 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + +R L+E+ITS A+ + ++ + +P L+ Sbjct: 66 TPAQRVALFERITSLAVAWAVGSVPAHVIDSHGILPATRLAMQVALLRLPLPADVLLIDA 125 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + P ++KGD LSIAAASIIAKV RDR M + + YGF +H GY TA Sbjct: 126 VRLDGWPLPQRVLVKGDVRCLSIAAASIIAKVMRDRFMEGLGRYWTRYGFAAHKGYGTAA 185 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 HQ+ ++ GP+ HRLTFRPL +++ Sbjct: 186 HQEALRRYGPTPHHRLTFRPLCDMA 210 >gi|298694537|gb|ADI97759.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED133] Length = 255 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 4/197 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++N + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAYAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|110834018|ref|YP_692877.1| ribonuclease H [Alcanivorax borkumensis SK2] gi|123149533|sp|Q0VQE3|RNH2_ALCBS RecName: Full=Ribonuclease HII; Short=RNase HII gi|110647129|emb|CAL16605.1| ribonuclease H [Alcanivorax borkumensis SK2] Length = 220 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 89/188 (47%), Positives = 111/188 (59%), Gaps = 3/188 (1%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 + M VAG+DEVGRG L G VV AA+ILDP G+ DSKKIS KKR L +I S Sbjct: 25 FWQPGM-LVAGVDEVGRGPLVGAVVTAAVILDPKYPIVGLADSKKISEKKRLALESEIKS 83 Query: 78 SA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A ++ A ID+ NI AT+ A+ AV L V + LIDG +P C A AV Sbjct: 84 HALGWALGRAESDEIDQLNILHATMLAMQRAVAALPVEAHAVLIDGNRVPALQ-CPAQAV 142 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGD +I+AASI+AKV RDR M H +YP YGFD H GYPTA H +++ G Sbjct: 143 VKGDGRVPAISAASILAKVARDREMYALHARYPQYGFDRHKGYPTAVHMAALEQHGALAE 202 Query: 197 HRLTFRPL 204 HR +F P+ Sbjct: 203 HRRSFGPV 210 >gi|330997790|ref|ZP_08321625.1| ribonuclease HII [Paraprevotella xylaniphila YIT 11841] gi|329569678|gb|EGG51443.1| ribonuclease HII [Paraprevotella xylaniphila YIT 11841] Length = 207 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE GRG LAG V AA+IL + +NDSK++S KKR L +I A ++ Sbjct: 13 AGLDEAGRGCLAGAVYAAAVILPKDYRNEMLNDSKQLSEKKRYLLRGQIERDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + Q ID+ NI A+ A++ A++ L V P + L+DG V+KGD +S Sbjct: 73 VTPQEIDEINILNASFLAMHRALDQLAVRPEALLVDGNRFKPYRDLPHTTVVKGDGKYMS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H++YP Y +DS+ GYP H++ I+ G + HR+++ Sbjct: 133 IAAASILAKTYRDDYMLRLHEEYPVYHWDSNKGYPAKAHREAIRRHGVTPYHRMSY 188 >gi|163856833|ref|YP_001631131.1| ribonuclease HII [Bordetella petrii DSM 12804] gi|163260561|emb|CAP42863.1| rnhB [Bordetella petrii] Length = 187 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 109/180 (60%), Gaps = 2/180 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE GRG LAG V AA+ILDP G+ DSK ++ ++REEL I A ++S Sbjct: 2 AGVDEAGRGPLAGGVYAAAVILDPGRPVDGLADSKVLTAERREELAAHIQERALAWCVAS 61 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ ID NI +ATL A+ AV+ L P+ A++DG L C VIKGD++ + Sbjct: 62 ATVLEIDTLNILRATLLAMQRAVDGLGQAPQVAMVDGN-QAPTLRCTVQTVIKGDALVPA 120 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD ++ H YP YGFD H GY TA H Q ++E GP HR +F P+R Sbjct: 121 ISAASILAKTARDADLQRLHALYPQYGFDQHKGYGTALHMQRLREHGPCPEHRRSFAPVR 180 >gi|16124634|ref|NP_419198.1| ribonuclease HII [Caulobacter crescentus CB15] gi|13421536|gb|AAK22366.1| ribonuclease HII [Caulobacter crescentus CB15] Length = 205 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 89/185 (48%), Positives = 110/185 (59%), Gaps = 2/185 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 PV G+DE GRG AGPV A+ILDP+ IP G+NDSKK+S K R L E+I AI Sbjct: 8 GQAPVCGVDEAGRGPWAGPVSAGAVILDPDRIPKGLNDSKKLSAKARAALEEEIKDVAIS 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + AS + I + NI A A+ AVE L V P AL+DG + C VIKGD Sbjct: 68 WCVGLASIEEIAQLNILHAAGLAMRRAVEGLAVTPAFALVDGNYAFKLP-CPVKTVIKGD 126 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+S SIAAASI+AK RDR+M A YP YGF H GY H + ++ GPS IHRL Sbjct: 127 SLSCSIAAASILAKEARDRIMIEADALYPGYGFAGHKGYHAKVHVEGLRRLGPSPIHRLG 186 Query: 201 FRPLR 205 + P++ Sbjct: 187 WAPVK 191 >gi|260172441|ref|ZP_05758853.1| ribonuclease HII [Bacteroides sp. D2] gi|315920736|ref|ZP_07916976.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694611|gb|EFS31446.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 200 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLSTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTF 188 >gi|326791381|ref|YP_004309202.1| ribonuclease H [Clostridium lentocellum DSM 5427] gi|326542145|gb|ADZ84004.1| Ribonuclease H [Clostridium lentocellum DSM 5427] Length = 254 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 80/202 (39%), Positives = 119/202 (58%), Gaps = 11/202 (5%) Query: 11 HFELEAMVRE----------KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 +E E + + N + + GIDEVGRG LAGPVV AA+IL + G+ DS Sbjct: 46 TYENELALWQLKCEFDSIFHDNQYILVGIDEVGRGPLAGPVVAAAVILPYDTNLVGLKDS 105 Query: 61 KKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK++ KRE+LY++I S+A I I ID+ NI +AT +A+ HA+ L++ L Sbjct: 106 KKLTEPKREKLYDQIQSNALGIGIGIVDADRIDEINILQATFEAMRHALSELKIDYDRVL 165 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +DG + + + A+I GD S SIAAAS+IAKVTRDR+M+ Y Y ++++ GY Sbjct: 166 VDGDKVIPKIQIRQEAIIGGDDKSASIAAASVIAKVTRDRMMKAYANTYDKYDWENNKGY 225 Query: 180 PTAKHQQVIKEKGPSCIHRLTF 201 + KH + I+ G + +HR +F Sbjct: 226 GSQKHYEAIRNYGITPLHRKSF 247 >gi|294635136|ref|ZP_06713646.1| ribonuclease HII [Edwardsiella tarda ATCC 23685] gi|291091472|gb|EFE24033.1| ribonuclease HII [Edwardsiella tarda ATCC 23685] Length = 197 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 86/184 (46%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S Sbjct: 11 ERIAGVDEVGRGPLVGAVVTAAVILDPARPIRGLADSKKLSEKRRNALYDEIVEKALCWS 70 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A + ID+ NI +AT+ A+ AV L + P LIDG P A AV+KGDS Sbjct: 71 LGRAEPEEIDRLNILQATMVAMQRAVAGLTLPPDLVLIDGNRCPALPMA-AQAVVKGDSR 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M ++YP YGF H GYPTA H + E G + HR +F Sbjct: 130 VAEISAASILAKVTRDREMAALDRQYPAYGFAQHKGYPTALHLARLAELGATDQHRRSFA 189 Query: 203 PLRN 206 P++ Sbjct: 190 PVKR 193 >gi|157363760|ref|YP_001470527.1| ribonuclease HII [Thermotoga lettingae TMO] gi|189043671|sp|A8F5M9|RNH2_THELT RecName: Full=Ribonuclease HII; Short=RNase HII gi|157314364|gb|ABV33463.1| Ribonuclease H [Thermotoga lettingae TMO] Length = 224 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 86/199 (43%), Positives = 120/199 (60%), Gaps = 7/199 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F + ++N V G+DE GRG LAGPVV AA+IL+ + + DSK+++ +KREEL Sbjct: 6 FAYDR-FYKQNFGTVIGVDEAGRGCLAGPVVAAAVILE---VQLDVFDSKQLTAQKREEL 61 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + +I +SA + I A+ + ID +NI AT A+ A+ +L L+DG+S+ Sbjct: 62 FLQIMNSAEVGIGIATPEEIDLYNIFNATKIAMNRALASLNKKDAYVLVDGKSLNLSQQG 121 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD S SIAAASI+AKV RDR+M + YP YGF H GY T H I+E Sbjct: 122 --VCIVKGDEKSASIAAASIVAKVLRDRIMVAHDRIYPCYGFSKHKGYGTVHHLNAIREF 179 Query: 192 GPSCIHRLTFRPL-RNLSV 209 GP+ HRL+F P+ NLSV Sbjct: 180 GPTVFHRLSFSPVLSNLSV 198 >gi|150021773|ref|YP_001307127.1| ribonuclease HII [Thermosipho melanesiensis BI429] gi|189043672|sp|A6LP91|RNH2_THEM4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|149794294|gb|ABR31742.1| Ribonuclease H [Thermosipho melanesiensis BI429] Length = 216 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 74/184 (40%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 VAG+DE GRG L GPVV +A++L +GI DSKK++ K+REEL+ +I ++ I Sbjct: 2 IVAGVDEAGRGPLFGPVVASAVVLKKE--IYGITDSKKLTLKQREELFMEIIRNSYFGIG 59 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS IDK NI AT A+ A+ L+ R ++ L ++ ++KGD + Sbjct: 60 FASSSEIDKLNILHATELAMNRALAMLERKIRFDMVLVDGKNLKLDYKSKCIVKGDVLIK 119 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASIIAKV RD++M KK+ +Y + H GYPT H ++I++ G + HRLTF+P+ Sbjct: 120 EISAASIIAKVVRDKIMTFYSKKFSNYALEKHKGYPTKDHIKLIEKYGLTPEHRLTFKPI 179 Query: 205 RNLS 208 + Sbjct: 180 TKML 183 >gi|16759220|ref|NP_454837.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763620|ref|NP_459235.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140770|ref|NP_804112.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412503|ref|YP_149578.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167990117|ref|ZP_02571217.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230539|ref|ZP_02655597.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168244998|ref|ZP_02669930.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194442556|ref|YP_002039470.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447841|ref|YP_002044220.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469389|ref|ZP_03075373.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197262827|ref|ZP_03162901.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361438|ref|YP_002141074.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243184|ref|YP_002214191.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388767|ref|ZP_03215379.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207855748|ref|YP_002242399.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213163685|ref|ZP_03349395.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418465|ref|ZP_03351531.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425956|ref|ZP_03358706.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580323|ref|ZP_03362149.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648458|ref|ZP_03378511.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|238911296|ref|ZP_04655133.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825702|ref|ZP_06544870.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|61234136|sp|P0A2C1|RNH2_SALTY RecName: Full=Ribonuclease HII; Short=RNase HII gi|61234141|sp|P0A2C2|RNH2_SALTI RecName: Full=Ribonuclease HII; Short=RNase HII gi|73917833|sp|Q5PD71|RNH2_SALPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|238689913|sp|B5BAP0|RNH2_SALPK RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690313|sp|B5FJ30|RNH2_SALDC RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690458|sp|B5R422|RNH2_SALEP RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690680|sp|B4TK58|RNH2_SALHS RecName: Full=Ribonuclease HII; Short=RNase HII gi|238693524|sp|B4SV12|RNH2_SALNS RecName: Full=Ribonuclease HII; Short=RNase HII gi|25289252|pir||AH0530 ribonuclease HII [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16418735|gb|AAL19194.1| RNAse HII [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501511|emb|CAD08688.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi] gi|29136394|gb|AAO67961.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126760|gb|AAV76266.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194401219|gb|ACF61441.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406145|gb|ACF66364.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455753|gb|EDX44592.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197092914|emb|CAR58343.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197241082|gb|EDY23702.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197937700|gb|ACH75033.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605865|gb|EDZ04410.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205331449|gb|EDZ18213.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335176|gb|EDZ21940.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336201|gb|EDZ22965.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206707551|emb|CAR31825.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261245462|emb|CBG23252.1| RNase HII [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991921|gb|ACY86806.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156857|emb|CBW16333.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911200|dbj|BAJ35174.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222186|gb|EFX47258.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128550|gb|ADX15980.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621934|gb|EGE28279.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987182|gb|AEF06165.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 198 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 111/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P +LP + AV+KGDS Sbjct: 71 GRAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCP-ELPVPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + + G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|282881109|ref|ZP_06289796.1| ribonuclease HII [Prevotella timonensis CRIS 5C-B1] gi|281304913|gb|EFA96986.1| ribonuclease HII [Prevotella timonensis CRIS 5C-B1] Length = 200 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 68/176 (38%), Positives = 108/176 (61%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG + AA+IL + +NDSK+++ KKR EL E I +A+ ++ Sbjct: 13 AGCDEAGRGCLAGSIFAAAVILPSDYDNHVLNDSKQLTRKKRNELREVIMQAAVAWAVGE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S Q ID+ NI +A+ A++ A++ L+V P++ ++DG ++KGD+ S Sbjct: 73 VSPQEIDEINILRASFLAMHRALDQLKVRPQAIIVDGNRFTPYHDIPYTTIVKGDAKYQS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y ++S++GYPT +H+ I++ G + HR ++ Sbjct: 133 IAAASILAKTFRDDYMDRLAEEYPQYHWESNMGYPTREHRAAIQQYGVTPYHRRSY 188 >gi|224536639|ref|ZP_03677178.1| hypothetical protein BACCELL_01515 [Bacteroides cellulosilyticus DSM 14838] gi|224521730|gb|EEF90835.1| hypothetical protein BACCELL_01515 [Bacteroides cellulosilyticus DSM 14838] Length = 201 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEHQRYALREVIEKEALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L++ P+ LIDG + VIKGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDQLKMRPQHLLIDGNRFKKYQDLPHTTVIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF Sbjct: 133 IAAASVLAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAISERGTTPYHRMTF 188 >gi|203287517|ref|YP_002222532.1| ribonuclease H [Borrelia recurrentis A1] gi|238690580|sp|B5RQM7|RNH2_BORRA RecName: Full=Ribonuclease HII; Short=RNase HII gi|201084737|gb|ACH94311.1| ribonuclease H [Borrelia recurrentis A1] Length = 181 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 109/181 (60%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GPV+ AA+I N ++DSKK++ KRE L I +A + Sbjct: 1 MICGIDEVGRGCIFGPVLSAAVIFKTKPNFLNELDDSKKLTKTKREYLSSLILENAYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S++ IDK NIH A+L A+ A + L + L+DG+ IP+ Q A+IKGDS+ Sbjct: 61 ADISNEIIDKINIHNASLLAMQIAYQKLNIECNLVLVDGKFIPKIQAKQIRAIIKGDSMI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP YG + GYPT +H+ IK+ G +HR +FR Sbjct: 121 DEIKAASIIAKVQRDKLMVEYDKIYPLYGLKKNKGYPTKEHKDAIKKHGILSLHRKSFRL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|255534413|ref|YP_003094784.1| Ribonuclease HII [Flavobacteriaceae bacterium 3519-10] gi|255340609|gb|ACU06722.1| Ribonuclease HII [Flavobacteriaceae bacterium 3519-10] Length = 218 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DEVGRG L GPVV AA+ILD + ++DSKK++ K R L I + +++ Sbjct: 26 AGCDEVGRGCLCGPVVAAAVILDEKFVQNLVDDSKKLNFKTRIYLDAYIKDNVKEYAVAE 85 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 +ID+HNI A++ A++ A++ LQ P L+DG +IKGD+ LS Sbjct: 86 LPPSHIDEHNILNASIHAMHRALDQLQTRPELILVDGNRFHPYNFIPHQCIIKGDASILS 145 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IA ASI+AK RD+LM H ++P YG+ +++GY T +H++ + GP+ HR +FR Sbjct: 146 IACASILAKNYRDQLMIKLHDEFPHYGWKTNMGYATKEHREALNRYGPTEHHRRSFR 202 >gi|160883918|ref|ZP_02064921.1| hypothetical protein BACOVA_01892 [Bacteroides ovatus ATCC 8483] gi|237720405|ref|ZP_04550886.1| ribonuclease HII [Bacteroides sp. 2_2_4] gi|156110648|gb|EDO12393.1| hypothetical protein BACOVA_01892 [Bacteroides ovatus ATCC 8483] gi|229450156|gb|EEO55947.1| ribonuclease HII [Bacteroides sp. 2_2_4] Length = 200 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTF 188 >gi|313206271|ref|YP_004045448.1| ribonuclease h [Riemerella anatipestifer DSM 15868] gi|312445587|gb|ADQ81942.1| Ribonuclease H [Riemerella anatipestifer DSM 15868] gi|325336287|gb|ADZ12561.1| Ribonuclease HII [Riemerella anatipestifer RA-GD] Length = 194 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 77/177 (43%), Positives = 108/177 (61%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG L GPVV AA+ILD N INDSKK++ K R EL I A +I+ Sbjct: 14 AGCDEAGRGCLCGPVVAAAVILDENFEQNLINDSKKLNFKTRNELDLYIKDYALDYAIAE 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 +ID+HNI A++ A++ A++ L + P L+DG +IKGDS LS Sbjct: 74 LPPSFIDEHNILNASIHAMHLALDKLTIRPELILVDGNRFKPYPFTPHECIIKGDSKVLS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD +M H++YP+YG++ + GY T +H++ + + GP+ HR +FR Sbjct: 134 IAAASILAKNYRDHVMIKLHEEYPEYGWNKNFGYATKQHREALNKLGPTIHHRKSFR 190 >gi|148292195|dbj|BAF62910.1| putative ribonuclease H [uncultured bacterium] Length = 229 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 15/217 (6%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGIN 58 F ++ + P + LE+ V G+DE GRG AGPV AA + P +++P + Sbjct: 9 FNDTASDLPDYTLESA--ASGNGAVIGVDEAGRGPWAGPVTAAAFWIYPAAKDSLPASLT 66 Query: 59 DSKKISHKKREELYEKIT---SSAIISISSASHQYIDKHNIHKATLDAIYHAV------- 108 DSKK+S KR+++ + + S + ++ +S ID I AT A+ AV Sbjct: 67 DSKKLSASKRQQIEQALCAPHSQHLWAVKHSSVNQIDTCGILPATFAAMAEAVAELAKTL 126 Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + +P + ++ ++ L AV++GDS SLSIAAASI+AK +RD +M Y Sbjct: 127 QKRHNLPVAMVLVDGNLLPPLDFPCQAVVRGDSRSLSIAAASILAKQSRDEVMTELASHY 186 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 PDYG+ ++ GY T HQQ ++ G + HR +F P++ Sbjct: 187 PDYGWQTNAGYGTKAHQQALQRCGITPHHRKSFAPIK 223 >gi|118444390|ref|YP_878279.1| ribonuclease HII [Clostridium novyi NT] gi|189043585|sp|A0Q0X7|RNH2_CLONN RecName: Full=Ribonuclease HII; Short=RNase HII gi|118134846|gb|ABK61890.1| ribonuclease H [Clostridium novyi NT] Length = 269 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 86/203 (42%), Positives = 117/203 (57%), Gaps = 10/203 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHK 66 +E + + +AG DEVGRG LAGP+V AA++LD N+ INDSKKIS + Sbjct: 68 YEFDKKYIKSG-TYLAGADEVGRGPLAGPIVAAAVVLDLDIINDENLILRINDSKKISFE 126 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 REEL + I A+ SI S + ID+ I + + +V NL+V P L DG I Sbjct: 127 VREELSKIIKERAVSYSIQEISSEEIDEKGIAWCNNEVLKRSVCNLKVDPDLVLSDGYKI 186 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + V+KGD+ S SIA ASIIAKV RD LM KKYP+Y F+ ++GY T +H Sbjct: 187 K-NCTINNEFVVKGDAKSASIACASIIAKVYRDNLMIEYSKKYPEYMFNKNMGYGTKEHI 245 Query: 186 QVIKEKGPSCIHRLTFRPLRNLS 208 + IK+ G + IHR +F L+N+ Sbjct: 246 EAIKKFGCTKIHRKSF--LKNIL 266 >gi|15604075|ref|NP_220590.1| ribonuclease HII [Rickettsia prowazekii str. Madrid E] gi|7227932|sp|Q9ZDW3|RNH2_RICPR RecName: Full=Ribonuclease HII; Short=RNase HII gi|3860766|emb|CAA14667.1| RIBONUCLEASE HII (rnhB) [Rickettsia prowazekii] gi|292571798|gb|ADE29713.1| Ribonuclease HII [Rickettsia prowazekii Rp22] Length = 193 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 87/193 (45%), Positives = 118/193 (61%), Gaps = 5/193 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + VAG+DE GRG+L GPVV +A+I+D +I GI DSKK+S KRE L Sbjct: 6 LQYEKKYHN---YIVAGVDEAGRGSLVGPVVASAVIIDKADIIPGIKDSKKLSKNKREIL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + S + +H ID NI +AT A AV NL + P+ L+DG D Sbjct: 63 YERITSNYVWSTAIIAHTEIDNINILEATKKACAIAVANLSLKPQKILVDGNMKFSD--I 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++I GD++SLSIAAASIIAKVTRDRLM ++P Y + + GY T +H + IK Sbjct: 121 RFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEFPQYLWHKNYGYGTREHIEAIKTH 180 Query: 192 GPSCIHRLTFRPL 204 G S HR +F+ Sbjct: 181 GLSSYHRRSFKSC 193 >gi|330836476|ref|YP_004411117.1| Ribonuclease H [Spirochaeta coccoides DSM 17374] gi|329748379|gb|AEC01735.1| Ribonuclease H [Spirochaeta coccoides DSM 17374] Length = 210 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 106/194 (54%), Gaps = 5/194 (2%) Query: 13 ELEAMVREKNMWP---VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 + + ++ P + GIDE GRG LAGPV AA+IL P+ + DSKK+S K+R Sbjct: 4 SYDTELFNQDESPSPRICGIDEAGRGPLAGPVCAAAVILPPDFPRDILGDSKKLSEKQRL 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL--QVIPRSALIDGRSIPE 127 I A+ I AS Q ID++NI +AT A+ AVE + Q L+ + Sbjct: 64 AAEIIIREQAVWGIGWASAQEIDRYNILQATFRAMRRAVEKVIAQDRQVELLLIDGNRTF 123 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + A+IKGDS I AASI+AK RDR MR +K+P+Y F+ H GYP+ +H Sbjct: 124 PHAIPSAAIIKGDSKVPEIMAASILAKTARDRFMRRMAEKWPEYNFEQHKGYPSRQHVSA 183 Query: 188 IKEKGPSCIHRLTF 201 + GP +HRL+F Sbjct: 184 YRTHGPCPLHRLSF 197 >gi|300087868|ref|YP_003758390.1| ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527601|gb|ADJ26069.1| Ribonuclease H [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 212 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 95/206 (46%), Gaps = 3/206 (1%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN---IPFGIND 59 + P F E+ + +AG+DE GRGALAGPVV AA+IL + D Sbjct: 1 MKARQPVPGFREESKLHGNGYRLIAGVDEAGRGALAGPVVAAAVILGRRRRSGWLKAVRD 60 Query: 60 SKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 SK +S R+ LY IT +A+ + + AL Sbjct: 61 SKLLSPANRDRLYGLITENALSWGVGVVSHHFIDRHGIVPGTRLAMALALENLDPSPEAL 120 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + + +I GD++ +SIA AS+IAKVTRDRLM +YP Y F H GY Sbjct: 121 LIDYLTLPAVTLPQKGIIDGDAVCVSIACASVIAKVTRDRLMIGLDNRYPGYRFGRHKGY 180 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPLR 205 TA+H ++ GP +HR +F P++ Sbjct: 181 GTAEHLDCLERLGPCSVHRRSFAPVQ 206 >gi|62178800|ref|YP_215217.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612603|ref|YP_001586568.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553356|ref|ZP_02347105.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168235010|ref|ZP_02660068.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168264638|ref|ZP_02686611.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464205|ref|ZP_02698108.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823100|ref|ZP_02835100.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194734669|ref|YP_002113253.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249555|ref|YP_002145235.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204926664|ref|ZP_03217866.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351567|ref|YP_002225368.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|224582078|ref|YP_002635876.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|73917832|sp|Q57T25|RNH2_SALCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043655|sp|A9N0T3|RNH2_SALPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|238689765|sp|B4TYE3|RNH2_SALSV RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690066|sp|B5F8U4|RNH2_SALA4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238690468|sp|B5R5I6|RNH2_SALG2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807986|sp|C0Q6K6|RNH2_SALPC RecName: Full=Ribonuclease HII; Short=RNase HII gi|62126433|gb|AAX64136.1| RNAse HII [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161361967|gb|ABX65735.1| hypothetical protein SPAB_00294 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194710171|gb|ACF89392.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632881|gb|EDX51335.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213258|gb|ACH50655.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197291997|gb|EDY31347.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323329|gb|EDZ08524.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271348|emb|CAR36141.1| Ribonuclease HII [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322169|gb|EDZ10008.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205340607|gb|EDZ27371.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205346925|gb|EDZ33556.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224466605|gb|ACN44435.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320084484|emb|CBY94277.1| RNAse HII [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322616054|gb|EFY12971.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620837|gb|EFY17697.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623812|gb|EFY20649.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627260|gb|EFY24051.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630567|gb|EFY27331.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638215|gb|EFY34916.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640700|gb|EFY37351.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645516|gb|EFY42043.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648190|gb|EFY44657.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322657141|gb|EFY53424.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657511|gb|EFY53783.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663831|gb|EFY60031.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666664|gb|EFY62842.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672178|gb|EFY68290.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676511|gb|EFY72582.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679397|gb|EFY75442.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686276|gb|EFY82260.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713254|gb|EFZ04825.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323193456|gb|EFZ78664.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197522|gb|EFZ82657.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201209|gb|EFZ86278.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209604|gb|EFZ94537.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212144|gb|EFZ96968.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216449|gb|EGA01175.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223361|gb|EGA07696.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225922|gb|EGA10142.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228537|gb|EGA12666.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236850|gb|EGA20926.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239650|gb|EGA23697.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242303|gb|EGA26332.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249965|gb|EGA33861.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252395|gb|EGA36246.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255678|gb|EGA39431.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262885|gb|EGA46435.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265371|gb|EGA48867.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271842|gb|EGA55260.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326626594|gb|EGE32937.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 198 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 108/183 (59%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI AT+ A+ AV L + P LIDG P + AV+KGDS Sbjct: 71 GRAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPALP-VPSMAVVKGDSRV 129 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRD M +P YGF H GYPTA H + + + G + HR +F P Sbjct: 130 AEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAP 189 Query: 204 LRN 206 ++ Sbjct: 190 VKR 192 >gi|237716674|ref|ZP_04547155.1| ribonuclease HII [Bacteroides sp. D1] gi|262405448|ref|ZP_06081998.1| ribonuclease HII [Bacteroides sp. 2_1_22] gi|294646229|ref|ZP_06723883.1| ribonuclease HII [Bacteroides ovatus SD CC 2a] gi|294809104|ref|ZP_06767822.1| ribonuclease HII [Bacteroides xylanisolvens SD CC 1b] gi|229442657|gb|EEO48448.1| ribonuclease HII [Bacteroides sp. D1] gi|262356323|gb|EEZ05413.1| ribonuclease HII [Bacteroides sp. 2_1_22] gi|292638447|gb|EFF56811.1| ribonuclease HII [Bacteroides ovatus SD CC 2a] gi|294443658|gb|EFG12407.1| ribonuclease HII [Bacteroides xylanisolvens SD CC 1b] Length = 200 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL +NDSK++S K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKGFKNELLNDSKQLSEKQRYALREVIEKEAIAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VLPEEIDEINILRASFLAMHRAVDQLTTRPQHLLIDGNRFTKYPGIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTF 188 >gi|119774290|ref|YP_927030.1| ribonuclease HII [Shewanella amazonensis SB2B] gi|189043657|sp|A1S4Q4|RNH2_SHEAM RecName: Full=Ribonuclease HII; Short=RNase HII gi|119766790|gb|ABL99360.1| Ribonuclease H [Shewanella amazonensis SB2B] Length = 206 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 92/197 (46%), Positives = 120/197 (60%), Gaps = 5/197 (2%) Query: 11 HFELEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 + E + ++ VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ KKR+ Sbjct: 6 NLSPEQTVLLQQG--RVAGVDEVGRGPLVGDVVTAAVILDPNKPIAGLNDSKKLTEKKRD 63 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 LY +I A +S+ AS ID+ NI AT+ A+ AV L ++P S L+DG P D Sbjct: 64 ALYLEIMDKALAVSVGRASPTEIDELNILHATMLAMQRAVAGLTIVPESVLVDGNRTP-D 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 A AV+KGD + +I+AAS+IAKVTRDR M +YP YGF H GYPT H + I Sbjct: 123 FGVPAHAVVKGDGLIAAISAASVIAKVTRDREMGELDARYPQYGFAGHKGYPTKAHFEAI 182 Query: 189 KEKGPSCIHRLTFRPLR 205 G HR +FRP+R Sbjct: 183 SAHGVLAEHRRSFRPVR 199 >gi|114331990|ref|YP_748212.1| ribonuclease H [Nitrosomonas eutropha C91] gi|122313303|sp|Q0AEI5|RNH2_NITEC RecName: Full=Ribonuclease HII; Short=RNase HII gi|114309004|gb|ABI60247.1| RNase HII [Nitrosomonas eutropha C91] Length = 219 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 74/190 (38%), Positives = 106/190 (55%), Gaps = 1/190 (0%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + G+DE GRG LAGPV A ++LD + G+ DSK++S K+R L E+I Sbjct: 24 REWIHPEGKAIYGVDEAGRGPLAGPVYAACVVLDSCYVINGLADSKQLSEKRRASLAEQI 83 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A +I+SAS + ID+ NI +A++ A+ AV L + + ++ + L + Sbjct: 84 KQHARAWAIASASVEEIDRLNILQASMLAMRRAVIELMPVSNALILVDGTHVPQLDYEVQ 143 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 AVI+GDS+ I+AASI+AK RD M H+ YP YGFD H GYPT H I+ G + Sbjct: 144 AVIRGDSLVAEISAASILAKTARDAEMLRLHEIYPIYGFDRHKGYPTRVHLDAIRLHGIT 203 Query: 195 CIHRLTFRPL 204 HR +F P Sbjct: 204 ATHRKSFAPC 213 >gi|51893167|ref|YP_075858.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863] gi|81388613|sp|Q67MS9|RNH22_SYMTH RecName: Full=Ribonuclease HII 2; Short=RNase HII 2 gi|51856856|dbj|BAD41014.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863] Length = 211 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 77/201 (38%), Positives = 107/201 (53%), Gaps = 11/201 (5%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 LE ++ V G+DE GRG LAGPVV AA IL P+ G++DSK+++ K+RE Sbjct: 3 DLRLERVLWRHGCQ-VIGVDEAGRGPLAGPVVAAACILPPDAALPGVDDSKRMTEKRREA 61 Query: 71 LYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA---------LI 120 + I + I ID+ NI +AT +A+ AVE + + + L+ Sbjct: 62 AFAAIQAVAVGWGIGIVDAARIDEINILQATFEAMAQAVEGARAMAAARPGRTAEAALLV 121 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DG P V+ GD SLSIAAASI+AKVTRDR+M YP+YGF + GY Sbjct: 122 DGNRPLPLWPGWQRTVVGGDHKSLSIAAASILAKVTRDRMMIEYDAHYPEYGFARNKGYG 181 Query: 181 TAKHQQVIKEKGPSCIHRLTF 201 + +H ++ GP +HR TF Sbjct: 182 SREHWDALERYGPCPLHRRTF 202 >gi|217974046|ref|YP_002358797.1| ribonuclease HII [Shewanella baltica OS223] gi|254807987|sp|B8E7Q2|RNH2_SHEB2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|217499181|gb|ACK47374.1| Ribonuclease H [Shewanella baltica OS223] Length = 210 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 118/200 (59%), Gaps = 6/200 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 EA + + +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++ Sbjct: 9 EADLLSFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDE 68 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ- 132 I A + AS ID+ NI AT+ A+ AV L + P L+DG P + Sbjct: 69 ICDKALCYQVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNG 128 Query: 133 ----AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++IKGD + SI+AASIIAKVTRDR M + YP YGF H GYPT H + I Sbjct: 129 AGLTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHRGYPTKAHFEAI 188 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 E G +R +F+P++ L Sbjct: 189 AEHGVFDQYRKSFKPVKALL 208 >gi|307152014|ref|YP_003887398.1| Ribonuclease H [Cyanothece sp. PCC 7822] gi|306982242|gb|ADN14123.1| Ribonuclease H [Cyanothece sp. PCC 7822] Length = 215 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 81/208 (38%), Positives = 121/208 (58%), Gaps = 10/208 (4%) Query: 7 PERPHFELEAMVR---EKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGIND 59 P P F++ + + +AG+DEVGRGAL GPV A+I+ P G+ D Sbjct: 4 PILPTFDI--SLLPEVKSQETLIAGVDEVGRGALFGPVAAGAVIIPVSALPQLTALGVKD 61 Query: 60 SKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SK++S KKR EL +I + A +S A+ ID+ NI +A+L A+Y AV L+V Sbjct: 62 SKQLSPKKRSELAAQIKAMALDFHVSFATVMDIDRINILQASLLAMYRAVAKLKVEAAVC 121 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 L+DG+ +L + +++GD S IAAASI+AKV RD+L+ +KYP Y ++ G Sbjct: 122 LVDGKQPIPNLAIRQENIVRGDERSPVIAAASILAKVWRDQLIVRLARKYPHYDLIANKG 181 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 Y T +H++ + + GPS HRL+FRP + Sbjct: 182 YGTIRHREALLKYGPSPQHRLSFRPCQK 209 >gi|289164797|ref|YP_003454935.1| ribonuclease HII [Legionella longbeachae NSW150] gi|288857970|emb|CBJ11830.1| putative ribonuclease HII [Legionella longbeachae NSW150] Length = 187 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 107/184 (58%), Gaps = 4/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAG VV AA+IL + G+ DSKK+S KKRE L I A + Sbjct: 6 LIAGVDEVGRGPLAGAVVTAAVILK--SPIEGLADSKKLSAKKRELLSLLIKEQALAYAY 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID NIH ATL A+ AVE L V P L+DG IP+ A+++GD + Sbjct: 64 GRAEVDEIDALNIHHATLLAMQRAVEALPVKPDQVLVDGIHIPKLN-IPCKAIVQGDDLI 122 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M YP YGF H GYPT H++ +K GPS IHR +F Sbjct: 123 PEISAASILAKVFRDAEMEALDAIYPGYGFAGHKGYPTVAHREALKRLGPSQIHRKSFAL 182 Query: 204 LRNL 207 + +L Sbjct: 183 IGSL 186 >gi|270156755|ref|ZP_06185412.1| ribonuclease HII [Legionella longbeachae D-4968] gi|269988780|gb|EEZ95034.1| ribonuclease HII [Legionella longbeachae D-4968] Length = 183 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 107/184 (58%), Gaps = 4/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAG VV AA+IL + G+ DSKK+S KKRE L I A + Sbjct: 2 LIAGVDEVGRGPLAGAVVTAAVILK--SPIEGLADSKKLSAKKRELLSLLIKEQALAYAY 59 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID NIH ATL A+ AVE L V P L+DG IP+ A+++GD + Sbjct: 60 GRAEVDEIDALNIHHATLLAMQRAVEALPVKPDQVLVDGIHIPKLN-IPCKAIVQGDDLI 118 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M YP YGF H GYPT H++ +K GPS IHR +F Sbjct: 119 PEISAASILAKVFRDAEMEALDAIYPGYGFAGHKGYPTVAHREALKRLGPSQIHRKSFAL 178 Query: 204 LRNL 207 + +L Sbjct: 179 IGSL 182 >gi|261364835|ref|ZP_05977718.1| ribonuclease HII [Neisseria mucosa ATCC 25996] gi|288566876|gb|EFC88436.1| ribonuclease HII [Neisseria mucosa ATCC 25996] Length = 196 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 1/185 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 +AG+DE GRG L G V AA+IL G+ DSKK+S KKR+ L I A+ Sbjct: 5 LLAGVDEAGRGPLVGSVFAAAVILPERYDLPGLTDSKKLSEKKRDTLAVLIKEQAVSWSV 64 Query: 85 SASH-QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +++ + I + NI AT+ A+ AV+ L V+P LIDG +P+DL A A++KGDS Sbjct: 65 ASASSEEIAELNILHATMLAMTRAVQGLVVVPDKVLIDGNRVPKDLGIPAEAIVKGDSKI 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + I+AAS++AK RD M ++YP YGFD H GY TA+H +++ G HR F P Sbjct: 125 IEISAASVLAKTARDAEMYALAERYPQYGFDQHKGYGTAQHLAALQKYGVLPEHRRDFAP 184 Query: 204 LRNLS 208 ++ L Sbjct: 185 VKALL 189 >gi|51892612|ref|YP_075303.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863] gi|81388972|sp|Q67PD4|RNH21_SYMTH RecName: Full=Ribonuclease HII 1; Short=RNase HII 1 gi|51856301|dbj|BAD40459.1| ribonuclease HII [Symbiobacterium thermophilum IAM 14863] Length = 259 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 73/189 (38%), Positives = 106/189 (56%), Gaps = 2/189 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + +AGIDEVGRG LAGPVV AA+IL GI ++K++S ++R EL Sbjct: 56 YNYERQLWSMGYRHIAGIDEVGRGPLAGPVVAAAVILPGEVELPGIEEAKRLSDRRRMEL 115 Query: 72 YEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y +I + + + + ID+ ++ AT A+ AV +L V P LIDG ++ Sbjct: 116 YRRIREVAVAVGVGLVQPEGIDEASVVVATYKAMMKAVADLPVTPDYLLIDGV-HLPNVS 174 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 V+ G+++S SIAAA+++AKV RD M KYP YGF H GY T +H+ ++ Sbjct: 175 QPQVPVVGGETLSCSIAAAAVVAKVVRDEYMVEMDAKYPAYGFAHHKGYGTPEHRLALER 234 Query: 191 KGPSCIHRL 199 GP IHR Sbjct: 235 YGPCPIHRK 243 >gi|222100634|ref|YP_002535202.1| Ribonuclease [Thermotoga neapolitana DSM 4359] gi|221573024|gb|ACM23836.1| Ribonuclease [Thermotoga neapolitana DSM 4359] Length = 245 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 85/193 (44%), Positives = 109/193 (56%), Gaps = 5/193 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 K VAGIDE GRG LAGPVV AA+IL + DSK ++ K RE+L+++I Sbjct: 6 DFYRKEYGVVAGIDEAGRGCLAGPVVAAAVIL--EYDIEEVCDSKLLTSKTREKLFDEIM 63 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A + I A+ + ID NI AT A+ A+ENL V P +IDG+ DL + Sbjct: 64 EKAAVGIGMATPEEIDLQNIFNATKMAMNRALENLPVKPSFVIIDGK--GLDLGVPGTCL 121 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD S I AASIIAKV RDRLM H YP++ F H GY T H I+ G + Sbjct: 122 VGGDRKSKLIGAASIIAKVVRDRLMEKLHDLYPEFSFHKHKGYATKDHLNEIRLHGVLPV 181 Query: 197 HRLTFRPL-RNLS 208 HR++FRP+ NLS Sbjct: 182 HRMSFRPVLENLS 194 >gi|126666166|ref|ZP_01737146.1| ribonuclease HII [Marinobacter sp. ELB17] gi|126629488|gb|EBA00106.1| ribonuclease HII [Marinobacter sp. ELB17] Length = 217 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 109/183 (59%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGRG L G VV AA+IL+P + DSKK+S KKR +L+++I A S Sbjct: 17 ELLAGVDEVGRGPLIGAVVTAAVILNPARPIKDLADSKKLSEKKRNQLFDEIIEKATAWS 76 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + ID+ NI +AT+ A+ AVE L P L+DG D A AV+KGD Sbjct: 77 LGRCEAEEIDRLNIFQATMVAMTRAVEGLNPQPEYVLVDGNR-CPDWRWPAAAVVKGDMR 135 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRDR ++ + YP YG H GYPT H + + G + HR +FR Sbjct: 136 IAAISAASILAKVTRDRELQALDQLYPGYGLAQHKGYPTTAHMEALARLGVTPQHRRSFR 195 Query: 203 PLR 205 P+R Sbjct: 196 PVR 198 >gi|114562462|ref|YP_749975.1| ribonuclease H [Shewanella frigidimarina NCIMB 400] gi|122300308|sp|Q085C8|RNH2_SHEFN RecName: Full=Ribonuclease HII; Short=RNase HII gi|114333755|gb|ABI71137.1| Ribonuclease H [Shewanella frigidimarina NCIMB 400] Length = 212 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 114/182 (62%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+R LY++I +A +S Sbjct: 22 GLVAGVDEVGRGPLIGDVVTAAVILDPNKPIVGLNDSKKLSEKRRNALYQQIMDNALSVS 81 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS ID+ NI AT+ A+ AV L ++P L+DG +P D + A+IKGD + Sbjct: 82 VGRASPAEIDELNILHATMLAMQRAVAGLSILPERVLVDGNRVP-DFGIASHAIIKGDGL 140 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASIIAKVTRD M +YP YGF H GYPT H + + G HR +F+ Sbjct: 141 VAAISAASIIAKVTRDAEMDTLDSQYPQYGFAKHKGYPTKAHFEALALYGVLPDHRKSFK 200 Query: 203 PL 204 P+ Sbjct: 201 PV 202 >gi|157803394|ref|YP_001491943.1| ribonuclease HII [Rickettsia canadensis str. McKiel] gi|166226648|sp|A8EXS5|RNH2_RICCK RecName: Full=Ribonuclease HII; Short=RNase HII gi|157784657|gb|ABV73158.1| ribonuclease HII [Rickettsia canadensis str. McKiel] Length = 196 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 91/191 (47%), Positives = 120/191 (62%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E +E + VAGIDE GRG LAGPVV +A+++D NI GI DSKK+S +KRE L Sbjct: 6 LQYEKKYQE---YIVAGIDEAGRGPLAGPVVASAVVIDNTNIITGIKDSKKLSKRKRELL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ I S + SH ID+ NI +AT A A NL + P L+DG D Sbjct: 63 YEQITSNYIWSTAIISHTEIDEINILEATKKACSIAAANLTIKPEIVLVDGNMQFNDK-- 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++IKGD++SLSIAAASI+AK+TRDRLM ++P Y + + GY T +H Q I Sbjct: 121 RFVSIIKGDNLSLSIAAASIVAKITRDRLMLDLSTEFPQYLWYKNSGYGTKEHIQAINTH 180 Query: 192 GPSCIHRLTFR 202 G S HR +FR Sbjct: 181 GLSPYHRKSFR 191 >gi|328544974|ref|YP_004305083.1| ribonuclease HII [polymorphum gilvum SL003B-26A1] gi|326414716|gb|ADZ71779.1| Ribonuclease HII [Polymorphum gilvum SL003B-26A1] Length = 219 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 127/202 (62%), Gaps = 2/202 (0%) Query: 5 SIPERPHFE--LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 +P P F+ LE +AG+DE GRG AGPVV AA++LD +P G++DSK+ Sbjct: 11 DLPFGPSFDATLEERHAALFGGRLAGVDEAGRGPWAGPVVTAAVVLDYRRLPAGLDDSKR 70 Query: 63 ISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 +S +RE LYE+I +SA ++++SA ID+ NI ATL A+ AV+ L + LIDG Sbjct: 71 LSEVQREALYEEICASACVAVASACPTSIDRDNIRTATLAAMTRAVDALALTAGIVLIDG 130 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 R +P L + A++KGD L++AAASI+AKVTRDR+MR+ P YGF +H GY Sbjct: 131 RDVPPGLAGRGQALVKGDQRCLAVAAASIVAKVTRDRMMRLLDGCCPGYGFSAHKGYGVP 190 Query: 183 KHQQVIKEKGPSCIHRLTFRPL 204 H Q + GPS HRL+F+P+ Sbjct: 191 AHAQALLRLGPSPHHRLSFKPV 212 >gi|46579247|ref|YP_010055.1| ribonuclease HII [Desulfovibrio vulgaris str. Hildenborough] gi|81404983|sp|Q72DU5|RNH2_DESVH RecName: Full=Ribonuclease HII; Short=RNase HII gi|46448661|gb|AAS95314.1| ribonuclease HII [Desulfovibrio vulgaris str. Hildenborough] gi|311233076|gb|ADP85930.1| Ribonuclease H [Desulfovibrio vulgaris RCH1] Length = 220 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 87/212 (41%), Positives = 112/212 (52%), Gaps = 16/212 (7%) Query: 6 IPERPHFELEAMVREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P RP + + ++ PV AGIDE GRG LAGPVV AA+IL G+ DSKK++ Sbjct: 1 MPPRP----QRLAPVADLPPVFAGIDEAGRGCLAGPVVAAAVILPQEYALPGLTDSKKLT 56 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE L E I S A I + ID+ NI +AT A+ AV L+ P + LIDG Sbjct: 57 AARRESLAEGIRSCAVTWGIGVVWPRDIDRINILQATFRAMARAVRVLRQPPPAILIDGD 116 Query: 124 SI----------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + A+I GD +I+AASI+AK RDRLM ++Y YGF Sbjct: 117 KTLPPHVLTSLSCDGHLPTQRAIIGGDGCIPAISAASILAKTFRDRLMDTLDRRYHGYGF 176 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 H GY TA+H I GP HRLTFR +R Sbjct: 177 AKHKGYGTAEHLAAIAAHGPCAQHRLTFRGVR 208 >gi|299536766|ref|ZP_07050074.1| ribonuclease HII [Lysinibacillus fusiformis ZC1] gi|298727778|gb|EFI68345.1| ribonuclease HII [Lysinibacillus fusiformis ZC1] Length = 253 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 4/186 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSAI-I 81 +AG+DE GRG LAGPVV AA+IL N G+NDSK++S KR + A+ Sbjct: 68 TFIAGVDEAGRGPLAGPVVTAAVILPTNCEALVGLNDSKQLSKDKRNCFATLVKEHAVSY 127 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I S Q ID+ NI++AT ++ +VE+L P L+D ++ + ++IKGD+ Sbjct: 128 FIHFQSAQQIDELNIYEATKQSMKVSVESLSTKPDVVLVD--AMTLPITIPQDSIIKGDA 185 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SL+IAAASI+AK RD M +++P YGF H GY T +H + ++E GP+ HR +F Sbjct: 186 KSLAIAAASILAKTARDEYMEQLDEEFPMYGFGQHAGYGTKQHLKALEEFGPTIHHRKSF 245 Query: 202 RPLRNL 207 P++++ Sbjct: 246 EPIKSM 251 >gi|300870469|ref|YP_003785340.1| ribonuclease HII [Brachyspira pilosicoli 95/1000] gi|300688168|gb|ADK30839.1| ribonuclease HII (RNase HII) [Brachyspira pilosicoli 95/1000] Length = 221 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 83/201 (41%), Positives = 115/201 (57%), Gaps = 7/201 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKREE 70 E + + GIDEVGRG+L G V A+I+ ++I NDSKK++ KKREE Sbjct: 15 LHYEKYYLDLGYKYICGIDEVGRGSLFGEVTACAVIMPLDDDIIKEANDSKKLTAKKREE 74 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+ I A S+ S + IDK NI+ AT A+ AVE L + P LID I D Sbjct: 75 LYKIIIQKALSYSVYSVAANTIDKINIYNATKLAMLKAVEGLSIKPDILLIDAMKI--DT 132 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH---KKYPDYGFDSHVGYPTAKHQQ 186 + ++IKGD S SIA ASI+AKV+RD+ M I K+Y Y + GY T +H + Sbjct: 133 EIKQESIIKGDLKSYSIACASIVAKVSRDKAMNILSEKNKEYDKYKISKNKGYGTKEHIE 192 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 IK+ G S +HRL+F P++++ Sbjct: 193 AIKKYGASDLHRLSFEPIKSI 213 >gi|323484795|ref|ZP_08090152.1| ribonuclease HII [Clostridium symbiosum WAL-14163] gi|323401901|gb|EGA94242.1| ribonuclease HII [Clostridium symbiosum WAL-14163] Length = 219 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 83/198 (41%), Positives = 111/198 (56%), Gaps = 5/198 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E E + GIDE GRG LAGPVV AA +L + + +NDSKK+S ++REEL+ Sbjct: 21 EYERKYEE--YSVICGIDEAGRGPLAGPVVAAAAVLPKDAVILWLNDSKKLSERRREELF 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ + S ID+ NI +AT +A+ AV L P L D IP Sbjct: 79 LEIREKAVAYGVGIVSPAVIDEINILQATYEAMRQAVSQLPAEPDIFLNDAVMIPGINDK 138 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAAS++AKVTRD +M K YP+YGF H GY T H I+E Sbjct: 139 KQVRIIKGDAKSVSIAAASVLAKVTRDHMMEEYDKLYPEYGFAKHKGYGTKAHMDAIREF 198 Query: 192 GPSCIHRLTFRPLRNLSV 209 G IHR +F + + Sbjct: 199 GVCPIHRRSFLT--KMDL 214 >gi|203283974|ref|YP_002221714.1| ribonuclease H [Borrelia duttonii Ly] gi|238690551|sp|B5RKU7|RNH2_BORDL RecName: Full=Ribonuclease HII; Short=RNase HII gi|201083417|gb|ACH93008.1| ribonuclease H [Borrelia duttonii Ly] Length = 181 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 109/181 (60%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GPV+ AA+I N ++DSKK++ KRE L I +A + Sbjct: 1 MICGIDEVGRGCIFGPVLSAAVIFKSKPNFLNELDDSKKLTKTKREYLSALILENAYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S++ IDK NIH A+L A+ A + L + L+DG+ IP+ Q A+IKGDS+ Sbjct: 61 ADISNEIIDKINIHNASLLAMQIAYQKLNIECNLVLVDGKFIPKIQAKQIRAIIKGDSMI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP YG + GYPT +H+ IK+ G +HR +F+ Sbjct: 121 DEIKAASIIAKVQRDKLMVEYDKIYPLYGLKKNKGYPTKEHKDAIKKHGILSLHRKSFQL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|317486906|ref|ZP_07945716.1| ribonuclease HII [Bilophila wadsworthia 3_1_6] gi|316921781|gb|EFV43057.1| ribonuclease HII [Bilophila wadsworthia 3_1_6] Length = 237 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 77/191 (40%), Positives = 106/191 (55%), Gaps = 12/191 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 VAGIDE GRG LAGPVV AA+IL + G+ DSK +S +R+ L +I + A + Sbjct: 34 VAGIDEAGRGCLAGPVVAAAVILPEGAVIPGLADSKVLSPTRRDGLAAEIGAVALAWGLG 93 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG-----------RSIPEDLPCQA 133 ID+ NI +ATL A+ HA L+V P+ LIDG R+ + Sbjct: 94 VVWPPEIDRINILQATLKAMCHAASVLKVRPKGLLIDGNQTIPEPLFRQRAACWPSSPRQ 153 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 +++ GD++ I+AASIIAK RD LM +YP YGF H GY + +H ++E GP Sbjct: 154 KSIVDGDALVPVISAASIIAKTFRDMLMDKLDHRYPGYGFAKHKGYGSKEHFAALRELGP 213 Query: 194 SCIHRLTFRPL 204 +HR TFR + Sbjct: 214 CPMHRKTFRGV 224 >gi|255692962|ref|ZP_05416637.1| ribonuclease HII [Bacteroides finegoldii DSM 17565] gi|260621273|gb|EEX44144.1| ribonuclease HII [Bacteroides finegoldii DSM 17565] Length = 200 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPGDFKNELLNDSKQLTEKQRYALREVIQREAVAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L + P+ LIDG + ++KGD LS Sbjct: 73 VSPEEIDELNILRASFLAMHRAVDQLAIRPQHLLIDGNRFNKYPGIPHTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRAAIAERGTTPYHRMTF 188 >gi|282916494|ref|ZP_06324256.1| ribonuclease HII [Staphylococcus aureus subsp. aureus D139] gi|283770307|ref|ZP_06343199.1| ribonuclease HII [Staphylococcus aureus subsp. aureus H19] gi|282319934|gb|EFB50282.1| ribonuclease HII [Staphylococcus aureus subsp. aureus D139] gi|283460454|gb|EFC07544.1| ribonuclease HII [Staphylococcus aureus subsp. aureus H19] Length = 255 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 4/197 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++N + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|332284293|ref|YP_004416204.1| ribonuclease HII [Pusillimonas sp. T7-7] gi|330428246|gb|AEC19580.1| ribonuclease HII [Pusillimonas sp. T7-7] Length = 220 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 87/184 (47%), Positives = 113/184 (61%), Gaps = 1/184 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 VAGIDE GRG LAGPV AA+ILDP G++DSKK+S +RE L + A I+ Sbjct: 21 VAGIDEAGRGPLAGPVFAAAVILDPARPIKGLDDSKKLSPARREGLALAVREYALAWYIA 80 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SA+ + ID NI +AT+ A+ A E L + ALIDG +P+ LPC A A+I GD+ Sbjct: 81 SATVEEIDTLNILQATMLAMRRACEGLSLPLAQALIDGNRVPKGLPCAAQAIIGGDASVA 140 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AK RD + H+ YPDY FD H GY TA H ++ GP HR TF P+ Sbjct: 141 AISAASILAKTARDADCLLLHQAYPDYCFDQHKGYGTALHLARLQAYGPCPAHRRTFAPV 200 Query: 205 RNLS 208 + L Sbjct: 201 KRLL 204 >gi|329912123|ref|ZP_08275683.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480] gi|327545705|gb|EGF30849.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480] Length = 188 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 112/183 (61%), Gaps = 2/183 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 G+DE GRG LAGPV AA+ILDP + G+ DSKK++ +R+ L +I + A SI+ Sbjct: 2 CGVDEAGRGPLAGPVFAAAVILDPAHPIAGLRDSKKLTEARRDALAIEIKAHALAWSIAE 61 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 SH ID NI +A+L A+ AV+ L P ALIDG P + ++ A++ GD + Sbjct: 62 CSHHEIDAINILQASLLAMKRAVDTLPTTPTLALIDGNRCPV-MTVRSIAIVGGDDKVDA 120 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD + + H YPDY FD H GYPTA H + ++ G S +HR ++ P+R Sbjct: 121 ISAASILAKTARDAALVVLHADYPDYAFDRHKGYPTALHLERLRLHGVSPVHRRSYAPVR 180 Query: 206 NLS 208 L Sbjct: 181 RLL 183 >gi|74316817|ref|YP_314557.1| RNase HII [Thiobacillus denitrificans ATCC 25259] gi|97189444|sp|Q3SKM7|RNH2_THIDA RecName: Full=Ribonuclease HII; Short=RNase HII gi|74056312|gb|AAZ96752.1| ribonuclease H [Thiobacillus denitrificans ATCC 25259] Length = 204 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 78/180 (43%), Positives = 106/180 (58%), Gaps = 2/180 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 G+DE GRG LAGPVV AA++LDP G+ DSKK++ RE L ++I + A ++ Sbjct: 17 CGVDEAGRGPLAGPVVAAAVMLDPKRPIKGLRDSKKLTPAARERLADEIRARALAWCVAE 76 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS ID+ NI AT+ A+ AV + P +DG P + ++ AV++GD + Sbjct: 77 ASVAEIDRLNILHATMLAMQRAVAGMSHAPDDVWVDGDRCP-EWTWRSQAVVQGDDKVAA 135 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 IAAASI+AK RD LMR H+ YP YGF H+GY TA H +K G HR +F P+R Sbjct: 136 IAAASILAKTVRDELMRGLHEAYPLYGFAQHMGYATAAHLAALKANGACPHHRRSFAPVR 195 >gi|34540527|ref|NP_905006.1| ribonuclease HII [Porphyromonas gingivalis W83] gi|38605679|sp|Q51832|RNH2_PORGI RecName: Full=Ribonuclease HII; Short=RNase HII gi|34396840|gb|AAQ65905.1| ribonuclease HII [Porphyromonas gingivalis W83] Length = 201 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 74/179 (41%), Positives = 99/179 (55%), Gaps = 1/179 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA+IL + +NDSK++S K+R L I S I I Sbjct: 14 CGCDEAGRGCLAGPVYAAAVILPADFSHPLLNDSKQLSEKQRYTLRPVIESETIGWGIGI 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S Q ID+ NI +A+ A++ A+E L P LIDG ++ GD+ S Sbjct: 74 VSPQEIDEINILRASFLAMHRAIEQLPFRPERLLIDGNRFDPFEQIPHHCIVGGDARYRS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAASI+AK RD M +K +P YG++ + GYP+ H+ I+ G S HRLTFR + Sbjct: 134 IAAASILAKTYRDDSMLRLNKDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFRGV 192 >gi|307546380|ref|YP_003898859.1| ribonuclease HII [Halomonas elongata DSM 2581] gi|307218404|emb|CBV43674.1| ribonuclease HII [Halomonas elongata DSM 2581] Length = 203 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 85/203 (41%), Positives = 115/203 (56%), Gaps = 7/203 (3%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 S E P +E +AG+DEVGRG L GPVV AA+ILDP + G+ DSKK+S Sbjct: 2 SAKELPPLVIEYQ-----GERLAGVDEVGRGPLVGPVVAAAVILDPRDPIDGLTDSKKLS 56 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 K+RE L +I A S++ AS ID NI+ AT A+ A++ L L+DG Sbjct: 57 AKRRESLDAEIRERALAWSVAEASADEIDALNIYHATHLAMRRAIDALNPAAEYLLVDGN 116 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P AV+KGD+ +IAAASI+AKV RD M+ ++PDYGF H GYPT + Sbjct: 117 RLP-GHHVPGQAVVKGDARHAAIAAASILAKVARDAGMQTLDTRHPDYGFARHKGYPTRE 175 Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206 H ++ GP HR +F P++ Sbjct: 176 HLAALERLGPLPEHRRSFGPVKR 198 >gi|310641522|ref|YP_003946280.1| ribonuclease hii [Paenibacillus polymyxa SC2] gi|309246472|gb|ADO56039.1| Ribonuclease HII [Paenibacillus polymyxa SC2] Length = 229 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 86/192 (44%), Positives = 113/192 (58%), Gaps = 4/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E++ +AGIDEVGRG L G VV AA+IL + G++DSKK++ KKRE Sbjct: 26 LHYEKKCWEQSCERIAGIDEVGRGCLFGDVVAAAVILPVGELLEGVDDSKKLTDKKREAY 85 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE I AI + + + ID+ NI +A A+ AVE L V P L+D D+P Sbjct: 86 YELIMEKAIAVGVGHVDARMIDEINIKQAARLAMKKAVEALHVSPDYLLVDAEK--VDVP 143 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ S SIAAASIIAKVTRDRL + KYP+YG H GY T H++ I Sbjct: 144 IPQLSIIKGDANSQSIAAASIIAKVTRDRLCKGEWDAKYPEYGIGIHKGYATKLHREQIL 203 Query: 190 EKGPSCIHRLTF 201 GP+ +HR +F Sbjct: 204 ALGPTEMHRRSF 215 >gi|317152482|ref|YP_004120530.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2] gi|316942733|gb|ADU61784.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2] Length = 207 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 79/185 (42%), Positives = 105/185 (56%), Gaps = 5/185 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 +AG+DE GRG LAGPVV A IL G+NDSK++S KRE LY I S A+ ++ Sbjct: 11 IAGVDEAGRGCLAGPVVAGACILPQTYDLPGLNDSKQLSAAKRETLYPLIRSQAVAWAVG 70 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----PCQAFAVIKGD 140 + ID+ NI +AT A+ AV L++ PR IDG I VI GD Sbjct: 71 LSWPGEIDRVNILQATFLAMGRAVRALKLSPRFLRIDGNKIIPAHALGLGVSQEWVIGGD 130 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 +I+AAS++AK RDRLM +YP YG + H+GY T +H + + GP +HRLT Sbjct: 131 GSVPAISAASVLAKTFRDRLMVKLAARYPGYGLERHMGYGTKEHMEAVARLGPCAMHRLT 190 Query: 201 FRPLR 205 FR +R Sbjct: 191 FRGVR 195 >gi|329964524|ref|ZP_08301578.1| ribonuclease HII [Bacteroides fluxus YIT 12057] gi|328524924|gb|EGF51976.1| ribonuclease HII [Bacteroides fluxus YIT 12057] Length = 205 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S ID+ NI A+ A++ AV+ L + P+ L+DG + V+KGD LS Sbjct: 73 VSPGEIDQINILNASFLAMHRAVDQLNIRPQHLLVDGNRFKKYRDVPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNGLHEEYPYYDWNHNKGYPTKKHRAAIAERGTTPYHRMTF 188 >gi|167764134|ref|ZP_02436261.1| hypothetical protein BACSTE_02517 [Bacteroides stercoris ATCC 43183] gi|167698250|gb|EDS14829.1| hypothetical protein BACSTE_02517 [Bacteroides stercoris ATCC 43183] Length = 201 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S IDK NI A+ A++ AV+ LQ+ P+ LIDG + V+KGD LS Sbjct: 73 VSPGEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFKKYRDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H+++P Y ++ + GYPT KH+ I E+G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWNHNKGYPTKKHRAAIAERGTTPYHRMTF 188 >gi|237737692|ref|ZP_04568173.1| ribonuclease HII [Fusobacterium mortiferum ATCC 9817] gi|229419572|gb|EEO34619.1| ribonuclease HII [Fusobacterium mortiferum ATCC 9817] Length = 206 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 83/194 (42%), Positives = 113/194 (58%), Gaps = 10/194 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70 F+LE + G+DE GRG LAG VV AA+ L + INDSKK++ KKRE+ Sbjct: 9 FDLEK------GKEIIGVDEAGRGPLAGSVVAAAVKLKRYSEELQEINDSKKLTEKKREK 62 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL---IDGRSIPE 127 L++ I + + I AS Q ID+ NI AT A+ A+E L + + +DG Sbjct: 63 LFDIIMENFEVGIGIASVQEIDELNILNATFLAMRRAIEELDKKTNTDVLVLVDGNFKIR 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + + +IKGD+ SLSIAAASIIAKVTRDR + KKYP+Y F+ H GY T H++ Sbjct: 123 EYIGKQEPIIKGDAKSLSIAAASIIAKVTRDRQLVEEGKKYPEYHFEKHKGYGTKAHREA 182 Query: 188 IKEKGPSCIHRLTF 201 + + G + IHR TF Sbjct: 183 LLQYGVTPIHRKTF 196 >gi|218131835|ref|ZP_03460639.1| hypothetical protein BACEGG_03456 [Bacteroides eggerthii DSM 20697] gi|317474549|ref|ZP_07933823.1| ribonuclease HII [Bacteroides eggerthii 1_2_48FAA] gi|217986138|gb|EEC52477.1| hypothetical protein BACEGG_03456 [Bacteroides eggerthii DSM 20697] gi|316909230|gb|EFV30910.1| ribonuclease HII [Bacteroides eggerthii 1_2_48FAA] Length = 199 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 77/176 (43%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ LQ+ P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFKKYRELPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G S HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNHNKGYPTKKHRAAIAERGTSPYHRMTF 188 >gi|253731863|ref|ZP_04866028.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724273|gb|EES93002.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 255 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 4/197 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++N + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|46398977|gb|AAS92174.1| RNase H ribonuclease [Legionella pneumophila] Length = 191 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 79/187 (42%), Positives = 109/187 (58%), Gaps = 4/187 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A + Sbjct: 7 TLMAGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFA 64 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 A + ID+ NIH ATL A+ AVE L + P + ++DG + L A+++GDS+ Sbjct: 65 YGRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDG-AFTPQLNIPCKAIVQGDSL 123 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183 Query: 203 PLRNLSV 209 P+ +L + Sbjct: 184 PVADLIL 190 >gi|238022898|ref|ZP_04603324.1| hypothetical protein GCWU000324_02819 [Kingella oralis ATCC 51147] gi|237865706|gb|EEP66844.1| hypothetical protein GCWU000324_02819 [Kingella oralis ATCC 51147] Length = 200 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 73/183 (39%), Positives = 104/183 (56%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA++L + G+ DSKK+S KR+ L +I A +++S Sbjct: 11 AGVDEAGRGCLVGSVFAAAVMLPVHYDLPGLTDSKKLSEAKRDALAAQIKRQATVWAVAS 70 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ I + NI AT+ A+ AV L P IDG +P DL A AV+KGD+ + Sbjct: 71 ANPAEIQRLNILHATMLAMCRAVAALPRQPEKVWIDGNRVPPDLAVPAEAVVKGDAKIAA 130 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++AASI+AK RD M H+++P+YGF H GY TA H ++ G HR F P++ Sbjct: 131 VSAASILAKTARDAEMYALHERHPEYGFAQHKGYGTAAHLAALQRYGALPEHRADFAPVK 190 Query: 206 NLS 208 + Sbjct: 191 QIL 193 >gi|313204705|ref|YP_004043362.1| RNAse hii [Paludibacter propionicigenes WB4] gi|312444021|gb|ADQ80377.1| RNase HII [Paludibacter propionicigenes WB4] Length = 220 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 G DE GRG LAGPVV AA+IL + +NDSK++S ++R+ L I A ++ Sbjct: 14 CGCDEAGRGCLAGPVVAAAVILPADFDCPLLNDSKQLSEQERDTLRPIIEQQALAWGVAL 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ID+ NI A++ A++ A++ L + P ++DG ++KGDS LS Sbjct: 74 VDSGEIDEINILNASILAMHRAIDKLNIRPEFIIVDGNKFKSYADIPYQTIVKGDSKYLS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD +M+ H +YP Y +D + YPT KH+ I++ G + HRL++ Sbjct: 134 IAAASVLAKTHRDEMMQQLHAEYPHYDWDKNKAYPTVKHRNAIRKFGTTPYHRLSY 189 >gi|325299103|ref|YP_004259020.1| Ribonuclease H [Bacteroides salanitronis DSM 18170] gi|324318656|gb|ADY36547.1| Ribonuclease H [Bacteroides salanitronis DSM 18170] Length = 200 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 99/176 (56%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL +NDSKK++ ++R +L I S A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPSGYQNELLNDSKKLTERQRYKLRNIIESDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S ID+ NI A+ A++ AVE L V P+ LIDG V+KGD LS Sbjct: 73 VSPAEIDQINILNASFLAMHRAVEQLAVRPQHLLIDGNRFNPYPGIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H +YP Y + + GYPT KH++ I+ G + HR++F Sbjct: 133 IAAASILAKTYRDDYMNCLHDEYPLYDWKGNKGYPTRKHREAIRLYGTTPYHRMSF 188 >gi|253733518|ref|ZP_04867683.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH130] gi|253728572|gb|EES97301.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH130] Length = 255 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 4/197 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++N + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAYGIATSEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|313159708|gb|EFR59065.1| ribonuclease HII [Alistipes sp. HGB5] Length = 203 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA++L P+ +NDSK+++ + RE+L I A+ ++ + Sbjct: 17 AGCDEAGRGCLAGPVFAAAVMLPPDFHDPLLNDSKQMTERNREKLRTIIEHEAVAWAVEA 76 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI A+ + + A L P IDG L ++KGD Sbjct: 77 VSAERIDEINILNASFEGMSLAAARLDPAPGFLAIDGNRFRTRLELPYRCIVKGDGKYAD 136 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M +++P YG+ + GYPT +H+ I+E G + HRLTF Sbjct: 137 IAAASVLAKTHRDEYMLRLAEEFPQYGWRKNKGYPTREHRLAIREYGLTPHHRLTF 192 >gi|271963370|ref|YP_003337566.1| ribonuclease H [Streptosporangium roseum DSM 43021] gi|270506545|gb|ACZ84823.1| Ribonuclease H [Streptosporangium roseum DSM 43021] Length = 228 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + + + PVAG+DE GRGA AGP+VVAA++L G++DSK ++ +RE L Sbjct: 19 YGYERALARRGLGPVAGVDEAGRGACAGPLVVAAVVL--GRRIDGLSDSKLLTAARRESL 76 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+IT++A + ++ LP Sbjct: 77 YERITATAGAVSVVVIEPAEIDARGLHRSNIEGMRRAVARLSCDLGYVLTDGFPVPGLPV 136 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + V KGD ++ +AAASI+AKVTRDR+M ++P+YGF H GY T H++ ++ Sbjct: 137 PSLGVWKGDQVAACVAAASIVAKVTRDRMMTALGDRHPEYGFAVHKGYGTVGHRRALETY 196 Query: 192 GPSCIHRLTFRPLRN 206 GP HR +F + Sbjct: 197 GPCPAHRFSFATVAR 211 >gi|313896353|ref|ZP_07829906.1| ribonuclease HII [Selenomonas sp. oral taxon 137 str. F0430] gi|312975152|gb|EFR40614.1| ribonuclease HII [Selenomonas sp. oral taxon 137 str. F0430] Length = 258 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 88/187 (47%), Positives = 112/187 (59%), Gaps = 2/187 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 VAG+DE GRG LAGPV VAA IL +NDSKK+S K R EL+E+IT AI Sbjct: 68 GHILVAGVDEAGRGPLAGPVAVAAAILPKELYLPRLNDSKKLSAKVRAELFEEITEKAIA 127 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ ID+ NI +AT +Y AV L P L+D +P+ ++IKGD Sbjct: 128 YHVTLIDAAEIDRINILQATRCGMYEAVAALTPAPEEVLVDAVELPQLRM-PVQSIIKGD 186 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + S SIAAASI+AKVTRDRLM +YP YGF H GY TA+H I+ G + IHR T Sbjct: 187 AKSASIAAASILAKVTRDRLMERYDTEYPGYGFAGHKGYGTAEHIAAIRALGVTPIHRRT 246 Query: 201 FRPLRNL 207 F P+R++ Sbjct: 247 FEPIRSM 253 >gi|46398973|gb|AAS92172.1| RNase H ribonuclease [Legionella pneumophila] gi|46398975|gb|AAS92173.1| RNase H ribonuclease [Legionella pneumophila] Length = 191 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 79/187 (42%), Positives = 109/187 (58%), Gaps = 4/187 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A + Sbjct: 7 TLMAGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAVRIKEEALAFA 64 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 A + ID+ NIH ATL A+ AVE L + P + ++DG + L A+++GDS+ Sbjct: 65 YGRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDG-AFTPQLNIPCKAIVQGDSL 123 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ Sbjct: 124 IPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYS 183 Query: 203 PLRNLSV 209 P+ +L + Sbjct: 184 PVADLIL 190 >gi|282859032|ref|ZP_06268168.1| ribonuclease HII [Prevotella bivia JCVIHMP010] gi|282588200|gb|EFB93369.1| ribonuclease HII [Prevotella bivia JCVIHMP010] Length = 201 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL N +NDSK++S K R L ++I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPENYHNDRLNDSKQLSAKARYALRKEIERDAMAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + IDK NI A++ A++ A++ L + P + ++DG +IKGD LS Sbjct: 73 VTPAEIDKINILNASILAMHRALDQLTLRPEAIIVDGNRFKAYHDIPHTTIIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M K+YP Y + ++GYPT H+ I + G + HR ++ Sbjct: 133 IAAASILAKTYRDDYMLKLAKEYPIYDWQHNMGYPTKAHRAAIAQYGITPYHRKSY 188 >gi|257126162|ref|YP_003164276.1| ribonuclease H [Leptotrichia buccalis C-1013-b] gi|257050101|gb|ACV39285.1| Ribonuclease H [Leptotrichia buccalis C-1013-b] Length = 214 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 115/195 (58%), Gaps = 5/195 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKI 75 EK V G+DE GRG LAGPVV A+I+ + INDSKK++ KKRE L+E I Sbjct: 15 EFDEKYNKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPELQEINDSKKLTEKKRERLFEAI 74 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRSIPEDLPCQA 133 + I+ I AS + ID+ NI AT A+ A+ + L+DG + + + Sbjct: 75 EKNCIVGIGIASEKEIDEMNILNATFLAMRRAINQVAEKSAFDIVLVDGNHLIREYEGEQ 134 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGDS SL+IA ASI+AKVTRDR++ K++P+Y F+ H GY T KH++++ EKG Sbjct: 135 ECIVKGDSKSLAIATASIVAKVTRDRMLCEIAKEFPEYQFEKHKGYGTKKHREILLEKGA 194 Query: 194 SCIHRLTFRPLRNLS 208 HR TF L+ + Sbjct: 195 CRYHRKTF--LKKIL 207 >gi|119510873|ref|ZP_01629997.1| Ribonuclease HII/HIII [Nodularia spumigena CCY9414] gi|119464482|gb|EAW45395.1| Ribonuclease HII/HIII [Nodularia spumigena CCY9414] Length = 244 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 87/201 (43%), Positives = 116/201 (57%), Gaps = 5/201 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISH 65 P +E VAGIDEVGRGAL GPVV AA+IL P + I DSKK+S Sbjct: 41 PGSAVEGSSLSTIPGLVAGIDEVGRGALFGPVVAAAVILPACALPKLMAAEIKDSKKLSS 100 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +R +L ++I A +I AS ID+ NI +ATL A+ AV L+V P+ L+DG Sbjct: 101 SRRTQLSQQICDLATDWNIGFASSAEIDQINILQATLLAMRRAVLKLKVQPQLCLVDGNQ 160 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +DL ++KGD SL+IAAASI+AKV RD L+ KYP Y + GY + KH Sbjct: 161 PIKDLLIPQETIVKGDERSLTIAAASIVAKVWRDELVMRLALKYPLYNLKDNKGYGSQKH 220 Query: 185 QQVIKEKGPSCIHRLTFRPLR 205 +++ GPS +HR +FRP + Sbjct: 221 LVALQKYGPSRLHRKSFRPCQ 241 >gi|325266705|ref|ZP_08133381.1| ribonuclease HII [Kingella denitrificans ATCC 33394] gi|324981814|gb|EGC17450.1| ribonuclease HII [Kingella denitrificans ATCC 33394] Length = 202 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 104/180 (57%), Gaps = 1/180 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL + G+ DSKK+S KKR+EL +I + A I+ Sbjct: 13 AGVDEAGRGCLVGSVFAAAVILPAHFDLRGLTDSKKLSEKKRDELAVQIKAQAAAYCIAR 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI AT+ A+ AV+ L+ P IDG +P DL A V+KGD+ + Sbjct: 73 ADVGEIAQLNILHATMLAMKRAVQGLEKQPAKVWIDGNRMPPDLGVPAECVVKGDAKIAA 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AAS++AKV RD M H++YP YGF H GY TA H + + G HR F P++ Sbjct: 133 ISAASVLAKVARDAEMYALHERYPQYGFAQHKGYGTAAHLAALAQFGALPEHRADFAPVK 192 >gi|115526417|ref|YP_783328.1| ribonuclease HII [Rhodopseudomonas palustris BisA53] gi|122294758|sp|Q07I86|RNH2_RHOP5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|115520364|gb|ABJ08348.1| RNase HII [Rhodopseudomonas palustris BisA53] Length = 278 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 125/196 (63%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP IP G++DSKK++ +KR Sbjct: 56 PPSFRRERALLKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKKLTAEKR 115 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L+E+I ++A +++ AS I++ NI +A+L A+ AV+ L P+ +DGR Sbjct: 116 EALFEEICATASFAVAYASPARIERDNILRASLWALARAVQALPEPPKHVFVDGRD-KII 174 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 PC AVI GD++ LSIAAASIIAKV RDRLM + P YGFD H GY +H + Sbjct: 175 TPCDCDAVIGGDALVLSIAAASIIAKVARDRLMCRLAEDCPGYGFDHHKGYGVPEHLAAL 234 Query: 189 KEKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 235 DRLGPTKHHRKLFAPV 250 >gi|256831070|ref|YP_003159798.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028] gi|256580246|gb|ACU91382.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028] Length = 207 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 104/179 (58%), Gaps = 2/179 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG LAGPVV A+IL P+ G+ DSKK+S ++R L + I + A+ ++ Sbjct: 16 AGVDEAGRGCLAGPVVAGAVILPPDFDLPGLTDSKKLSSRRRVVLAQAIKAQAVSWALGF 75 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI +A+L A+ AVE L+V P L+DG V+ GD++ Sbjct: 76 SWPGEIDRINILQASLAAMARAVEALRVSPGLVLVDGN-QRFPSSLPQKTVVGGDALHPC 134 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AK RD L+ ++YP YG H GY T H ++ GPS HR++FR + Sbjct: 135 ISAASILAKTFRDDLLLCMDQRYPGYGLAVHKGYGTKAHLDALRRLGPSPAHRVSFRGV 193 >gi|223986426|ref|ZP_03636431.1| hypothetical protein HOLDEFILI_03743 [Holdemania filiformis DSM 12042] gi|223961622|gb|EEF66129.1| hypothetical protein HOLDEFILI_03743 [Holdemania filiformis DSM 12042] Length = 207 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 71/198 (35%), Positives = 102/198 (51%), Gaps = 5/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E ++ V GIDE GRG +AGP+VVA + D I DSK +S KKRE+L Sbjct: 7 LEYERSFWDQG-KHVVGIDEAGRGPIAGPLVVAGAVFDIGYANSEIYDSKALSEKKREKL 65 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A I + + ID NI++AT A+ + A++ Sbjct: 66 FSLILREARCYKIKIVTPEEIDTLNIYRATQKAMEEIACEINAE---AVLTDAMPLLHCS 122 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++IKGD SLSIAA SI+AKV RD +M + YPDYGF H GYPT H + +++ Sbjct: 123 KPTLSIIKGDQKSLSIAAGSILAKVVRDHIMLGYDRLYPDYGFARHKGYPTKAHLEAMEK 182 Query: 191 KGPSCIHRLTFRPLRNLS 208 G +R ++ P+ ++ Sbjct: 183 YGVLPFYRKSYGPVARMN 200 >gi|67920299|ref|ZP_00513819.1| Ribonuclease H [Crocosphaera watsonii WH 8501] gi|67857783|gb|EAM53022.1| Ribonuclease H [Crocosphaera watsonii WH 8501] Length = 196 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 75/191 (39%), Positives = 108/191 (56%), Gaps = 5/191 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELY 72 + + +AG+DEVGRG L GPVV AA++ + G+ DSK++S K+RE L Sbjct: 4 QLFSDSQILIAGVDEVGRGCLFGPVVAAAVVFEKAAISQLPEIGVKDSKQLSAKRREILA 63 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + AI IS AS + ID+ NI A+L A+ +V L V P L+DG ++ Sbjct: 64 TEIKNRAISYYISYASAREIDRLNILNASLLAMQRSVTKLSVTPELCLVDGNKKIPNITI 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +I GD S IAAASI+AKV RD+L+ KYP Y +++ GY T KH+ ++E Sbjct: 124 PQETIIGGDRTSPIIAAASILAKVWRDKLIIRLATKYPHYDLENNKGYGTKKHRLALQEY 183 Query: 192 GPSCIHRLTFR 202 P HR +F+ Sbjct: 184 APCFHHRHSFK 194 >gi|332292284|ref|YP_004430893.1| Ribonuclease H [Krokinobacter diaphorus 4H-3-7-5] gi|332170370|gb|AEE19625.1| Ribonuclease H [Krokinobacter diaphorus 4H-3-7-5] Length = 212 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 8/184 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA++L + I + DSK ++ KKRE L I AI I + Sbjct: 13 CGTDEAGRGCLAGPVTAAAVMLPDDFINEILTDSKLLTEKKRELLKPIIEEQAIAIGFAH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIK 138 ID NI A++ ++ ++E++ Q P+ L+DG VIK Sbjct: 73 VMMSEIDDINILNASILGMHRSIESMIGTLSRKQKKPQHILVDGNRFKPFPKIDHTTVIK 132 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD L IAAASIIAK RD M + H+++P Y + + GYPT +H++ I+ G + HR Sbjct: 133 GDGKYLPIAAASIIAKTARDEYMNLIHEEFPMYNWKKNKGYPTKEHREAIRRYGITKYHR 192 Query: 199 LTFR 202 +F+ Sbjct: 193 KSFK 196 >gi|260889965|ref|ZP_05901228.1| ribonuclease HII [Leptotrichia hofstadii F0254] gi|260860571|gb|EEX75071.1| ribonuclease HII [Leptotrichia hofstadii F0254] Length = 198 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 115/195 (58%), Gaps = 5/195 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKI 75 EK V G+DE GRG LAGPVV A+I+ + INDSKK++ KKRE L+E I Sbjct: 2 EFDEKYNKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPELQEINDSKKLTEKKRERLFEAI 61 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRSIPEDLPCQA 133 + I+ I AS + ID+ NI AT A+ A+ + L+DG + + + Sbjct: 62 EKNCIVGIGIASEKEIDEMNILNATFLAMRRAINQVAEKSAFDIVLVDGNHLIREYEGEQ 121 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGDS SL+IA ASI+AKVTRDR++ K++P+Y F+ H GY T KH+Q++ EKG Sbjct: 122 ECIVKGDSKSLAIATASIVAKVTRDRILCEIAKEFPEYEFEKHKGYGTKKHRQILLEKGA 181 Query: 194 SCIHRLTFRPLRNLS 208 HR TF L+ + Sbjct: 182 CKYHRKTF--LKKIL 194 >gi|326798587|ref|YP_004316406.1| ribonuclease H [Sphingobacterium sp. 21] gi|326549351|gb|ADZ77736.1| Ribonuclease H [Sphingobacterium sp. 21] Length = 200 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPV AA+I + +NDSK +S +R +L E I + A +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVIFSSSFKHGILNDSKILSAAQRYDLREMIENEALAFAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID+ NI A+ A++ A++ L++ L+DG VIKGD LS Sbjct: 73 ASAEEIDQINILNASFLAMHRALDALKMQAEYILVDGNRFRRYQNIPHQCVIKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M ++P+Y + + GYPT +H+ + + G + HR TFR Sbjct: 133 IAAASILAKTYRDDYMDNLANEHPEYDWLKNKGYPTKRHRDAVLKYGLTPHHRKTFR 189 >gi|323441022|gb|EGA98729.1| ribonuclease HII [Staphylococcus aureus O11] gi|323442339|gb|EGA99969.1| ribonuclease HII [Staphylococcus aureus O46] Length = 255 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 4/197 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++N + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|302332850|gb|ADL23043.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus JKD6159] Length = 255 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 4/197 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++N + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|288818751|ref|YP_003433099.1| ribonuclease HII [Hydrogenobacter thermophilus TK-6] gi|288788151|dbj|BAI69898.1| ribonuclease HII [Hydrogenobacter thermophilus TK-6] gi|308752338|gb|ADO45821.1| Ribonuclease H [Hydrogenobacter thermophilus TK-6] Length = 198 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 85/194 (43%), Positives = 112/194 (57%), Gaps = 5/194 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E EK + VAG+DE GRG LAGPVV A+IL P PF DSK++S ++REE Y Sbjct: 3 EYELPFWEKGL-LVAGVDEAGRGPLAGPVVACALILPPFTEPFIDRDSKRMSAREREEAY 61 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I S AI I + ID+ NIH+A A+ A+E+L+ + D + Sbjct: 62 ELIKSKAIAIGTAVVDSVVIDRINIHRAVKLAMKRALEDLKHPFDVVITDFVKLEGYNCL 121 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 KGD SLS A AS++AKV RDR+M HK +P Y F H GYPT +H+++IK Sbjct: 122 PLV---KGDEKSLSCACASVVAKVLRDRIMEHYHKVFPQYEFAQHKGYPTRRHRELIKTY 178 Query: 192 GPSCIHRLTFRPLR 205 G + IHR +F+ LR Sbjct: 179 GFTEIHRRSFKTLR 192 >gi|295687798|ref|YP_003591491.1| Ribonuclease H [Caulobacter segnis ATCC 21756] gi|295429701|gb|ADG08873.1| Ribonuclease H [Caulobacter segnis ATCC 21756] Length = 209 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 88/185 (47%), Positives = 114/185 (61%), Gaps = 2/185 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 PV G+DE GRG AGPV AA+ILDP+ +P G+NDSKK++ K R L E+I + AI Sbjct: 8 GQGPVCGVDEAGRGPWAGPVSAAAVILDPDRVPKGLNDSKKLTAKARAALEEEIKAVAIA 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + AS + I ++NI AT A+ A+E L V P AL+DG C+ V+KGD Sbjct: 68 WCVDMASIEEIAEYNILHATGRAMCRAIEGLSVTPAIALVDGNYRFPLP-CEIKTVVKGD 126 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S+S SIAAASI+AK RDRLM YP YGF SH GY H + + + GPS IHRL Sbjct: 127 SLSCSIAAASILAKEARDRLMIEMDAVYPGYGFASHKGYHARIHVEGLVKLGPSPIHRLG 186 Query: 201 FRPLR 205 + P++ Sbjct: 187 WAPVK 191 >gi|242277680|ref|YP_002989809.1| ribonuclease H [Desulfovibrio salexigens DSM 2638] gi|242120574|gb|ACS78270.1| Ribonuclease H [Desulfovibrio salexigens DSM 2638] Length = 218 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 73/185 (39%), Positives = 103/185 (55%), Gaps = 7/185 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AGIDE GRG LAGPVV A+IL G+ DSKK+ R+ L +I A ++ Sbjct: 17 AGIDEAGRGCLAGPVVAGAVILPEEYDLPGLTDSKKLDEAARDRLAVEIKKQAVCWALGV 76 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ------AFAVIKG 139 + Q +D+ NI +AT A+ +V +L+V P+ ++DG AV+KG Sbjct: 77 SRAQVVDQINILQATFRAMGRSVLHLKVKPQMLMVDGNKTIPAPHLNGVAGFRQEAVVKG 136 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D +I+AASI+AK RD+LM K+Y YGF+ H GY T H +KE GP +HR+ Sbjct: 137 DLKIPAISAASILAKTFRDKLMVQLAKRYAAYGFEIHKGYGTKVHLDALKEHGPCAVHRM 196 Query: 200 TFRPL 204 TF+ + Sbjct: 197 TFKGV 201 >gi|308068634|ref|YP_003870239.1| ribonuclease HII [Paenibacillus polymyxa E681] gi|305857913|gb|ADM69701.1| Ribonuclease HII (RNase HII) [Paenibacillus polymyxa E681] Length = 215 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 84/192 (43%), Positives = 110/192 (57%), Gaps = 4/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E E++ +AGIDEVGRG L G VV AA+IL + G++DSKK++ KKRE Sbjct: 12 LHYEKKCWEQSCERIAGIDEVGRGCLFGDVVAAAVILPVGELLEGVDDSKKLTDKKREAY 71 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 YE I AI + + ID NI +A A+ A+E L V P L+D D+ Sbjct: 72 YELIMEKAIAVGVGYVDAHTIDDINIKQAARLAMKQAIEALHVSPDYLLVDAEK--VDVS 129 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMR-IAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++IKGD+ S SIAAASIIAKVTRDRL + KYP+YG H GY T H++ I Sbjct: 130 IPQLSIIKGDANSQSIAAASIIAKVTRDRLCKGEWDAKYPEYGIGIHKGYATKLHREQIL 189 Query: 190 EKGPSCIHRLTF 201 GP+ +HR +F Sbjct: 190 ALGPTEMHRRSF 201 >gi|291514820|emb|CBK64030.1| RNase HII [Alistipes shahii WAL 8301] Length = 199 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 68/176 (38%), Positives = 98/176 (55%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA++L P+ +NDSK+++ + RE+L I A+ ++ + Sbjct: 13 AGCDEAGRGCLAGPVFAAAVMLPPDFHDPLLNDSKQMTERNREKLRAVIEREAVAWAVEA 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S ID+ NI A+ + + AV L P IDG L ++KGD Sbjct: 73 VSAARIDEINILNASFEGMSLAVARLDPAPAFLAIDGNRFRTRLEIPWRCIVKGDGKYAD 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M +++P YG+ + GYPT +H+ I+E G + HRLTF Sbjct: 133 IAAASVLAKTHRDEYMLCIAEEFPQYGWAKNKGYPTREHRLAIREHGLTPHHRLTF 188 >gi|120603190|ref|YP_967590.1| ribonuclease HII [Desulfovibrio vulgaris DP4] gi|166225183|sp|A1VFE7|RNH2_DESVV RecName: Full=Ribonuclease HII; Short=RNase HII gi|120563419|gb|ABM29163.1| RNase HII [Desulfovibrio vulgaris DP4] Length = 220 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 86/212 (40%), Positives = 112/212 (52%), Gaps = 16/212 (7%) Query: 6 IPERPHFELEAMVREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P RP + + ++ PV AGIDE GRG LAGPVV AA+IL G+ DSKK++ Sbjct: 1 MPPRP----QRLAPVADLPPVFAGIDEAGRGCLAGPVVAAAVILPQEYTLPGLTDSKKLT 56 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE L E I S A + + ID+ NI +AT A+ AV L+ P + LIDG Sbjct: 57 AARRESLAEGIRSCAVTWGLGVVWPRDIDRINILQATFRAMARAVRVLRQPPPALLIDGD 116 Query: 124 SI----------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + A+I GD +I+AASI+AK RDRLM ++Y YGF Sbjct: 117 KTLPPHVLTTLSCDGHLPTQRAIIGGDGCIPAISAASILAKTFRDRLMDTLDRRYHGYGF 176 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 H GY TA+H I GP HRLTFR +R Sbjct: 177 AKHKGYGTAEHLAAIAAHGPCAQHRLTFRGVR 208 >gi|295100799|emb|CBK98344.1| RNase HII [Faecalibacterium prausnitzii L2-6] Length = 214 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 85/191 (44%), Positives = 111/191 (58%), Gaps = 2/191 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + +A +R + AG+DE GRG L GPV VAA ILDP +GINDSKK+S KKRE L Sbjct: 14 YAYDADIRAQ-YGCFAGVDEAGRGPLCGPVCVAACILDPEAPVYGINDSKKLSEKKREAL 72 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I A I ID+ NI AT+ + AVE L ++P L+DG IP L Sbjct: 73 FDQIVEKALAYRIVFVGPDIIDRDNILNATMGGMRQAVEGLDIVPNLVLVDGNRIPAGLT 132 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A V+KGD+ S SI AASI+AKV+RDR M K+YP Y H GY T H ++I + Sbjct: 133 MPAQPVVKGDATSASIGAASILAKVSRDRYMLELDKQYPQYQLAKHKGYGTKLHYELIAQ 192 Query: 191 KGPSCIHRLTF 201 G +R +F Sbjct: 193 YGIQPFYRRSF 203 >gi|49483407|ref|YP_040631.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA252] gi|257425298|ref|ZP_05601723.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 55/2053] gi|257427958|ref|ZP_05604356.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 65-1322] gi|257430591|ref|ZP_05606973.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 68-397] gi|257433352|ref|ZP_05609710.1| ribonuclease HII [Staphylococcus aureus subsp. aureus E1410] gi|257436194|ref|ZP_05612241.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M876] gi|282903799|ref|ZP_06311687.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C160] gi|282905562|ref|ZP_06313417.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Btn1260] gi|282908537|ref|ZP_06316367.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910816|ref|ZP_06318619.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WBG10049] gi|282914021|ref|ZP_06321808.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M899] gi|282918943|ref|ZP_06326678.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C427] gi|282924066|ref|ZP_06331742.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C101] gi|283957987|ref|ZP_06375438.1| ribonuclease HII [Staphylococcus aureus subsp. aureus A017934/97] gi|293501052|ref|ZP_06666903.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 58-424] gi|293510014|ref|ZP_06668722.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M809] gi|293526601|ref|ZP_06671286.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M1015] gi|295427731|ref|ZP_06820363.1| ribonuclease HII [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591311|ref|ZP_06949949.1| ribonuclease H [Staphylococcus aureus subsp. aureus MN8] gi|56749568|sp|Q6GHJ1|RNH2_STAAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|49241536|emb|CAG40222.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA252] gi|257271755|gb|EEV03893.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 55/2053] gi|257274799|gb|EEV06286.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 65-1322] gi|257278719|gb|EEV09338.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 68-397] gi|257281445|gb|EEV11582.1| ribonuclease HII [Staphylococcus aureus subsp. aureus E1410] gi|257284476|gb|EEV14596.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M876] gi|282314038|gb|EFB44430.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C101] gi|282316753|gb|EFB47127.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C427] gi|282322089|gb|EFB52413.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M899] gi|282325421|gb|EFB55730.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WBG10049] gi|282327599|gb|EFB57882.1| ribonuclease HII [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330854|gb|EFB60368.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Btn1260] gi|282595417|gb|EFC00381.1| ribonuclease HII [Staphylococcus aureus subsp. aureus C160] gi|283790136|gb|EFC28953.1| ribonuclease HII [Staphylococcus aureus subsp. aureus A017934/97] gi|290920673|gb|EFD97736.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M1015] gi|291096057|gb|EFE26318.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 58-424] gi|291466958|gb|EFF09476.1| ribonuclease HII [Staphylococcus aureus subsp. aureus M809] gi|295128089|gb|EFG57723.1| ribonuclease HII [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576197|gb|EFH94913.1| ribonuclease H [Staphylococcus aureus subsp. aureus MN8] gi|312438378|gb|ADQ77449.1| ribonuclease HII [Staphylococcus aureus subsp. aureus TCH60] gi|315194133|gb|EFU24526.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus CGS00] Length = 255 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + +N + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILTENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|15924234|ref|NP_371768.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu50] gi|15926827|ref|NP_374360.1| ribonuclease HII [Staphylococcus aureus subsp. aureus N315] gi|148267735|ref|YP_001246678.1| ribonuclease HII [Staphylococcus aureus subsp. aureus JH9] gi|150393793|ref|YP_001316468.1| ribonuclease HII [Staphylococcus aureus subsp. aureus JH1] gi|156979565|ref|YP_001441824.1| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu3] gi|255006031|ref|ZP_05144632.2| ribonuclease HII [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795700|ref|ZP_05644679.1| ribonuclease HII [Staphylococcus aureus A9781] gi|258415924|ref|ZP_05682194.1| ribonuclease HII [Staphylococcus aureus A9763] gi|258421686|ref|ZP_05684610.1| ribonuclease HII [Staphylococcus aureus A9719] gi|258434842|ref|ZP_05688916.1| ribonuclease HII [Staphylococcus aureus A9299] gi|258444582|ref|ZP_05692911.1| ribonuclease HII [Staphylococcus aureus A8115] gi|258447585|ref|ZP_05695729.1| ribonuclease HII [Staphylococcus aureus A6300] gi|258449427|ref|ZP_05697530.1| ribonuclease HII [Staphylococcus aureus A6224] gi|258454806|ref|ZP_05702770.1| ribonuclease HII [Staphylococcus aureus A5937] gi|269202860|ref|YP_003282129.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED98] gi|282892732|ref|ZP_06300967.1| ribonuclease HII [Staphylococcus aureus A8117] gi|282927586|ref|ZP_06335202.1| ribonuclease HII [Staphylococcus aureus A10102] gi|295406179|ref|ZP_06815986.1| ribonuclease HII [Staphylococcus aureus A8819] gi|296274801|ref|ZP_06857308.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MR1] gi|297244407|ref|ZP_06928290.1| ribonuclease HII [Staphylococcus aureus A8796] gi|54039252|sp|P66676|RNH2_STAAN RecName: Full=Ribonuclease HII; Short=RNase HII gi|54042175|sp|P66675|RNH2_STAAM RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226657|sp|A7X1L7|RNH2_STAA1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043663|sp|A6U163|RNH2_STAA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043664|sp|A5ISC9|RNH2_STAA9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|13701044|dbj|BAB42339.1| RNase HII [Staphylococcus aureus subsp. aureus N315] gi|14247014|dbj|BAB57406.1| RNase HII [Staphylococcus aureus subsp. aureus Mu50] gi|147740804|gb|ABQ49102.1| RNase HII [Staphylococcus aureus subsp. aureus JH9] gi|149946245|gb|ABR52181.1| Ribonuclease H [Staphylococcus aureus subsp. aureus JH1] gi|156721700|dbj|BAF78117.1| RNase HII [Staphylococcus aureus subsp. aureus Mu3] gi|257789672|gb|EEV28012.1| ribonuclease HII [Staphylococcus aureus A9781] gi|257839260|gb|EEV63734.1| ribonuclease HII [Staphylococcus aureus A9763] gi|257842372|gb|EEV66797.1| ribonuclease HII [Staphylococcus aureus A9719] gi|257849203|gb|EEV73185.1| ribonuclease HII [Staphylococcus aureus A9299] gi|257850075|gb|EEV74028.1| ribonuclease HII [Staphylococcus aureus A8115] gi|257853776|gb|EEV76735.1| ribonuclease HII [Staphylococcus aureus A6300] gi|257857415|gb|EEV80313.1| ribonuclease HII [Staphylococcus aureus A6224] gi|257863189|gb|EEV85953.1| ribonuclease HII [Staphylococcus aureus A5937] gi|262075150|gb|ACY11123.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ED98] gi|282590589|gb|EFB95666.1| ribonuclease HII [Staphylococcus aureus A10102] gi|282764729|gb|EFC04854.1| ribonuclease HII [Staphylococcus aureus A8117] gi|285816926|gb|ADC37413.1| Ribonuclease HII [Staphylococcus aureus 04-02981] gi|294968767|gb|EFG44789.1| ribonuclease HII [Staphylococcus aureus A8819] gi|297178437|gb|EFH37683.1| ribonuclease HII [Staphylococcus aureus A8796] gi|312829638|emb|CBX34480.1| ribonuclease HII (RNase HII) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131038|gb|EFT87022.1| RNase HII [Staphylococcus aureus subsp. aureus CGS03] gi|329727171|gb|EGG63627.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21172] Length = 255 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 14 LEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPITKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|57651813|ref|YP_186119.1| ribonuclease HII [Staphylococcus aureus subsp. aureus COL] gi|87160122|ref|YP_493834.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194952|ref|YP_499752.1| ribonuclease HII [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221366|ref|YP_001332188.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. Newman] gi|161509410|ref|YP_001575069.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142034|ref|ZP_03566527.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452543|ref|ZP_05700549.1| ribonuclease HII [Staphylococcus aureus A5948] gi|262048142|ref|ZP_06021029.1| RNase HII [Staphylococcus aureus D30] gi|282920028|ref|ZP_06327757.1| ribonuclease HII [Staphylococcus aureus A9765] gi|284024237|ref|ZP_06378635.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 132] gi|294848239|ref|ZP_06788986.1| ribonuclease HII [Staphylococcus aureus A9754] gi|304381192|ref|ZP_07363845.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|71153704|sp|Q5HGI8|RNH2_STAAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|97189306|sp|Q2FHJ4|RNH2_STAA3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|122539702|sp|Q2FZ38|RNH2_STAA8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|172048860|sp|A6QGE4|RNH2_STAAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043665|sp|A8Z3S4|RNH2_STAAT RecName: Full=Ribonuclease HII; Short=RNase HII gi|57285999|gb|AAW38093.1| ribonuclease HII [Staphylococcus aureus subsp. aureus COL] gi|87126096|gb|ABD20610.1| ribonuclease HII [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202510|gb|ABD30320.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374166|dbj|BAF67426.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. Newman] gi|160368219|gb|ABX29190.1| ribonuclease H [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859761|gb|EEV82603.1| ribonuclease HII [Staphylococcus aureus A5948] gi|259163708|gb|EEW48263.1| RNase HII [Staphylococcus aureus D30] gi|269940736|emb|CBI49117.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus TW20] gi|282594744|gb|EFB99728.1| ribonuclease HII [Staphylococcus aureus A9765] gi|294825039|gb|EFG41461.1| ribonuclease HII [Staphylococcus aureus A9754] gi|302751067|gb|ADL65244.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340175|gb|EFM06116.1| ribonuclease HII [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198484|gb|EFU28813.1| ribonuclease H [Staphylococcus aureus subsp. aureus CGS01] gi|320140940|gb|EFW32787.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA131] gi|320144345|gb|EFW36111.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MRSA177] gi|329313913|gb|AEB88326.1| Ribonuclease HII [Staphylococcus aureus subsp. aureus T0131] gi|329728949|gb|EGG65363.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21189] Length = 255 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 14 LEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|24373211|ref|NP_717254.1| ribonuclease HII [Shewanella oneidensis MR-1] gi|39932406|sp|Q8EGG1|RNH2_SHEON RecName: Full=Ribonuclease HII; Short=RNase HII gi|24347435|gb|AAN54698.1|AE015610_2 ribonuclease HII [Shewanella oneidensis MR-1] Length = 209 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 86/190 (45%), Positives = 114/190 (60%), Gaps = 5/190 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ K+RE L+++I A Sbjct: 18 SLVAGVDEVGRGPLVGDVVTAAVILDPNRPILGLNDSKKLTEKRREALFDEICEKALSFH 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS----IPEDLPCQAFAVIK 138 + AS ID+ NI AT+ A+ AV L++ P L+DG + L + ++IK Sbjct: 78 VGRASPAEIDELNILHATMLAMQRAVSGLKLTPALVLVDGNRSPAFTHQGLSLASHSIIK 137 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + SI+AASIIAKVTRDR M YP YGF H GYPT H + I E G +R Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYR 197 Query: 199 LTFRPLRNLS 208 +F+P++ L Sbjct: 198 KSFKPVKALL 207 >gi|21282856|ref|NP_645944.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MW2] gi|49486083|ref|YP_043304.1| ribonuclease HII [Staphylococcus aureus subsp. aureus MSSA476] gi|297208110|ref|ZP_06924541.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912191|ref|ZP_07129634.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH70] gi|38258614|sp|Q8NX02|RNH2_STAAW RecName: Full=Ribonuclease HII; Short=RNase HII gi|56749521|sp|Q6G9W9|RNH2_STAAS RecName: Full=Ribonuclease HII; Short=RNase HII gi|21204295|dbj|BAB94992.1| RNase HII [Staphylococcus aureus subsp. aureus MW2] gi|49244526|emb|CAG42955.1| putative ribonuclease HII [Staphylococcus aureus subsp. aureus MSSA476] gi|296887353|gb|EFH26255.1| ribonuclease H [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886437|gb|EFK81639.1| ribonuclease H [Staphylococcus aureus subsp. aureus TCH70] Length = 255 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 14 LEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|295696077|ref|YP_003589315.1| Ribonuclease H [Bacillus tusciae DSM 2912] gi|295411679|gb|ADG06171.1| Ribonuclease H [Bacillus tusciae DSM 2912] Length = 240 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 85/205 (41%), Positives = 125/205 (60%), Gaps = 5/205 (2%) Query: 6 IPERP---HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 IP RP + E K +AG+DE G G LAGPVV AA++L + G+ DSK+ Sbjct: 9 IPTRPPGLGWNWEQYWWTKGYSRIAGVDEAGVGPLAGPVVAAAVVLPKDFDVAGLGDSKR 68 Query: 63 ISHKKREELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ ++REE ++++ A+ ++ ID+ NI +A A+ AV L + L+D Sbjct: 69 LTARQREEQFKRLRRDAVALEVAVVDADLIDRLNILQAARLAMRRAVAALGERCEAVLVD 128 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 GR++P D+P + AV++GD+ S SIAAASI+AKVTRDRLM ++YP YGF+ H GYPT Sbjct: 129 GRTVP-DMPAPSLAVVRGDAQSPSIAAASIVAKVTRDRLMVEYGQRYPGYGFERHKGYPT 187 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206 A H + ++ GP IHR +F P+ Sbjct: 188 AAHLEALERLGPCPIHRRSFGPVAR 212 >gi|332881721|ref|ZP_08449369.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680360|gb|EGJ53309.1| ribonuclease HII [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 207 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 71/176 (40%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE GRG LAG V AA+IL + +NDSK++S KKR L E+I A ++ Sbjct: 13 AGLDEAGRGCLAGAVYAAAVILQKDYRNEMLNDSKQLSEKKRYLLREQIERDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + Q ID+ NI A+ A++ A++ L V P + L+DG V+KGD +S Sbjct: 73 VTPQEIDEINILNASFLAMHRALDQLAVRPEALLVDGNRFKPYRDLPHTTVVKGDGKYMS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H++YP Y +DS+ GYP H++ I+ G + HR+++ Sbjct: 133 IAAASILAKTYRDDYMLRLHEEYPVYHWDSNKGYPAKAHREAIRRHGVTPYHRMSY 188 >gi|299147105|ref|ZP_07040172.1| ribonuclease HII [Bacteroides sp. 3_1_23] gi|298514990|gb|EFI38872.1| ribonuclease HII [Bacteroides sp. 3_1_23] Length = 200 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I AI ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYALREVIEKEAIAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI +A+ A++ AV+ L P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDEINILRASFLAMHRAVDQLSTRPQHLLIDGNRFTKYPGVPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H+++P Y +D + GYPT KH+ I E+G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWDHNKGYPTKKHRASIAERGTTPYHRMTF 188 >gi|294668304|ref|ZP_06733408.1| hypothetical protein NEIELOOT_00217 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309758|gb|EFE51001.1| hypothetical protein NEIELOOT_00217 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 196 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 82/183 (44%), Positives = 108/183 (59%), Gaps = 1/183 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA+IL P+ G+ DSKK+S KKR+ L E+I A+ ++S Sbjct: 7 AGVDEAGRGPLVGSVFAAAVILPPDYDLAGLADSKKLSEKKRDALAEEIRRQAVGWCVAS 66 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A I + NI A + A+ AVE L V P+ IDG +PE L +A AV+KGD + Sbjct: 67 ADVAEIAELNILHAAMLAMRRAVEGLAVPPQKVWIDGNRVPEGLAVEAEAVVKGDDKIAA 126 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M ++YP YGF+ H GY TA H +K+ G HR F P+R Sbjct: 127 ISAASILAKTARDAEMYALAERYPQYGFEKHKGYGTATHLAALKQYGALPEHRAGFAPVR 186 Query: 206 NLS 208 L Sbjct: 187 ELL 189 >gi|254414639|ref|ZP_05028404.1| ribonuclease HII [Microcoleus chthonoplastes PCC 7420] gi|196178487|gb|EDX73486.1| ribonuclease HII [Microcoleus chthonoplastes PCC 7420] Length = 211 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 5/187 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA 79 +AG+DEVGRGAL GPVV AA+IL PN G+ DSK+++ +R++L ++I A Sbjct: 20 KLIAGVDEVGRGALFGPVVAAAVILPASTLPNLAGSGMKDSKQLTRLRRQKLAQEIQELA 79 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 SI A+ ID+ NI +A+L A+ AV L+V P LIDGR LP ++IK Sbjct: 80 VDWSIGYATSTEIDQINILQASLLAMKRAVLKLKVQPDLCLIDGRQALVGLPVPQKSLIK 139 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SL IAAASI+AKV RD L+ KYPDY ++ GY T +H+ ++E GPS HR Sbjct: 140 GDQRSLEIAAASIVAKVWRDDLVGRLATKYPDYDLAANKGYGTERHRLALQEFGPSPQHR 199 Query: 199 LTFRPLR 205 +FRP + Sbjct: 200 RSFRPCQ 206 >gi|294155904|ref|YP_003560288.1| ribonuclease HII [Mycoplasma crocodyli MP145] gi|291599929|gb|ADE19425.1| ribonuclease HII [Mycoplasma crocodyli MP145] Length = 204 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 72/196 (36%), Positives = 110/196 (56%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E ++ + G+DE GRGALAGP+VVA +I N INDSKK++ K+RE L Sbjct: 2 LDYEIKNLKR-FEKILGMDEAGRGALAGPLVVAGVIFPANYKNDEINDSKKLTSKQRENL 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + KI AI I S+ +D+ N KA+ + NL +I Sbjct: 61 FFKIQEDAIAYEIIELSNFEVDELNPKKAS-IVGMEKIANLLADKYDVVITDFEKLNLQD 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++KGD+IS+S+AAASI+AK RD++MR H KYP + +D + GY T H + +++ Sbjct: 120 KKQINLVKGDTISISVAAASILAKHYRDQVMRKLHLKYPMFSWDKNKGYGTKLHLEGLRK 179 Query: 191 KGPSCIHRLTFRPLRN 206 G S HRL+++P++ Sbjct: 180 NGVSPFHRLSYKPVKQ 195 >gi|118586886|ref|ZP_01544320.1| ribonuclease HII [Oenococcus oeni ATCC BAA-1163] gi|118432718|gb|EAV39450.1| ribonuclease HII [Oenococcus oeni ATCC BAA-1163] Length = 209 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 78/197 (39%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E + ++ +AGIDEVGRG +AGPVV + IL N DSK+ + ++R L Sbjct: 14 FKFENELNDEGYQIIAGIDEVGRGCVAGPVVACSCILPANFNVSETYDSKRFNKRQRFLL 73 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E+I ++ + AS ID+ NI+++ A+ +V NL +P + LID ++ DL Sbjct: 74 EEEIKKTSCLFAFGEASVTEIDRINIYQSARLAMKRSVMNLLQMPDALLID--AMAVDLN 131 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +I GD +S SIAAASI+AK RDR+M +KYP+YGF+ +VGY T++ ++ + E Sbjct: 132 LKQLKIIHGDQLSNSIAAASILAKCHRDRIMIKMAEKYPEYGFERNVGYLTSEAKKALLE 191 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P+ L Sbjct: 192 YGITPIHRKTFAPISKL 208 >gi|94969905|ref|YP_591953.1| RNase HII [Candidatus Koribacter versatilis Ellin345] gi|189043528|sp|Q1IMM1|RNH2_ACIBL RecName: Full=Ribonuclease HII; Short=RNase HII gi|94551955|gb|ABF41879.1| RNase HII [Candidatus Koribacter versatilis Ellin345] Length = 254 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 80/192 (41%), Positives = 113/192 (58%), Gaps = 3/192 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + + +AGIDEVGRGAL GPVV AA+ILDPN G+ DSK + + RE L + Sbjct: 36 YEKLAADSGAKLIAGIDEVGRGALFGPVVAAAVILDPNYRIKGLRDSKLLPAETREILSK 95 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I I SI++ ID+ NI+ A+ A+ HAV + + + ++ DL C Sbjct: 96 RIREHCIAWSIAAVDVARIDQLNIYWASNLAMKHAVR--GLSCQPDHLLIDAMKLDLDCA 153 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I GD++S SIAAASIIAKV RD L+R +P+Y S+ GY KH + ++E G Sbjct: 154 QTPIIHGDALSASIAAASIIAKVHRDALIREWAPIFPEYDLASNKGYSAPKHIKALREFG 213 Query: 193 PSCIHRLTFRPL 204 PS +HR +F P+ Sbjct: 214 PSPLHRQSFAPV 225 >gi|52841603|ref|YP_095402.1| ribonuclease HII [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81377550|sp|Q5ZVR7|RNH2_LEGPH RecName: Full=Ribonuclease HII; Short=RNase HII gi|46398969|gb|AAS92170.1| RNase H ribonuclease [Legionella pneumophila] gi|46398971|gb|AAS92171.1| RNase H ribonuclease [Legionella pneumophila] gi|52628714|gb|AAU27455.1| ribonuclease HII [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 191 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 79/184 (42%), Positives = 107/184 (58%), Gaps = 4/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A + Sbjct: 8 LMAGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NIH ATL A+ AVE L + P + +DG + L A+++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVFVDG-AFTPQLNIPCKAIVQGDSLI 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P Sbjct: 125 PEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSP 184 Query: 204 LRNL 207 + +L Sbjct: 185 VADL 188 >gi|113474350|ref|YP_720411.1| ribonuclease HII [Trichodesmium erythraeum IMS101] gi|123352730|sp|Q118Y6|RNH2_TRIEI RecName: Full=Ribonuclease HII; Short=RNase HII gi|110165398|gb|ABG49938.1| RNase HII [Trichodesmium erythraeum IMS101] Length = 211 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 109/184 (59%), Gaps = 5/184 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81 AG+DEVGRGAL GPVV AA+IL + + G+ DSKK++ K+R L I + A Sbjct: 20 AGVDEVGRGALFGPVVAAAVILPEDVLDDLASTGVTDSKKLTEKRRCHLASLIRTVAWDC 79 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I AS + ID+ NI KA+L A+ AV L++ P L+DG DL V+KGDS Sbjct: 80 QIGIASVREIDRLNILKASLLAMKRAVLRLKLRPDLVLVDGNQEIRDLFIPQRTVVKGDS 139 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 L+IAAASI+AKV RD L+ KKYP Y + GY T KH+Q I G S HRL+F Sbjct: 140 KCLAIAAASIVAKVWRDTLIMRLAKKYPVYDLTKNKGYGTKKHKQGIINYGVSPQHRLSF 199 Query: 202 RPLR 205 P + Sbjct: 200 SPCQ 203 >gi|189464553|ref|ZP_03013338.1| hypothetical protein BACINT_00896 [Bacteroides intestinalis DSM 17393] gi|189438343|gb|EDV07328.1| hypothetical protein BACINT_00896 [Bacteroides intestinalis DSM 17393] Length = 201 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ +R L E I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEHQRYALREVIEKEALAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ L++ P+ LIDG + V+KGD LS Sbjct: 73 VSPEEIDKINILNASFLAMHRAVDQLKMRPQHLLIDGNRFKKYQDLPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I E+G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEYPYYDWNHNKGYPTKKHRATIAERGTTPYHRMTF 188 >gi|307824003|ref|ZP_07654230.1| Ribonuclease H [Methylobacter tundripaludum SV96] gi|307734787|gb|EFO05637.1| Ribonuclease H [Methylobacter tundripaludum SV96] Length = 203 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 85/186 (45%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DE GRG LAGPV AA+ILDP G+ DSK +S KR LY I +A SI Sbjct: 14 IVAGVDEAGRGPLAGPVFAAAVILDPMRPIAGLADSKILSESKRNSLYIIIKEAALSWSI 73 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + A ID NI +ATL A+ AVE L + P L+DG +P+ A A++KGDS Sbjct: 74 AQAGVDEIDGLNILQATLLAMQRAVEGLNIQPDEVLVDGNRLPKLSM-PAQAIVKGDSKV 132 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKV RD+LM H++YPD+ F H GY T +H I++ G +HR TF P Sbjct: 133 QAISAASILAKVERDKLMVDYHQQYPDFAFHVHKGYGTKQHLAEIEQFGFLAVHRRTFNP 192 Query: 204 LRNLSV 209 ++ + + Sbjct: 193 VKTMLI 198 >gi|329733653|gb|EGG69981.1| ribonuclease HII [Staphylococcus aureus subsp. aureus 21193] Length = 255 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 14 LEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|283470457|emb|CAQ49668.1| ribonuclease HII (RNase HII) [Staphylococcus aureus subsp. aureus ST398] Length = 255 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 14 LEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKNYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|113970962|ref|YP_734755.1| ribonuclease HII [Shewanella sp. MR-4] gi|123029487|sp|Q0HGW9|RNH2_SHESM RecName: Full=Ribonuclease HII; Short=RNase HII gi|113885646|gb|ABI39698.1| RNase HII [Shewanella sp. MR-4] Length = 209 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 111/190 (58%), Gaps = 5/190 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ K+RE L+++I A Sbjct: 18 GLVAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLTEKRREALFDEICEKALSYH 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS----IPEDLPCQAFAVIK 138 + A+ ID+ NI AT+ A+ AV L P L+DG + L + +++K Sbjct: 78 VGRATPSEIDELNILHATMLAMQRAVAGLARTPELVLVDGNRSPAFTHQGLSLTSHSIVK 137 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + SI+AASIIAKVTRDR M YP YGF H GYPT H I E G +R Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYR 197 Query: 199 LTFRPLRNLS 208 +F+P++ L Sbjct: 198 KSFKPVKALL 207 >gi|329954154|ref|ZP_08295249.1| ribonuclease HII [Bacteroides clarus YIT 12056] gi|328528131|gb|EGF55111.1| ribonuclease HII [Bacteroides clarus YIT 12056] Length = 199 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 74/176 (42%), Positives = 103/176 (58%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFENDLLNDSKQLTEKQRYALREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + IDK NI A+ A++ AV+ LQ+ P+ LIDG + V+KGD LS Sbjct: 73 VSPKEIDKINILNASFLAMHRAVDRLQLRPQHLLIDGNRFRKYGDIPHTTVVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H+++P Y ++ + GYPT KH+ I +G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNRLHEEFPYYDWNHNKGYPTKKHRAAIAGRGTTPYHRMTF 188 >gi|34497665|ref|NP_901880.1| ribonuclease HII [Chromobacterium violaceum ATCC 12472] gi|39932273|sp|Q7NPS3|RNH2_CHRVO RecName: Full=Ribonuclease HII; Short=RNase HII gi|34331005|gb|AAQ64053.1| ribonuclease HII [Chromobacterium violaceum ATCC 12472] Length = 198 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 83/182 (45%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DE GRG LAG V AA+ILDP G+ DSK +S +R+EL I A + Sbjct: 6 RVAGVDEAGRGPLAGAVFAAAVILDPAKPIAGLADSKVLSEAQRDELAVLIKRDALAWCV 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 +SAS + IDK NI AT+ A+ AVE L V P A IDG +P+ LP A++KGD+ Sbjct: 66 ASASVEEIDKLNILHATMLAMTRAVEGLPVRPDLAQIDGNRVPKHLPVPGEAIVKGDAKV 125 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AK RD + +P YGF H GYPTA+H I+ G HR TF P Sbjct: 126 AAISAASILAKTARDAELVALDALHPQYGFARHKGYPTAEHLAAIEAHGVLPAHRKTFGP 185 Query: 204 LR 205 ++ Sbjct: 186 VK 187 >gi|288925319|ref|ZP_06419253.1| ribonuclease HII [Prevotella buccae D17] gi|315606714|ref|ZP_07881724.1| ribonuclease HII [Prevotella buccae ATCC 33574] gi|288337790|gb|EFC76142.1| ribonuclease HII [Prevotella buccae D17] gi|315251569|gb|EFU31548.1| ribonuclease HII [Prevotella buccae ATCC 33574] Length = 201 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 70/176 (39%), Positives = 105/176 (59%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++SHK+R EL E+I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPRDYNNPALNDSKQLSHKRRNELREQIMHDAVAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI KA+ A++ A++ L V P + ++DG A++KGD S Sbjct: 73 VTPEEIDRINILKASFLAMHRALDALNVRPEAVIVDGNRFVPYGDLPYTAIVKGDGKYQS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M ++YP Y ++ ++GYPT KH++ I+ G HR ++ Sbjct: 133 IAAASILAKTFRDDYMCDLARRYPYYDWEHNMGYPTKKHREGIRLHGICPYHRKSY 188 >gi|296284404|ref|ZP_06862402.1| ribonuclease HII [Citromicrobium bathyomarinum JL354] Length = 212 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 72/188 (38%), Positives = 106/188 (56%), Gaps = 9/188 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 V G+DE GRG LAGPVV +A+ L P G++DSKK+ KR L E++ ++ Sbjct: 19 LVVGVDEAGRGPLAGPVVASAVALCK-PRPAGLDDSKKLGALKRSALDEQVRRRCAWGVA 77 Query: 85 SASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRS----IPEDLPCQAFAV 136 + ID+ NI AT+ A+ AV + + P L+DG E A A+ Sbjct: 78 VVEPEEIDRLNIFGATMLAMTLAVTRVAQAMGRAPDMVLVDGNLTPSGRCEGWCWPARAI 137 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD+ +I+AASI+AK RDRLM A ++YP YG++ + GY TA+H ++E GP + Sbjct: 138 VGGDAKEPAISAASIVAKEWRDRLMIAAAREYPHYGWERNKGYGTAEHLSALREHGPCAL 197 Query: 197 HRLTFRPL 204 HR +F P+ Sbjct: 198 HRRSFAPV 205 >gi|86748206|ref|YP_484702.1| ribonuclease HII [Rhodopseudomonas palustris HaA2] gi|123293064|sp|Q2J169|RNH2_RHOP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|86571234|gb|ABD05791.1| RNase HII [Rhodopseudomonas palustris HaA2] Length = 284 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 93/196 (47%), Positives = 128/196 (65%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP +P G++DSK++S +KR Sbjct: 56 PPSFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKR 115 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EEL+E+I +SA +S++ AS + I++ NI +A+L A+ AV L +P+ +DGR Sbjct: 116 EELFEEICASAQVSVACASPERINRDNILRASLWALTRAVHALPDLPQHVFVDGRDRLA- 174 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 C++ AVI GD + SIAAASIIAKVTRDRLM + P YGF+ H GY +H + Sbjct: 175 TRCESEAVIGGDGLIASIAAASIIAKVTRDRLMCRLAQDCPGYGFEQHKGYGVPEHLAAL 234 Query: 189 KEKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 235 ARLGPSVHHRRFFAPV 250 >gi|258423915|ref|ZP_05686800.1| ribonuclease HII [Staphylococcus aureus A9635] gi|257845944|gb|EEV69973.1| ribonuclease HII [Staphylococcus aureus A9635] Length = 255 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 82/196 (41%), Positives = 117/196 (59%), Gaps = 4/196 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++N + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKENPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 TQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNL 207 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSL 254 >gi|54297282|ref|YP_123651.1| ribonuclease HII [Legionella pneumophila str. Paris] gi|81370660|sp|Q5X5J3|RNH2_LEGPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|46398979|gb|AAS92175.1| RNase H ribonuclease [Legionella pneumophila] gi|46398981|gb|AAS92176.1| RNase H ribonuclease [Legionella pneumophila] gi|46398983|gb|AAS92177.1| RNase H ribonuclease [Legionella pneumophila] gi|46398985|gb|AAS92178.1| RNase H ribonuclease [Legionella pneumophila] gi|53751067|emb|CAH12478.1| hypothetical protein lpp1327 [Legionella pneumophila str. Paris] Length = 191 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 79/184 (42%), Positives = 108/184 (58%), Gaps = 4/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A + Sbjct: 8 LMAGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NIH ATL A+ AVE L + P + ++DG + L A+++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDG-AFTPQLNIPCKAIVQGDSLI 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P Sbjct: 125 PEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSP 184 Query: 204 LRNL 207 + +L Sbjct: 185 VADL 188 >gi|75907505|ref|YP_321801.1| ribonuclease HII [Anabaena variabilis ATCC 29413] gi|97182199|sp|Q3MDN0|RNH2_ANAVT RecName: Full=Ribonuclease HII; Short=RNase HII gi|75701230|gb|ABA20906.1| RNase HII [Anabaena variabilis ATCC 29413] Length = 225 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 121/196 (61%), Gaps = 6/196 (3%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 VAG+DEVGRGAL GPVV A++IL ++ P I DSKK+SH +R +L ++ Sbjct: 30 WSNISGLVAGVDEVGRGALFGPVVAASVILPASSFPQLMTAEIKDSKKLSHSRRVQLAQQ 89 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I++ A I A+ ID+ NI +ATL A+ +V+ L++ P L+DG +DLP Sbjct: 90 ISTLAIDWRIGYATTAEIDRINILQATLLAMRRSVKKLKLQPILCLVDGNQPVQDLPILQ 149 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGD SL+IAAASI+AKV RD L++ KYP Y S+ GY + KH +++ G Sbjct: 150 QTIVKGDERSLNIAAASIMAKVWRDDLIQRLSTKYPMYDLKSNKGYGSKKHLLALEKHGA 209 Query: 194 SCIHRLTFRPLRNLSV 209 S +HR +FRP + +S+ Sbjct: 210 SPLHRQSFRPCQ-ISL 224 >gi|330752803|emb|CBL88322.1| ribonuclease HII [uncultured Dokdonia sp.] Length = 212 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 71/184 (38%), Positives = 100/184 (54%), Gaps = 8/184 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA++L + I + DSK+++ KKR+ L I AI S S Sbjct: 13 CGTDEAGRGCLAGPVTAAAVMLPDSFINEILTDSKQLTEKKRDLLKPIIEQQAIAYSFSH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIK 138 + ID NI A++ A++ ++E + Q P+ L+DG VIK Sbjct: 73 VMMEEIDDINILNASITAMHRSIEGMIGTLSRKQKKPQHILVDGNRFKPFTGIDHTTVIK 132 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD L IAAASIIAK RD M H++YP Y + + GYPT +H++ I+ G + HR Sbjct: 133 GDGKYLPIAAASIIAKTERDLFMDRIHEEYPMYNWKKNKGYPTKEHREAIRTYGITKYHR 192 Query: 199 LTFR 202 +F+ Sbjct: 193 KSFK 196 >gi|307610074|emb|CBW99613.1| hypothetical protein LPW_13821 [Legionella pneumophila 130b] Length = 191 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 80/184 (43%), Positives = 108/184 (58%), Gaps = 4/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A + Sbjct: 8 LMAGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NIH ATL A+ AVE L + P + L+DG + L A+++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVLVDG-AFTPQLNIPCKAIVQGDSLI 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P Sbjct: 125 PEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSP 184 Query: 204 LRNL 207 + +L Sbjct: 185 VADL 188 >gi|303246153|ref|ZP_07332434.1| Ribonuclease H [Desulfovibrio fructosovorans JJ] gi|302492549|gb|EFL52420.1| Ribonuclease H [Desulfovibrio fructosovorans JJ] Length = 206 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 77/188 (40%), Positives = 104/188 (55%), Gaps = 8/188 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRG LAGPVV A+IL + DSKK+S +RE L I + AI ++ Sbjct: 6 LIAGVDEAGRGCLAGPVVAGAVILPEAYDLPFLTDSKKLSAARREGLAPAIKAQAIAWAV 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC-------QAFAV 136 A ID+ NI +AT A+ AV L+V P + IDG A+ Sbjct: 66 GMAWPVEIDRINILQATFAAMSRAVRALRVRPEALKIDGNKRIPAAHLANIAAPPPQEAI 125 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I GD +I+AASI+AK +RD+LM I +++P YGF SH GY H ++E GP + Sbjct: 126 IGGDLSVPAISAASILAKTSRDKLMTIFDRQFPGYGFASHKGYGAKAHLAALRELGPCRL 185 Query: 197 HRLTFRPL 204 HRLTFR + Sbjct: 186 HRLTFRGV 193 >gi|300776110|ref|ZP_07085969.1| ribonuclease H [Chryseobacterium gleum ATCC 35910] gi|300505243|gb|EFK36382.1| ribonuclease H [Chryseobacterium gleum ATCC 35910] Length = 194 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 78/177 (44%), Positives = 111/177 (62%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DEVGRG L+GPVV AA+ILD +NDSKK++ K R EL I + +I+ Sbjct: 14 AGCDEVGRGCLSGPVVAAAVILDEGFEQNLVNDSKKLTFKTRMELDSYIKDNVKNYAIAE 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 +ID+HNI A++ A++ A++ L + P L+DG +IKGDS LS Sbjct: 74 LPASFIDEHNILNASIHAMHRALDKLTITPELILVDGNKFHPYNYIPHQCIIKGDSKVLS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD+LM H+++P+YG+D++ GY T KHQ+ + + GP+ HR +FR Sbjct: 134 IAAASILAKNYRDKLMMQLHEEHPEYGWDTNFGYATKKHQEALIKHGPTIYHRQSFR 190 >gi|313665432|ref|YP_004047303.1| ribonuclease HII [Mycoplasma leachii PG50] gi|312949606|gb|ADR24202.1| ribonuclease HII [Mycoplasma leachii PG50] Length = 207 Score = 170 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 74/188 (39%), Positives = 112/188 (59%), Gaps = 1/188 (0%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-I 80 N+ ++G DE GRG LAG +VVA++IL + I DSKK++ K R+ LY++I + Sbjct: 16 NITYLSGSDEAGRGCLAGSLVVASVILKLDYFNPLIKDSKKLNPKTRQVLYDEIIKNCLD 75 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I S + +D+ N +A+L + NL++ P ALIDG E + +IKGD Sbjct: 76 YQIIIISSKQVDEFNPLQASLLGFKTTINNLKITPDLALIDGNQNIELTNIKTLPIIKGD 135 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SIA +SI+AKVTRD+++ + YP+Y F SH GY T KH I++ G IHR + Sbjct: 136 DKSFSIACSSILAKVTRDKILDEYDQIYPNYDFKSHKGYCTKKHLLAIQKYGILDIHRKS 195 Query: 201 FRPLRNLS 208 ++P++ +S Sbjct: 196 YKPIKKIS 203 >gi|114048186|ref|YP_738736.1| ribonuclease HII [Shewanella sp. MR-7] gi|123131228|sp|Q0HT76|RNH2_SHESR RecName: Full=Ribonuclease HII; Short=RNase HII gi|113889628|gb|ABI43679.1| RNase HII [Shewanella sp. MR-7] Length = 209 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 110/190 (57%), Gaps = 5/190 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK++ K+RE L+++I A Sbjct: 18 GLVAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLTEKRREALFDEICEKALSFH 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS----IPEDLPCQAFAVIK 138 + AS ID+ NI AT+ A+ AV L + P L+DG + +++K Sbjct: 78 VGRASPAEIDELNILHATMLAMQRAVAGLSLTPELVLVDGNRSPAFNHAGQALTSHSIVK 137 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + SI+AASIIAKVTRDR M YP YGF H GYPT H I E G +R Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYR 197 Query: 199 LTFRPLRNLS 208 +F+P++ L Sbjct: 198 KSFKPVKALL 207 >gi|146328634|ref|YP_001209596.1| ribonuclease HII [Dichelobacter nodosus VCS1703A] gi|189043593|sp|A5EV63|RNH2_DICNV RecName: Full=Ribonuclease HII; Short=RNase HII gi|146232104|gb|ABQ13082.1| ribonuclease HII [Dichelobacter nodosus VCS1703A] Length = 189 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 82/185 (44%), Positives = 111/185 (60%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +AG+DE GRGA G VV AA+IL + + DSKK+S KRE L I AI ++ Sbjct: 1 MIAGVDEAGRGAWIGNVVAAAVILPNDYDLPDLTDSKKLSAAKRERLCAAIYEQAIAVAC 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S + ID+ NIH ATL A+ AV L+V P LIDG +LP +I GD++ Sbjct: 61 AWCSPEEIDQLNIHYATLCAMKKAVITLKVAPTEVLIDG-KFAPELPFPTRTIIGGDALE 119 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRD+ M YPDYGF +H GY T KHQQ +++ G +HR ++ P Sbjct: 120 PAISAASIVAKVTRDKQMIALDALYPDYGFAAHKGYGTQKHQQALRQFGVLPLHRRSYAP 179 Query: 204 LRNLS 208 + L Sbjct: 180 IAALL 184 >gi|71279195|ref|YP_268311.1| ribonuclease HII [Colwellia psychrerythraea 34H] gi|97182381|sp|Q485F4|RNH2_COLP3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|71144935|gb|AAZ25408.1| ribonuclease HII [Colwellia psychrerythraea 34H] Length = 217 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 91/209 (43%), Positives = 113/209 (54%), Gaps = 18/209 (8%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P FE +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR Sbjct: 8 PDFEYPIAY------CIAGVDEVGRGPLVGDVVTAAVILDPDNPIEGLMDSKKLSEKKRN 61 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L +I AI S+ AS Q ID NI AT+ A+ AVE L V P L+DG P Sbjct: 62 LLSLEIKEKAISWSLGRASPQEIDTLNILHATMLAMQRAVEGLNVEPDFVLVDGNRCPTF 121 Query: 129 LP-----------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 L + AV+KGD+ I+AASIIAKV RD M K +P+YGF H Sbjct: 122 LCNASESNQQNLKIASQAVVKGDARVTEISAASIIAKVARDNEMIALDKLHPEYGFAKHK 181 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 GYPT H + I E G +R +F+P+ Sbjct: 182 GYPTKLHLEKIIEHGVLDCYRQSFKPVAR 210 >gi|71899396|ref|ZP_00681555.1| Ribonuclease H [Xylella fastidiosa Ann-1] gi|71730805|gb|EAO32877.1| Ribonuclease H [Xylella fastidiosa Ann-1] Length = 234 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 116/195 (59%), Gaps = 2/195 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEK 74 + N VAG+DE GRG LAGPVVVAA++ DP+ G+NDSK++S RE LY Sbjct: 8 QHLLNSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPHINGLNDSKQLSPACRERLYAH 67 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A + ID NI++AT+ + AVE + + +SA IDG +P++LPC A Sbjct: 68 IVERALAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPA 127 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++ GD+ +I AASI+AKVTRDR M H +YP YGFD H GY T H + E GP Sbjct: 128 EALVGGDTRDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGP 187 Query: 194 SCIHRLTFRPLRNLS 208 HR +F P+R + Sbjct: 188 CLEHRQSFAPVRRML 202 >gi|323691868|ref|ZP_08106122.1| ribonuclease [Clostridium symbiosum WAL-14673] gi|323504075|gb|EGB19883.1| ribonuclease [Clostridium symbiosum WAL-14673] Length = 219 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 83/198 (41%), Positives = 111/198 (56%), Gaps = 5/198 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E E + GIDE GRG LAGPVV AA +L + + +NDSKK+S ++REEL+ Sbjct: 21 EYERKYEE--YSVICGIDEAGRGPLAGPVVAAAAVLPKDAVILWLNDSKKLSERRREELF 78 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A+ + S ID+ NI +AT +A+ AV L P L D IP Sbjct: 79 LEIREKAVAYGVGIVSPAVIDEINILQATYEAMRQAVSQLPAEPDIFLNDAVMIPGIDDK 138 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +IKGD+ S+SIAAAS++AKVTRD +M K YP+YGF H GY T H I+E Sbjct: 139 KQVRIIKGDAKSVSIAAASVLAKVTRDHMMEEYDKLYPEYGFAKHKGYGTKAHMVAIREF 198 Query: 192 GPSCIHRLTFRPLRNLSV 209 G IHR +F + + Sbjct: 199 GVCPIHRRSFLT--KMDL 214 >gi|238751436|ref|ZP_04612928.1| Ribonuclease HII [Yersinia rohdei ATCC 43380] gi|238710303|gb|EEQ02529.1| Ribonuclease HII [Yersinia rohdei ATCC 43380] Length = 183 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 108/179 (60%), Gaps = 2/179 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSAS 87 +DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIDKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + ID NI AT+ A+ AV L ++P LIDG P+ + AV+KGDS I+ Sbjct: 61 PEEIDHLNILHATMLAMQRAVAGLHIVPDYVLIDGNRCPQLAM-PSLAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AASI+AKVTRDR M + +P+YGF H GYPTA H + + G + HR +F P++ Sbjct: 120 AASILAKVTRDREMTELDRHFPEYGFAQHKGYPTAVHLEKLSTFGATEHHRRSFGPVKR 178 >gi|238787221|ref|ZP_04631020.1| Ribonuclease HII [Yersinia frederiksenii ATCC 33641] gi|238724483|gb|EEQ16124.1| Ribonuclease HII [Yersinia frederiksenii ATCC 33641] Length = 183 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 107/179 (59%), Gaps = 2/179 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSAS 87 +DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + ID NI AT+ A+ AV L ++P LIDG P+ + AV+KGDS I+ Sbjct: 61 PEEIDHLNILHATMLAMQRAVAGLHIVPDYVLIDGNRCPKLAM-PSLAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AASI+AKVTRDR M +P+YGF H GYPT H + + G + HR +F P++ Sbjct: 120 AASILAKVTRDREMTELDLHFPEYGFAQHKGYPTPVHLETLAAFGATEHHRRSFGPVKR 178 >gi|225848014|ref|YP_002728177.1| ribonuclease HII [Sulfurihydrogenibium azorense Az-Fu1] gi|225644327|gb|ACN99377.1| ribonuclease HII [Sulfurihydrogenibium azorense Az-Fu1] Length = 193 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 79/191 (41%), Positives = 115/191 (60%), Gaps = 3/191 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 LE + + + GIDE GRG +AGP+V++A+I N PF DSKK+S K+R+ LY Sbjct: 3 SLEKKIYKNGYKYIVGIDEAGRGPIAGPLVISAVIFKYNQKPFVYADSKKLSPKERDSLY 62 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I +A SI ++ ID I A + IY A+E L + P A++D I DL Sbjct: 63 NEILENALDYSIVVVDNEKIDSLGISSALKEGIYKAIEKLYIKPDYAILD--FINIDLDF 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++ K D +S ++AAASI++K+TRDR+M K YP++ FD H GYPT +H Q IK Sbjct: 121 DSISIPKADEVSHTVAAASILSKITRDRIMEDYSKIYPNFSFDKHKGYPTKQHYQEIKMY 180 Query: 192 GPSCIHRLTFR 202 G + IHR ++R Sbjct: 181 GITPIHRKSYR 191 >gi|308810146|ref|XP_003082382.1| putative ribonuclease HII (ISS) [Ostreococcus tauri] gi|116060850|emb|CAL57328.1| putative ribonuclease HII (ISS) [Ostreococcus tauri] Length = 299 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 70/202 (34%), Positives = 105/202 (51%), Gaps = 9/202 (4%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 P E + V G+DE GRG LAGPVV AA + + + +NDSK+++ + Sbjct: 96 PGPDRSHEKKHWDAGRHRVVGVDEAGRGPLAGPVVAAACFVPKDCVVDCVNDSKQLTEEG 155 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 REE++E++ ++ I + LIDG +P+ Sbjct: 156 REEIFEELMANKEIEYRGINILECT---------MEAMTRSALDVPNVDWVLIDGNRVPK 206 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L +A A++KGD+ +++IAAASIIAKVTRDR+M K++P YGF H GY T H Sbjct: 207 PLEGKAEAIVKGDAKNVAIAAASIIAKVTRDRMMVEIDKEFPMYGFKDHKGYGTKAHMAA 266 Query: 188 IKEKGPSCIHRLTFRPLRNLSV 209 I + GP HR TF P++++ + Sbjct: 267 IDKYGPCVYHRKTFAPIKHMDL 288 >gi|110004283|emb|CAK98621.1| putative ribonuclease h II protein [Spiroplasma citri] Length = 207 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 116/195 (59%), Gaps = 3/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 FE E ++ N +AG DE GRG LAGP+VV+A+IL + + I DSKKI+ K+R +L Sbjct: 4 FEKEILISYPNTTILAGTDEAGRGCLAGPLVVSAVILPLDYVNDEIKDSKKITAKQRIKL 63 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I S AI +I S ++ N +A++ + A++NL V L D + Sbjct: 64 ADEIMSIAISYTIEIISVAMFEELNPKQASIFGMQQAIDNLMVKSDIILTDAEKL--GPS 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A+IKGDS+S SI AASI+AKVTRD LM + YP Y F ++ GY T KH +++ Sbjct: 122 YNHQAIIKGDSLSQSIVAASILAKVTRDNLMLKFDQDYPQYDFKNNKGYGTKKHLLALQQ 181 Query: 191 KGPSCIHRLTFRPLR 205 G + +HR T+RP+R Sbjct: 182 FGITSLHRKTYRPVR 196 >gi|238784894|ref|ZP_04628894.1| Ribonuclease HII [Yersinia bercovieri ATCC 43970] gi|238714211|gb|EEQ06223.1| Ribonuclease HII [Yersinia bercovieri ATCC 43970] Length = 183 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 82/179 (45%), Positives = 109/179 (60%), Gaps = 2/179 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSAS 87 +DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++IT A S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS I+ Sbjct: 61 PEEIDRLNILHATMLAMQRAVAGLHITPDYVLIDGNRCPKLAM-PSLAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AASI+AKVTRDR M + +P+YGF H GYPTA H + + G + HR +F P++ Sbjct: 120 AASILAKVTRDREMTELDRHFPEYGFAQHKGYPTAVHLEKLSAFGATEHHRRSFGPVKR 178 >gi|332967913|gb|EGK07003.1| ribonuclease HII [Kingella kingae ATCC 23330] Length = 219 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 77/180 (42%), Positives = 108/180 (60%), Gaps = 1/180 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG+DE GRG L G V AA++L + G+ DSKK+S KKR+ L +I AI S+++ Sbjct: 30 AGVDEAGRGCLVGSVFAAAVMLPTDYALHGLTDSKKLSEKKRDALAVEIKQQAIAWSVAA 89 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS I ++NI +ATL A+ A+ L P IDG +P++L A AV++GDS + Sbjct: 90 ASPAEIAQYNILQATLLAMTRAIAGLAKQPAFVWIDGNCVPKNLTMPAQAVVQGDSKIAT 149 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD M H++YP YGF H GY TA H +++ G HR F P++ Sbjct: 150 ISAASILAKTARDAEMYALHERYPQYGFAQHKGYGTAAHLAALQQFGALAEHRADFAPVK 209 >gi|186684020|ref|YP_001867216.1| ribonuclease HII [Nostoc punctiforme PCC 73102] gi|186466472|gb|ACC82273.1| ribonuclease HII/HIII [Nostoc punctiforme PCC 73102] Length = 218 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 84/187 (44%), Positives = 114/187 (60%), Gaps = 5/187 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRGAL GPVV AA+IL + +P I DSKK+S +R +L ++I + A Sbjct: 25 GLVAGVDEVGRGALFGPVVAAAVILPDHALPILIAAKIKDSKKLSSSRRTQLAQQICALA 84 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I AS IDK NI +ATL A+ AV L+V P L+DG +DL +IK Sbjct: 85 IDWKIGFASTAEIDKINILQATLLAMKRAVLKLKVQPAICLVDGNQSIKDLLLPQQTIIK 144 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SL+IA+ASI+AKV RD L+ KYP Y + + GY + +H +++ GPS +HR Sbjct: 145 GDERSLAIASASIVAKVWRDDLVLRLALKYPMYNLERNKGYGSQRHLLALQQYGPSPLHR 204 Query: 199 LTFRPLR 205 +FRP + Sbjct: 205 QSFRPCQ 211 >gi|116491049|ref|YP_810593.1| RNase HII [Oenococcus oeni PSU-1] gi|290890530|ref|ZP_06553605.1| hypothetical protein AWRIB429_0995 [Oenococcus oeni AWRIB429] gi|116091774|gb|ABJ56928.1| RNase HII [Oenococcus oeni PSU-1] gi|290479926|gb|EFD88575.1| hypothetical protein AWRIB429_0995 [Oenococcus oeni AWRIB429] Length = 209 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 78/197 (39%), Positives = 118/197 (59%), Gaps = 3/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E + ++ +AGIDEVGRG +AGPVV + IL N DSK+ + ++R L Sbjct: 14 FKFENELNDEGYQIIAGIDEVGRGCVAGPVVACSCILPANFNVSETYDSKRFNKRQRFLL 73 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E+I ++ + AS ID NI+++ A+ +V NL +P + LID ++ DL Sbjct: 74 EEEIKKTSCLFAFGEASVTEIDLINIYQSARLAMKRSVMNLLQMPDALLID--AMAVDLN 131 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +I GD +S SIAAASI+AK RDR+M +KYP+YGF+ +VGY T++ ++ + E Sbjct: 132 LKQLKIIHGDQLSNSIAAASILAKCHRDRIMIKMAEKYPEYGFERNVGYLTSEAKKALLE 191 Query: 191 KGPSCIHRLTFRPLRNL 207 G + IHR TF P+ L Sbjct: 192 YGITPIHRKTFAPISKL 208 >gi|117921242|ref|YP_870434.1| ribonuclease HII [Shewanella sp. ANA-3] gi|166226654|sp|A0KZ09|RNH2_SHESA RecName: Full=Ribonuclease HII; Short=RNase HII gi|117613574|gb|ABK49028.1| RNase HII [Shewanella sp. ANA-3] Length = 209 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 86/190 (45%), Positives = 111/190 (58%), Gaps = 5/190 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDPN G+NDSKK+S K+RE L+++I A Sbjct: 18 GLVAGVDEVGRGPLVGDVVTAAVILDPNRPIAGLNDSKKLSEKRREALFDEICEKALSYH 77 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS----IPEDLPCQAFAVIK 138 + AS ID+ NI AT+ A+ AV L P L+DG + L + +++K Sbjct: 78 VGRASPLEIDELNILHATMLAMQRAVAGLARAPELVLVDGNRSPAFTHQGLTLISHSIVK 137 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD + SI+AASIIAKVTRDR M YP YGF H GYPT H I E G +R Sbjct: 138 GDGLIASISAASIIAKVTRDREMDALDAAYPQYGFAKHKGYPTKAHFDAIAEHGVFDQYR 197 Query: 199 LTFRPLRNLS 208 +F+P++ L Sbjct: 198 KSFKPVKALL 207 >gi|54294259|ref|YP_126674.1| hypothetical protein lpl1324 [Legionella pneumophila str. Lens] gi|81368717|sp|Q5WWX5|RNH2_LEGPL RecName: Full=Ribonuclease HII; Short=RNase HII gi|53754091|emb|CAH15564.1| hypothetical protein lpl1324 [Legionella pneumophila str. Lens] Length = 191 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 80/184 (43%), Positives = 108/184 (58%), Gaps = 4/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A + Sbjct: 8 LMAGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NIH ATL A+ AVE L + P + L+DG P+ A+++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVLVDGAFTPQLNM-PCKAIVQGDSLI 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P Sbjct: 125 PEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSP 184 Query: 204 LRNL 207 + +L Sbjct: 185 VADL 188 >gi|296117635|ref|ZP_06836219.1| ribonuclease HII [Corynebacterium ammoniagenes DSM 20306] gi|295969366|gb|EFG82607.1| ribonuclease HII [Corynebacterium ammoniagenes DSM 20306] Length = 223 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 79/195 (40%), Positives = 106/195 (54%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 E + + + PVAG+DE GRGA AGP+ +AA IL IP + DSKK+S K+REE Sbjct: 9 TYEVALSKAGLGPVAGVDEAGRGACAGPITIAACILPEKIIPSLATLTDSKKLSAKQREE 68 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I +A SI IDKH I A + + AV L+V PR L D + Sbjct: 69 LFPAIQRNALAYSIVHIDPGDIDKHGIQHANVSGMRRAVARLEVRPRYILTDALKVS-GF 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 V+ GD IAAAS++AKV+RD +M +KYP YG H GY TA H + IK Sbjct: 128 TAPYLPVVGGDFAIRCIAAASVLAKVSRDHIMEELEEKYPGYGLGKHKGYGTAVHTEAIK 187 Query: 190 EKGPSCIHRLTFRPL 204 G + IHR+++ + Sbjct: 188 TLGATAIHRMSYSNV 202 >gi|167753859|ref|ZP_02425986.1| hypothetical protein ALIPUT_02144 [Alistipes putredinis DSM 17216] gi|167658484|gb|EDS02614.1| hypothetical protein ALIPUT_02144 [Alistipes putredinis DSM 17216] Length = 198 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPV AA++L P+ +NDSK+++ ++R+ L + A + + Sbjct: 13 AGCDEAGRGCLAGPVFAAAVMLPPDFSHPLLNDSKQMTARQRDLLRAIVEREALAWVVKA 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI A+ + + AV L + P IDG L ++KGD Sbjct: 73 VSAERIDQINILNASFEGMSLAVAELPIRPGFLAIDGNRFRTTLDIPYRCIVKGDGKYAD 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M +P+YG++ + GYPT +H+ I+ G + HRLTF Sbjct: 133 IAAASVLAKTHRDEYMERLAGDFPEYGWERNKGYPTREHRLAIRRYGLTPHHRLTF 188 >gi|282883154|ref|ZP_06291753.1| ribonuclease HII [Peptoniphilus lacrimalis 315-B] gi|281296966|gb|EFA89463.1| ribonuclease HII [Peptoniphilus lacrimalis 315-B] Length = 205 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 5/194 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E R+K +AGIDEVGRG+L G V+ AII+ ++ G+NDSKK++ KKR+ELY Sbjct: 5 AYEKDYRKKGSKLIAGIDEVGRGSLFGDVLSCAIIMKEDSNIEGVNDSKKLTAKKRKELY 64 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 KI + + I A + IDK NI AT ++ A+ENL+ + ++ + + Sbjct: 65 NKILEDSLAVGIGRADAKTIDKLNIKMATHLSMVRAIENLRDSQGNLVVPDLVLIDAENI 124 Query: 132 Q----AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + ++IKGD SIA ASIIAKV RD L YP YG + H GY T H++ Sbjct: 125 ETTIFQHSIIKGDENCYSIACASIIAKVYRDSLCDKWATIYPGYGIEKHKGYGTKFHREA 184 Query: 188 IKEKGPSCIHRLTF 201 +K GPS +HR +F Sbjct: 185 LKAYGPSPMHRKSF 198 >gi|71275625|ref|ZP_00651910.1| Ribonuclease H [Xylella fastidiosa Dixon] gi|71899522|ref|ZP_00681679.1| Ribonuclease H [Xylella fastidiosa Ann-1] gi|170729566|ref|YP_001774999.1| ribonuclease HII [Xylella fastidiosa M12] gi|238687911|sp|B0U235|RNH2_XYLFM RecName: Full=Ribonuclease HII; Short=RNase HII gi|71163516|gb|EAO13233.1| Ribonuclease H [Xylella fastidiosa Dixon] gi|71730742|gb|EAO32816.1| Ribonuclease H [Xylella fastidiosa Ann-1] gi|167964359|gb|ACA11369.1| Ribonuclease H [Xylella fastidiosa M12] Length = 234 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 116/195 (59%), Gaps = 2/195 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEK 74 + N VAG+DE GRG LAGPVVVAA++ DP+ G+NDSK++S RE LY Sbjct: 8 QHLLNSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPRINGLNDSKQLSPACRERLYAH 67 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A + ID NI++AT+ + AVE + + +SA IDG +P++LPC A Sbjct: 68 IVERALAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPA 127 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++ GD+ +I AASI+AKVTRDR M H +YP YGFD H GY T H + E GP Sbjct: 128 EALVGGDARDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGP 187 Query: 194 SCIHRLTFRPLRNLS 208 HR +F P+R + Sbjct: 188 CLEHRQSFAPVRRML 202 >gi|309775665|ref|ZP_07670664.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53] gi|308916571|gb|EFP62312.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53] Length = 207 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E ++ + GIDE GRG +AGP+VVAA+ P I DSKK+S KKR L+ Sbjct: 6 EYEQAWWQQGKTCIVGIDEAGRGPIAGPLVVAAVAFPPGYFHEEIYDSKKLSDKKRRALF 65 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + A I+ ID+ NI++AT +A+ + Q ++ Sbjct: 66 QDVIHQAKEYHIAIIEPAIIDELNIYRATQNAMQTL--SEQFSMADGVLTDAMPLPGNTK 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD S+SIAAASI+AKVTRD +M K+YP YGF H GYPT H + + Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCIMEAYDKQYPQYGFARHKGYPTKAHIEALHTY 183 Query: 192 GPSC-IHRLTFRPLRNL 207 G ++R ++ P+ + Sbjct: 184 GVVKGLYRESYGPVAAM 200 >gi|238763964|ref|ZP_04624920.1| Ribonuclease HII [Yersinia kristensenii ATCC 33638] gi|238697781|gb|EEP90542.1| Ribonuclease HII [Yersinia kristensenii ATCC 33638] Length = 183 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 106/179 (59%), Gaps = 2/179 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSAS 87 +DEVGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I A S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPKRPIVGLADSKKLSEKRRLSLYDEIIDKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + ID NI AT+ A+ AV L + P LIDG P+ + AV+KGDS I+ Sbjct: 61 PEEIDHLNILHATMLAMQRAVAGLHIAPDYVLIDGNRCPKLAM-PSLAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AASI+AKVTRDR M ++P YGF H GYPTA H + + G + HR +F P++ Sbjct: 120 AASILAKVTRDREMTELDLQFPGYGFAQHKGYPTAVHLEKLAALGATEHHRRSFGPVKR 178 >gi|28198242|ref|NP_778556.1| ribonuclease HII [Xylella fastidiosa Temecula1] gi|182680879|ref|YP_001829039.1| ribonuclease HII [Xylella fastidiosa M23] gi|32129977|sp|Q87EI6|RNH2_XYLFT RecName: Full=Ribonuclease HII; Short=RNase HII gi|238691079|sp|B2I7N7|RNH2_XYLF2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|28056312|gb|AAO28205.1| ribonuclease HII [Xylella fastidiosa Temecula1] gi|182630989|gb|ACB91765.1| Ribonuclease H [Xylella fastidiosa M23] gi|307579347|gb|ADN63316.1| ribonuclease HII [Xylella fastidiosa subsp. fastidiosa GB514] Length = 234 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 116/195 (59%), Gaps = 2/195 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEK 74 + N VAG+DE GRG LAGPVVVAA++ DP+ G+NDSK++S RE LY Sbjct: 8 QHLLNSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPHINGLNDSKQLSPACRERLYAH 67 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A + ID NI++AT+ + AVE + + +SA IDG +P++LPC A Sbjct: 68 IVERALAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPA 127 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++ GD+ +I AASI+AKVTRDR M H +YP YGFD H GY T H + E GP Sbjct: 128 EALVGGDARDPTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGP 187 Query: 194 SCIHRLTFRPLRNLS 208 HR +F P+R + Sbjct: 188 CLEHRQSFAPVRRML 202 >gi|239908101|ref|YP_002954842.1| ribonuclease HII [Desulfovibrio magneticus RS-1] gi|239797967|dbj|BAH76956.1| ribonuclease HII [Desulfovibrio magneticus RS-1] Length = 210 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 75/189 (39%), Positives = 106/189 (56%), Gaps = 8/189 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPV A+IL G+ DSKK++ KRE L I + A + Sbjct: 8 RLVAGVDEAGRGCLAGPVAAGAVILPEIYELPGLTDSKKLTPAKREALAPAIKAQALAWA 67 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC-------QAFA 135 ++ ID+ NI +AT A+ A+ +L++ P A IDG I + + Sbjct: 68 VAFVWPGEIDRINILQATFAAMAKALAHLRLFPGLACIDGNKIIPEAYLGLLAGRLRQEC 127 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VI GD+ +I+AASI+AK RDRL+ + +++P YGF +H GY A H ++ GP Sbjct: 128 VIGGDASVPAISAASILAKTARDRLLDLYDRRHPGYGFAAHKGYGVAVHLDALRRLGPCS 187 Query: 196 IHRLTFRPL 204 IHRLTFR + Sbjct: 188 IHRLTFRGV 196 >gi|15837643|ref|NP_298331.1| ribonuclease HII [Xylella fastidiosa 9a5c] gi|11387105|sp|Q9PEI7|RNH2_XYLFA RecName: Full=Ribonuclease HII; Short=RNase HII gi|9105983|gb|AAF83851.1|AE003941_5 ribonuclease HII [Xylella fastidiosa 9a5c] Length = 234 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 87/195 (44%), Positives = 116/195 (59%), Gaps = 2/195 (1%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEK 74 + N VAG+DE GRG LAGPVVVAA++ DP+ G+NDSK++S RE LY Sbjct: 8 QHLPSSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPRINGLNDSKQLSPACRERLYAH 67 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A + ID NI++AT+ + AVE + + +SA IDG +P++LPC A Sbjct: 68 IVERALAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNRLPKNLPCPA 127 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++ GD+ +I AASI+AKVTRDR M H +YP YGFD H GY T H + E GP Sbjct: 128 EALVGGDARDRTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGP 187 Query: 194 SCIHRLTFRPLRNLS 208 HR +F P+R + Sbjct: 188 CLEHRRSFAPVRKML 202 >gi|148358904|ref|YP_001250111.1| ribonuclease HII [Legionella pneumophila str. Corby] gi|296106952|ref|YP_003618652.1| ribonuclease HII [Legionella pneumophila 2300/99 Alcoy] gi|166226623|sp|A5IBL5|RNH2_LEGPC RecName: Full=Ribonuclease HII; Short=RNase HII gi|148280677|gb|ABQ54765.1| ribonuclease HII [Legionella pneumophila str. Corby] gi|295648853|gb|ADG24700.1| ribonuclease HII [Legionella pneumophila 2300/99 Alcoy] Length = 191 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 79/184 (42%), Positives = 108/184 (58%), Gaps = 4/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A + Sbjct: 8 LMAGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSPKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NIH ATL A+ AVE L + P + ++DG + L A+++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDG-AFTPQLNIPCKAIVQGDSLV 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P Sbjct: 125 PEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCRIHRRSYSP 184 Query: 204 LRNL 207 + +L Sbjct: 185 VADL 188 >gi|51473401|ref|YP_067158.1| ribonuclease HII [Rickettsia typhi str. Wilmington] gi|73917831|sp|Q68XG6|RNH2_RICTY RecName: Full=Ribonuclease HII; Short=RNase HII gi|51459713|gb|AAU03676.1| Endoribonuclease H [Rickettsia typhi str. Wilmington] Length = 193 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 86/193 (44%), Positives = 115/193 (59%), Gaps = 5/193 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + VAG+DE GRG+L GPVV +A+I+D +I GI DSKK+S KR+ L Sbjct: 6 LQYEQKYHN---YIVAGVDEAGRGSLVGPVVASAVIIDKVDIISGIKDSKKLSKNKRDIL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + S + H ID NI +AT A AV NL + P L+DG D Sbjct: 63 YEQITSNYVWSTAIIEHTEIDDINILEATKKACTIAVANLSLKPEKILVDGNMKFSD--V 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++I GD++SLSIAAASIIAKVTRDRLM +YP Y + + GY T +H + I Sbjct: 121 RFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEYPQYLWHKNYGYGTREHIEAINTH 180 Query: 192 GPSCIHRLTFRPL 204 G S HR +F+ Sbjct: 181 GLSSYHRKSFKFC 193 >gi|84502790|ref|ZP_01000903.1| ribonuclease HII [Oceanicola batsensis HTCC2597] gi|84388773|gb|EAQ01643.1| ribonuclease HII [Oceanicola batsensis HTCC2597] Length = 188 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 84/180 (46%), Positives = 117/180 (65%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASH 88 +DEVGRG LAGPV AA+ILD IP G+NDSKK++ +R L E++ + A+IS++ AS Sbjct: 1 MDEVGRGPLAGPVTAAAVILDATCIPVGLNDSKKLTEPRRLALLEELRTCAMISVAHASV 60 Query: 89 QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAA 148 + ID NI +A+ A+ AV L V P LIDG IP L A AVI GD+ LSIAA Sbjct: 61 EEIDDLNILRASHLAMERAVAGLPVRPAHLLIDGNMIPRGLDIPATAVIGGDARCLSIAA 120 Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 ASI AK+ RD +MR +++ YG+D++VGYP+ H ++ G + HR +F+P+ N+ Sbjct: 121 ASIAAKIARDTIMRDLAQQFAGYGWDTNVGYPSKSHISALQSIGVTPHHRKSFKPVHNIL 180 >gi|86132077|ref|ZP_01050673.1| Ribonuclease HII [Dokdonia donghaensis MED134] gi|85817411|gb|EAQ38591.1| Ribonuclease HII [Dokdonia donghaensis MED134] Length = 212 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 71/184 (38%), Positives = 100/184 (54%), Gaps = 8/184 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG LAGPV AA++L + I + DSK+++ KKR+ L I AI S S Sbjct: 13 CGTDEAGRGCLAGPVTAAAVMLPDSFINEILTDSKQLTEKKRDLLKPIIEQQAIAYSFSH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENL-------QVIPRSALIDGRSIPEDLPCQAFAVIK 138 + ID NI A++ A++ ++E + Q P+ L+DG VIK Sbjct: 73 VMMEEIDDINILNASITAMHRSIEGMISTLSRKQKKPQHILVDGNRFKPFTGLDHTTVIK 132 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD L IAAASIIAK RD M H++YP Y + + GYPT +H++ I+ G + HR Sbjct: 133 GDGKYLPIAAASIIAKTERDLFMDRIHEEYPMYNWKKNKGYPTKEHREAIRTYGITKYHR 192 Query: 199 LTFR 202 +F+ Sbjct: 193 KSFK 196 >gi|312112873|ref|YP_004010469.1| ribonuclease H [Rhodomicrobium vannielii ATCC 17100] gi|311218002|gb|ADP69370.1| Ribonuclease H [Rhodomicrobium vannielii ATCC 17100] Length = 239 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 118/196 (60%), Gaps = 6/196 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 RP L+ +AG+DE GRG AGPVV AA+I P G+NDSKK++ +R Sbjct: 40 RPDLALQRKYG----GLIAGVDEAGRGPWAGPVVAAAVIF-HGKPPAGVNDSKKLAPAER 94 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L+ KI ++A + I A + ID+ NI+ AT A+ A+ L P +ALIDG P+ Sbjct: 95 ENLFSKIFAAAHVGIGIAPVELIDEINIYHATHRAMCDAISALAFAPNAALIDGNRCPKL 154 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + A++ GD++S+SIAAASIIAKVTRDR+M +P Y ++ + GY TA H + Sbjct: 155 D-IPSEALVSGDALSISIAAASIIAKVTRDRMMTELASTFPPYRWERNKGYGTADHASAL 213 Query: 189 KEKGPSCIHRLTFRPL 204 +E G + HR +FRP+ Sbjct: 214 REYGVTLHHRRSFRPV 229 >gi|323343781|ref|ZP_08084008.1| ribonuclease HII [Prevotella oralis ATCC 33269] gi|323095600|gb|EFZ38174.1| ribonuclease HII [Prevotella oralis ATCC 33269] Length = 212 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 67/176 (38%), Positives = 100/176 (56%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + +NDSK++S K R EL +I A ++ Sbjct: 23 AGCDEAGRGCLAGSVYAAAVILPKDYDNPLLNDSKQLSVKLRYELRSQIERDATAWAVGI 82 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + ID+ NI KA+ A++ A++ L V P++ ++DG A++KGD + Sbjct: 83 VTPEEIDRINILKASFLAMHRALDQLAVRPQAVIVDGNLFIPYQDLPYTAIVKGDGKYQA 142 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M +YP Y + + GYPT+KH+ I+ G + HR ++ Sbjct: 143 IAAASILAKTYRDDYMEELALEYPQYDWQHNKGYPTSKHRAAIRLHGITPYHRKSY 198 >gi|39934109|ref|NP_946385.1| ribonuclease HII [Rhodopseudomonas palustris CGA009] gi|81563831|sp|Q6NAZ6|RNH2_RHOPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|39647957|emb|CAE26477.1| possible ribonuclease HII [Rhodopseudomonas palustris CGA009] Length = 304 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 89/199 (44%), Positives = 125/199 (62%), Gaps = 1/199 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 P F E + ++ +WP+AG DE GRG LAGPVV AA++LDP +P G++DSK++S Sbjct: 78 AMAPPSFRRERALIKRGIWPIAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSA 137 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +KRE L+E+I ++A +S+ AS + I++ NI +A+L A+ AV L +PR +DGR Sbjct: 138 EKREALFEEICATAQVSVVYASPERINRDNILRASLWALTRAVHALPDLPRHVFVDGRDR 197 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 C AVI GD + SIAAASIIAKV+RDRLM ++ P YGF+ H GY +H Sbjct: 198 LA-TQCDCEAVIGGDGLIASIAAASIIAKVSRDRLMCKLAEQCPGYGFEQHKGYGVPEHL 256 Query: 186 QVIKEKGPSCIHRLTFRPL 204 + GP+ HR F P+ Sbjct: 257 DALARLGPTVHHRRFFAPV 275 >gi|297564923|ref|YP_003683895.1| Ribonuclease H [Meiothermus silvanus DSM 9946] gi|296849372|gb|ADH62387.1| Ribonuclease H [Meiothermus silvanus DSM 9946] Length = 216 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 80/196 (40%), Positives = 109/196 (55%), Gaps = 7/196 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE E + VAG+DE GRGA AGPVVVAA+IL PF DSK +S ++RE L Sbjct: 10 LERDWWEAGLR-VAGVDEAGRGAWAGPVVVAAVILPRGEHPF--RDSKTLSARQREALEA 66 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ + A + A+ I++ I KAT A A+E L V+P + + D + + Sbjct: 67 RVKAVALGWGVGLAAVDEIERLGILKATHRAAQRALECLAVLPDALITDYLRLEREWRGP 126 Query: 133 A---FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A K D S ++AAASI+AKV RDR M +YP YGF +H GY T H++ + Sbjct: 127 ASLLRCPPKADRDSPTVAAASILAKVARDRHMLELEAQYPGYGFATHKGYGTTLHRENLI 186 Query: 190 EKGPSCIHRLTFRPLR 205 GPS +HR TF P+R Sbjct: 187 RLGPSPVHRKTFAPVR 202 >gi|325281756|ref|YP_004254298.1| Ribonuclease H [Odoribacter splanchnicus DSM 20712] gi|324313565|gb|ADY34118.1| Ribonuclease H [Odoribacter splanchnicus DSM 20712] Length = 199 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 68/176 (38%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPV AA+IL N +NDSK++S K+R L I A +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPDNFSDELLNDSKQLSEKQRAGLRPVIEREALAWAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + IDK NI A++ A++ A++ L+V P ++DG + ++KGD +S Sbjct: 73 VDNHEIDKINILNASILAMHRALDQLKVRPGHIIVDGNRFKKYRDIPHLCIVKGDGKYMS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS++AK RD M H +P Y + + GYPT +H++ I++ G + HR +F Sbjct: 133 IAAASVLAKTHRDEYMENLHALFPVYNWKKNKGYPTQEHRKGIEQAGVTEFHRTSF 188 >gi|83589825|ref|YP_429834.1| ribonuclease H [Moorella thermoacetica ATCC 39073] gi|97182952|sp|Q2RJU8|RNH2_MOOTA RecName: Full=Ribonuclease HII; Short=RNase HII gi|83572739|gb|ABC19291.1| RNase HII [Moorella thermoacetica ATCC 39073] Length = 206 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 73/192 (38%), Positives = 105/192 (54%), Gaps = 2/192 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E ++ + + +AG+DE GRG LAGPV AA+IL P G+NDSKK+ +R EL Sbjct: 15 YAWERRLQRQGVARIAGVDEAGRGPLAGPVTAAAVILPPGLFIAGLNDSKKVPPARRREL 74 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I + I S + ID NI A+ A+ A+ L + P LIDG L Sbjct: 75 AAVIKKESLAWGIGWVSVKEIDCLNILAASRWAMRRALSALAIRPDHVLIDGM-ELPGLK 133 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 ++ GD++S SIAAASI+AKV RD LM + YG + GYPT +H++ ++ Sbjct: 134 IPQTPLVGGDALSASIAAASILAKVARDELMVAYDAVFQGYGLAGNKGYPTREHREALRR 193 Query: 191 KGPSCIHRLTFR 202 GP +HR +F+ Sbjct: 194 LGPCALHRRSFK 205 >gi|326204815|ref|ZP_08194669.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782] gi|325985027|gb|EGD45869.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782] Length = 255 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 116/196 (59%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AG+DE GRG LAGPVV AA++L G+NDSKK+S +RE+L Sbjct: 60 LCFERQAISEGFDYIAGVDEAGRGPLAGPVVAAAVVLPKGLTIEGVNDSKKLSEAQREKL 119 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++I A IS +YID+ NI AT A+ A+ L I L+D S+ Sbjct: 120 FDEIKEKALSYGISVVDEKYIDEVNILNATKMAMTEALNRLDPIADCILLDAVSLDNIST 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGDS+SLSIAAASI+AKVTRDRL+ KYP YGF +H GY T +H IK+ Sbjct: 180 -KQVPIIKGDSLSLSIAAASILAKVTRDRLLMEYDAKYPQYGFAAHKGYGTPQHISAIKK 238 Query: 191 KGPSCIHRLTFRPLRN 206 G IHRL+F ++N Sbjct: 239 FGLCPIHRLSF--VKN 252 >gi|210622543|ref|ZP_03293236.1| hypothetical protein CLOHIR_01184 [Clostridium hiranonis DSM 13275] gi|210154178|gb|EEA85184.1| hypothetical protein CLOHIR_01184 [Clostridium hiranonis DSM 13275] Length = 256 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 84/190 (44%), Positives = 111/190 (58%), Gaps = 2/190 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E EK +AG+DE GRG LAGPVV A ++L GINDSKK+S KR EL+ Sbjct: 62 AYENEGYEKGYTYIAGVDEAGRGPLAGPVVAAVVVLKQGTKIPGINDSKKLSEDKRNELF 121 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A I ++ ID++NI AT A+ A+ L+ P L D D+ Sbjct: 122 DIIKEEALDYGIGIVGNEEIDEYNILNATYMAMRKALNCLKKQPDYILADAV-HIPDVDI 180 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++IKGD+ S+SIAAASI+AKVTRD LM + YP+YGF H GY TA+H + I E Sbjct: 181 EQNSIIKGDAKSISIAAASILAKVTRDSLMYQYDEIYPEYGFAHHKGYGTAEHYKAIDEN 240 Query: 192 GPSCIHRLTF 201 G + IHR +F Sbjct: 241 GITPIHRKSF 250 >gi|319900379|ref|YP_004160107.1| RNase HII [Bacteroides helcogenes P 36-108] gi|319415410|gb|ADV42521.1| RNase HII [Bacteroides helcogenes P 36-108] Length = 201 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 102/176 (57%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL + +NDSK+++ K+R L E I A ++ Sbjct: 13 AGCDEAGRGCLAGAVYAAAVILPKDFKNELLNDSKQLTEKQRYLLREVIEKEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S + ID+ NI A+ A++ A++ L V P+ LIDG + ++KGD LS Sbjct: 73 VSPEEIDRINILNASFLAMHRAIDGLSVHPQHLLIDGNRFKKYRDLPHTTIVKGDGKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H++YP Y ++ + GYPT KH+ I +G + HR+TF Sbjct: 133 IAAASILAKTYRDDYMNGLHEEYPYYDWNHNKGYPTKKHRAAIAVRGTTPYHRMTF 188 >gi|325106085|ref|YP_004275739.1| RNase HII [Pedobacter saltans DSM 12145] gi|324974933|gb|ADY53917.1| RNase HII [Pedobacter saltans DSM 12145] Length = 198 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 71/177 (40%), Positives = 99/177 (55%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPV AA+IL + + DSK+++ K R+ L +I A +++ Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPKDFFHPLLTDSKQLTDKDRKALRIEIEEKALAFAVAP 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 H+ ID+ NI A+ A++ A++ L + P +IDG VIKGD S Sbjct: 73 VDHEEIDRINILNASFLAMHKALDKLTIRPEFIIIDGNRFKSYNNIGHQCVIKGDGKYYS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M H+++P Y ++ + GYPT KH+ I E G HR TFR Sbjct: 133 IAAASILAKTYRDDYMDALHEEFPLYDWNKNKGYPTTKHRLAILEHGICTYHRKTFR 189 >gi|311105997|ref|YP_003978850.1| ribonuclease HII [Achromobacter xylosoxidans A8] gi|310760686|gb|ADP16135.1| ribonuclease HII [Achromobacter xylosoxidans A8] Length = 202 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 79/184 (42%), Positives = 108/184 (58%), Gaps = 2/184 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE GRG LAG V AA+IL+P G+ DSK + RE L +I + I+S Sbjct: 18 AGVDEAGRGPLAGAVYAAAVILNPARPIAGLADSKVLKAATREALALEIQEFSLAWCIAS 77 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS ID NI +AT+ A+ AV+ L +P+ AL+DG L C VIKGD++ + Sbjct: 78 ASVAEIDSMNILRATMLAMQRAVQGLSTMPQLALVDGN-QAPKLGCTVQTVIKGDALVPA 136 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AK RD + H YP Y FD H GY TA H ++++E GP HR +F P++ Sbjct: 137 ISAASILAKTARDADLLRLHALYPQYAFDQHKGYGTALHLEMLREHGPCAEHRRSFAPIK 196 Query: 206 NLSV 209 S+ Sbjct: 197 AFSL 200 >gi|169338113|ref|ZP_02622674.2| ribonuclease HII [Clostridium botulinum C str. Eklund] gi|169294134|gb|EDS76267.1| ribonuclease HII [Clostridium botulinum C str. Eklund] Length = 272 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 112/196 (57%), Gaps = 8/196 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHK 66 +E + +AG DEVGRG LAGP+V A+++LD +N+ INDSKKIS + Sbjct: 71 YEFDKKYIN-GGTYLAGADEVGRGPLAGPIVAASVVLDLDTINDDNLILRINDSKKISFE 129 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 REEL + I A+ SI S++ IDK I + + +V L++ P L DG I Sbjct: 130 VREELSKIIRKRAVSYSIQEISNEEIDKKGIAWCNNEVLKRSVCELKISPDLVLSDGYKI 189 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + V+KGD+ S SIA ASIIAKV RD LM K YP+Y F+ ++GY T +H Sbjct: 190 K-NCTISNEFVVKGDAKSASIACASIIAKVYRDNLMIEYSKIYPEYMFNKNMGYGTKEHI 248 Query: 186 QVIKEKGPSCIHRLTF 201 + IK+ G + IHR +F Sbjct: 249 EAIKKFGCTPIHRKSF 264 >gi|124267155|ref|YP_001021159.1| ribonuclease HII [Methylibium petroleiphilum PM1] gi|189043524|sp|A2SH85|RNH22_METPP RecName: Full=Ribonuclease HII 2; Short=RNase HII 2 gi|124259930|gb|ABM94924.1| RNase HII [Methylibium petroleiphilum PM1] Length = 217 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 83/205 (40%), Positives = 117/205 (57%), Gaps = 4/205 (1%) Query: 8 ERPHFELEAMVREKN--MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 E P + + +AG+DE GRG LAGPVV AA+ILD G+ DSK +S Sbjct: 10 EAPGLPTDRQLGLSWDVPGLLAGVDEAGRGPLAGPVVAAAVILDDVQPIRGLGDSKVLSE 69 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + RE L+++I + A I+ AS + ID NI +ATL A+ AV L++ P L+DG Sbjct: 70 RVRERLFDEIRAKALCCCIAEASVEEIDTLNILQATLLAMRRAVAGLRLRPNKVLVDGNR 129 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P A A++KGD+ +I+AASI+AKV RDRL H+ +P YGF H GYPT H Sbjct: 130 LPVLQ-VPAEAIVKGDAKVAAISAASILAKVHRDRLCLALHEAHPQYGFAGHKGYPTPDH 188 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209 ++ G HR +F P+R + + Sbjct: 189 LAALRVHGACGAHRRSFAPVREVLL 213 >gi|82750847|ref|YP_416588.1| ribonuclease HII [Staphylococcus aureus RF122] gi|97189311|sp|Q2YXM2|RNH2_STAAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|82656378|emb|CAI80797.1| ribonuclease HII [Staphylococcus aureus RF122] Length = 255 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 4/197 (2%) Query: 14 LEAMVREKN-MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + ++N + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKENPNAIICGIDEVGRGPLAGPVVACAPILNSNHNYLGLDDSKKVPVTKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAFGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ + GY T +H I + Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEKNAGYGTKQHLLAIDDI 238 Query: 192 GPSCIHRLTFRPLRNLS 208 G HR +F P+++L Sbjct: 239 GIMKEHRKSFEPIKSLL 255 >gi|158337229|ref|YP_001518404.1| ribonuclease HII [Acaryochloris marina MBIC11017] gi|189043525|sp|B0CAM1|RNH2_ACAM1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|158307470|gb|ABW29087.1| ribonuclease HII [Acaryochloris marina MBIC11017] Length = 198 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 110/185 (59%), Gaps = 5/185 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRGAL GPVV A +IL I G+ DSKK+S ++R L +I A Sbjct: 8 IAGVDEVGRGALFGPVVAATVILSDGAIEQLVAQGMTDSKKLSPQRRMILMNQIREVATG 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + AS ID+ NI +A+L A+ AV L P+ L+DG +LP V+KGD Sbjct: 68 FRVGMASVYEIDRLNILQASLLAMRRAVLGLPSTPQLCLVDGNQRIPNLPVPQRTVVKGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 IAAASI+AKV RD+L+ ++YP Y S+ GY +AKH+Q ++E GP+ HRL+ Sbjct: 128 QSEPEIAAASILAKVWRDQLIVRLDQRYPGYDLASNKGYGSAKHRQALRELGPTRQHRLS 187 Query: 201 FRPLR 205 F P + Sbjct: 188 FAPCQ 192 >gi|187917927|ref|YP_001883490.1| ribonuclease HII [Borrelia hermsii DAH] gi|238689305|sp|B2S1N3|RNH2_BORHD RecName: Full=Ribonuclease HII; Short=RNase HII gi|119860775|gb|AAX16570.1| ribonuclease HII [Borrelia hermsii DAH] Length = 181 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 112/181 (61%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GPV+ AA+I N N ++DSKK+ KRE L I ++ + Sbjct: 1 MICGIDEVGRGCIFGPVLSAAVIFKGNPNFLNELDDSKKLKKAKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S++ IDK NIH A+L A+ A E L + L+DG+ IP+ + A+IKGDSI Sbjct: 61 AEVSNETIDKINIHHASLLAMQIAYEKLDINCDLVLVDGKFIPKIKAKKIQAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM +K YP Y + + GYPT +H++ IK+ G S +HR +F+ Sbjct: 121 NEIKAASIIAKVQRDKLMDEYNKIYPLYALNKNKGYPTKEHKEAIKKHGISNLHRRSFKF 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|316932574|ref|YP_004107556.1| ribonuclease H [Rhodopseudomonas palustris DX-1] gi|315600288|gb|ADU42823.1| Ribonuclease H [Rhodopseudomonas palustris DX-1] Length = 299 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 89/196 (45%), Positives = 124/196 (63%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP IP G++DSK++S +KR Sbjct: 76 PPSFRRERALIKRGIWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKRLSAEKR 135 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L+E+I ++A +++ AS + I++ NI +A+L A+ AV L +P+ +DGR Sbjct: 136 EALFEEICATAQVAVVYASPERINRDNILRASLWALTRAVHALPELPKQVFVDGRDRLA- 194 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 C AVI GD + SIAAASIIAKV+RDRLM ++ P YGF+ H GY H + Sbjct: 195 TRCDCEAVIGGDGLIASIAAASIIAKVSRDRLMCRLAEQCPGYGFEQHKGYGVPDHLDAL 254 Query: 189 KEKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 255 ARLGPTVHHRRAFAPV 270 >gi|152989967|ref|YP_001355689.1| ribonuclease HII [Nitratiruptor sp. SB155-2] gi|151421828|dbj|BAF69332.1| ribonuclease HII [Nitratiruptor sp. SB155-2] Length = 182 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 67/178 (37%), Positives = 95/178 (53%), Gaps = 6/178 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+V+A ++ ++DSKK+S + RE+LYEKI ++ +I Sbjct: 3 ICGIDEAGRGPLAGPLVMAGVVFTQRVYK--LDDSKKLSPQAREKLYEKIINATQYTIVI 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ I + + L + + E VIK D Sbjct: 61 IDNDTIDQIGISACISQGLKEIISALHAKRYIFDGNSKFGVE----NIEPVIKADQTIKE 116 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + AASI+AKVTRDR+M K+YP+YGF H GY T +H + I+ G S IHR +FRP Sbjct: 117 VMAASILAKVTRDRIMCEMDKEYPEYGFCKHKGYGTKEHIEAIQRYGFSPIHRKSFRP 174 >gi|311748115|ref|ZP_07721900.1| ribonuclease HII [Algoriphagus sp. PR1] gi|126574759|gb|EAZ79140.1| ribonuclease HII [Algoriphagus sp. PR1] Length = 200 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 85/185 (45%), Positives = 113/185 (61%), Gaps = 2/185 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DEVGRG LAGPVV AA+IL + INDSKK+ K+R++L E+I + ++ Sbjct: 14 AGCDEVGRGCLAGPVVAAAVILPSDYSNEWINDSKKLGKKQRQDLIEEIKEKSLSWKVAE 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID+ NI A+ A+ A+E L+V P LIDG L VIKGD S Sbjct: 74 ASVEEIDQINILNASFLAMSRAIEGLEVSPEHLLIDGNRFKSHLTLPFTCVIKGDGKFAS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL- 204 IAAASI+AKV RD LM ++P YG++ +VGYPT H++ I+E GP HR +F+ L Sbjct: 134 IAAASILAKVYRDELMEKLALEHPHYGWERNVGYPTKAHREGIREHGPCIWHRKSFQLLP 193 Query: 205 RNLSV 209 R L + Sbjct: 194 RQLDL 198 >gi|297587481|ref|ZP_06946125.1| ribonuclease H [Finegoldia magna ATCC 53516] gi|297574170|gb|EFH92890.1| ribonuclease H [Finegoldia magna ATCC 53516] Length = 207 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 75/201 (37%), Positives = 104/201 (51%), Gaps = 15/201 (7%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREEL 71 E E + + G+DEVGRG LAGPVV AII+ N I G+ DSKK+S KKR + Sbjct: 8 EFEEEL-------ICGVDEVGRGPLAGPVVTCAIIMPKNCEIIDGVTDSKKLSEKKRIKF 60 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----SIP 126 + I A S++ ID+ NI +A ++ AVE+L+ + + Sbjct: 61 KDMILDQALAYSVNFVDQSVIDEINIKQANRLSMKRAVESLKTKDNKFIKPDLIVIDAEK 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D + + +KGD I+ ASI+AKV RD M+ YP YGF+ H GY T H++ Sbjct: 121 IDTDIKQMSFVKGDEKLYPISCASIVAKVIRDEYMKDMAVIYPQYGFEKHKGYGTKLHRE 180 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +I E G +HR TF LR L Sbjct: 181 MILEHGECPLHRKTF--LRKL 199 >gi|15827847|ref|NP_302110.1| ribonuclease HII [Mycobacterium leprae TN] gi|221230324|ref|YP_002503740.1| ribonuclease HII [Mycobacterium leprae Br4923] gi|7227915|sp|O33022|RNH2_MYCLE RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807982|sp|B8ZRW3|RNH2_MYCLB RecName: Full=Ribonuclease HII; Short=RNase HII gi|2251163|emb|CAB10634.1| ribonuclease HII [Mycobacterium leprae] gi|13093399|emb|CAC30562.1| ribonuclease HII [Mycobacterium leprae] gi|219933431|emb|CAR71706.1| ribonuclease HII [Mycobacterium leprae Br4923] Length = 240 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 66/196 (33%), Positives = 97/196 (49%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + LE ++ + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK+S K RE L Sbjct: 21 WTLEYELQRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGRLEESLDDSKKLSAKGREML 80 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ + + + ++ L Sbjct: 81 FPLICRYALAYHVVFIPSVEVDRHGVQVANIEGMRRAVAGLSVRPGYVLSDGFRVPGLSV 140 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + V+ GD++ IAAAS++AKV+RDRLM YP YGF +H GY T H + + Sbjct: 141 PSLPVVGGDAVVACIAAASVLAKVSRDRLMVAMDADYPGYGFAAHKGYCTRAHSLALTQL 200 Query: 192 GPSCIHRLTFRPLRNL 207 GP HR +F +R + Sbjct: 201 GPCPEHRYSFINVRRI 216 >gi|91975688|ref|YP_568347.1| ribonuclease HII [Rhodopseudomonas palustris BisB5] gi|122969169|sp|Q13BU3|RNH2_RHOPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|91682144|gb|ABE38446.1| RNase HII [Rhodopseudomonas palustris BisB5] Length = 298 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 130/196 (66%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP +P G++DSK+++ +R Sbjct: 70 QPSFRRERALIKRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLTADRR 129 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EEL+E+I ++A ++++ AS + I++ NI +A+L A+ AV L +P+ +DGR Sbjct: 130 EELFEEICATAQVAVAYASPERINRDNILRASLWALTRAVHALPDLPQHVFVDGRDRLA- 188 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 C++ AV+ GD + SIAAASIIAKV+RDRLM ++ P YGF+SH GY +H + Sbjct: 189 TRCESEAVVGGDGLIASIAAASIIAKVSRDRLMCRLAQECPGYGFESHKGYGVPEHLAAL 248 Query: 189 KEKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 249 ARLGPTVHHRRFFAPV 264 >gi|220928167|ref|YP_002505076.1| ribonuclease HII [Clostridium cellulolyticum H10] gi|254807971|sp|B8I7T9|RNH2_CLOCE RecName: Full=Ribonuclease HII; Short=RNase HII gi|219998495|gb|ACL75096.1| ribonuclease HII/HIII [Clostridium cellulolyticum H10] Length = 255 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 86/196 (43%), Positives = 114/196 (58%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AG+DE GRG LAGPVV AA++L GINDSKK+S +RE+L Sbjct: 60 LSFERQAISEGFNYIAGVDEAGRGPLAGPVVAAAVVLPNGLTIEGINDSKKLSESQREKL 119 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + +I A IS +YID+ NI AT A+ A+ L+ L+D + Sbjct: 120 FSEIKEKALSYGISVIDEKYIDEVNILNATKRAMTEALSQLEPTADCILLDAVRLDNIST 179 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +IKGDS+SLSIAAASI+AKVTRDRL+ KYP YGF +H GY T +H IK+ Sbjct: 180 -KQVPIIKGDSLSLSIAAASILAKVTRDRLLTEYDAKYPQYGFAAHKGYGTPQHISAIKK 238 Query: 191 KGPSCIHRLTFRPLRN 206 G IHRL+F ++N Sbjct: 239 FGLCPIHRLSF--VKN 252 >gi|46398965|gb|AAS92168.1| RNase H ribonuclease [Legionella pneumophila] gi|46398967|gb|AAS92169.1| RNase H ribonuclease [Legionella pneumophila] Length = 191 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 79/184 (42%), Positives = 108/184 (58%), Gaps = 4/184 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAG VV AA+IL G+ DSKK+S K+R L +I A + Sbjct: 8 LMAGVDEVGRGPLAGAVVTAAVILKK--PIDGLTDSKKLSSKQRNLLAIRIKEEALAFAY 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NIH ATL A+ AVE L + P + ++DG + L A+++GDS+ Sbjct: 66 GRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVVVDG-AFTPQLNVPCKAIVQGDSLI 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M K YP YGF H GY T H++ + GP IHR ++ P Sbjct: 125 PEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRRSYSP 184 Query: 204 LRNL 207 + +L Sbjct: 185 VADL 188 >gi|255524250|ref|ZP_05391209.1| Ribonuclease H [Clostridium carboxidivorans P7] gi|296185372|ref|ZP_06853782.1| ribonuclease HII [Clostridium carboxidivorans P7] gi|255512075|gb|EET88356.1| Ribonuclease H [Clostridium carboxidivorans P7] gi|296050206|gb|EFG89630.1| ribonuclease HII [Clostridium carboxidivorans P7] Length = 293 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 79/203 (38%), Positives = 115/203 (56%), Gaps = 11/203 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHK 66 + + N +AG+DEVGRG LAGP+ +++L+ + F GI DSKK+SH Sbjct: 90 YSFDKDFG--NYVYIAGVDEVGRGPLAGPIAAGSVVLNLRSHDFKDLLLGIKDSKKLSHD 147 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 RE L + I + +I +IS ++ ID+ I + + A L++ P L DG ++ Sbjct: 148 TRERLSKLIKAKSISYNISVINNAEIDERGIAWCNNEVLRRAASGLKITPDLVLSDGYAV 207 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 +L + VIKGD+ S SIA ASIIAKV RD LM+ K YP YGF+ + GY T +H Sbjct: 208 K-NLNIENEFVIKGDAKSASIACASIIAKVYRDNLMQEYAKIYPQYGFERNSGYGTEEHI 266 Query: 186 QVIKEKGPSCIHRLTFRPLRNLS 208 + IK+ G IHR +F L+N+ Sbjct: 267 EAIKKYGICKIHRKSF--LKNIL 287 >gi|167630260|ref|YP_001680759.1| ribonuclease hii [Heliobacterium modesticaldum Ice1] gi|167593000|gb|ABZ84748.1| ribonuclease hii [Heliobacterium modesticaldum Ice1] Length = 205 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 78/190 (41%), Positives = 109/190 (57%), Gaps = 1/190 (0%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E+++R K +AG+DE GRG+LAGPVV AA+IL + G+NDSKK+S +RE L Sbjct: 7 ERESLLRRKGFHVIAGVDEAGRGSLAGPVVAAAVILPLGCMMEGLNDSKKLSPARREALA 66 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I A I S Q ID+ I +T A+ A++ L P ++DG Sbjct: 67 VEIKRLALAWGIGIVSSQVIDRIGIVPSTFRAMSLAIDRLGDRPDYLIVDGNQKVPGYEG 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A+I GD+++ +AAASI+AKV RD LM+ +P YGF+ H GY T H+ I E+ Sbjct: 127 TQEALIDGDALAAPVAAASILAKVVRDGLMKRYSLFFPGYGFEQHKGYGTQAHRSAILEQ 186 Query: 192 GPSCIHRLTF 201 G +HR TF Sbjct: 187 GTCLLHRETF 196 >gi|294675016|ref|YP_003575632.1| ribonuclease HII [Prevotella ruminicola 23] gi|294473926|gb|ADE83315.1| ribonuclease HII [Prevotella ruminicola 23] Length = 209 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 70/182 (38%), Positives = 104/182 (57%), Gaps = 7/182 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL +NDSK++S KKR +L E I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPEGYQNELLNDSKQLSEKKRYQLREMIERDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL------PCQAFAVIKG 139 + + IDK NI A++ A++ A++ L+V P + ++DG ++KG Sbjct: 73 VTPEEIDKINILNASILAMHRALDQLKVRPEAIIVDGNRFKPYKEPANGETLPHTTIVKG 132 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D L+IAAASI+AK RD M ++YP Y + S+ GYPT KH++ IK+ G + HR Sbjct: 133 DGKYLAIAAASILAKTYRDDYMNQLAEEYPQYDWRSNKGYPTKKHREAIKQHGITPYHRK 192 Query: 200 TF 201 ++ Sbjct: 193 SY 194 >gi|254179336|ref|ZP_04885935.1| ribonuclease HII [Burkholderia pseudomallei 1655] gi|184209876|gb|EDU06919.1| ribonuclease HII [Burkholderia pseudomallei 1655] Length = 214 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 126/198 (63%), Gaps = 7/198 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P + + V G+DE GRG LAGPVV AA++LDP G++DSK +S KKR Sbjct: 16 QPALDFD-----APGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKR 70 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L+++I + A S++SAS + ID NI AT+ A+ AVE L V+P A IDG P Sbjct: 71 ERLFDEIVAHALAYSVASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM 130 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ A++ GD++ SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H Sbjct: 131 LA-IRSEAIVGGDALVPSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAA 189 Query: 188 IKEKGPSCIHRLTFRPLR 205 ++E GP HR +F P+R Sbjct: 190 LREHGPCEHHRRSFAPVR 207 >gi|253581825|ref|ZP_04859049.1| ribonuclease HII [Fusobacterium varium ATCC 27725] gi|251836174|gb|EES64711.1| ribonuclease HII [Fusobacterium varium ATCC 27725] Length = 239 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 85/180 (47%), Positives = 110/180 (61%), Gaps = 4/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPVV AA+ I D N+ INDSK++S KKRE+LY+ + I I Sbjct: 54 IIGVDEAGRGPLAGPVVAAAVKIKDYNSELDEINDSKQLSEKKREKLYDVVKEHFYIGIG 113 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL---IDGRSIPEDLPCQAFAVIKGDS 141 A + ID+ NI AT A+ A+ENL+ +DG + + VIKGD Sbjct: 114 VADSKEIDEINILNATFLAMRRALENLKKECSGEYLVLVDGNFKIREYKGRQEPVIKGDG 173 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SLSIAAASIIAKVTRDR+MR KYP YGF+ H GY T +H+ I++ G +HR +F Sbjct: 174 KSLSIAAASIIAKVTRDRIMREEAIKYPLYGFEKHKGYGTKQHRDAIEKYGVLEMHRKSF 233 >gi|217076334|ref|YP_002334050.1| ribonuclease HII [Thermosipho africanus TCF52B] gi|226736825|sp|B7IF45|RNH2_THEAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|217036187|gb|ACJ74709.1| ribonuclease HII [Thermosipho africanus TCF52B] Length = 220 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 110/180 (61%), Gaps = 2/180 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 VAG+DE GRG L GPVV AA+IL+ G++DSKK++ +KRE+L+ +I + +IS Sbjct: 2 IVAGVDEAGRGPLFGPVVAAAVILNEE--IDGLDDSKKLTSRKREKLFLEIIKKSYFAIS 59 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A+ IDK NI AT A+ A+E L+ + +L ++KGDS+ Sbjct: 60 IATADEIDKFNILHATEIAMDRALERLRKKINFDIAFVDGKNLNLKFPFKCIVKGDSLVK 119 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RDR++ KK+ Y + H GYPT H ++IKE G + +HRLT++P+ Sbjct: 120 EISAASILAKVVRDRIIVSYAKKFSSYMLEKHKGYPTQLHLKLIKEHGLTPLHRLTYKPV 179 >gi|117619478|ref|YP_855728.1| ribonuclease HII [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560885|gb|ABK37833.1| ribonuclease HII [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 211 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP N G+NDSKK+S KKR L+++I A S Sbjct: 24 RLVAGVDEVGRGPLVGDVVTAAVILDPANPIIGLNDSKKLSEKKRLALFDEIKEKALAWS 83 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS ID+ NI AT+ A+ AV L + P IDG P +A AV+KGDS+ Sbjct: 84 VGRASPAEIDELNILHATMLAMQRAVAGLSIAPELVFIDGNRCPSLSM-EARAVVKGDSL 142 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRD M ++P+YGF H GYPTA+H ++ E+GP +R +F+ Sbjct: 143 VAAISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFK 202 Query: 203 PLRN 206 P+R Sbjct: 203 PVRR 206 >gi|189043616|sp|A0KHH7|RNH2_AERHH RecName: Full=Ribonuclease HII; Short=RNase HII Length = 196 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 88/184 (47%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP N G+NDSKK+S KKR L+++I A S Sbjct: 9 RLVAGVDEVGRGPLVGDVVTAAVILDPANPIIGLNDSKKLSEKKRLALFDEIKEKALAWS 68 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + AS ID+ NI AT+ A+ AV L + P IDG P +A AV+KGDS+ Sbjct: 69 VGRASPAEIDELNILHATMLAMQRAVAGLSIAPELVFIDGNRCPSLSM-EARAVVKGDSL 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRD M ++P+YGF H GYPTA+H ++ E+GP +R +F+ Sbjct: 128 VAAISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFK 187 Query: 203 PLRN 206 P+R Sbjct: 188 PVRR 191 >gi|313901979|ref|ZP_07835395.1| Ribonuclease H [Thermaerobacter subterraneus DSM 13965] gi|313467768|gb|EFR63266.1| Ribonuclease H [Thermaerobacter subterraneus DSM 13965] Length = 271 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 77/182 (42%), Positives = 107/182 (58%), Gaps = 2/182 (1%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 VAG+DEVGRG LAGPVV A+IL G++DSK++ RE+L +I A+ Sbjct: 85 AGDLQVAGVDEVGRGCLAGPVVAGAVILPAGAHLLGLDDSKRLPPAAREQLAARIRQQAV 144 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ A+ Q ID NI AT A+ A++ L V+P+ L+DGR P DL A++ G Sbjct: 145 AWAVGLATPQEIDALNIWHATRLAMRRALDALAVMPQRVLVDGR-PPGDLGYPLDALVDG 203 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ +IAAAS++AKV RD M ++YP YGF H GY TA H++ + GP HR Sbjct: 204 DARYAAIAAASVVAKVYRDAWMSRLDREYPAYGFAQHKGYATAAHRRALARYGPCPEHRR 263 Query: 200 TF 201 +F Sbjct: 264 SF 265 >gi|330752580|emb|CBL87526.1| ribonuclease HII [uncultured Flavobacteria bacterium] Length = 191 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE GRG LAGPV A +IL INDSK ++ KKR L I A ++ Sbjct: 12 AGVDEAGRGCLAGPVTAAVVILPKGITLPQINDSKILTEKKRYNLRSLIEKCAIDFQVAH 71 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 IDK NI +T+ A++ A++ L+ P+ ++DG ++KGD + Sbjct: 72 VFQDEIDKINILNSTIKAMHLAIKKLKETPQYIIVDGNKFYPYKDVPYKCIVKGDGKYQN 131 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD MR ++P+YG++ + GYPT H++ I++ G + HR +F+ Sbjct: 132 IAAASILAKTYRDDYMRKIEYEFPEYGWNKNKGYPTVTHRKAIEKFGITEHHRNSFK 188 >gi|53719754|ref|YP_108740.1| ribonuclease HII [Burkholderia pseudomallei K96243] gi|126441923|ref|YP_001059454.1| ribonuclease HII [Burkholderia pseudomallei 668] gi|237812793|ref|YP_002897244.1| ribonuclease HII [Burkholderia pseudomallei MSHR346] gi|254197441|ref|ZP_04903863.1| ribonuclease HII [Burkholderia pseudomallei S13] gi|81379508|sp|Q63T26|RNH2_BURPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225177|sp|A3NAT3|RNH2_BURP6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|52210168|emb|CAH36147.1| ribonuclease HII [Burkholderia pseudomallei K96243] gi|126221416|gb|ABN84922.1| ribonuclease HII [Burkholderia pseudomallei 668] gi|169654182|gb|EDS86875.1| ribonuclease HII [Burkholderia pseudomallei S13] gi|237504589|gb|ACQ96907.1| ribonuclease HII [Burkholderia pseudomallei MSHR346] Length = 214 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 125/198 (63%), Gaps = 7/198 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P + + V G+DE GRG LAGPVV AA++LDP G++DSK +S KKR Sbjct: 16 QPALDFD-----APGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKR 70 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L+++I A S++SAS + ID NI AT+ A+ AVE L V+P A IDG P Sbjct: 71 ERLFDEIVVHALAYSVASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM 130 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ A++ GD++ SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H Sbjct: 131 LA-IRSEAIVGGDALVPSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAA 189 Query: 188 IKEKGPSCIHRLTFRPLR 205 ++E GP HR +F P+R Sbjct: 190 LREHGPCEHHRRSFAPVR 207 >gi|302380879|ref|ZP_07269341.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3] gi|302311257|gb|EFK93276.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3] Length = 207 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 77/201 (38%), Positives = 105/201 (52%), Gaps = 15/201 (7%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREEL 71 E E + + GIDEVGRG LAGPVV AII+ N I G+ DSKK+S KKR + Sbjct: 8 EFEEEL-------ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKF 60 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----SIP 126 + I + A S+ ID+ NI +AT ++ AVE+L+ + + Sbjct: 61 KDMILNQALAYSVDFVDQGVIDEINIKQATRLSMKKAVESLKTKDNKFIKPDLIVIDAEE 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D + + +KGD I+ ASI+AKV RD M+ YP YGF+ H GY T H++ Sbjct: 121 IDTDIKQMSFVKGDEKLYPISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYGTKLHRE 180 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +I E G +HR TF LR L Sbjct: 181 MILEYGECPLHRKTF--LRKL 199 >gi|169824229|ref|YP_001691840.1| ribonuclease HII [Finegoldia magna ATCC 29328] gi|167831034|dbj|BAG07950.1| ribonuclease HII [Finegoldia magna ATCC 29328] Length = 207 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 77/201 (38%), Positives = 106/201 (52%), Gaps = 15/201 (7%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREEL 71 E E + + GIDEVGRG LAGPVV AII+ N I G+ DSKK+S KKR + Sbjct: 8 EFEEEL-------ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIEGVTDSKKLSEKKRIKF 60 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----SIP 126 + I + A S++ ID+ NI +AT ++ AVE+L+ + + Sbjct: 61 KDMILNQALAYSVNFVDQGVIDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEE 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D + + +KGD I+ ASI+AKV RD M+ YP YGF+ H GY T H++ Sbjct: 121 IDTDIKQMSFVKGDEKLYPISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYGTKLHRE 180 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +I E G +HR TF LR L Sbjct: 181 MILEHGECPLHRKTF--LRKL 199 >gi|304414200|ref|ZP_07395568.1| Ribonuclease HII [Candidatus Regiella insecticola LSR1] gi|304283414|gb|EFL91810.1| Ribonuclease HII [Candidatus Regiella insecticola LSR1] Length = 224 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 108/182 (59%), Gaps = 2/182 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 +AG+DEVGR L G VV AA+ILDP+ G+ DSKK+S KKR LY+ IT A S Sbjct: 28 KLIAGVDEVGRVPLVGAVVTAAVILDPSQPIEGLADSKKLSEKKRRALYQAITQKARSWS 87 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I A + ID+ NI ATL A+ AV L + P LIDG P AV+KGDS+ Sbjct: 88 IGRAEPEEIDRLNILNATLLAMQRAVAGLDLTPDYVLIDGNRCPHLSM-PTMAVVKGDSL 146 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AASI+AKVTRDR M +++P YGF H GYPTA H + + G HR +F Sbjct: 147 VAEISAASILAKVTRDREMVALDQRFPGYGFAQHKGYPTALHLKKLAALGVIPDHRRSFA 206 Query: 203 PL 204 P+ Sbjct: 207 PV 208 >gi|168061299|ref|XP_001782627.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665860|gb|EDQ52530.1| predicted protein [Physcomitrella patens subsp. patens] Length = 655 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 108/238 (45%), Gaps = 36/238 (15%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIND---- 59 S+ + P +LE + E VAG+DE GRG LAGPVV AA I+ + G Sbjct: 411 KSLKKFPSRDLEMKLWELGFRNVAGVDEAGRGPLAGPVVAAACIIPASATIPGKICFCVS 470 Query: 60 --SKKISHKKREELYEKITSSAII------------------------SISSASHQYIDK 93 S + S +EE Y ++ A I ID+ Sbjct: 471 QWSCRASGPCQEEPYVRLNGVAQWKETFTVHHLWMSRELWCSWFRVAGQIHVVDAAKIDE 530 Query: 94 HNIHKATLDAIYHAVENLQV------IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 NI +ATL A+ V+ L+ + R E +A VIKGD+ IA Sbjct: 531 INILQATLLAMSTCVKKLRKERGGEAPDYILIDGNRIPDELSKEEAQFVIKGDAECHVIA 590 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 AASI+AKVTRDR+M +++P YGF +H GY TA H + GP IHR +F PL+ Sbjct: 591 AASILAKVTRDRMMVDYDRRWPVYGFKAHKGYGTAAHIGALLNHGPCDIHRRSFAPLK 648 >gi|167720149|ref|ZP_02403385.1| ribonuclease HII [Burkholderia pseudomallei DM98] gi|167739156|ref|ZP_02411930.1| ribonuclease HII [Burkholderia pseudomallei 14] gi|167824746|ref|ZP_02456217.1| ribonuclease HII [Burkholderia pseudomallei 9] gi|167903248|ref|ZP_02490453.1| ribonuclease HII [Burkholderia pseudomallei NCTC 13177] gi|167911490|ref|ZP_02498581.1| ribonuclease HII [Burkholderia pseudomallei 112] gi|226200132|ref|ZP_03795678.1| ribonuclease HII [Burkholderia pseudomallei Pakistan 9] gi|254297220|ref|ZP_04964673.1| ribonuclease HII [Burkholderia pseudomallei 406e] gi|157807288|gb|EDO84458.1| ribonuclease HII [Burkholderia pseudomallei 406e] gi|225927816|gb|EEH23857.1| ribonuclease HII [Burkholderia pseudomallei Pakistan 9] Length = 214 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 126/198 (63%), Gaps = 7/198 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P + + V G+DE GRG LAGPVV AA++LDP G++DSK +S KKR Sbjct: 16 QPALDFD-----APGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKR 70 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L+++I + A S++SAS + ID NI AT+ A+ AVE L V+P A IDG P Sbjct: 71 ERLFDEIVAHALAYSVASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM 130 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ A++ GD++ SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H Sbjct: 131 LA-IRSEAIVGGDALVPSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAA 189 Query: 188 IKEKGPSCIHRLTFRPLR 205 ++E GP HR +F P+R Sbjct: 190 LREHGPCEHHRRSFAPVR 207 >gi|313678810|ref|YP_004056550.1| ribonuclease HIII [Mycoplasma bovis PG45] gi|312950535|gb|ADR25130.1| ribonuclease HIII [Mycoplasma bovis PG45] Length = 207 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 68/199 (34%), Positives = 103/199 (51%), Gaps = 2/199 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E K+ +AG+DE GRG AGP+VVA++I+ N + INDSKK+S K+RE L Sbjct: 2 LDYEFKNF-KDYKLIAGVDEAGRGCCAGPLVVASVIMPKNYVNERINDSKKLSPKQREIL 60 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +++I + I K + + +I + L Sbjct: 61 FDEIIDNCIDYYILTLPASYVDEYNPKQSSKNGMKICIDSLNAKPEVVITDFEKIDHLDI 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGDSIS ++A ASI+AKVTRDR M KY +Y F+ H GY T KH I + Sbjct: 121 KQINLVKGDSISFNVACASILAKVTRDRYMIKIADKYKEYEFEKHKGYCTKKHTDAIIKY 180 Query: 192 GPSCIHRLTFRPL-RNLSV 209 G + HRLT++ + + +S+ Sbjct: 181 GVTAEHRLTYKNVIKAMSI 199 >gi|330830741|ref|YP_004393693.1| ribonuclease HII [Aeromonas veronii B565] gi|328805877|gb|AEB51076.1| Ribonuclease HII [Aeromonas veronii B565] Length = 196 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 89/184 (48%), Positives = 118/184 (64%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP N G+NDSKK+S KKR L+++I A + Sbjct: 9 KLVAGVDEVGRGPLVGDVVTAAVILDPANPIAGLNDSKKLSEKKRLALFDEIKEKALAWA 68 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I AS ID+ NI AT+ A+ AV L+V P IDG P +A AV+KGDS+ Sbjct: 69 IGRASPAEIDELNILHATMLAMQRAVAGLKVTPELVFIDGNRCPALPM-EARAVVKGDSL 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRD M ++P+YGF H GYPTA+H ++ E+GP +R +F+ Sbjct: 128 VAAISAASILAKVTRDGEMTELDSRHPEYGFARHKGYPTAEHLAILAERGPLPEYRKSFK 187 Query: 203 PLRN 206 P+R Sbjct: 188 PVRR 191 >gi|308048683|ref|YP_003912249.1| RNase HII [Ferrimonas balearica DSM 9799] gi|307630873|gb|ADN75175.1| RNase HII [Ferrimonas balearica DSM 9799] Length = 191 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 113/184 (61%), Gaps = 1/184 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 +AG+DEVGRG L G VV AA+ILDPNN G+ DSKK+S K+RE LY +I A Sbjct: 3 RLIAGVDEVGRGPLVGDVVTAAVILDPNNPIEGLRDSKKLSEKRREALYHEIREKALAWC 62 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ AS ID+ NI AT+ A+ AV L V P +DG P+ A A++KGD Sbjct: 63 VARASVAEIDQLNILHATMLAMQRAVAGLPVQPDFVRVDGNRCPDFGGIGAEALVKGDDK 122 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRD M+ +++P YGF +H GYPTA H + E G HR +F+ Sbjct: 123 EPAISAASILAKVTRDEEMKALDQRHPQYGFANHKGYPTAAHLAALAEHGALPEHRTSFK 182 Query: 203 PLRN 206 P+R Sbjct: 183 PVRR 186 >gi|17231824|ref|NP_488372.1| ribonuclease HII [Nostoc sp. PCC 7120] gi|39932442|sp|Q8YP68|RNH2_ANASP RecName: Full=Ribonuclease HII; Short=RNase HII gi|17133468|dbj|BAB76031.1| ribonuclease HII [Nostoc sp. PCC 7120] Length = 225 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 82/192 (42%), Positives = 116/192 (60%), Gaps = 5/192 (2%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEK 74 VAG+DEVGRGAL GPVV A++IL P+ + I DSKK+SH +R +L ++ Sbjct: 30 WSNISGLVAGVDEVGRGALFGPVVAASVILPASAFPHLMTAEIKDSKKLSHSRRVQLAQQ 89 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I++ A I A+ ID+ NI +ATL A+ +V+ L++ P LIDG +DL Sbjct: 90 ISTLAIDWRIGYATTAEIDRINILQATLLAMKRSVKKLKLQPILCLIDGNQPVQDLLMLQ 149 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++KGD SL+IAAASI+AKV RD L++ KYP Y S+ GY + KH + + G Sbjct: 150 QTIVKGDERSLNIAAASIMAKVWRDDLIQRLATKYPMYDLKSNKGYGSKKHLLALAQHGA 209 Query: 194 SCIHRLTFRPLR 205 S +HR +FRP + Sbjct: 210 SPLHRQSFRPCQ 221 >gi|269121650|ref|YP_003309827.1| ribonuclease H [Sebaldella termitidis ATCC 33386] gi|268615528|gb|ACZ09896.1| Ribonuclease H [Sebaldella termitidis ATCC 33386] Length = 197 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 82/196 (41%), Positives = 113/196 (57%), Gaps = 5/196 (2%) Query: 15 EAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELY 72 E + + +AG+DE GRG LAGPVV AA+I++ INDSKK++ KKRE+LY Sbjct: 3 ELRLFDNEYNCIIAGVDEAGRGPLAGPVVAAAVIIEDYFEELEEINDSKKLTEKKREKLY 62 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I + I +A + IDK NI AT A+ A+E + L+DG + + Sbjct: 63 AVIREKRKVGIGTADEKEIDKINILNATFLAMRRALEQID-NYDIVLVDGNHKIREYSGR 121 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD SLSIAAASI+AKV RD +M+ ++YPDY F+ H GY T H++++ G Sbjct: 122 QEEIIKGDGRSLSIAAASIVAKVYRDNIMKDFARQYPDYRFEKHKGYGTKLHRELLHAHG 181 Query: 193 PSCIHRLTFRPLRNLS 208 IHR TF LR + Sbjct: 182 ACKIHRKTF--LRKIL 195 >gi|172038236|ref|YP_001804737.1| ribonuclease HII [Cyanothece sp. ATCC 51142] gi|171699690|gb|ACB52671.1| ribonuclease HII [Cyanothece sp. ATCC 51142] Length = 202 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 78/191 (40%), Positives = 109/191 (57%), Gaps = 5/191 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELY 72 + + +AG+DEVGRG L GPVV AA++ + G+ DSK++S K+RE L Sbjct: 10 QLFSHSQILMAGVDEVGRGCLFGPVVAAAVVFNFTTIAQLQDIGVKDSKQLSVKRRESLV 69 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I + AI IS AS Q ID+ NI A+L A+ ++ L V P LIDG DL Sbjct: 70 TEIKNRAISYQISYASSQEIDRLNILNASLLAMKRSITKLSVTPELCLIDGNQKIPDLTI 129 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +I GD S IAAASI+AKV RD+L+ KYP Y +++ GY T KH+ +++ Sbjct: 130 AQETIIGGDRTSPIIAAASILAKVWRDQLIVRLAAKYPHYDLENNKGYGTKKHRMGLQQY 189 Query: 192 GPSCIHRLTFR 202 GP HR +F+ Sbjct: 190 GPCFHHRRSFK 200 >gi|94986666|ref|YP_594599.1| ribonuclease HII [Lawsonia intracellularis PHE/MN1-00] gi|189043608|sp|Q1MRU8|RNH2_LAWIP RecName: Full=Ribonuclease HII; Short=RNase HII gi|94730915|emb|CAJ54278.1| ribonuclease HII [Lawsonia intracellularis PHE/MN1-00] Length = 224 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 82/211 (38%), Positives = 116/211 (54%), Gaps = 16/211 (7%) Query: 5 SIPERPHFELEAMVREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 S+P PH + N+ + AG+DEVGRG LAGPVV A+IL G+ DSK I Sbjct: 16 SLPITPH-----ELVYDNLSLLTAGLDEVGRGCLAGPVVAGAVILPDTISIDGLADSKTI 70 Query: 64 SHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S +R L +KI +AI I + ID+ NI +A+L A+ HA L+ P LIDG Sbjct: 71 SSNRRYILAKKIYETAISWGIGVVWPKEIDEINILQASLKAMAHAATVLKTFPELLLIDG 130 Query: 123 RS---------IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + ++IKGD+ +I+AASIIAK RD LM K+YP Y F Sbjct: 131 NKAIPQKFFIQFGWNFLPIQHSIIKGDASIPAISAASIIAKTFRDTLMSKLDKRYPQYNF 190 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 + GY + H++++++ GPS IHR+TF+ + Sbjct: 191 SKNKGYGSKTHREILQKIGPSPIHRMTFKGV 221 >gi|300771702|ref|ZP_07081577.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33861] gi|300761691|gb|EFK58512.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33861] Length = 198 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 76/193 (39%), Positives = 101/193 (52%), Gaps = 9/193 (4%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F++E AG DE GRG LAGPV AA+I + +NDSKK+S KKR Sbjct: 5 TFQIER--------IEAGCDEAGRGCLAGPVFAAAVIFPKDYHHDLLNDSKKLSEKKRMA 56 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I A +++S S + IDK NIH A+ A++ A++ LQV ++DG Sbjct: 57 LRPIIEQEALAFAVASVSAEEIDKINIHNASYLAMHRALDQLQVKAEYIIVDGNRFIPYP 116 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD LSIAAASI+AK RD M +P Y + + GYPT KH+ + Sbjct: 117 EVSHTCIIKGDGKYLSIAAASILAKTYRDEYMESIACDFPAYDWLQNKGYPTVKHRNAVL 176 Query: 190 EKGPSCIHRLTFR 202 G + HR TFR Sbjct: 177 AYGLTPHHRKTFR 189 >gi|90425833|ref|YP_534203.1| ribonuclease HII [Rhodopseudomonas palustris BisB18] gi|122475150|sp|Q20YA2|RNH2_RHOPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|90107847|gb|ABD89884.1| RNase HII [Rhodopseudomonas palustris BisB18] Length = 266 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 125/196 (63%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P F E + ++ +WPVAG DE GRG LAGPVV AA++LDP IP G++DSK+++ KR Sbjct: 43 PPSFRRERALLKRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPKRIPKGLDDSKRLTADKR 102 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E+L+E+I ++A +++ AS ID+ NI +A+L A+ AV L +PR +DGR Sbjct: 103 EQLFEQICATAAFAVAYASPARIDRDNILRASLWALAKAVHALPEMPRHVFVDGRDKIA- 161 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 C AVI GD + LSIAAASIIAKV+RDRLM + P YGF++H GY +H + Sbjct: 162 TSCDCDAVIGGDGLVLSIAAASIIAKVSRDRLMCRLAEDCPGYGFENHKGYGVPEHLAAL 221 Query: 189 KEKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 222 DRLGPSKHHRRLFAPV 237 >gi|308190329|ref|YP_003923260.1| ribonuclease H [Mycoplasma fermentans JER] gi|319777726|ref|YP_004137377.1| ribonuclease [Mycoplasma fermentans M64] gi|307625071|gb|ADN69376.1| ribonuclease H [Mycoplasma fermentans JER] gi|318038801|gb|ADV35000.1| Ribonuclease [Mycoplasma fermentans M64] Length = 198 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 1/195 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + G+DE GRG AGP+VV +I+ N I DSK++S K+REE Sbjct: 2 LNYEKENYPD-TKLIVGLDEAGRGCCAGPLVVGCVIMPQNFNHPLIKDSKQLSQKQREEA 60 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I +AI ++++ + K N +I D+ Sbjct: 61 LEIILENAIETVTTIINAQEVDQLNPKQASRIGMQRCINKLNTKPELVITDFEKINDINI 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD +S+++AAASI+AKVTRD +M KK+P Y F + GY T +H+ + + Sbjct: 121 PQINLVKGDQLSINVAAASILAKVTRDLIMVGIDKKFPMYNFKKNKGYCTKEHEAAMSQY 180 Query: 192 GPSCIHRLTFRPLRN 206 G HR +++ ++ Sbjct: 181 GICEFHRKSYKNVKK 195 >gi|293363996|ref|ZP_06610732.1| ribonuclease HII [Mycoplasma alligatoris A21JP2] gi|292552486|gb|EFF41260.1| ribonuclease HII [Mycoplasma alligatoris A21JP2] Length = 199 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 1/193 (0%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E+++ +K + G+DEVGR +LAGP+VVA ++ N I DSK+++ +R+ Y+ Sbjct: 4 YESVLLQK-YEKILGLDEVGRDSLAGPIVVACVMFPKNYHNPLIKDSKELTKDQRDIAYK 62 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 +I AI + + K + + + + + + + Q+ Sbjct: 63 EIIKDAITYKYIFLDKDFVDLHNPKKSSIIGMEKLIDSYELDQIDYVITDYEKVNTKFQS 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A+ GD S++IAAASI+AKV RD M +YP Y FD + GY T H + +K+ GP Sbjct: 123 RAIKFGDKYSITIAAASIVAKVIRDEYMDKMSLEYPIYAFDKNKGYGTKVHLEALKKYGP 182 Query: 194 SCIHRLTFRPLRN 206 S IHR++++P+++ Sbjct: 183 SPIHRISYKPVKD 195 >gi|238810213|dbj|BAH70003.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 217 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 1/195 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + G+DE GRG AGP+VV +I+ N I DSK++S K+REE Sbjct: 21 LNYEKENYPD-TKLIVGLDEAGRGCCAGPLVVGCVIMPQNFNHPLIKDSKQLSQKQREEA 79 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E I +AI ++++ + K N +I D+ Sbjct: 80 LEIILENAIETVTTIINAQEVDQLNPKQASRIGMQRCINKLNTKPELVITDFEKINDINI 139 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD +S+++AAASI+AKVTRD +M KK+P Y F + GY T +H+ + + Sbjct: 140 PQINLVKGDQLSINVAAASILAKVTRDLIMVGIDKKFPMYNFKKNKGYCTKEHEAAMSQY 199 Query: 192 GPSCIHRLTFRPLRN 206 G HR +++ ++ Sbjct: 200 GICEFHRKSYKNVKK 214 >gi|57238907|ref|YP_180043.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden] gi|81637940|sp|Q5HC01|RNH2_EHRRW RecName: Full=Ribonuclease HII; Short=RNase HII gi|57160986|emb|CAH57892.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden] Length = 212 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 82/205 (40%), Positives = 113/205 (55%), Gaps = 6/205 (2%) Query: 10 PHFELEAM---VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKIS 64 P F +E ++ + G+DEVG G+LAGPVV AA+ N INDSKK++ Sbjct: 2 PDFSIENEILKLKNNKECIIVGVDEVGYGSLAGPVVSAAVFFPNYNNETTQDINDSKKLT 61 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL-IDGR 123 K R+++Y KI + SI A ID++NI AT A+ A+ L I Sbjct: 62 PKTRQKIYNKIITRVKWSIGFAHIFEIDEYNILNATHIAMKRALTGLNAHIDIDYVIIDG 121 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + ++P A A+I GD+IS SIAAASIIAKVTRDRLM H +YP Y ++ + GY T Sbjct: 122 NKIPNIPWNAQAIIGGDTISTSIAAASIIAKVTRDRLMETLHIQYPQYNWNKNKGYGTKD 181 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H + + G + HR TF P+ +S Sbjct: 182 HITSLYKYGKTIHHRNTFTPISKIS 206 >gi|42523584|ref|NP_968964.1| ribonuclease HII (RNase HII) [Bdellovibrio bacteriovorus HD100] gi|81617170|sp|Q6MLA0|RNH2_BDEBA RecName: Full=Ribonuclease HII; Short=RNase HII gi|39575790|emb|CAE79957.1| ribonuclease HII (RNase HII) [Bdellovibrio bacteriovorus HD100] Length = 221 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 109/182 (59%), Gaps = 1/182 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 P+ G+DEVGRG LAGPV AA+I + + + DSK +S K+REEL + I I+ I Sbjct: 37 PIIGVDEVGRGCLAGPVYAAAVIFKSDALNDLVTDSKLLSEKRREELADLILKEHIVGIG 96 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED-LPCQAFAVIKGDSIS 143 SAS + ID+ NI A+L A+ AVE L V L+DG + + ++KGD Sbjct: 97 SASVEEIDEINILNASLLAMKRAVEKLGVKSGHVLVDGNKKIPNLKGFEQSTIVKGDLRV 156 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKVTRDRLM+ KYP YGF+ H GY T H+Q I + GP HR +F Sbjct: 157 APISAASIVAKVTRDRLMKDLGVKYPHYGFEIHKGYSTPVHKQSIVDHGPCIAHRRSFAG 216 Query: 204 LR 205 ++ Sbjct: 217 VK 218 >gi|303234893|ref|ZP_07321518.1| ribonuclease HII [Finegoldia magna BVS033A4] gi|302494011|gb|EFL53792.1| ribonuclease HII [Finegoldia magna BVS033A4] Length = 207 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 77/201 (38%), Positives = 106/201 (52%), Gaps = 15/201 (7%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREEL 71 E E + + GIDEVGRG LAGPVV AII+ N I G+ DSKK+S KKR + Sbjct: 8 EFEEEL-------ICGIDEVGRGPLAGPVVTCAIIMPKNCEIIDGVTDSKKLSEKKRIKF 60 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----SIP 126 + I + A S++ ID+ NI +AT ++ AVE+L+ + + Sbjct: 61 KDMILNQALAYSVNFVDQGVIDEINIKQATRLSMKRAVESLKTKDNKFIKPDLIVIDAEE 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D + + +KGD I+ ASI+AKV RD M+ YP YGF+ H GY T H++ Sbjct: 121 IDTDIKQMSFVKGDEKLYPISCASIVAKVIRDEYMKDMAVIYPQYGFEKHKGYGTKLHRE 180 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 +I E G +HR TF LR L Sbjct: 181 MILEHGECPLHRKTF--LRKL 199 >gi|311694071|gb|ADP96944.1| ribonuclease HII [marine bacterium HP15] Length = 228 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 83/204 (40%), Positives = 115/204 (56%), Gaps = 8/204 (3%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 P P E +AG+DEVGRG L G VV AA+ILDP+ G+ DSKK Sbjct: 1 MPKSPLPP---FECRYTGS---LLAGVDEVGRGPLIGAVVTAAVILDPDRPIAGLADSKK 54 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ K+R LY++I A SI ID+ NI++AT+ A+ AV L V+P L+D Sbjct: 55 LTEKRRNALYDQILEHAKAWSIGRCESHEIDRLNIYQATMLAMERAVSGLAVVPEYVLVD 114 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G P+ + V+KGDS +I+AASIIAKVTRDR M ++P +G H GYPT Sbjct: 115 GNRCPK-WRWPSEPVVKGDSRVAAISAASIIAKVTRDREMEALEARFPGFGLAQHKGYPT 173 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLR 205 H + ++ G + HR +FRP++ Sbjct: 174 PVHLEALRRLGATIEHRRSFRPVQ 197 >gi|145300047|ref|YP_001142888.1| ribonuclease HII [Aeromonas salmonicida subsp. salmonicida A449] gi|166225165|sp|A4SQG8|RNH2_AERS4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|142852819|gb|ABO91140.1| ribonuclease HII [Aeromonas salmonicida subsp. salmonicida A449] Length = 196 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG L G VV AA+ILDP N G+ DSKK+S KKR L+++I A + Sbjct: 9 KLVAGVDEVGRGPLVGDVVTAAVILDPANPITGLADSKKLSEKKRLALFDEIKQKALAWA 68 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I AS + ID+ NI AT+ A+ AV L + P IDG P +A AV+KGDS+ Sbjct: 69 IGRASPEEIDELNILHATMLAMQRAVAGLSITPELVFIDGNRCPSLPM-EARAVVKGDSL 127 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I+AASI+AKVTRD M ++P+YGF H GYPT +H ++ E+GP +R +F+ Sbjct: 128 VAAISAASILAKVTRDAEMTELDSRHPEYGFARHKGYPTPEHLAILAERGPLPAYRKSFK 187 Query: 203 PLR 205 P+R Sbjct: 188 PVR 190 >gi|157964267|ref|YP_001499091.1| ribonuclease HII [Rickettsia massiliae MTU5] gi|189043648|sp|A8F0V8|RNH2_RICM5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157844043|gb|ABV84544.1| Ribonuclease HII [Rickettsia massiliae MTU5] Length = 194 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 89/191 (46%), Positives = 114/191 (59%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S K RE L Sbjct: 7 LYFEKKYHN---CIVAGIDEAGRGPLAGPVVASAVIIDNANIITGIKDSKKLSKKTRELL 63 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + + + SH ID NI +AT A AV NL + P L+DG +D Sbjct: 64 YEQITSNYVWATAIISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE-- 121 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++I GD++SLSIAAASI+AKVTRDRLM + P Y + + GY T +H + I Sbjct: 122 RFVSIINGDNLSLSIAAASIVAKVTRDRLMLDLSAELPQYLWHKNSGYGTKEHIEAINIH 181 Query: 192 GPSCIHRLTFR 202 G S HR +FR Sbjct: 182 GLSPYHRRSFR 192 >gi|15895039|ref|NP_348388.1| ribonuclease HII [Clostridium acetobutylicum ATCC 824] gi|39932446|sp|Q97I90|RNH2_CLOAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|15024732|gb|AAK79728.1|AE007685_4 Ribonuclease HII [Clostridium acetobutylicum ATCC 824] gi|325509176|gb|ADZ20812.1| ribonuclease HII [Clostridium acetobutylicum EA 2018] Length = 254 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 83/202 (41%), Positives = 118/202 (58%), Gaps = 12/202 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN-----NIPFGINDSKKISHK 66 +E + +AG+DEVGRG LAGP+V AA+IL+ N ++ GINDSKK+S K Sbjct: 58 YEFDKQF---GNIVIAGVDEVGRGPLAGPIVGAAVILELNVEKDLDLILGINDSKKLSSK 114 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR+EL E I A I+S + IDK I + A+ L+ +P + DG ++ Sbjct: 115 KRQELSEIIKEKALAWEIASLDNNEIDKKGISWCNNEIFKIAISKLKKVPELVISDGYAV 174 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + + ++KGD+ S SIA ASIIAKV RD LM K Y +YGF+S+VGY + H Sbjct: 175 K-GIGIKNHYIVKGDAQSASIACASIIAKVYRDNLMGEYAKSYSEYGFESNVGYGSKDHI 233 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 IK+ G + IHR++F L+N+ Sbjct: 234 DAIKKFGTTPIHRMSF--LKNI 253 >gi|257094431|ref|YP_003168072.1| ribonuclease HII [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046955|gb|ACV36143.1| Ribonuclease H [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 198 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 84/189 (44%), Positives = 111/189 (58%), Gaps = 4/189 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 V GIDE GRG LAGPVV AA+ILDP+ G+NDSKK+S ++RE L E I + A+ Sbjct: 8 GLVCGIDEAGRGPLAGPVVAAAVILDPSRPIAGLNDSKKLSARRREVLAEAIRARALAWA 67 Query: 84 SSAS-HQYIDKHNIHKATLDAIYHAVEN---LQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +A+ + ID+ NI +A+L A+ AV + LPC A A++ G Sbjct: 68 VAAASVEEIDRINILQASLLAMQRAVAALAGGHGAWPVHALVDGQHCPQLPCSAEAIVGG 127 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D SIAAASI+AK +RD MR H YP YGFD H+GYPTA H + ++E G S HR Sbjct: 128 DGRIASIAAASILAKTSRDAGMRELHATYPQYGFDRHMGYPTAFHLRALEEHGVSPHHRR 187 Query: 200 TFRPLRNLS 208 ++ P+ L Sbjct: 188 SYAPVARLL 196 >gi|329893784|ref|ZP_08269872.1| Ribonuclease HII [gamma proteobacterium IMCC3088] gi|328923507|gb|EGG30821.1| Ribonuclease HII [gamma proteobacterium IMCC3088] Length = 193 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 81/191 (42%), Positives = 109/191 (57%), Gaps = 1/191 (0%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 M+ + VAG+DEVGRG L G VV AA+ILD NN G+ DSKK + K+ L E I Sbjct: 1 MLLAYEIGLVAGVDEVGRGPLVGNVVTAAVILDVNNPVEGLKDSKKCTEKQLHALNEDIQ 60 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 + A + A+ ID+ NI AT+ A+ AV L + P L+DG +P L A Sbjct: 61 AKALCFAFGQATPAEIDELNILHATMLAMTRAVNGLSITPEHVLVDGNRVPRQLGVPATP 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 IKGD IAAASI+AKV RD M +++P+YGF H GYPT +H+Q + + G Sbjct: 121 CIKGDGTYACIAAASILAKVARDAQMVDLDRRHPEYGFARHKGYPTLEHRQALIDHGVLI 180 Query: 196 IHRLTFRPLRN 206 HR +F P++ Sbjct: 181 EHRKSFGPVQR 191 >gi|261366997|ref|ZP_05979880.1| ribonuclease HII [Subdoligranulum variabile DSM 15176] gi|282571115|gb|EFB76650.1| ribonuclease HII [Subdoligranulum variabile DSM 15176] Length = 201 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 90/191 (47%), Positives = 116/191 (60%), Gaps = 4/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ E R V G+DE GRG L GPV AA+ILDP++ GINDSKK+S K+RE L Sbjct: 4 FDAEQCAR---FGVVCGVDEAGRGPLCGPVCCAAVILDPDDPIEGINDSKKLSEKRREAL 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +E+IT A+ I S Q ID+ NI AT+D + AV L P LIDG P DL Sbjct: 61 FEEITQRAVAYQIVFISPQEIDERNILWATMDGMSQAVAGLNPQPEYVLIDGNRCPPDLS 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A AV+KGD+ S SIAAASI+AKV+RDR M+ +++P Y H GYPT H ++I + Sbjct: 121 HPAKAVVKGDATSASIAAASILAKVSRDRYMKELDQQFPQYQLAKHKGYPTKLHYELIAQ 180 Query: 191 KGPSCIHRLTF 201 G +R +F Sbjct: 181 YGIQPFYRRSF 191 >gi|53723725|ref|YP_103181.1| ribonuclease HII [Burkholderia mallei ATCC 23344] gi|67641696|ref|ZP_00440465.1| ribonuclease HII [Burkholderia mallei GB8 horse 4] gi|121600420|ref|YP_993357.1| ribonuclease HII [Burkholderia mallei SAVP1] gi|124383370|ref|YP_001029206.1| ribonuclease HII [Burkholderia mallei NCTC 10229] gi|126448047|ref|YP_001080864.1| ribonuclease HII [Burkholderia mallei NCTC 10247] gi|126454836|ref|YP_001066737.1| ribonuclease HII [Burkholderia pseudomallei 1106a] gi|167816367|ref|ZP_02448047.1| ribonuclease HII [Burkholderia pseudomallei 91] gi|167846278|ref|ZP_02471786.1| ribonuclease HII [Burkholderia pseudomallei B7210] gi|167894859|ref|ZP_02482261.1| ribonuclease HII [Burkholderia pseudomallei 7894] gi|167919499|ref|ZP_02506590.1| ribonuclease HII [Burkholderia pseudomallei BCC215] gi|217421612|ref|ZP_03453116.1| ribonuclease HII [Burkholderia pseudomallei 576] gi|242316504|ref|ZP_04815520.1| ribonuclease HII [Burkholderia pseudomallei 1106b] gi|254177550|ref|ZP_04884205.1| ribonuclease HII [Burkholderia mallei ATCC 10399] gi|254200133|ref|ZP_04906499.1| ribonuclease HII [Burkholderia mallei FMH] gi|254206471|ref|ZP_04912823.1| ribonuclease HII [Burkholderia mallei JHU] gi|254358121|ref|ZP_04974394.1| ribonuclease HII [Burkholderia mallei 2002721280] gi|81604828|sp|Q62JD8|RNH2_BURMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225173|sp|A3MKS8|RNH2_BURM7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225174|sp|A2SB87|RNH2_BURM9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225175|sp|A1V554|RNH2_BURMS RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225176|sp|A3NWL6|RNH2_BURP0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|52427148|gb|AAU47741.1| ribonuclease HII [Burkholderia mallei ATCC 23344] gi|121229230|gb|ABM51748.1| ribonuclease HII [Burkholderia mallei SAVP1] gi|124291390|gb|ABN00659.1| ribonuclease HII [Burkholderia mallei NCTC 10229] gi|126228478|gb|ABN92018.1| ribonuclease HII [Burkholderia pseudomallei 1106a] gi|126240917|gb|ABO04010.1| ribonuclease HII [Burkholderia mallei NCTC 10247] gi|147749729|gb|EDK56803.1| ribonuclease HII [Burkholderia mallei FMH] gi|147753914|gb|EDK60979.1| ribonuclease HII [Burkholderia mallei JHU] gi|148027248|gb|EDK85269.1| ribonuclease HII [Burkholderia mallei 2002721280] gi|160698589|gb|EDP88559.1| ribonuclease HII [Burkholderia mallei ATCC 10399] gi|217395354|gb|EEC35372.1| ribonuclease HII [Burkholderia pseudomallei 576] gi|238522657|gb|EEP86100.1| ribonuclease HII [Burkholderia mallei GB8 horse 4] gi|242139743|gb|EES26145.1| ribonuclease HII [Burkholderia pseudomallei 1106b] Length = 214 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 126/198 (63%), Gaps = 7/198 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P + + V G+DE GRG LAGPVV AA++LDP G++DSK +S KKR Sbjct: 16 QPALDFD-----APGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKR 70 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L+++I + A S++SAS + ID NI AT+ A+ AVE L V+P A IDG P Sbjct: 71 ERLFDEIVAYALAYSVASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM 130 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ A++ GD++ SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H Sbjct: 131 LA-IRSEAIVGGDALVPSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAA 189 Query: 188 IKEKGPSCIHRLTFRPLR 205 ++E GP HR +F P+R Sbjct: 190 LREHGPCEHHRRSFAPVR 207 >gi|160903112|ref|YP_001568693.1| ribonuclease H [Petrotoga mobilis SJ95] gi|160360756|gb|ABX32370.1| Ribonuclease H [Petrotoga mobilis SJ95] Length = 208 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 74/200 (37%), Positives = 104/200 (52%), Gaps = 10/200 (5%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKRE 69 +E + K + GIDE GRG LAGPV V A++++ + DSK +S K+RE Sbjct: 5 IEITLLNK-YKKIIGIDEAGRGPLAGPVFVGAVVIESKKEGELLAKIGKDSKSLSPKQRE 63 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYH---AVENLQVIPRSALIDGRSIP 126 Y +IT + + ++ Q ID+ NI KAT A+ + +IDG+ Sbjct: 64 RRYFQITRNFKYYSNFSTSQLIDEINIFKATELAMIKLLEKIVEENANDYYVIIDGKFFK 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D ++KGD S I AASI+AK RD M H+ YP+YGF +H GYPT KH + Sbjct: 124 LDYNYD--CIVKGDQTSPLIGAASIVAKYERDIYMNQLHELYPNYGFITHKGYPTRKHIE 181 Query: 187 VIKEKGPSCIHRLTFRPLRN 206 IK+ G HR TF P++ Sbjct: 182 SIKKYGIISEHRKTFNPIKR 201 >gi|192289636|ref|YP_001990241.1| ribonuclease HII [Rhodopseudomonas palustris TIE-1] gi|238692592|sp|B3QHK8|RNH2_RHOPT RecName: Full=Ribonuclease HII; Short=RNase HII gi|192283385|gb|ACE99765.1| Ribonuclease H [Rhodopseudomonas palustris TIE-1] Length = 281 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 89/196 (45%), Positives = 125/196 (63%), Gaps = 1/196 (0%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P F E + ++ +WP+AG DE GRG LAGPVV AA++LDP +P G++DSK++S +KR Sbjct: 58 PPSFRRERALIKRGIWPIAGCDEAGRGPLAGPVVAAAVVLDPKRVPKGLDDSKRLSAEKR 117 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L+E+I ++A +S+ AS + I++ NI +A+L A+ AV L +PR +DGR Sbjct: 118 EALFEEICATAQVSVVYASPERINRDNILRASLWALTRAVHALPDLPRHVFVDGRDRLA- 176 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 C AVI GD + SIAAASIIAKV+RDRLM ++ P YGF+ H GY +H + Sbjct: 177 TKCDCEAVIGGDGLIASIAAASIIAKVSRDRLMCKLAEQCPGYGFEQHKGYGVPEHLDAL 236 Query: 189 KEKGPSCIHRLTFRPL 204 GP+ HR F P+ Sbjct: 237 ARLGPTVHHRRFFAPV 252 >gi|227535995|ref|ZP_03966044.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33300] gi|227244238|gb|EEI94253.1| ribonuclease H [Sphingobacterium spiritivorum ATCC 33300] Length = 198 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 75/193 (38%), Positives = 101/193 (52%), Gaps = 9/193 (4%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F++E AG DE GRG LAGPV AA+I + +NDSKK+S KKR Sbjct: 5 TFQIER--------IEAGCDEAGRGCLAGPVFAAAVIFPKDYHHDLLNDSKKLSEKKRMA 56 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I A +++S S + IDK NIH A+ A++ A++ L+V ++DG Sbjct: 57 LRPIIEQEALAFAVASVSAEEIDKINIHNASYLAMHRALDQLKVKAEYIIVDGNRFIPYP 116 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD LSIAAASI+AK RD M +P Y + + GYPT KH+ + Sbjct: 117 EVSHTCIIKGDGKYLSIAAASILAKTYRDEYMESIACDFPAYDWLQNKGYPTVKHRNAVL 176 Query: 190 EKGPSCIHRLTFR 202 G + HR TFR Sbjct: 177 AYGLTPHHRKTFR 189 >gi|293605073|ref|ZP_06687465.1| ribonuclease HII [Achromobacter piechaudii ATCC 43553] gi|292816476|gb|EFF75565.1| ribonuclease HII [Achromobacter piechaudii ATCC 43553] Length = 202 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 82/204 (40%), Positives = 111/204 (54%), Gaps = 5/204 (2%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E+P + AG+DE GRG LAG V AA+IL+P G+ DSK + Sbjct: 1 MEQPDLF---AAPAQPALVTAGVDEAGRGPLAGAVYAAAVILNPARPIDGLADSKVLKAA 57 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 RE L +I A I+SAS Q ID NI +AT+ A+ AV+ L V + AL+DG Sbjct: 58 TREALALEIQEHALAWCIASASVQEIDTLNILRATMLAMQRAVQGLSVPAQLALVDGN-Q 116 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 L C VIKGD++ +I+AASI+AK RD + H YP Y F+ H GY TA H Sbjct: 117 APKLACTVQTVIKGDALVPAISAASILAKTARDADLVRLHGLYPQYAFNQHKGYGTALHL 176 Query: 186 QVIKEKGPSCIHRLTFRPLRNLSV 209 Q+++E GP HR +F P++ + Sbjct: 177 QMLREHGPCAEHRRSFAPIKAFGL 200 >gi|294781869|ref|ZP_06747201.1| ribonuclease HII [Fusobacterium sp. 1_1_41FAA] gi|294481680|gb|EFG29449.1| ribonuclease HII [Fusobacterium sp. 1_1_41FAA] Length = 217 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 120/198 (60%), Gaps = 9/198 (4%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I Sbjct: 7 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIIL 66 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP-----RSALIDGRSIPEDLPC 131 ++ +++ AS + IDK NI A A+ A+++L+ L+DG ++ Sbjct: 67 NNFNVAVGIASVEEIDKLNILNADFLAMRRALKDLEKFYETKKDYIVLVDGNLKIKEYEG 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + F ++KGD+ SLSIAAASIIAKVTRDR+M+ KYPDY F+ + GY T KH + IK K Sbjct: 127 KQFPIVKGDAKSLSIAAASIIAKVTRDRIMKDLGLKYPDYDFEKNKGYGTKKHVEAIKTK 186 Query: 192 GPSC-IHRLTFRPLRNLS 208 G IHR F LR + Sbjct: 187 GVLKNIHRKVF--LRKIL 202 >gi|298490081|ref|YP_003720258.1| ribonuclease H ['Nostoc azollae' 0708] gi|298231999|gb|ADI63135.1| Ribonuclease H ['Nostoc azollae' 0708] Length = 221 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 81/209 (38%), Positives = 116/209 (55%), Gaps = 5/209 (2%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GI 57 ++ P E VAG+DEVGRGAL GPVV AA++L + +P I Sbjct: 11 LLSTAPLPESSWWELSTCANIHGLVAGVDEVGRGALFGPVVAAAVMLSADALPKLMAAKI 70 Query: 58 NDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSKK+S +R +L ++I I A+ ID+ NI +ATL A+ AV L+V P Sbjct: 71 KDSKKLSASRRTQLAQQINGLVLDWKIGYATTAEIDQFNILQATLLAMKRAVLKLKVPPA 130 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 L+DG + +DL +IKGD SL+IA+ASI+AKV RD L+ KYP Y + + Sbjct: 131 LCLVDGNQLVKDLLIPQETMIKGDERSLNIASASIMAKVWRDDLLLRLASKYPMYELERN 190 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 GY + +H +++ G S +HR +FRP + Sbjct: 191 KGYGSQRHLLALRKYGASPLHRRSFRPCQ 219 >gi|167000564|ref|ZP_02266375.1| ribonuclease HII [Burkholderia mallei PRL-20] gi|243063495|gb|EES45681.1| ribonuclease HII [Burkholderia mallei PRL-20] Length = 214 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 126/198 (63%), Gaps = 7/198 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P + + V G+DE GRG LAGPVV AA++LDP G++DSK +S KKR Sbjct: 16 QPALDFD-----APGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKR 70 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L+++I + A S++SAS + ID NI AT+ A+ AVE L V+P A IDG P Sbjct: 71 ERLFDEIAAYALAYSVASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM 130 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ A++ GD++ SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H Sbjct: 131 LA-IRSEAIVGGDALVPSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAA 189 Query: 188 IKEKGPSCIHRLTFRPLR 205 ++E GP HR +F P+R Sbjct: 190 LREHGPCEHHRRSFAPVR 207 >gi|310779317|ref|YP_003967650.1| Ribonuclease H [Ilyobacter polytropus DSM 2926] gi|309748640|gb|ADO83302.1| Ribonuclease H [Ilyobacter polytropus DSM 2926] Length = 203 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 112/194 (57%), Gaps = 11/194 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREE 70 F++E + GIDE GRG LAGPVV AA+ + F INDSKK+S KKRE Sbjct: 7 FDME-------YGDIIGIDEAGRGPLAGPVVAAAVKIKKYVKEFDMINDSKKLSEKKREL 59 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL---QVIPRSALIDGRSIPE 127 L++ I + + + + + ID +NI AT + A+E++ + + L+DG Sbjct: 60 LFDVIIENCHVGVGVVNEKDIDNYNILNATFMGMIKAIEDISEEGISFENVLVDGNHKIR 119 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + + +IKGD SL+IAAASIIAKVTRDR+M +KYP+YGF H GY T +H++ Sbjct: 120 EYNNRQTPIIKGDGKSLAIAAASIIAKVTRDRIMVKYDEKYPEYGFAKHKGYGTKQHREA 179 Query: 188 IKEKGPSCIHRLTF 201 I + G HR TF Sbjct: 180 ILKNGACQCHRKTF 193 >gi|313681315|ref|YP_004059053.1| RNAase hii [Sulfuricurvum kujiense DSM 16994] gi|313154175|gb|ADR32853.1| RNase HII [Sulfuricurvum kujiense DSM 16994] Length = 182 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 67/176 (38%), Positives = 93/176 (52%), Gaps = 6/176 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 GIDE GRG LAGP+ +A +IL NN G+NDSKK++ KKRE LYE I ++I I+ Sbjct: 4 CGIDEAGRGPLAGPLTIAGVIL--NNPIEGLNDSKKLTEKKRESLYELICENSIYHIARF 61 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 ID+ + + + + L + + ++K D+ + Sbjct: 62 DAAQIDELGLSQCLATGLREIMSALGEADYLYDGNSKFGVSG----LRTMVKADATVPEV 117 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +AASI+AKVTRDR M YP YGFD H GY A H + I++ G IHR TF+ Sbjct: 118 SAASILAKVTRDREMIQLASLYPQYGFDGHKGYGCAAHIEAIRQYGYCEIHRKTFK 173 >gi|134277824|ref|ZP_01764539.1| ribonuclease HII [Burkholderia pseudomallei 305] gi|134251474|gb|EBA51553.1| ribonuclease HII [Burkholderia pseudomallei 305] Length = 214 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 87/183 (47%), Positives = 122/183 (66%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 V G+DE GRG LAGPVV AA++LDP G++DSK +S KKRE L+++I + A S Sbjct: 26 EIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKRERLFDEIVAHALAYS 85 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++SAS + ID NI AT+ A+ AVE L V+P A IDG P ++ A++ GD++ Sbjct: 86 VASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPMLA-IRSEAIVGGDAL 144 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H ++E GP HR +F Sbjct: 145 VPSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAALREHGPCEHHRRSFA 204 Query: 203 PLR 205 P+R Sbjct: 205 PVR 207 >gi|260655674|ref|ZP_05861147.1| ribonuclease HII [Jonquetella anthropi E3_33 E1] gi|260629591|gb|EEX47785.1| ribonuclease HII [Jonquetella anthropi E3_33 E1] Length = 195 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 105/180 (58%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AII 81 AG+DE GRG LAGPV+ AA+IL P G+ DSKK+S KKRE+L+ + + Sbjct: 4 AGVDEAGRGPLAGPVMAAAVILSPEQKNVLVQSGLRDSKKLSAKKREKLFGLMQELGVVW 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + +AS + ID+ NI +ATL A+ AV L P +DG + A++ GD Sbjct: 64 RLQAASRRRIDRMNILQATLWAMARAVNRLPATPDGVAVDGSQEIPGISLYQQAIVGGDD 123 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + I+AAS++AKV RDRLM + YP YG H GY TA+HQ+ + GP+ +HR +F Sbjct: 124 LYPEISAASVVAKVVRDRLMTALDRLYPGYGLAQHKGYGTAQHQEALLRLGPTPLHRRSF 183 >gi|269127623|ref|YP_003300993.1| Ribonuclease H [Thermomonospora curvata DSM 43183] gi|268312581|gb|ACY98955.1| Ribonuclease H [Thermomonospora curvata DSM 43183] Length = 232 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 98/197 (49%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69 + LE ++ PVAG+DE GRGA AGP+VVAA+IL G+ DSK ++ ++RE Sbjct: 16 YGLERALQHAGFSPVAGVDEAGRGACAGPLVVAAVILPSGRRALIDGLTDSKLLTARRRE 75 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 ELY +I A+ + ++ + ++ L Sbjct: 76 ELYAQIVERAVAWATVIIPRHDIDRLGLHQCNITGMRRALAQLEVRPGYVLSDGFRVPGL 135 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AV KGD ++ +AAAS++AKVTRDRLM H++YP YGF H GY T +H + Sbjct: 136 DVPGLAVPKGDCVAACVAAASVVAKVTRDRLMVELHERYPQYGFAVHKGYVTREHTAALS 195 Query: 190 EKGPSCIHRLTFRPLRN 206 GP HRL+F + Sbjct: 196 AHGPCPEHRLSFVNVAR 212 >gi|240142860|ref|YP_002967373.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Methylobacterium extorquens AM1] gi|240012807|gb|ACS44032.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Methylobacterium extorquens AM1] Length = 222 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 116/200 (58%), Gaps = 6/200 (3%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISH 65 RP +E E + VAG+DE GRG LAG V AA+++ + DSK ++ Sbjct: 3 IRPTYERERAAGK----VVAGVDECGRGCLAGEVWAAAVVIPDWAAAGVSAVADSKILAA 58 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KRE+L E + +S +I +AS + I++ NI +AT+ A+ AV L V P L+DG + Sbjct: 59 AKREQLCEMLRTSCHAAIGTASLEEIERLNILQATMLAMSRAVAALPVRPDHVLVDGNRV 118 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P+ LPC A AV+ GD+ +IAAASI+AKV RD M H +P YG+D + GY T +H Sbjct: 119 PKGLPCAATAVVGGDATVRAIAAASIVAKVGRDAAMASLHLAHPAYGWDRNAGYGTPEHL 178 Query: 186 QVIKEKGPSCIHRLTFRPLR 205 I+ GPS HR TF +R Sbjct: 179 AAIRTHGPSPHHRRTFAGVR 198 >gi|218660707|ref|ZP_03516637.1| ribonuclease HII [Rhizobium etli IE4771] Length = 215 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 94/173 (54%), Positives = 128/173 (73%) Query: 34 RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDK 93 RG LAGPVV AA+ILDP IP G+NDSK++S ++REEL+ +I ++A +SI+S+S ID+ Sbjct: 30 RGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREELFVQILATATVSIASSSSTRIDE 89 Query: 94 HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA 153 +I KA+LDA+ A+ +L V L DG +P L C AV+KGD+ S+SIAAASI+A Sbjct: 90 TDIRKASLDAMRRAICSLAVPASYVLTDGLDVPPGLDCPGQAVVKGDARSVSIAAASIVA 149 Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 KVTRDR+M AH +PDYGF +HVGY TA+H+ I++ GP +HR++FRPLR Sbjct: 150 KVTRDRMMARAHNVFPDYGFAAHVGYGTAQHRAGIEKHGPCSLHRMSFRPLRK 202 >gi|58578839|ref|YP_197051.1| ribonuclease HII [Ehrlichia ruminantium str. Welgevonden] gi|58616897|ref|YP_196096.1| ribonuclease HII [Ehrlichia ruminantium str. Gardel] gi|75356600|sp|Q5FFD4|RNH2_EHRRG RecName: Full=Ribonuclease HII; Short=RNase HII gi|58416509|emb|CAI27622.1| Ribonuclease HII [Ehrlichia ruminantium str. Gardel] gi|58417465|emb|CAI26669.1| Ribonuclease HII [Ehrlichia ruminantium str. Welgevonden] Length = 220 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 82/205 (40%), Positives = 113/205 (55%), Gaps = 6/205 (2%) Query: 10 PHFELEAM---VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKIS 64 P F +E ++ + G+DEVG G+LAGPVV AA+ N INDSKK++ Sbjct: 10 PDFSIENEILKLKNNKECIIVGVDEVGYGSLAGPVVSAAVFFPNYNNETTQDINDSKKLT 69 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL-IDGR 123 K R+++Y KI + SI A ID++NI AT A+ A+ L I Sbjct: 70 PKTRQKIYNKIITRVKWSIGFAHIFEIDEYNILNATHIAMKRALTGLNAHIDIDYVIIDG 129 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + ++P A A+I GD+IS SIAAASIIAKVTRDRLM H +YP Y ++ + GY T Sbjct: 130 NKIPNIPWNAQAIIGGDTISTSIAAASIIAKVTRDRLMETLHIQYPQYNWNKNKGYGTKD 189 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H + + G + HR TF P+ +S Sbjct: 190 HITSLYKYGKTIHHRNTFTPISKIS 214 >gi|293400516|ref|ZP_06644661.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305542|gb|EFE46786.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 207 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 71/197 (36%), Positives = 105/197 (53%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++ + GIDE GRG +AGP+VVAA+ I DSKK+S KKR+ L+ Sbjct: 6 AYEIAWWKEGKKKIIGIDEAGRGPIAGPLVVAAVSFPVGFSHESIYDSKKLSEKKRKALF 65 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++I A I S Q ID+ NI++AT A+ + ++ + Sbjct: 66 QEIIQLASEYHIKIVSPQIIDEQNIYRATQLAMLELSNSF--HDADGVLTDAMPLPNASL 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD S+SIAAASI+AKVTRD +M K+YP YGF H GYPT H + + Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCIMCAYDKQYPQYGFAKHKGYPTKGHLEAMHTY 183 Query: 192 G-PSCIHRLTFRPLRNL 207 G + I+R ++ P+ + Sbjct: 184 GVINDIYRKSYGPVAAM 200 >gi|149277087|ref|ZP_01883229.1| ribonuclease HII [Pedobacter sp. BAL39] gi|149231964|gb|EDM37341.1| ribonuclease HII [Pedobacter sp. BAL39] Length = 203 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 74/177 (41%), Positives = 98/177 (55%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPV AA+IL P+ IP + DSKK++HK+R L I A +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPPDFIPGELTDSKKLNHKQRAALRIIIEQEALAWAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 H+ IDK NI A+ A++ A+E L + P IDG ++KGD L+ Sbjct: 73 VDHEEIDKINILNASFLAMHRAIEQLSLKPEYLSIDGNRFKAYTGIPHSCIVKGDGKYLN 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M +YP Y + + GYPT H++ G S HR TF Sbjct: 133 IAAASILAKTHRDEHMEQLALEYPVYQWAQNKGYPTIVHRKAALAHGLSPYHRKTFS 189 >gi|291459085|ref|ZP_06598475.1| ribonuclease HII [Oribacterium sp. oral taxon 078 str. F0262] gi|291418339|gb|EFE92058.1| ribonuclease HII [Oribacterium sp. oral taxon 078 str. F0262] Length = 247 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 75/198 (37%), Positives = 111/198 (56%), Gaps = 8/198 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E N+ + G+DE GRG LAGPVV A +L + + ++DSKK+S K+RE L+ Sbjct: 28 YEEQY--PNLSLIGGVDEAGRGPLAGPVVAACCVLPKDALILYLDDSKKLSEKRRELLFP 85 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQV---IPRSALIDGRSIPEDL 129 +IT A + + ID+ NI A+ +A+ ++ ++ P L++ + Sbjct: 86 EITKKALAFGVGIVGEKRIDEINILNASYEAMRLSILSVSSKLGRPPELLLNDAVTIPGI 145 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +I+GDS SLSIAAAS+IAKV RDRLM +++P YGF H GY TA H++ I Sbjct: 146 EIPQLPIIRGDSKSLSIAAASVIAKVIRDRLMLRYDREFPGYGFARHKGYGTALHREKIL 205 Query: 190 EKGPSCIHRLTFRPLRNL 207 KG IHR +F ++ L Sbjct: 206 SKGLCRIHRRSF--VKKL 221 >gi|58696709|ref|ZP_00372256.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila simulans] gi|58698315|ref|ZP_00373232.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila ananassae] gi|58535188|gb|EAL59270.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila ananassae] gi|58537106|gb|EAL60222.1| ribonuclease HII [Wolbachia endosymbiont of Drosophila simulans] Length = 180 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 113/179 (63%), Gaps = 2/179 (1%) Query: 29 IDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 +DEVGRG LAGPV+ AA++ D N I GINDSKK++ + R+ LYEKI S A I AS Sbjct: 1 MDEVGRGPLAGPVISAAVVFIDRNTIIDGINDSKKLTPQCRQVLYEKIISVAKFGIGMAS 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + I+ +NI +AT ++ A+ +L + L+DG P ++ Q +++ GD++S SIA Sbjct: 61 VEEINSYNILQATKLSMKRALIDLDLELDYVLVDGN-QPPEVKWQVKSIVNGDNLSTSIA 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AASI+AKVTRDRLM+ H K+P+Y + + GY T +H I G + HR F P+ Sbjct: 120 AASIVAKVTRDRLMQELHNKHPEYNWYKNKGYGTKEHLNAIGLYGITEHHRRNFAPISR 178 >gi|92118687|ref|YP_578416.1| ribonuclease HII [Nitrobacter hamburgensis X14] gi|122417043|sp|Q1QIJ1|RNH2_NITHX RecName: Full=Ribonuclease HII; Short=RNase HII gi|91801581|gb|ABE63956.1| RNase HII [Nitrobacter hamburgensis X14] Length = 267 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 96/195 (49%), Positives = 128/195 (65%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F+ E + ++ +WPVAG DEVGRG LAGPVV AA++LDP IP GI+DSK+++ +RE Sbjct: 43 PSFQHERALLKRGVWPVAGCDEVGRGPLAGPVVAAAVVLDPKRIPKGIDDSKRLTAARRE 102 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 EL+E+IT++A +++ AS ID+ NI +A+L A+ AV L +PR +DGR E Sbjct: 103 ELFEEITATASFAVAFASTARIDRDNILRASLWALARAVHALPDMPRHVFVDGRDRIEI- 161 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C VI GD I LSIAAASI+AKVTRDRLM + P YGF++H GY H + + Sbjct: 162 ACACEPVIGGDGIVLSIAAASIVAKVTRDRLMCKLAQDCPGYGFETHKGYGVPAHLEALG 221 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 222 RLGPSPHHRSFFAPV 236 >gi|83721502|ref|YP_442565.1| ribonuclease HII [Burkholderia thailandensis E264] gi|167581492|ref|ZP_02374366.1| ribonuclease HII [Burkholderia thailandensis TXDOH] gi|167619603|ref|ZP_02388234.1| ribonuclease HII [Burkholderia thailandensis Bt4] gi|257138774|ref|ZP_05587036.1| ribonuclease HII [Burkholderia thailandensis E264] gi|97182353|sp|Q2SWY4|RNH2_BURTA RecName: Full=Ribonuclease HII; Short=RNase HII gi|83655327|gb|ABC39390.1| ribonuclease HII [Burkholderia thailandensis E264] Length = 214 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 124/198 (62%), Gaps = 7/198 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P + + V G+DE GRG LAGPVV AA++LDP G++DSK +S KKR Sbjct: 16 QPALDFD-----APGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKR 70 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L+++I + A ++SAS + ID NI AT+ A+ AVE L V P A IDG P Sbjct: 71 ERLFDEIVAHALAYCVASASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPM 130 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ A++ GD++ SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H Sbjct: 131 LA-IRSEAIVGGDALVPSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAA 189 Query: 188 IKEKGPSCIHRLTFRPLR 205 ++E GP HR +F P+R Sbjct: 190 LREHGPCEHHRRSFAPVR 207 >gi|297562257|ref|YP_003681231.1| ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846705|gb|ADH68725.1| Ribonuclease H [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 232 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 1/197 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 +ELE +R VAG+DEVGRGA AGP++V A + P G+ DSK+++ K+R E+ Sbjct: 16 YELEDELRSSGARVVAGVDEVGRGAWAGPLLVCAAVPGEGAPPPGLTDSKRLTPKRRREI 75 Query: 72 YEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++ A + +S + ID+ + +A A A++ L P + ++DGR P Sbjct: 76 ADQLRPWVADHAFGWSSPEEIDEVGMTEALHRASRRALDALSPRPDAVILDGRHDFIGRP 135 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +KGD +S+AAA+I+AKV RD LM +P YGF+ GYP+ H+ + E Sbjct: 136 WRVRTCVKGDLACVSVAAAAILAKVRRDALMAELAADHPGYGFERAAGYPSPVHRAALAE 195 Query: 191 KGPSCIHRLTFRPLRNL 207 GP+ HR+++ L +L Sbjct: 196 SGPTPHHRMSWSYLDDL 212 >gi|317406254|gb|EFV86498.1| ribonuclease HII [Achromobacter xylosoxidans C54] Length = 202 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 84/204 (41%), Positives = 112/204 (54%), Gaps = 5/204 (2%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E+P + AG+DE GRG LAG V AA+ILDP G+ DSK + Sbjct: 1 MEQPDLF---AAPAQPALVTAGVDEAGRGPLAGAVYAAAVILDPARPIDGLADSKVLKAA 57 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 RE L +I + A ++SAS ID NI +ATL A+ AVE L + P+ AL+DG Sbjct: 58 TREALALEIQAHALAWCVASASVAEIDSLNILRATLLAMRRAVEGLSLAPQLALVDGN-Q 116 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 L C VIKGD++ +I+AASI+AK RD + H YP Y FD H GY TA H Sbjct: 117 APKLGCTVQTVIKGDALVPAISAASILAKTARDADLLRLHSLYPQYAFDQHKGYGTALHL 176 Query: 186 QVIKEKGPSCIHRLTFRPLRNLSV 209 Q+++E GP HR +F P++ + Sbjct: 177 QMLREHGPCAEHRRSFAPIKAFGL 200 >gi|237745358|ref|ZP_04575839.1| ribonuclease HII [Fusobacterium sp. 7_1] gi|229432587|gb|EEO42799.1| ribonuclease HII [Fusobacterium sp. 7_1] Length = 214 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 81/213 (38%), Positives = 119/213 (55%), Gaps = 14/213 (6%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSK 61 + + P + + + V G+DE GRG LAGPVV AA+IL + INDSK Sbjct: 1 MEEVMDNPLY-----LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSK 55 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN-----LQVIPR 116 K++ KKRE+LY+ I + +++ ++ + IDK NI A A+ A+++ Sbjct: 56 KLTEKKREKLYDIIMKNFYVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKEY 115 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 L+DG ++ + ++KGD+ SLS+AAASIIAKVTRDR M+ YPDY F+ H Sbjct: 116 IVLVDGNLKIKEYSGKQLPIVKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKH 175 Query: 177 VGYPTAKHQQVIKEKGPSC-IHRLTFRPLRNLS 208 GY T H + IK+KG +HR F LR ++ Sbjct: 176 KGYGTKAHIEAIKDKGAIEGVHRKVF--LRKIN 206 >gi|294085233|ref|YP_003551993.1| Ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322] gi|292664808|gb|ADE39909.1| Ribonuclease H [Candidatus Puniceispirillum marinum IMCC1322] Length = 230 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 102/227 (44%), Gaps = 30/227 (13%) Query: 6 IPERP-------HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---PF 55 +P RP E GIDE GRG AGPV VAA+ LDP P Sbjct: 1 MPPRPRPDAADPDLSREQAFE----GLTIGIDEAGRGPWAGPVTVAAVWLDPKCYDDLPA 56 Query: 56 GINDSKKISHKKREELYEKITSSAIISISSASHQYIDK---------HNIHKATLDAIYH 106 G++DSKK+ KR LY+ +T++ I + I +H D Sbjct: 57 GLDDSKKLKADKRAALYDALTTNTHIYSVISVPPAIIDAGNILQVTLQAMHDCAEDLAGQ 116 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQA-------FAVIKGDSISLSIAAASIIAKVTRDR 159 + L+DG +P AVI GD +SLSIAAASIIAK TRD Sbjct: 117 LAQAGYKSALHMLVDGSIMPPIPAPPVDGGLFTGEAVIGGDGLSLSIAAASIIAKHTRDG 176 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 +M YP YG+ +++GY T HQ+ + G + HR +++P++ Sbjct: 177 IMTELDAAYPGYGWATNMGYGTKAHQEGLATLGVTPHHRKSYKPVKR 223 >gi|326387694|ref|ZP_08209300.1| ribonuclease H [Novosphingobium nitrogenifigens DSM 19370] gi|326207740|gb|EGD58551.1| ribonuclease H [Novosphingobium nitrogenifigens DSM 19370] Length = 198 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 69/194 (35%), Positives = 102/194 (52%), Gaps = 9/194 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 V G+DE GRG LAGPVV AA+IL P G+ DSKK++ ++R L I + + Sbjct: 5 GLVVGVDEAGRGPLAGPVVAAAVILGAGA-PQGLADSKKLTARRRAWLEVGIKETCRWGL 63 Query: 84 SSASHQYIDKHNIHKATL----DAIYHAVENLQVIPRSALIDGRS----IPEDLPCQAFA 135 ID+ NI AT+ A+ ++ + LIDG A A Sbjct: 64 GVVEADEIDRINIFAATMKAMTLAVADLLDRDGGVVEMVLIDGNKTPAGRDPGWVWPARA 123 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++ GD+ +I+AASI+AK RDR+MR A +K+P YG++ + GY T +H ++E GP Sbjct: 124 IVGGDATEAAISAASILAKEHRDRIMRDAAQKWPQYGWERNAGYGTPEHLAALREHGPCV 183 Query: 196 IHRLTFRPLRNLSV 209 HR +F P+ + Sbjct: 184 FHRRSFAPVAQALL 197 >gi|111023503|ref|YP_706475.1| ribonuclease HII [Rhodococcus jostii RHA1] gi|122955111|sp|Q0S2B9|RNH2_RHOSR RecName: Full=Ribonuclease HII; Short=RNase HII gi|110823033|gb|ABG98317.1| ribonuclease H [Rhodococcus jostii RHA1] Length = 226 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 115/198 (58%), Gaps = 4/198 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREE 70 +E+ + + PVAG+DE GRGA AGP+VVAA +L P P ++DSKK++ + REE Sbjct: 18 TMESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLAPKPYPALARLDDSKKLTERTREE 77 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ IT A+ S+ S + +D+ +H A ++ + AV L P L DG +P L Sbjct: 78 LFPAITRLAVAWSVVSFPAEEVDRMGVHVANIEGMRRAVAGLSTTPGYVLTDGFRVP-GL 136 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + VI GD+ + IAAAS++AKV+RDR+M + +P YGF H GY T H ++ Sbjct: 137 PAPSLPVIGGDAAAACIAAASVLAKVSRDRVMVAMDETHPGYGFAIHKGYNTPAHLTALE 196 Query: 190 EKGPSCIHRLTFRPLRNL 207 + GP HR ++ + L Sbjct: 197 KLGPCPEHRRSWSNVAAL 214 >gi|260425244|ref|ZP_05779224.1| ribonuclease HII [Citreicella sp. SE45] gi|260423184|gb|EEX16434.1| ribonuclease HII [Citreicella sp. SE45] Length = 191 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 86/182 (47%), Positives = 126/182 (69%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DEVGRG LAGPVV AA++LDP +P G+NDSKK++ K+R L + A +SI SA Sbjct: 2 AGVDEVGRGPLAGPVVAAAVVLDPRWVPPGLNDSKKLTAKRRARLSAWLWECAEVSIGSA 61 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 S + ID+ NI +A+L A++ AV L+ P L+DGR +P LPC+A +IKGD S+SI Sbjct: 62 SVEEIDQLNILQASLLAMHRAVTGLENAPGHVLVDGRFLPPQLPCEATPIIKGDGRSVSI 121 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AAAS++AK+ RDRLMR + +P YG++++ GY + H+ ++ G + HR +F+P+ N Sbjct: 122 AAASVVAKIWRDRLMRDLAQHHPGYGWETNAGYGSKSHKLALQNLGVTPHHRRSFKPIHN 181 Query: 207 LS 208 + Sbjct: 182 IL 183 >gi|295098996|emb|CBK88085.1| RNase HII [Eubacterium cylindroides T2-87] Length = 202 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 75/184 (40%), Positives = 103/184 (55%), Gaps = 4/184 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 V GIDE GRG +AGP+VVA + + I+DSKK++ KKRE L+ IT+ A I Sbjct: 17 VLGIDEAGRGPIAGPLVVAGVCFEKGFTNEMIDDSKKLTEKKREALFSLITNEALWYQIL 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 + IDK NI++ T +A+ N V ++ L + +VIKGD SL Sbjct: 77 VIEEKIIDKKNIYRTTQEAMLEIAHNAPVDI---VLSDAMPLPSLDKEWESVIKGDQKSL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AKVTRDR M+ + YP YGF H GYPT H + + G HR ++ P+ Sbjct: 134 SIAAASILAKVTRDRYMKKLDELYPMYGFSKHKGYPTKAHIEALNIYGVLDCHRRSYGPV 193 Query: 205 RNLS 208 + + Sbjct: 194 QKML 197 >gi|332711237|ref|ZP_08431170.1| RNase HII [Lyngbya majuscula 3L] gi|332350051|gb|EGJ29658.1| RNase HII [Lyngbya majuscula 3L] Length = 209 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 84/186 (45%), Positives = 114/186 (61%), Gaps = 5/186 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRGAL GPVV AA+IL P G+ DSKK+S K+R+ L E+I A Sbjct: 20 SLVAGVDEVGRGALFGPVVAAAVILPVSVLPQLALAGVKDSKKLSRKRRQRLSEEIQGLA 79 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 +I A+ ID+ NI +A+L A+ AV L+V P LIDG + DLP ++K Sbjct: 80 LDWTIGYATSAEIDQLNILQASLLAMKRAVLKLKVKPDICLIDGLQVLPDLPIAQRNLVK 139 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SL IAAASI+AKV RD L+ KY +Y +++GY T KH+ +++ GP +HR Sbjct: 140 GDQRSLHIAAASIVAKVWRDDLIIRLAAKYSEYDLTANMGYGTKKHRLALQKYGPCRLHR 199 Query: 199 LTFRPL 204 ++F P Sbjct: 200 MSFSPC 205 >gi|282899032|ref|ZP_06307014.1| Ribonuclease HII/HIII [Cylindrospermopsis raciborskii CS-505] gi|281196172|gb|EFA71087.1| Ribonuclease HII/HIII [Cylindrospermopsis raciborskii CS-505] Length = 213 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 108/187 (57%), Gaps = 5/187 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 +AG+DEVGRGAL GPVV AA+IL + + I DSK++S +R L +++ A Sbjct: 16 GWIAGVDEVGRGALFGPVVAAAVILPNSALSILVESKIKDSKQLSVSRRHYLAQQVAQLA 75 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I A+ ID+ NI +ATL A+ AV L+ P L+DG DL + +I+ Sbjct: 76 VEWKIGYATTAEIDRLNILQATLLAMKRAVLKLKSQPSLCLVDGNQFIRDLLIEQQTIIQ 135 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SL+IAAASI+AKV RD L+ KKY Y + GY + KH +++ GPS +HR Sbjct: 136 GDRRSLNIAAASIMAKVWRDDLVVRLGKKYDMYDLHRNKGYGSRKHLLALQKYGPSPLHR 195 Query: 199 LTFRPLR 205 +F P + Sbjct: 196 RSFSPCQ 202 >gi|45644754|gb|AAS73142.1| predicted ribonuclease H [uncultured marine gamma proteobacterium EBAC20E09] Length = 180 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 103/180 (57%), Gaps = 3/180 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 +AG DEVGRG LAGPVV AA+IL + G+ DSKKIS KKRE L + I + + Sbjct: 1 MIAGTDEVGRGCLAGPVVAAAVILKED--IPGLTDSKKISPKKREFLADLILEKSFFAYG 58 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 S+ IDK NI A+L A+ A+ NL V P L+DG + DL A+I GDS Sbjct: 59 VVSNNKIDKINILNASLLAMKRAILNLPVRPSMVLVDG-TFKPDLDIPMRAIIGGDSSEN 117 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASIIAKV RD LM +P Y + GY T KH + +K G IHR TF + Sbjct: 118 AISAASIIAKVYRDNLMIKYDSIFPVYDLKGNKGYGTKKHLEALKSFGHCEIHRTTFNGV 177 >gi|256545488|ref|ZP_05472850.1| ribonuclease HII [Anaerococcus vaginalis ATCC 51170] gi|256398884|gb|EEU12499.1| ribonuclease HII [Anaerococcus vaginalis ATCC 51170] Length = 210 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 112/183 (61%), Gaps = 3/183 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 + +AGIDEVGRG LAGPVV A+I+ ++ G+ DSKK+S K+ ELY+KI + Sbjct: 18 HEKYELIAGIDEVGRGPLAGPVVACAVIMKKDSHIEGVTDSKKLSKKRMNELYQKIIDDS 77 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I S A++ IDK NI +AT A+ A+E L+ P+ LID I D + ++K Sbjct: 78 ISYSFGYANNILIDKINIKEATKLAMKDALEGLEKKPQIVLIDAERI--DTHIKQLNIVK 135 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD +I+ ASI+AKV RD++M K YP Y F+S+VGY T KH + +++ G IHR Sbjct: 136 GDLYEYAISCASILAKVRRDKIMENFSKIYPYYSFESNVGYGTKKHYEGLEKFGECPIHR 195 Query: 199 LTF 201 TF Sbjct: 196 KTF 198 >gi|256028260|ref|ZP_05442094.1| ribonuclease HII [Fusobacterium sp. D11] Length = 234 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 17/217 (7%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDS 60 + + P + + + V G+DE GRG LAGPVV AA+IL + INDS Sbjct: 17 IMEEVMDNPLY-----LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDS 71 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN--------LQ 112 KK++ KKRE+LY+ I + +++ ++ + IDK NI A A+ A+++ Sbjct: 72 KKLTEKKREKLYDIIMKNFYVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKD 131 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 L+DG ++ + ++KGD+ SLS+AAASIIAKVTRDR M+ YPDY Sbjct: 132 KKEYIVLVDGNLKIKEYSGKQLPIVKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYS 191 Query: 173 FDSHVGYPTAKHQQVIKEKGPSC-IHRLTFRPLRNLS 208 F+ H GY T H + IK+KG +HR F LR ++ Sbjct: 192 FEKHKGYGTKAHIEAIKDKGAIEGVHRKVF--LRKIN 226 >gi|110639206|ref|YP_679415.1| RNase HII [Cytophaga hutchinsonii ATCC 33406] gi|123163320|sp|Q11R91|RNH2_CYTH3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|110281887|gb|ABG60073.1| RNase HII [Cytophaga hutchinsonii ATCC 33406] Length = 202 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 76/187 (40%), Positives = 114/187 (60%), Gaps = 5/187 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE GRG +AGPVV AA+IL PN +NDSKK++ K+RE L + I A ++ Sbjct: 16 AGLDEAGRGCMAGPVVAAAVILPPNYKHSLLNDSKKLTIKQRELLRQDIIRDALDYHVAE 75 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL-IDGRSIPEDLPCQAFAVIKGDSISL 144 SH ID+ NI AT+ A++ AV+ L+ + L IDG + + +++GD + L Sbjct: 76 VSHTVIDQINILNATMKAMHKAVKGLKKQQPNLLLIDGNRFKQYTGIEHVCIVQGDGLYL 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT--FR 202 SIAAAS++AK RD LM K++P+YG+D + GY T KH+ ++ G + HR + F+ Sbjct: 136 SIAAASVLAKTHRDSLMERLAKEHPEYGWDVNAGYATEKHRLAMETHGLTPYHRTSFHFK 195 Query: 203 PLRNLSV 209 P + L + Sbjct: 196 P-KQLDL 201 >gi|76809916|ref|YP_333960.1| ribonuclease HII [Burkholderia pseudomallei 1710b] gi|254189278|ref|ZP_04895789.1| ribonuclease HII [Burkholderia pseudomallei Pasteur 52237] gi|254259229|ref|ZP_04950283.1| ribonuclease HII [Burkholderia pseudomallei 1710a] gi|97182323|sp|Q3JR43|RNH2_BURP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|76579369|gb|ABA48844.1| ribonuclease HII [Burkholderia pseudomallei 1710b] gi|157936957|gb|EDO92627.1| ribonuclease HII [Burkholderia pseudomallei Pasteur 52237] gi|254217918|gb|EET07302.1| ribonuclease HII [Burkholderia pseudomallei 1710a] Length = 214 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 125/198 (63%), Gaps = 7/198 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P + + V G+DE GRG LAGPVV AA++LDP G++DSK +S KKR Sbjct: 16 QPALDFD-----APGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKR 70 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L+++I + A S++SAS + ID NI AT+ A+ AVE L V+P A IDG P Sbjct: 71 ERLFDEIVAHALAYSVASASVEEIDSLNILHATMLAMKRAVEGLSVLPTLAKIDGNRCPM 130 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ A++ GD++ SI+AASI+AKVTRDR + H+++P YGFD+H GY T +H Sbjct: 131 LA-IRSEAIVGGDALVPSISAASILAKVTRDRTLVELHQQFPMYGFDAHAGYGTPQHLAA 189 Query: 188 IKEKGPSCIHRLTFRPLR 205 ++E GP HR +F P+R Sbjct: 190 LREHGPCEHHRRSFAPVR 207 >gi|213610034|ref|ZP_03369860.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 184 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 83/179 (46%), Positives = 108/179 (60%), Gaps = 2/179 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSAS 87 +DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A S+ A Sbjct: 1 MDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSLGRAE 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 ID+ NI AT+ A+ AV L + P LIDG P +LP + AV+KGDS I+ Sbjct: 61 AHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCP-ELPVPSMAVVKGDSRVAEIS 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AASI+AKVTRD M +P YGF H GYPTA H + + + G + HR +F P++ Sbjct: 120 AASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPVKR 178 >gi|134299893|ref|YP_001113389.1| ribonuclease HII [Desulfotomaculum reducens MI-1] gi|189043592|sp|A4J661|RNH2_DESRM RecName: Full=Ribonuclease HII; Short=RNase HII gi|134052593|gb|ABO50564.1| Ribonuclease H [Desulfotomaculum reducens MI-1] Length = 198 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 79/184 (42%), Positives = 114/184 (61%), Gaps = 2/184 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 G+DE GRG+ + +A ILDP + G+ DSKK+S +KRE L E+I A I+ Sbjct: 5 CGVDETGRGSCISGIYASACILDPAHPIEGLRDSKKLSARKREILAEEIKQYALSWCIAQ 64 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + +++ N+H ATL A+ A+E L + +DG ++ A A++KGD + + Sbjct: 65 ASLEEVEQLNVHHATLLAMKRAIEGLSIRANKVYVDGI-HLPEVDIPAEAIVKGDDLIPA 123 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 I+AASI+AKV RD M H+KYP YGF+SH GY T H++ +K+ GPS IHR T+ P+R Sbjct: 124 ISAASILAKVARDGAMLEYHEKYPQYGFNSHKGYLTKAHREALKKYGPSPIHRKTYAPIR 183 Query: 206 NLSV 209 L V Sbjct: 184 ELLV 187 >gi|317508413|ref|ZP_07966083.1| ribonuclease HII [Segniliparus rugosus ATCC BAA-974] gi|316253260|gb|EFV12660.1| ribonuclease HII [Segniliparus rugosus ATCC BAA-974] Length = 215 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREE 70 E+++R + VAG+DE GRGA AGP+VVA+ +L P G++DSK+++ +KRE Sbjct: 3 AFESVLRRAGLAAVAGVDEAGRGACAGPLVVASCVLKPRSARALPGLDDSKRLTAQKREW 62 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I A + +D +H+A L+ + AV L +P L+DG +P Sbjct: 63 LEPRIFQQAASWHVVVMPPGEVDAMGVHQANLEGMRRAVAGLAEVPDYVLLDGFEVPRLG 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A V+ GD + IAAAS++AKV RDR+M + +P YGF +H GY TA H + Sbjct: 123 A-PARRVVGGDRLVACIAAASVLAKVARDRIMAELDEAHPGYGFATHKGYCTAAHMAALA 181 Query: 190 EKGPSCIHRLTFRPL 204 E GP HR ++ P+ Sbjct: 182 ELGPCDQHRYSYAPV 196 >gi|254499206|ref|ZP_05111886.1| RNase H ribonuclease [Legionella drancourtii LLAP12] gi|254351596|gb|EET10451.1| RNase H ribonuclease [Legionella drancourtii LLAP12] Length = 187 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 81/185 (43%), Positives = 106/185 (57%), Gaps = 4/185 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAG VV AA+IL G+ DSKK++ KKR+ L +I A + Sbjct: 6 LIAGVDEVGRGPLAGAVVTAAVILKE--PIEGLADSKKLTPKKRKLLSLQIQERALAFAY 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID NIH+ATL A+ AVE L + P L+DG + L A+I+GDS+ Sbjct: 64 GRAEVDEIDALNIHQATLLAMRRAVEALPIKPDEVLVDG-AHAPRLAVPCRAIIQGDSLI 122 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD M YP YGF H GYPT H++ + GP IHR ++ P Sbjct: 123 PEISAASILAKVLRDEEMEALDAIYPGYGFAGHKGYPTVAHREALVHLGPCVIHRRSYAP 182 Query: 204 LRNLS 208 + L Sbjct: 183 VAALL 187 >gi|19704706|ref|NP_604268.1| ribonuclease HII [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|39932432|sp|Q8RDX3|RNH2_FUSNN RecName: Full=Ribonuclease HII; Short=RNase HII gi|19715020|gb|AAL95567.1| Ribonuclease HII [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 215 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 85/214 (39%), Positives = 120/214 (56%), Gaps = 13/214 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-IND 59 M I + P + + + V G+DE GRG LAGPVV AA+IL IND Sbjct: 1 MLMEEIMDNPLY-----LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYTEELDEIND 55 Query: 60 SKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN----LQVIP 115 SKK++ KKRE+LY+ I + +++ ++ + IDK NI A A+ A+++ Sbjct: 56 SKKLTEKKREKLYDIIMKNFDVAVGISTVEEIDKLNILNADFLAMRRALKDLKSLKNEKE 115 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 + L+DG ++ + ++KGD+ SLSIAAASIIAKVTRDRLM+ YPDY F+ Sbjct: 116 YTVLVDGNLKIKEYIGKQLPIVKGDAKSLSIAAASIIAKVTRDRLMKDLANIYPDYSFEK 175 Query: 176 HVGYPTAKHQQVIKEKGPSC-IHRLTFRPLRNLS 208 H GY T H + IK+KG +HR F LR + Sbjct: 176 HKGYGTKTHIEAIKDKGAIEGVHRKVF--LRKIL 207 >gi|308234480|ref|ZP_07665217.1| Ribonuclease H [Atopobium vaginae DSM 15829] gi|328944073|ref|ZP_08241538.1| ribonuclease HII [Atopobium vaginae DSM 15829] gi|327492042|gb|EGF23816.1| ribonuclease HII [Atopobium vaginae DSM 15829] Length = 270 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 101/181 (55%), Gaps = 3/181 (1%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 + + G+DEVGRG LAGP+ VAA+IL +G+NDSKK++ +RE L +I + A Sbjct: 85 GVGTIMGVDEVGRGPLAGPLAVAAVILPQEPHIWGLNDSKKLTSLERERLDTQIRAHARA 144 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + I+ S + ID+ I + + A+ V P LIDG I + +IKGD Sbjct: 145 VGIAFTSPEDIDRFGIVSCLRETMKCAILQTGVEPDCVLIDGNPIHAHP--KEKTLIKGD 202 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SIAAASI+AKV RDRLM+ YP Y F + GY + H IK G S +HR + Sbjct: 203 SRIASIAAASIVAKVARDRLMQDLDVCYPQYHFAENKGYGSKAHIDAIKTYGLSPVHRKS 262 Query: 201 F 201 F Sbjct: 263 F 263 >gi|56750670|ref|YP_171371.1| ribonuclease HII [Synechococcus elongatus PCC 6301] gi|81299688|ref|YP_399896.1| ribonuclease HII [Synechococcus elongatus PCC 7942] gi|81596478|sp|Q5N4B8|RNH2_SYNP6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|97189413|sp|Q31PW0|RNH2_SYNE7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|56685629|dbj|BAD78851.1| ribonuclease HII [Synechococcus elongatus PCC 6301] gi|81168569|gb|ABB56909.1| RNase HII [Synechococcus elongatus PCC 7942] Length = 215 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 79/212 (37%), Positives = 114/212 (53%), Gaps = 12/212 (5%) Query: 10 PHFELEAMVREKNMWP--VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKI 63 P L++ VAG+DEVGRG L GPVV AA+IL G+ DSK++ Sbjct: 3 PKTRLDSDFFGPGDRWQTVAGVDEVGRGCLFGPVVTAAVILPETAIAPLQQAGVTDSKRL 62 Query: 64 SHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S ++R++LY I A+ + AS I++ NI +AT A+ A+ L LIDG Sbjct: 63 SQRQRQQLYPLICEVALATGWGLASVAEIERWNILQATFLAMRRAIAKLDRPISRCLIDG 122 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 L VI+GD ++IAAASI+AKV RDRL+ ++YP Y H GY TA Sbjct: 123 NQQVPQLTYPQTTVIQGDRHCITIAAASILAKVWRDRLIERLDERYPGYALGRHKGYGTA 182 Query: 183 KHQQVIKEKGPSCIHRLTF-----RPLRNLSV 209 +H+Q I + GP+ +HR+ F +P + + + Sbjct: 183 QHRQAILQLGPTPLHRIRFLRSLRQPSQQIDL 214 >gi|317063087|ref|ZP_07927572.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185] gi|313688763|gb|EFS25598.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185] Length = 216 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 83/180 (46%), Positives = 108/180 (60%), Gaps = 4/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAG VV AA+ I D N+ INDSK+IS KKRE LY+ + + + Sbjct: 31 IIGVDEAGRGPLAGSVVAAAVKIKDYNSDLDEINDSKQISEKKRERLYDVVKEHFYVGVG 90 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL---IDGRSIPEDLPCQAFAVIKGDS 141 A + ID+ NI AT A+ A+ENL+ +DG + + ++KGD Sbjct: 91 VADAKEIDEINILNATFLAMRRALENLKKECEGEYLVLVDGNFKIREYKGRQEPIVKGDG 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SLSIAAASIIAKVTRDR+MR KYP YGF+ H GY T +H+ I+E G IHR +F Sbjct: 151 KSLSIAAASIIAKVTRDRMMREEAVKYPLYGFEKHKGYGTKQHRDAIEEHGVLDIHRKSF 210 >gi|257468837|ref|ZP_05632931.1| ribonuclease HII [Fusobacterium ulcerans ATCC 49185] Length = 239 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 83/180 (46%), Positives = 108/180 (60%), Gaps = 4/180 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAG VV AA+ I D N+ INDSK+IS KKRE LY+ + + + Sbjct: 54 IIGVDEAGRGPLAGSVVAAAVKIKDYNSDLDEINDSKQISEKKRERLYDVVKEHFYVGVG 113 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL---IDGRSIPEDLPCQAFAVIKGDS 141 A + ID+ NI AT A+ A+ENL+ +DG + + ++KGD Sbjct: 114 VADAKEIDEINILNATFLAMRRALENLKKECEGEYLVLVDGNFKIREYKGRQEPIVKGDG 173 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SLSIAAASIIAKVTRDR+MR KYP YGF+ H GY T +H+ I+E G IHR +F Sbjct: 174 KSLSIAAASIIAKVTRDRMMREEAVKYPLYGFEKHKGYGTKQHRDAIEEHGVLDIHRKSF 233 >gi|167837027|ref|ZP_02463910.1| ribonuclease HII [Burkholderia thailandensis MSMB43] Length = 214 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 87/198 (43%), Positives = 123/198 (62%), Gaps = 7/198 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P + + V G+DE GRG LAGPVV AA++LDP G++DSK +S KKR Sbjct: 16 QPALDFD-----APGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIVGLDDSKALSAKKR 70 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L+++I + A I+SAS + ID NI AT+ A+ AVE L V P A IDG P Sbjct: 71 ERLFDEIVAHALGYCIASASVEEIDTLNILHATMLAMKRAVEGLAVRPTLAKIDGNRCPA 130 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ A++ GD++ SI+AASI+AKVTRDR++ H+++P YGFD+H GY T +H Sbjct: 131 LA-IRSEAIVGGDALVPSISAASILAKVTRDRMLVELHQQFPMYGFDAHAGYGTPQHLAA 189 Query: 188 IKEKGPSCIHRLTFRPLR 205 ++ GP HR +F P+R Sbjct: 190 LRAHGPCEHHRRSFAPVR 207 >gi|220931581|ref|YP_002508489.1| Ribonuclease H [Halothermothrix orenii H 168] gi|219992891|gb|ACL69494.1| Ribonuclease H [Halothermothrix orenii H 168] Length = 308 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 85/194 (43%), Positives = 123/194 (63%), Gaps = 1/194 (0%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 L+ + ++ +AG+DE GRG LAGPVV AA++ P G++DSKK++ K+RE L+ Sbjct: 62 SLQNNLFKEGFHFIAGVDEAGRGPLAGPVVAAAVVFKPETKVLGLDDSKKLTAKERETLF 121 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E+I A I + ++ IDK NI A+L A+ A+++L LIDG++ +L Sbjct: 122 EEIYDRALSIGVGIVDNKDIDKLNILNASLKAMKKALDSLSCPVDYILIDGKNKLSELNI 181 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + AVI GD+ IAAASIIAKVTRDR++ HKKYP+YGF ++ GY T +H + +K Sbjct: 182 KQQAVIDGDNKVNVIAAASIIAKVTRDRILDKLHKKYPEYGFINNKGYGTREHIEALKAY 241 Query: 192 GPSCIHRLTFRPLR 205 GPS IHR +F +R Sbjct: 242 GPSPIHRYSFSLVR 255 >gi|119952851|ref|YP_945060.1| ribonuclease HII [Borrelia turicatae 91E135] gi|119861622|gb|AAX17390.1| ribonuclease HII [Borrelia turicatae 91E135] Length = 182 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 77/181 (42%), Positives = 108/181 (59%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GPV+ AA+I N ++DSKK++ KRE L I ++ + Sbjct: 2 MICGIDEVGRGCIFGPVLSAAVIFKGNPKFLNALDDSKKLNKSKREYLSSLILENSYYAF 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ++ IDK NIH A+L A+ A E L + L+DG+ IP+ + A+IKGDSI Sbjct: 62 AEVPNEIIDKINIHHASLLAMQIAYEKLNIECNLVLVDGKFIPKIKAKKIQAIIKGDSII 121 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G S +HR +F+ Sbjct: 122 NEIKAASIIAKVQRDKLMDEYDKIYPLYALKKNKGYPTKEHKDAIKKYGISRLHRRSFQL 181 Query: 204 L 204 + Sbjct: 182 I 182 >gi|291294813|ref|YP_003506211.1| ribonuclease H [Meiothermus ruber DSM 1279] gi|290469772|gb|ADD27191.1| Ribonuclease H [Meiothermus ruber DSM 1279] Length = 215 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 78/208 (37%), Positives = 104/208 (50%), Gaps = 17/208 (8%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREE 70 LE+ + + VAG+DE GRGALAGPVV AA+IL P P + DSK ++ + RE Sbjct: 3 ALESDWWKLGLR-VAGVDEAGRGALAGPVVAAAVILPPPKEPALYPFRDSKTLTPRAREH 61 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQV-------------IPR 116 L E++ + A + A ID+ I +AT A A+E L+V Sbjct: 62 LAEQVRAVALAWGVGWAEVAEIDRLGILRATHLAAARALEQLKVSPEALLTDYLRLEQEW 121 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + D P A K D S ++AAASI+AKV RDR M ++YP YGF H Sbjct: 122 QQYLRNNPSRPDAPHLLRAPPKADRHSPTVAAASILAKVARDRYMEALEQRYPGYGFAQH 181 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 GY T H + +K GP HR TF P+ Sbjct: 182 KGYGTTLHLRALKALGPCGAHRRTFAPV 209 >gi|313901245|ref|ZP_07834733.1| ribonuclease HII [Clostridium sp. HGF2] gi|312954203|gb|EFR35883.1| ribonuclease HII [Clostridium sp. HGF2] Length = 207 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 105/197 (53%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E + ++ + GIDE GRG +AGP+VVAA+ P I DSKK+S KKR L+ Sbjct: 6 EYEQVWWQQGKRCIVGIDEAGRGPIAGPLVVAAVAFPPGYSHPEIYDSKKLSDKKRRALF 65 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ + A I + ID+ NI++AT A+ + ++ Sbjct: 66 HEVVAQALEYHIRIIEPKIIDELNIYRATQRAMQDISDMFA--HADGVLTDAMPLPHNER 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD S+SIAAASI+AKVTRD +M ++YP YGF H GYPT H + + Sbjct: 124 DVISLVKGDQKSVSIAAASILAKVTRDCMMEAYDRQYPQYGFARHKGYPTKAHIEALHTY 183 Query: 192 G-PSCIHRLTFRPLRNL 207 G + ++R ++ P+ + Sbjct: 184 GVITGLYRESYGPVAAM 200 >gi|294340693|emb|CAZ89085.1| Ribonuclease HII (RNase HII) [Thiomonas sp. 3As] Length = 214 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 82/185 (44%), Positives = 114/185 (61%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG DEVGRG AGPVV AA++LDP + G+ DSK +S ++REEL I + + SI Sbjct: 17 LIAGCDEVGRGPWAGPVVAAAVVLDPAHPIAGLADSKLLSARRREELDAHIRAYSLAWSI 76 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + +S + ID+ NI +ATL A+ AV L L+DG P+ A++ GD++ Sbjct: 77 AESSVEEIDQRNILQATLLAMQRAVAALPCKIDLLLVDGNQTPQVAM-PCRAIVGGDAVQ 135 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASIIAKV RDRLM ++YP YGF+ H GY TA H+ + GP +HR +F P Sbjct: 136 PAISAASIIAKVYRDRLMTELAQRYPGYGFERHSGYGTAAHRAALLTLGPCAVHRRSFAP 195 Query: 204 LRNLS 208 +R L Sbjct: 196 IRRLL 200 >gi|296136565|ref|YP_003643807.1| Ribonuclease H [Thiomonas intermedia K12] gi|295796687|gb|ADG31477.1| Ribonuclease H [Thiomonas intermedia K12] Length = 214 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 82/185 (44%), Positives = 113/185 (61%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG DEVGRG AGPVV AA++LDP + G+ DSK +S ++REEL +I + + SI Sbjct: 17 LIAGCDEVGRGPWAGPVVAAAVVLDPAHPIAGLADSKLLSARRREELDAQIRAHSLGWSI 76 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + +S + ID+ NI +ATL A+ AV L L+DG P+ A++ GD+ Sbjct: 77 AESSVEEIDQRNILQATLLAMQRAVAALPCKIDLLLVDGNQTPQVAM-PCRAIVGGDAAE 135 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASIIAKV RDRLM ++YP YGF+ H GY TA H+ + GP HR +F P Sbjct: 136 PAISAASIIAKVYRDRLMAELAQRYPGYGFERHSGYGTAAHRAALLTLGPCAEHRRSFAP 195 Query: 204 LRNLS 208 +R L Sbjct: 196 IRRLL 200 >gi|317121802|ref|YP_004101805.1| ribonuclease H [Thermaerobacter marianensis DSM 12885] gi|315591782|gb|ADU51078.1| Ribonuclease H [Thermaerobacter marianensis DSM 12885] Length = 327 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 78/184 (42%), Positives = 107/184 (58%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DEVGRG LAGPVV AA+IL + G++DSK++ R+ L + A + Sbjct: 112 GRVAGVDEVGRGCLAGPVVAAAVILSGDACLPGLDDSKRLKPAARDGLAAAVRRQALAWA 171 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A+ ID NI AT A+ A++ L V P+ ++DGRS DL AV+ GD+ Sbjct: 172 VGIATPAEIDALNIWHATRLAMRRALDALPVPPQRVVVDGRSPG-DLGYPVEAVVDGDAR 230 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +IAAAS++AKV RD M + YP YGF H GY TA+H+Q + GP HR +F Sbjct: 231 FAAIAAASVVAKVFRDAWMARLDRVYPVYGFARHKGYATAEHRQALALYGPCPEHRRSFL 290 Query: 203 PLRN 206 P+R Sbjct: 291 PVRQ 294 >gi|213964538|ref|ZP_03392738.1| ribonuclease HII [Corynebacterium amycolatum SK46] gi|213952731|gb|EEB64113.1| ribonuclease HII [Corynebacterium amycolatum SK46] Length = 205 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 65/194 (33%), Positives = 90/194 (46%), Gaps = 2/194 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREEL 71 +E + ++ + PVAG+DE GRGA AGP+V+AA L P + DSKK++ RE L Sbjct: 1 MEVALAKRGLGPVAGVDEAGRGACAGPIVIAACCLPERPIAELDKLTDSKKLTPAARERL 60 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I AI + + ++ Sbjct: 61 FPLIQRFAISFCVTTIPASYIDQFGIQDANVTGMRRAVAGLEQRPGYVLTDALKVSGFTA 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 VI GDS IAAAS++AKVTRDR+M +KYPDYG H GY TA H + I Sbjct: 121 PYLPVIGGDSTCRCIAAASVLAKVTRDRIMVDLSEKYPDYGLAGHKGYGTASHMEAISRH 180 Query: 192 GPSCIHRLTFRPLR 205 G + HR ++R +R Sbjct: 181 GATPEHRWSYRNVR 194 >gi|300933906|ref|ZP_07149162.1| ribonuclease HII [Corynebacterium resistens DSM 45100] Length = 212 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 75/197 (38%), Positives = 104/197 (52%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREE 70 ++EA + + PVAG+DE GRGA GP+ +AA IL +IP + DSKK++ K+REE Sbjct: 2 DMEAQLVAAGLGPVAGVDEAGRGACCGPISIAACILPEGDIPELARLTDSKKLTEKRREE 61 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A +I S + IDK I A + + AV NL + P L D L Sbjct: 62 LFGVIQEVANSYAIIHISAEEIDKLGIQHANVSGMRRAVANLDIEPGYVLTDAV-QVPGL 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 V+KGD + I+AAS++AKV+RDR MR +YP YG H GY T H + Sbjct: 121 AQPHLPVVKGDLMVRCISAASVLAKVSRDRFMRELDHEYPGYGLAGHKGYGTKAHMDAVS 180 Query: 190 EKGPSCIHRLTFRPLRN 206 G + HR T+ + Sbjct: 181 LHGATPYHRYTYSNVAK 197 >gi|124515656|gb|EAY57165.1| ribonuclease HII [Leptospirillum rubarum] gi|206602288|gb|EDZ38770.1| Ribonuclease HII [Leptospirillum sp. Group II '5-way CG'] Length = 228 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 87/200 (43%), Positives = 110/200 (55%), Gaps = 8/200 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHK 66 P +LE +K VAG+DEVGRGALAGPVV AA+IL GI DSK +S Sbjct: 4 PQADLEREFYKKGFLRVAGVDEVGRGALAGPVVAAAVILPMPLEFFENIGIRDSKLLSPS 63 Query: 67 KREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR L +++ S S+ ++ I+ NI +ATL A+ AVE L P L+DGR I Sbjct: 64 KRVALSDRLRSLLFSWSVGESTVSEINALNIRRATLLAMKRAVEGLPEFPDILLVDGREI 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 DL C+ + GD LSIAAASIIAKV RD +M Y YG + GY TA+H+ Sbjct: 124 VPDLVCKQESFTGGDRRILSIAAASIIAKVYRDNMMSELDNAYAGYGLAENKGYGTAQHR 183 Query: 186 QVIKEKGPSCIHR----LTF 201 + +G S IHR TF Sbjct: 184 DGLLLRGVSSIHRAVFCKTF 203 >gi|73666806|ref|YP_302822.1| ribonuclease H [Ehrlichia canis str. Jake] gi|97182460|sp|Q3YST1|RNH2_EHRCJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|72393947|gb|AAZ68224.1| Ribonuclease H [Ehrlichia canis str. Jake] Length = 209 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 118/200 (59%), Gaps = 6/200 (3%) Query: 10 PHFELEAMVRE---KNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKIS 64 P F +E + + K + G+DEVG G+LAGPVV AA N I + I DSKK++ Sbjct: 2 PDFSIENEISKSINKKNCIIVGVDEVGYGSLAGPVVSAASFFLRHDNEIIYNIKDSKKLT 61 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR E+Y ITS SI A ID+HNI AT A+ A+ L ++DG Sbjct: 62 PKKRIEVYNTITSIVKWSIGFADVYEIDQHNILNATHLAMQRALNGLNCDIDYVIVDGNK 121 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P DLP A++ GD+IS+SIAAASIIAKVTRD+LM H +YP+Y ++ + GY T H Sbjct: 122 VP-DLPWNRKAIVDGDNISVSIAAASIIAKVTRDKLMETLHTQYPEYQWNKNKGYGTKHH 180 Query: 185 QQVIKEKGPSCIHRLTFRPL 204 + + + G + HR TF PL Sbjct: 181 LESLYKYGKTIHHRNTFAPL 200 >gi|237785759|ref|YP_002906464.1| Ribonuclease HII [Corynebacterium kroppenstedtii DSM 44385] gi|237758671|gb|ACR17921.1| Ribonuclease HII [Corynebacterium kroppenstedtii DSM 44385] Length = 261 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 2/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREE 70 E + + + PVAG+DE GRGA GP+ +AA IL P + + DSKK+S RE+ Sbjct: 55 TYEDALVKAGLGPVAGVDEAGRGACCGPMAIAACILPAKPIHPLDKLTDSKKLSPTMREK 114 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L+ I SA +A A + ++ + L Sbjct: 115 LFPIIKDSAESWSVILIPAADIDKYGVQAMNIAGMRRAVGVLDQRPHYVLTDAMRVDGLT 174 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GDS + IAAAS++AKVTRDR M ++YP YG + H GY TA+H ++ Sbjct: 175 QPHLPIIGGDSAARCIAAASVLAKVTRDRYMCDLAERYPGYGLEKHKGYGTAQHIDAVRL 234 Query: 191 KGPSCIHRLTFRPL 204 G + HR T+R + Sbjct: 235 HGGTPEHRYTYRNV 248 >gi|221133301|ref|ZP_03559606.1| ribonuclease H [Glaciecola sp. HTCC2999] Length = 189 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 107/181 (59%), Gaps = 2/181 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG L G VV AA+ILDP +NDSKK+S KKRE LY I A +I Sbjct: 2 LIAGVDEVGRGPLVGDVVTAAVILDPARPIAALNDSKKLSEKKREALYPIIKEQALAWAI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A+ ID+ NI +AT+ A+ AV L + P +DG +P D + A++KGD Sbjct: 62 GRATPAEIDELNILRATILAMTRAVAGLGIRPDFVQVDGNRLP-DWDYASEAIVKGDGSI 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AKV RD+ M + K +P+YGF H GYPT H ++ +R +F+P Sbjct: 121 ACISAASILAKVVRDQEMVVLDKLHPEYGFAQHKGYPTKAHLACLEHLPILSCYRKSFKP 180 Query: 204 L 204 + Sbjct: 181 V 181 >gi|253682672|ref|ZP_04863469.1| ribonuclease HII (RNase HII) [Clostridium botulinum D str. 1873] gi|253562384|gb|EES91836.1| ribonuclease HII (RNase HII) [Clostridium botulinum D str. 1873] Length = 269 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 110/196 (56%), Gaps = 8/196 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHK 66 ++ ++ N +AG DEVGRG LAGP+V AA+ILD + + INDSKKI + Sbjct: 68 YQFDSQYISTN-GYLAGCDEVGRGPLAGPIVAAAVILDLEFANNDKLILKINDSKKIKPE 126 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 REEL E I AI I+ + ID I + + +V L+V P AL DG I Sbjct: 127 LREELAEIIKEKAISYCIAEIDNLEIDNKGIAWCNNEVLQRSVNGLRVKPNLALSDGYKI 186 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + V+KGD+ S SIA ASIIAKV RD+LM+ + Y +Y FD ++GY T +H Sbjct: 187 K-NCSIDNKFVVKGDAKSASIACASIIAKVHRDKLMQKYSEIYKEYAFDKNMGYGTKEHI 245 Query: 186 QVIKEKGPSCIHRLTF 201 IK+ G + IHR +F Sbjct: 246 DSIKKYGYTPIHRKSF 261 >gi|83945341|ref|ZP_00957689.1| ribonuclease HII [Oceanicaulis alexandrii HTCC2633] gi|83851175|gb|EAP89032.1| ribonuclease HII [Oceanicaulis alexandrii HTCC2633] Length = 202 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 77/183 (42%), Positives = 107/183 (58%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISI 83 +AG+DE GRG LAGPVV AA+IL N ++DSKK+S K+R L I + A + + Sbjct: 9 LIAGVDEAGRGPLAGPVVCAAVILPANFSALDQLDDSKKLSEKRRAALSAIIRAEARVGV 68 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ N+ AT+ A+ AVE L VIP LIDG +P L A A++ GD Sbjct: 69 GIAEPVEIDRLNVLHATMAAMVRAVEGLGVIPDEILIDGNRVPAGLSAPARAIVGGDGRE 128 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAK RD++M A ++ YG H GYP+ H+ ++ G + IHRL++ P Sbjct: 129 ACIGAASIIAKTLRDQIMIEAENRFSGYGLAGHKGYPSPSHKAALENLGAAPIHRLSYAP 188 Query: 204 LRN 206 ++ Sbjct: 189 VQQ 191 >gi|118466028|ref|YP_882929.1| ribonuclease HII [Mycobacterium avium 104] gi|189043629|sp|A0QJ41|RNH2_MYCA1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|118167315|gb|ABK68212.1| ribonuclease HII [Mycobacterium avium 104] Length = 230 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE Sbjct: 10 TLESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGKLESLAALDDSKKLTESVRER 69 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A + +D+ +H A ++ + AV L + P L DG +P L Sbjct: 70 LFPVIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GL 128 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD+++ IAAAS++AKV+RDRLM ++P YGF H GY T H + Sbjct: 129 AVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAALA 188 Query: 190 EKGPSCIHRLTFRPLRN 206 GP HR +F +R Sbjct: 189 RLGPCPQHRHSFINVRR 205 >gi|302878990|ref|YP_003847554.1| Ribonuclease H [Gallionella capsiferriformans ES-2] gi|302581779|gb|ADL55790.1| Ribonuclease H [Gallionella capsiferriformans ES-2] Length = 204 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 88/192 (45%), Positives = 123/192 (64%), Gaps = 2/192 (1%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E + ++ + G+DE GRG LAGPV AA+ILDPNN G+NDSKK+S K+RE+L Sbjct: 8 EMALNDEKFTLICGVDEAGRGPLAGPVSAAAVILDPNNPIPGLNDSKKLSEKQREKLASL 67 Query: 75 ITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I A +++ A+ + ID+ NI +ATL A+ AV+ LQV P+ L+DG P D + Sbjct: 68 IRECALAWAVAYATVEEIDRLNILQATLLAMRRAVQALQVQPQLVLVDGLYCP-DTGIAS 126 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 A++KGDS +I+AASI+AK RD LM ++YP YGF H GYPTA H ++ G Sbjct: 127 EAIVKGDSKVAAISAASILAKTDRDALMLQLDEQYPHYGFALHKGYPTAAHLAALQAHGV 186 Query: 194 SCIHRLTFRPLR 205 S +HR +F+P+R Sbjct: 187 SVVHRRSFKPVR 198 >gi|41409068|ref|NP_961904.1| ribonuclease HII [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413495|sp|Q73VP3|RNH2_MYCPA RecName: Full=Ribonuclease HII; Short=RNase HII gi|41397427|gb|AAS05287.1| RnhB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 239 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE Sbjct: 19 TLESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGKLESLAALDDSKKLTESVRER 78 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A + +D+ +H A ++ + AV L + P L DG +P L Sbjct: 79 LFPVIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD+++ IAAAS++AKV+RDRLM ++P YGF H GY T H + Sbjct: 138 AVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAALA 197 Query: 190 EKGPSCIHRLTFRPLRN 206 GP HR +F +R Sbjct: 198 RLGPCPQHRHSFINVRR 214 >gi|226366005|ref|YP_002783788.1| ribonuclease HII [Rhodococcus opacus B4] gi|254807984|sp|C1B2S6|RNH2_RHOOB RecName: Full=Ribonuclease HII; Short=RNase HII gi|226244495|dbj|BAH54843.1| ribonuclease HII [Rhodococcus opacus B4] Length = 226 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 2/198 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREE 70 +E+ + + PVAG+DE GRGA AGP+VVAA +L P P ++DSKK++ + REE Sbjct: 18 TMESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLAPKPYPALARLDDSKKLTERTREE 77 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L+ IT A+ + ++ LP Sbjct: 78 LFPAITRLAVAWSVVSFPADEVDRMGVHVANIEGMRRAVAGLTTTPGYVLTDGFRVPGLP 137 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR+M + +P YGF H GY T H ++ Sbjct: 138 APSLPVIGGDAAAACIAAASVLAKVSRDRVMVAMDETHPGYGFAIHKGYNTPAHLAALEV 197 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP HR ++ + L Sbjct: 198 LGPCPEHRRSWSNVAALL 215 >gi|150025268|ref|YP_001296094.1| ribonuclease HII [Flavobacterium psychrophilum JIP02/86] gi|189043597|sp|A6GYW0|RNH2_FLAPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|149771809|emb|CAL43283.1| Ribonuclease HII [Flavobacterium psychrophilum JIP02/86] Length = 219 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 74/197 (37%), Positives = 103/197 (52%), Gaps = 21/197 (10%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL N +NDSK++S K RE+L I + AI S++ Sbjct: 13 AGTDEAGRGCLAGPVTAAAVILPENFESKILNDSKQLSEKTREQLKPIIEALAISFSVTH 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------------- 125 ID+ NI A+L A+ V L P + DG Sbjct: 73 LDPLIIDEINILNASLKAMQECVLQLNPTPLYIIADGNRPLLSKNSFKKCSGKIFTNREI 132 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + ++IKGDS LSIAAAS++AK RD M H+++P Y + + GYPT +H+ Sbjct: 133 EILQSIPSSSIIKGDSKYLSIAAASVLAKTYRDEYMNTIHEEFPMYNWKKNKGYPTKEHR 192 Query: 186 QVIKEKGPSCIHRLTFR 202 + I++ G + HR+TFR Sbjct: 193 EAIRKYGVTKYHRMTFR 209 >gi|262038337|ref|ZP_06011718.1| ribonuclease HII [Leptotrichia goodfellowii F0264] gi|261747641|gb|EEY35099.1| ribonuclease HII [Leptotrichia goodfellowii F0264] Length = 205 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 80/188 (42%), Positives = 110/188 (58%), Gaps = 3/188 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKI 75 + G+DE GRG LAGPVV AA+I+ INDSKK+S KKRE+L+E I Sbjct: 6 EFDNSYNKIIVGVDEAGRGPLAGPVVAAAVIIIQYFKELDEINDSKKLSEKKREQLFELI 65 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI--DGRSIPEDLPCQA 133 I+ A + ID+ NI AT A+ A+ ++ ++ DG + Sbjct: 66 KEKCIVGTGIADEKEIDEINILNATFSAMRKAINEVKEKSDFDIVLVDGNHKIRKYEGEQ 125 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 AVIKGDS SLSIAAASI+AKVTRD++M+ +++P+Y FD H GY T H++++ +KGP Sbjct: 126 EAVIKGDSKSLSIAAASIVAKVTRDKMMKEMSEEFPEYRFDKHKGYATKLHREILLKKGP 185 Query: 194 SCIHRLTF 201 HR TF Sbjct: 186 CKYHRKTF 193 >gi|296171466|ref|ZP_06852752.1| ribonuclease HII [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894152|gb|EFG73912.1| ribonuclease HII [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 242 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 76/200 (38%), Positives = 113/200 (56%), Gaps = 4/200 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE+ Sbjct: 19 TLESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPGRLESLAALDDSKKLTEGAREK 78 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A + +D+ +H A ++ + AV L + P L DG +P L Sbjct: 79 LFPLIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + VI GD+++ IAAAS++AKV+RDRLM +P YGF H GY T H + Sbjct: 138 PVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDADHPGYGFAEHKGYSTPAHSTALT 197 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 + GP HR +F +R +++ Sbjct: 198 QLGPCPEHRRSFINVRRVAL 217 >gi|261855823|ref|YP_003263106.1| ribonuclease H [Halothiobacillus neapolitanus c2] gi|261836292|gb|ACX96059.1| Ribonuclease H [Halothiobacillus neapolitanus c2] Length = 216 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 84/216 (38%), Positives = 122/216 (56%), Gaps = 18/216 (8%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 +P+ P FE++ + AG+DE GRG LAGPVV AAI+L P++ G+NDSKK++ Sbjct: 1 MPQLPLFEMQT----PGLIY-AGVDEAGRGPLAGPVVAAAIVLYPDDPIVGVNDSKKLTE 55 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGR 123 ++R +L+++IT A +I+ A+ ID NI +A+L A+ AV + GR Sbjct: 56 RQRVKLFDEITRRAQSFAIAEATVHEIDTINILQASLLAMRRAVMAVYDQMKTQGQTLGR 115 Query: 124 SIPEDLPCQ-----------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 + C A+I GD+ +IA+ASI+AKVTRDRLM K YP Y Sbjct: 116 IHVDGNRCPDLNDPDAGFMECHALIGGDARDAAIASASILAKVTRDRLMLDMDKLYPQYE 175 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 F H GYPTA+H+ ++ E G HR +F P+R + Sbjct: 176 FAKHKGYPTARHRDLLIEFGACPEHRSSFAPVRAIL 211 >gi|146299683|ref|YP_001194274.1| ribonuclease HII [Flavobacterium johnsoniae UW101] gi|189043596|sp|A5FIL7|RNH2_FLAJO RecName: Full=Ribonuclease HII; Short=RNase HII gi|146154101|gb|ABQ04955.1| Ribonuclease H [Flavobacterium johnsoniae UW101] Length = 221 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 99/207 (47%), Gaps = 21/207 (10%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + G DE GRG LAGPV AA+IL +NDSK++S K R L I Sbjct: 3 QLNYSGFTLETGTDEAGRGCLAGPVTAAAVILPSVFENNILNDSKQLSEKARALLKPIIE 62 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-------- 127 A S++ ID+ NI A++ + + L+ IP ++DG Sbjct: 63 EQALCFSVTHLFPDEIDEINILNASMKGMQECILKLKHIPEYIIVDGNRSLNAKLGLKNT 122 Query: 128 ------------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 ++IKGD+ LSIAAASI+AK RD M H+++P Y + Sbjct: 123 FGKQFSKEEIELLKSIPNQSIIKGDAKFLSIAAASILAKTYRDEYMDQIHEEFPMYNWKQ 182 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + GYPT +H++ IK+ G + HR++FR Sbjct: 183 NKGYPTKEHREAIKKYGTTKYHRMSFR 209 >gi|42527055|ref|NP_972153.1| ribonuclease HII [Treponema denticola ATCC 35405] gi|81412195|sp|Q73MG1|RNH2_TREDE RecName: Full=Ribonuclease HII; Short=RNase HII gi|41817479|gb|AAS12064.1| ribonuclease HII [Treponema denticola ATCC 35405] Length = 198 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 99/197 (50%), Gaps = 17/197 (8%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT--SSAIISIS 84 GIDE GRG LAGPV AA+IL + + DSKK++ KKREE+ + I + I +I Sbjct: 3 CGIDEAGRGPLAGPVTAAAVILPSSFDFSILKDSKKLTEKKREEVRKTIYADPNVIWAIG 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAV--------------ENLQVIPRSALIDGRSIPEDLP 130 AS+ ID+ NI +AT A+ A + + P + Sbjct: 63 WASNYEIDEINILQATFLAMERAYEGLYLKLQEFCKLNNDKFIEPDIIVDGNFIPNIKNC 122 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A++K D + AASI+AK RDR+M YP+YG++ H GY T KH + I+ Sbjct: 123 SSIKALVKADDSVYEVMAASILAKTARDRMMIRYSWIYPEYGYEKHKGYGTKKHIEAIRF 182 Query: 191 KGPSCIHRLTFRPLRNL 207 G S I R +F ++NL Sbjct: 183 NGYSPIQRRSF-FVKNL 198 >gi|73852875|ref|YP_294159.1| putative ribonuclease [Emiliania huxleyi virus 86] gi|72415591|emb|CAI65828.1| putative ribonuclease [Emiliania huxleyi virus 86] Length = 209 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 67/197 (34%), Positives = 94/197 (47%), Gaps = 4/197 (2%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEK 74 V G+DE GRG LAGPVV A + N I DSKK++ K+R E +E Sbjct: 12 NTFGSFGDNIVVGVDEAGRGCLAGPVVAGACFVPENEPIHPLIKDSKKMTEKQRMEAFEY 71 Query: 75 ITSSAIISIS--SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +T ++ I ID NI AT+ A+ + + D + Sbjct: 72 LTLNSNIKCYASFIEPYEIDDINILNATMKAMGNVINESGANLALVDGDKTPKMFVDTSE 131 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 IKGDS SI+ AS+IAKV+RD M K YP+YGF +H+GY T H I++ G Sbjct: 132 IQTFIKGDSRMYSISCASVIAKVSRDLYMEELSKTYPEYGFANHMGYGTQAHMAAIEKNG 191 Query: 193 PSCI-HRLTFRPLRNLS 208 P HR ++ P++ + Sbjct: 192 PIPFVHRYSYAPIKKFT 208 >gi|289766192|ref|ZP_06525570.1| ribonuclease HII [Fusobacterium sp. D11] gi|289717747|gb|EFD81759.1| ribonuclease HII [Fusobacterium sp. D11] Length = 213 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 80/201 (39%), Positives = 115/201 (57%), Gaps = 12/201 (5%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I Sbjct: 7 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSKKLTEKKREKLYDIIM 66 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVEN--------LQVIPRSALIDGRSIPED 128 + +++ ++ + IDK NI A A+ A+++ L+DG ++ Sbjct: 67 KNFYVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKDKKEYIVLVDGNLKIKE 126 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + ++KGD+ SLS+AAASIIAKVTRDR M+ YPDY F+ H GY T H + I Sbjct: 127 YSGKQLPIVKGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYGTKAHIEAI 186 Query: 189 KEKGPSC-IHRLTFRPLRNLS 208 K+KG +HR F LR ++ Sbjct: 187 KDKGAIEGVHRKVF--LRKIN 205 >gi|220905054|ref|YP_002480366.1| Ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869353|gb|ACL49688.1| Ribonuclease H [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 230 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 71/192 (36%), Positives = 99/192 (51%), Gaps = 14/192 (7%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AGIDE GRG LAGPVV A+IL P G+ DSK + ++R L +I SA + Sbjct: 27 AGIDEAGRGCLAGPVVAGAVILPPEYDLPGLADSKACTARQRGLLAPRIKKSALAWGLGI 86 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA-------------LIDGRSIPEDLPCQ 132 ID+ NI +AT +A+ AV +L++ P+ D Sbjct: 87 VWPDRIDRINILQATFEAMSMAVRHLRITPQILLVDGNKVIPEPALAPQWLRAHGDTLPL 146 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++ GD+ +I+AASI+AK RD LM K++P YGF H GY T +H + ++ G Sbjct: 147 QRAIVGGDAAEPAISAASILAKTCRDTLMTSLDKRWPGYGFAIHKGYGTKEHYEALRRLG 206 Query: 193 PSCIHRLTFRPL 204 P HRLTFR + Sbjct: 207 PCPQHRLTFRGV 218 >gi|237738859|ref|ZP_04569340.1| ribonuclease HII [Fusobacterium sp. 2_1_31] gi|229423962|gb|EEO39009.1| ribonuclease HII [Fusobacterium sp. 2_1_31] Length = 217 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 86/198 (43%), Positives = 119/198 (60%), Gaps = 9/198 (4%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I Sbjct: 7 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIIL 66 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP-----RSALIDGRSIPEDLPC 131 ++ +++ AS + IDK NI A A+ A+++L+ L+DG ++ Sbjct: 67 NNFNVAVGIASVEEIDKLNILNADFLAMRRALKDLEKFHEVDKDYIVLVDGNLKIKEYEG 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + V+KGD+ SLSIAAASIIAKVTRDR+M+ KYPDY F+ + GY T KH + IK K Sbjct: 127 KQLPVVKGDAKSLSIAAASIIAKVTRDRIMKDLGLKYPDYDFEKNKGYGTKKHVEAIKTK 186 Query: 192 GPSC-IHRLTFRPLRNLS 208 G +HR F LR + Sbjct: 187 GVLKNVHRKVF--LRKIL 202 >gi|325474109|gb|EGC77297.1| ribonuclease HII [Treponema denticola F0402] Length = 198 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 98/197 (49%), Gaps = 17/197 (8%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT--SSAIISIS 84 GIDE GRG LAGPV AA+IL + DSKK++ KKREE+ + I + + SI Sbjct: 3 CGIDEAGRGPLAGPVTAAAVILPSRFDFSILKDSKKLTEKKREEVRKTIYADPNVLWSIG 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAV--------------ENLQVIPRSALIDGRSIPEDLP 130 AS+ ID+ NI +AT A+ A + + P + Sbjct: 63 WASNYEIDEINILQATFLAMERAYEGLYLKLQEFCKLNNDKFIEPDIIVDGNFIPNIKNC 122 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A++K D + AASI+AK RDR+M YP+YG++ H GY T KH + I+ Sbjct: 123 SSIKALVKADDSVYEVMAASILAKTARDRMMIRYSWLYPEYGYEKHKGYGTKKHIEAIRF 182 Query: 191 KGPSCIHRLTFRPLRNL 207 G S I R +F ++NL Sbjct: 183 NGYSPIQRRSF-FVKNL 198 >gi|254776202|ref|ZP_05217718.1| ribonuclease HII [Mycobacterium avium subsp. avium ATCC 25291] Length = 239 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE Sbjct: 19 TLESALYRSGLGPVAGVDEVGRGACAGPLVVAACVLGPAKLESLAALDDSKKLTESVRER 78 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A + +D+ +H A ++ + AV L + P L DG +P L Sbjct: 79 LFPVIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD+++ IAAAS++AKV+RDRLM ++P YGF H GY T H + Sbjct: 138 AVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMDAEHPGYGFADHKGYSTPAHSAALA 197 Query: 190 EKGPSCIHRLTFRPLRN 206 GP HR +F +R Sbjct: 198 RLGPCPQHRHSFINVRR 214 >gi|281424964|ref|ZP_06255877.1| ribonuclease HII [Prevotella oris F0302] gi|281400808|gb|EFB31639.1| ribonuclease HII [Prevotella oris F0302] Length = 223 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 70/186 (37%), Positives = 100/186 (53%), Gaps = 11/186 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL P+ +NDSKK+S ++R L E+I A ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDYDNPALNDSKKLSVRQRYALREQIEHDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----------LPCQAFA 135 A+ + ID+ NI A+ A++ A++ L++ P + ++DG Sbjct: 73 ATPEEIDEINILHASFLAMHRALDQLKIRPEAVIVDGNHFDPYVVGKGLPNAGKQLPHTC 132 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGD +IAAASI+AK RD M K YP Y ++ + GYPT KH I E G Sbjct: 133 VIKGDGKYQNIAAASILAKTYRDDYMTEQAKLYPFYDWEKNKGYPTKKHYAGIAEHGICE 192 Query: 196 IHRLTF 201 +HR ++ Sbjct: 193 LHRRSY 198 >gi|296536589|ref|ZP_06898669.1| ribonuclease H [Roseomonas cervicalis ATCC 49957] gi|296263085|gb|EFH09630.1| ribonuclease H [Roseomonas cervicalis ATCC 49957] Length = 205 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 123/208 (59%), Gaps = 13/208 (6%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHK 66 P + LE VAG+DE GRG LAGPV+ AA++ P+ + ++DSKK+S + Sbjct: 2 PDYTLELAAG----GRVAGVDEAGRGPLAGPVMAAAVMFHGAPPDTLAMLLDDSKKLSAE 57 Query: 67 KREELYEKITSSA-----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 KRE + + ++A +I++AS I + NI +AT A++ AV L +P L+D Sbjct: 58 KREAAFAVLRAAARAGVLDYAIAAASAAEIGRLNILRATHLAMWRAVSRLPALPDLVLVD 117 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G + P C V+KGDS+SLSIAAASI+AKVTRDR M ++P YGF H GYPT Sbjct: 118 GNAAPRLP-CATRCVVKGDSLSLSIAAASILAKVTRDRAMIRLDGRWPGYGFARHAGYPT 176 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 A H+ +++ GP HR F P+ L++ Sbjct: 177 AAHRAALEKLGPCPHHRRGFAPVDQLAL 204 >gi|160915179|ref|ZP_02077392.1| hypothetical protein EUBDOL_01187 [Eubacterium dolichum DSM 3991] gi|158432978|gb|EDP11267.1| hypothetical protein EUBDOL_01187 [Eubacterium dolichum DSM 3991] Length = 208 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 71/197 (36%), Positives = 103/197 (52%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E E ++ + GIDE GRG +AGP+VVAA+ + I DSKK+S KKRE L+ Sbjct: 6 EYEKAWYKEGKQAIVGIDEAGRGPIAGPLVVAAVSFPDDYDDDEIYDSKKLSEKKRELLF 65 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 KI A I + ID NI++AT +A+ + Q ++ Sbjct: 66 RKIIKEAREYHILIVDTKTIDTENIYRATQNAMQRLCDEFQ--MIDGVLTDAMPLPFCKQ 123 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +++KGD S+SIAAASI+AKVTRD +M +YP YGF H GYPT H + + Sbjct: 124 DCISLVKGDQKSVSIAAASILAKVTRDHIMMAYDLQYPQYGFAKHKGYPTKVHLEALHRY 183 Query: 192 GPSC-IHRLTFRPLRNL 207 G ++R ++ P+ + Sbjct: 184 GVIDGLYRHSYGPVAKM 200 >gi|254519206|ref|ZP_05131262.1| ribonuclease HII [Clostridium sp. 7_2_43FAA] gi|226912955|gb|EEH98156.1| ribonuclease HII [Clostridium sp. 7_2_43FAA] Length = 270 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 82/191 (42%), Positives = 112/191 (58%), Gaps = 8/191 (4%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSS 78 +AG+DEVGRG LAGP+V A+ILD + + +NDSKK+S KKRE L E I Sbjct: 83 HTYIAGVDEVGRGPLAGPIVACAVILDLNVIEDELILWLNDSKKLSEKKREALAEIIKEK 142 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A IS +S+ ID+ I + A ++++ P L DG I + +VI Sbjct: 143 ALAYFISESSNDEIDEKGIAYCNNNIFLEACTSMKIKPELVLSDGYLIK-GINIPNKSVI 201 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD+ S SIAAASI+AKV RD LM+ K+YP Y F+ + GY T+KH + +KE G IH Sbjct: 202 KGDAKSASIAAASILAKVYRDNLMKDYSKEYPHYAFEENAGYGTSKHIEGLKEFGACKIH 261 Query: 198 RLTFRPLRNLS 208 R +F L+N+ Sbjct: 262 RRSF--LKNIL 270 >gi|159896757|ref|YP_001543004.1| ribonuclease H [Herpetosiphon aurantiacus ATCC 23779] gi|238687141|sp|A9B6H3|RNH2_HERA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|159889796|gb|ABX02876.1| Ribonuclease H [Herpetosiphon aurantiacus ATCC 23779] Length = 207 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 114/196 (58%), Gaps = 7/196 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKRE 69 E + VAG+DEVGRG AGPVV AA+ + + GINDSK +S + R+ Sbjct: 8 EQQLWRNGARIVAGVDEVGRGCWAGPVVAAAVSFPTHLLNDPVALAGINDSKTLSAEARQ 67 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + ++I A I + S ID I +AT A+ HAV +L +P +ID +PE Sbjct: 68 AMAQQIRHLASGIGLGVVSAHLIDLFGIAEATKWAMMHAVLSLPSLPDGLVIDWVKLPEL 127 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 ++ KGD+IS+S+AAASIIAKV RD LM ++ P YG+ +H GY TA+HQ+ + Sbjct: 128 PLL-QRSLPKGDAISISVAAASIIAKVYRDNLMHEYDQRDPRYGWAAHKGYGTAQHQRAL 186 Query: 189 KEKGPSCIHRLTFRPL 204 GPS +HR +F+PL Sbjct: 187 AAHGPSGLHRRSFKPL 202 >gi|227488611|ref|ZP_03918927.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51867] gi|227543214|ref|ZP_03973263.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51866] gi|227091505|gb|EEI26817.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51867] gi|227181023|gb|EEI61995.1| ribonuclease HII [Corynebacterium glucuronolyticum ATCC 51866] Length = 208 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 73/197 (37%), Positives = 104/197 (52%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 E + + + PVAG+DE GRGA AGP+ +AA IL IP ++DSKK++ +R Sbjct: 3 THEVALAKAGLGPVAGVDEAGRGACAGPITIAACILPDQFIPELELLDDSKKLTPARRAH 62 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I AI I S ID+ I A + + AV L V P ++ Sbjct: 63 LFPLIKRHAIAWHIVHISAHDIDERGITDANISGMRRAVGGLAVRPGY-VLTDAWWVPGF 121 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD+ + IAAAS++AK +RD++M +YP YGF H GY TAKH ++ Sbjct: 122 AQPSLPVIGGDATARCIAAASVLAKYSRDQIMIDYDAQYPGYGFAGHKGYGTAKHMDAVR 181 Query: 190 EKGPSCIHRLTFRPLRN 206 G S IHR ++ +RN Sbjct: 182 HHGASPIHRYSYSNVRN 198 >gi|217970566|ref|YP_002355800.1| ribonuclease HII [Thauera sp. MZ1T] gi|217507893|gb|ACK54904.1| Ribonuclease H [Thauera sp. MZ1T] Length = 203 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 78/186 (41%), Positives = 105/186 (56%), Gaps = 2/186 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 + G+DE GRG L GPVV AA+ILDP G+ DSKK+S RE L I + A + Sbjct: 14 SLICGVDEAGRGPLCGPVVAAAVILDPARPIEGLADSKKLSEAARERLAPLIRARALAWA 73 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 ++ AS + ID+ NI AT+ A+ AV L + P IDG P+ A A++KGD+ Sbjct: 74 VAEASVEEIDRLNILHATMLAMQRAVMALGIAPAEVRIDGNRCPKLP-YPARAIVKGDAT 132 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SI+AASI+AK RD MR ++P YG +H GYPTA H + G HR +F Sbjct: 133 EPSISAASILAKTARDAAMRELDAQWPQYGLAAHKGYPTAAHLAALAAHGVQAFHRRSFA 192 Query: 203 PLRNLS 208 P++ L Sbjct: 193 PVKKLL 198 >gi|224534867|ref|ZP_03675436.1| ribonuclease HII [Borrelia spielmanii A14S] gi|224513807|gb|EEF84132.1| ribonuclease HII [Borrelia spielmanii A14S] Length = 181 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ N ++DSKK+ +KRE L I ++ + Sbjct: 1 MICGIDEVGRGCIFGPILSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ +DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR +F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKHGVLSLHRKSFKL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|157737860|ref|YP_001490544.1| ribonuclease HII [Arcobacter butzleri RM4018] gi|189043562|sp|A8EVA1|RNH2_ARCB4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157699714|gb|ABV67874.1| ribonuclease HII [Arcobacter butzleri RM4018] Length = 192 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 101/180 (56%), Gaps = 4/180 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRG LAGP+VVA +IL + G+NDSK +S KKRE+L+++I + Sbjct: 1 MKNLCGIDEAGRGPLAGPLVVAGVILLED--IVGLNDSKVLSEKKREKLFDEIKEKSKYH 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I + + ID+ I +I +ENL+ S L+DG + Q IK D+ Sbjct: 59 IVFSDAKLIDEKGISFCLKSSILEIIENLKEFSNSFLMDGNTNFGIQILQKE--IKADAK 116 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AASI+AKV+RDR M YP Y F H GY T H + IKE G S IHR TF+ Sbjct: 117 YAQVSAASILAKVSRDRFMDEISPLYPKYDFHKHKGYGTKAHIEAIKEFGRSDIHRHTFK 176 >gi|289675278|ref|ZP_06496168.1| ribonuclease HII [Pseudomonas syringae pv. syringae FF5] Length = 198 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 81/174 (46%), Positives = 106/174 (60%), Gaps = 2/174 (1%) Query: 33 GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYI 91 GRG L G VV AA+ILDP G+NDSKK++ +RE+L+ +I A I+ A + I Sbjct: 2 GRGPLCGAVVTAAVILDPTRPILGLNDSKKLTEARREKLFVEIQEKALCWFIARAEVEEI 61 Query: 92 DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151 D+ NI AT+ A+ AVE L + PR ALIDG P+ + V+KGDS +IAAASI Sbjct: 62 DQLNILHATMLAMQRAVEGLSITPRLALIDGNRCPQLS-VPSAPVVKGDSKVPAIAAASI 120 Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 +AKV+RDR M YP YG H GYPT H + + GP+ IHR +F P+R Sbjct: 121 LAKVSRDREMAAFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPVR 174 >gi|291320659|ref|YP_003515924.1| ribonuclease H II [Mycoplasma agalactiae] gi|290752995|emb|CBH40971.1| Ribonuclease H II [Mycoplasma agalactiae] Length = 207 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 1/195 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + +AG+DE GRG AGP+VVA++I+ N INDSKK+S K+R+ L Sbjct: 2 LDYELKNF-TDYKLIAGVDEAGRGCCAGPLVVASVIMPKNYNNERINDSKKLSAKQRDIL 60 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +++I + I K + + +I ++L Sbjct: 61 FDEILNVCIDYHIVTLPSSYVDKYNPKKSSKNGMKICIDSLNTKPDLVITDFEKIDELAI 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGDSIS ++A ASI+AKVTRDR M KY +Y F+ H GY T +H + I + Sbjct: 121 KQVNLVKGDSISFNVACASILAKVTRDRFMIKIANKYKEYEFEKHKGYCTKRHTESIIQY 180 Query: 192 GPSCIHRLTFRPLRN 206 G + HRLT++ ++ Sbjct: 181 GATPEHRLTYKNVKK 195 >gi|268611246|ref|ZP_06144973.1| ribonuclease HII [Ruminococcus flavefaciens FD-1] Length = 208 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 89/198 (44%), Positives = 125/198 (63%), Gaps = 5/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F+ ++ + K+ + GIDE GRG LAG V AA+IL+ + + +NDSKKIS K+RE L Sbjct: 11 FDYDSEL-RKDYPVIVGIDEAGRGPLAGDVYAAAVILNDDTLINYLNDSKKISEKRRELL 69 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 Y+++ A SI++AS + ID+ NI +AT A+ A E L V L+DG +P D+ Sbjct: 70 YDEVIEKAEKYSIATASVKEIDELNILQATFLAMKRAYEGLGVRADLVLVDGNKLP-DID 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VIKGD+ S SI+AASI+AKV RDR MR +KYP Y FD H GY T H + ++E Sbjct: 129 AEMRYVIKGDATSASISAASILAKVARDRYMRDLAEKYPQYEFDRHKGYGTKLHYEKLEE 188 Query: 191 KGPSCIHRLTFRPLRNLS 208 G S +HR +F L+ L+ Sbjct: 189 FGISEVHRRSF--LKKLT 204 >gi|258647683|ref|ZP_05735152.1| ribonuclease HII [Prevotella tannerae ATCC 51259] gi|260852512|gb|EEX72381.1| ribonuclease HII [Prevotella tannerae ATCC 51259] Length = 203 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 108/180 (60%), Gaps = 1/180 (0%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 P AG DE GRG LAG V AA++L +NDSK++S +R L E+I A+ S Sbjct: 10 RPEAGCDEAGRGCLAGSVYAAAVVLPEGYANARLNDSKQLSPTRRYHLREEILRDAVAWS 69 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + S ID+ NI A++ A++ A++ L+V P L+DG ++KGD+ Sbjct: 70 VGTVSASEIDEINILNASILAMHRALDGLKVRPAFILVDGNRFKPYGSTPFATIVKGDAK 129 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 LSIAAASI+AK RD MR H++YP YG+D + GYPT +H++ I++ G + HR +FR Sbjct: 130 YLSIAAASILAKTFRDDEMRRLHEQYPWYGWDHNAGYPTREHRRGIEQHGLTPYHRRSFR 189 >gi|317504209|ref|ZP_07962202.1| ribonuclease HII [Prevotella salivae DSM 15606] gi|315664660|gb|EFV04334.1| ribonuclease HII [Prevotella salivae DSM 15606] Length = 220 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 72/193 (37%), Positives = 107/193 (55%), Gaps = 11/193 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG VV AA+IL + + +NDSKK++ K+R L E+I A ++ Sbjct: 13 AGCDEAGRGCLAGNVVAAAVILPTDYVNPLLNDSKKLTAKQRYALREQIEHEALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----------LPCQAFA 135 A+ + ID NI A+ A++ A++ L++ P + ++DG Sbjct: 73 ATPEEIDNINILHASFLAMHRALDQLKLRPEAVIVDGNHFDPYVIGKGLPDEGKILPHTC 132 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++KGD LSIAAASI+AK RD M +++P YG++ + GYPT H Q I++ G Sbjct: 133 IVKGDGKYLSIAAASILAKTYRDDYMTEQAERFPFYGWEKNKGYPTKTHYQGIEKHGLCA 192 Query: 196 IHRLTFRPLRNLS 208 +HR +F NLS Sbjct: 193 LHRKSFNTHPNLS 205 >gi|289208655|ref|YP_003460721.1| ribonuclease H [Thioalkalivibrio sp. K90mix] gi|288944286|gb|ADC71985.1| Ribonuclease H [Thioalkalivibrio sp. K90mix] Length = 226 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 85/183 (46%), Positives = 110/183 (60%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 VAG+DEVGRG LAGPVV AA+IL + G+ DSKK+S +R+ L +I A+ ++ Sbjct: 35 WVAGVDEVGRGPLAGPVVAAAVILPESFAAPGLTDSKKLSAGRRQALDVEIRERAVAWAL 94 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID NIH+ATL A+ AV L P L+DGR PE A A++ GD Sbjct: 95 GRAEAAEIDALNIHRATLLAMQRAVAALSQAPDHLLVDGRFTPEGPW-SAEAIVGGDGSV 153 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AAS+IAKV RD M H++YPDYGFD H GYPTA H+ + GP HR +F P Sbjct: 154 AAISAASVIAKVARDAEMTALHERYPDYGFDRHAGYPTAYHRDALARLGPCVEHRRSFGP 213 Query: 204 LRN 206 + Sbjct: 214 VAR 216 >gi|154148444|ref|YP_001406026.1| ribonuclease HII [Campylobacter hominis ATCC BAA-381] gi|189043574|sp|A7I0I5|RNH2_CAMHC RecName: Full=Ribonuclease HII; Short=RNase HII gi|153804453|gb|ABS51460.1| ribonuclease HII [Campylobacter hominis ATCC BAA-381] Length = 185 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 64/176 (36%), Positives = 93/176 (52%), Gaps = 4/176 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+ +A IL+ G+ DSKK+S K+RE LYE+I ++ I Sbjct: 3 ICGIDEAGRGPLAGPLHIAGCILNK--QIEGLKDSKKLSEKRREILYEEIIKNSTYKIVK 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S IDK + K + V+ + DG S + ++K D Sbjct: 61 FSAAQIDKFGLSKCLKLGLNELVDFFAPFEVKIIFDGNSKFGAEGFE--TMVKADDKIKE 118 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AASI+AKV+RDR+MR K+P Y F + GY + H + I++ G IHR +F Sbjct: 119 VSAASILAKVSRDRVMRNFDIKFPFYDFAKNKGYGSKAHIEAIQKYGYCEIHRKSF 174 >gi|296394368|ref|YP_003659252.1| ribonuclease H [Segniliparus rotundus DSM 44985] gi|296181515|gb|ADG98421.1| Ribonuclease H [Segniliparus rotundus DSM 44985] Length = 221 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 106/195 (54%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREE 70 EA +R VAG+DE GRGA AGP+VVA+ +L P G++DSK+++ +KRE Sbjct: 23 AFEAALRRAGYTSVAGVDEAGRGACAGPLVVASCVLKPRSARALPGLDDSKRLTAQKREW 82 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L +I + + +D +H+A L+ + AV L P L+DG +P + Sbjct: 83 LEPRIREQSLGWHVVVMPPAEVDAMGVHQANLEGMRRAVAGLAQPPDYVLMDGFDVP-GM 141 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P A V+ GD + IAAAS++AKV RDR+M + YGF +H GY TA H + Sbjct: 142 PSPAQRVVGGDRLVACIAAASVLAKVARDRIMVALDQSRSGYGFAAHKGYCTAAHMSALA 201 Query: 190 EKGPSCIHRLTFRPL 204 + GP HR ++ P+ Sbjct: 202 QFGPCEHHRYSYAPV 216 >gi|292670872|ref|ZP_06604298.1| ribonuclease HII [Selenomonas noxia ATCC 43541] gi|292647493|gb|EFF65465.1| ribonuclease HII [Selenomonas noxia ATCC 43541] Length = 251 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 83/198 (41%), Positives = 111/198 (56%), Gaps = 2/198 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E E VAG+DE GRG LAGPV VAA++L +NDSKK+SH REEL Sbjct: 52 YTYERAAIEAGHLIVAGVDEAGRGPLAGPVAVAAVVLPMECHLSHLNDSKKLSHAVREEL 111 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + +IT A IS + ID+ NI +AT +Y A+ L ++ L Sbjct: 112 FAQITEQAFSYHISLIDAETIDRMNILQATRMGMYEAIAAL-TPAPDEVLIDAVELPKLS 170 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++IKGD+ S SIAAASI+AKVTRD LM +YP YGF H GY T +H I++ Sbjct: 171 MSSKSIIKGDAKSASIAAASILAKVTRDHLMEQYDTEYPHYGFAKHKGYGTQEHIDAIRK 230 Query: 191 KGPSCIHRLTFRPLRNLS 208 G IHR +F P+R++ Sbjct: 231 YGVCPIHRKSFEPIRSML 248 >gi|319786395|ref|YP_004145870.1| ribonuclease H [Pseudoxanthomonas suwonensis 11-1] gi|317464907|gb|ADV26639.1| Ribonuclease H [Pseudoxanthomonas suwonensis 11-1] Length = 233 Score = 164 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 84/183 (45%), Positives = 112/183 (61%), Gaps = 1/183 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DE GRG LAGPV VAA++LDP G++DSKK+SH +RE+LY +I A + Sbjct: 30 RVAGVDEAGRGPLAGPVAVAAVVLDPRRRIRGLDDSKKLSHAQREDLYPRIVERALAWHV 89 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ID+ NI +ATL+ + V L + A IDG +P LPC A A+I GD++ Sbjct: 90 ELVPVDEIDRLNILQATLEGMRRCVLALGEHAQLARIDGNMLPRSLPCMAEAIIGGDALE 149 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I AASI+AKV+RDRLM H+++P YGF H GY T H + GP HR +F P Sbjct: 150 PAIMAASILAKVSRDRLMCQLHEEFPVYGFAEHKGYATPAHLAALASHGPCVHHRRSFAP 209 Query: 204 LRN 206 +R Sbjct: 210 VRQ 212 >gi|325680872|ref|ZP_08160410.1| ribonuclease HII [Ruminococcus albus 8] gi|324107652|gb|EGC01930.1| ribonuclease HII [Ruminococcus albus 8] Length = 204 Score = 164 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 85/184 (46%), Positives = 113/184 (61%), Gaps = 2/184 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 V G DE GRG LAG V AA++ D + + GINDSKK++ KKREEL+E I Sbjct: 10 YRDKYDVVCGCDEAGRGPLAGDVFAAAVVFDKDTVIEGINDSKKLTAKKREELFEVIVEK 69 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A SI A+ + I+K NI + A+ AVE++++ P LIDG +L C A AV+ Sbjct: 70 ALDFSIQCATVEEIEKFNILNCAMLAMKRAVESMKIKPDVCLIDGNK-TPELECDAIAVV 128 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD+ S +IAAASI+AKV RDR M KK+P++ F+ H GY T H Q+I + G S IH Sbjct: 129 KGDAQSQAIAAASILAKVARDRYMLEMAKKFPEWQFEKHKGYGTKLHYQMIDKYGESPIH 188 Query: 198 RLTF 201 R +F Sbjct: 189 RPSF 192 >gi|240170577|ref|ZP_04749236.1| ribonuclease HII [Mycobacterium kansasii ATCC 12478] Length = 239 Score = 164 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 68/196 (34%), Positives = 95/196 (48%), Gaps = 2/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK++ K RE+ Sbjct: 19 TLESALHRSGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLTEKAREK 78 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L+ I A+ + ++ LP Sbjct: 79 LFPLICRYALAYHVVFIPSVEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVPGLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDRLM +YP YGF H GY T H + Sbjct: 139 MPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDAQYPGYGFAEHKGYSTPAHTLALAR 198 Query: 191 KGPSCIHRLTFRPLRN 206 GP HR +F +R Sbjct: 199 LGPCPEHRYSFINVRR 214 >gi|183981819|ref|YP_001850110.1| ribonuclease HII protein RnhB [Mycobacterium marinum M] gi|238689245|sp|B2HJL9|RNH2_MYCMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|183175145|gb|ACC40255.1| ribonuclease HII protein RnhB [Mycobacterium marinum M] Length = 239 Score = 164 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 110/197 (55%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ ++ + PVAG+DEVGRGA AGP+VVAA L PN ++DSKK++ K RE+ Sbjct: 19 TLESALQRSGLGPVAGVDEVGRGACAGPLVVAACALGPNRYESLAALDDSKKLTEKTREK 78 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A + +D+ +H A ++ + AV L V P L DG +P L Sbjct: 79 LFPLICRYALAYHVVFIPSVEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD+ + IAAAS++AKV+RDRLM +YP YGF H GY T H + Sbjct: 138 SVPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDTQYPGYGFAEHKGYSTRAHTLALT 197 Query: 190 EKGPSCIHRLTFRPLRN 206 + GP HR +F +R Sbjct: 198 QLGPCPEHRRSFINVRR 214 >gi|218961310|ref|YP_001741085.1| ribonuclease HII [Candidatus Cloacamonas acidaminovorans] gi|167729967|emb|CAO80879.1| ribonuclease HII [Candidatus Cloacamonas acidaminovorans] Length = 204 Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 96/177 (54%), Positives = 117/177 (66%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AGIDE GRGALAGPVV AA+IL+ N + GINDSK ++ KKREELY +I SA SI Sbjct: 21 AGIDEAGRGALAGPVVTAAVILNYNTLIEGINDSKLLTPKKREELYWQIVESAIDYSIVE 80 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S YID++NI +ATL A L+ PR LIDGR I +L A A+IKGD + S Sbjct: 81 ISPAYIDRYNILRATLLGFKKAFFQLKSKPRYCLIDGRDIHSELKPYAKAIIKGDQLYAS 140 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AKV RD+LM YP+YGF S+ GY TA H ++I G S IHR +F+ Sbjct: 141 IAAASILAKVHRDKLMLAYDDIYPEYGFASNKGYGTAYHAKMICSYGLSPIHRKSFK 197 >gi|118617628|ref|YP_905960.1| ribonuclease HII [Mycobacterium ulcerans Agy99] gi|166226630|sp|A0PQ70|RNH2_MYCUA RecName: Full=Ribonuclease HII; Short=RNase HII gi|118569738|gb|ABL04489.1| ribonuclease HII protein RnhB [Mycobacterium ulcerans Agy99] Length = 239 Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 110/197 (55%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ ++ + PVAG+DEVGRGA AGP+VVAA L PN ++DSKK++ K RE+ Sbjct: 19 TLESALQRSGLGPVAGVDEVGRGACAGPLVVAACALGPNRYESLAALDDSKKLTEKTREK 78 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A + +D+ +H A ++ + AV L V P L DG +P L Sbjct: 79 LFPLICRYALAYHVVFIPSVEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD+ + IAAAS++AKV+RDRLM +YP YGF H GY T H + Sbjct: 138 SVPSLPVIGGDAAAACIAAASVLAKVSRDRLMVAMDTQYPGYGFAEHKGYSTRAHTLALT 197 Query: 190 EKGPSCIHRLTFRPLRN 206 + GP HR +F +R Sbjct: 198 QLGPCPEHRRSFINVRR 214 >gi|167563174|ref|ZP_02356090.1| ribonuclease HII [Burkholderia oklahomensis EO147] gi|167570357|ref|ZP_02363231.1| ribonuclease HII [Burkholderia oklahomensis C6786] Length = 214 Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 122/198 (61%), Gaps = 7/198 (3%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 +P + + V G+DE GRG LAGPVV AA++LDP G++DSK +S KKR Sbjct: 16 QPALDFD-----APGEIVCGVDEAGRGPLAGPVVAAAVVLDPARPIEGLDDSKALSAKKR 70 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L+++I + + ++SAS + ID NI AT+ A+ AVE L + P A IDG P Sbjct: 71 ERLFDEIVAHSLAYCVASASVEEIDTLNILHATMLAMKRAVEGLAMRPTLAKIDGNRCPT 130 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ A++ GD++ SI+AASI+AKVTRDR++ H+ +P YGF+ H GY T +H Sbjct: 131 LS-IRSVAIVGGDALVPSISAASILAKVTRDRMLVDLHQLFPMYGFNVHAGYGTPRHLAA 189 Query: 188 IKEKGPSCIHRLTFRPLR 205 ++E GP HR +F P+R Sbjct: 190 LREHGPCEHHRRSFAPVR 207 >gi|289427787|ref|ZP_06429498.1| ribonuclease HII [Propionibacterium acnes J165] gi|289159051|gb|EFD07244.1| ribonuclease HII [Propionibacterium acnes J165] Length = 217 Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 103/196 (52%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 16 HERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREAL 75 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S D+ + +A + + AV L V P L DG + L Sbjct: 76 FNVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGF-PVDGLT 134 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 135 VPDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKE 194 Query: 191 KGPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 195 LGPSRQHRMSYANVRR 210 >gi|47459459|ref|YP_016321.1| ribonuclease HII [Mycoplasma mobile 163K] gi|47458789|gb|AAT28110.1| ribonuclease HII [Mycoplasma mobile 163K] Length = 205 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ + + + DEVGRG+LAGP+VVA + L PN + DSKK++ ++REEL Sbjct: 11 YDFDKRFYNE-FESIIACDEVGRGSLAGPIVVACVNLKPNFFNEKVRDSKKLNPRQREEL 69 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + + + ID N +AT A + + ++ Sbjct: 70 SILIKENGSFHFCYINSKEIDLLNPLEATKKATTSCLNKFEEKGSQIILLDYLSNFSYSK 129 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-HKKYPDYGFDSHVGYPTAKHQQVIKE 190 + + KGD+ S SIA+ASI+AKV RD M + ++ Y F + GY T H + IK Sbjct: 130 KFINIKKGDNTSFSIASASILAKVERDNFMINLNNDEFDIYDFFKNKGYGTKNHLEAIKI 189 Query: 191 KGPSCIHRLTFRPLRN 206 GPS IHRL+++PL+ Sbjct: 190 FGPSKIHRLSYKPLKK 205 >gi|255530318|ref|YP_003090690.1| ribonuclease HII [Pedobacter heparinus DSM 2366] gi|255343302|gb|ACU02628.1| Ribonuclease H [Pedobacter heparinus DSM 2366] Length = 203 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 72/176 (40%), Positives = 100/176 (56%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ I +NDSK+++H++R+ L I AI +++ Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPPDFIAGELNDSKQLNHQQRKRLRIIIEKEAIAWAVAE 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + ID+ NI A+ A++ A+E L V P+ IDG + ++KGD L+ Sbjct: 73 VDNIEIDQINILNASFLAMHRAIEKLLVKPQYLSIDGNRFKKYPDIPHACIVKGDGKYLN 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M +YP Y + + GYPT H+ E G S HR TF Sbjct: 133 IAAASILAKTHRDEFMERISDEYPHYQWHQNKGYPTVVHRSAALEHGLSPYHRKTF 188 >gi|295130970|ref|YP_003581633.1| ribonuclease HII [Propionibacterium acnes SK137] gi|291377067|gb|ADE00922.1| ribonuclease HII [Propionibacterium acnes SK137] Length = 217 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 103/196 (52%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 16 HERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREAL 75 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S D+ + +A + + AV L V P L DG + L Sbjct: 76 FNVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGF-PVDGLT 134 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 135 VPDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKE 194 Query: 191 KGPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 195 LGPSRQHRMSYANVRR 210 >gi|110633060|ref|YP_673268.1| ribonuclease HII [Mesorhizobium sp. BNC1] gi|110284044|gb|ABG62103.1| RNase HII [Chelativorans sp. BNC1] Length = 258 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P RP F +E + + + PVAG+DE GRG LAGPVV AA++LDP+ IP G++DSK+++ Sbjct: 18 DLPVRPDFTIEWKIMREGLAPVAGLDEAGRGPLAGPVVAAAVVLDPDRIPEGLDDSKRLT 77 Query: 65 HKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + RE L ++I +A +S++S ID+ NI KA+L+A+ A++ L V P AL DGR Sbjct: 78 AEARERLVQEIFEVAAAVSVASLCAASIDESNILKASLEAMRRALDGLCVRPAYALADGR 137 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP LPC AV+KGD S SIAAAS++AKV RDR+M P YGF SHVGY T + Sbjct: 138 DIPPGLPCPCRAVVKGDQRSQSIAAASMVAKVVRDRMMVRTGTLMPHYGFHSHVGYATER 197 Query: 184 HQQVIKEKGP-SCIHRLTFRPLR 205 H++ I GP + +HR++F P + Sbjct: 198 HREAITAYGPVTRLHRMSFSPFK 220 >gi|283481616|emb|CAZ69732.1| putative ribonuclease [Emiliania huxleyi virus 99B1] Length = 209 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 4/197 (2%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEK 74 V G+DE GRG LAGPVV A + N I DSKK++ K+R E +E Sbjct: 12 NTFGSFGDNIVVGVDEAGRGCLAGPVVAGACFVPENEPIHPLIKDSKKMTEKQRMEAFEY 71 Query: 75 ITSSAIISIS--SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +T ++ I ID NI KAT+ A+ + + D + Sbjct: 72 LTLNSNIKCYASFIEPYEIDDINILKATMKAMGNVINESGANLALVDGDKTPKMFVDTSE 131 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 IKGDS SI+ AS+IAKV+RD M K YP+YGF +H+GY T H I++ G Sbjct: 132 IQTFIKGDSRMYSISCASVIAKVSRDLYMEELSKTYPEYGFSNHMGYGTQAHMAAIEKNG 191 Query: 193 PSCI-HRLTFRPLRNLS 208 P HR ++ P++ + Sbjct: 192 PIPFVHRYSYAPIKKFT 208 >gi|189043695|sp|Q11KH2|RNH2_MESSB RecName: Full=Ribonuclease HII; Short=RNase HII Length = 253 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P RP F +E + + + PVAG+DE GRG LAGPVV AA++LDP+ IP G++DSK+++ Sbjct: 13 DLPVRPDFTIEWKIMREGLAPVAGLDEAGRGPLAGPVVAAAVVLDPDRIPEGLDDSKRLT 72 Query: 65 HKKREELYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + RE L ++I +A +S++S ID+ NI KA+L+A+ A++ L V P AL DGR Sbjct: 73 AEARERLVQEIFEVAAAVSVASLCAASIDESNILKASLEAMRRALDGLCVRPAYALADGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 IP LPC AV+KGD S SIAAAS++AKV RDR+M P YGF SHVGY T + Sbjct: 133 DIPPGLPCPCRAVVKGDQRSQSIAAASMVAKVVRDRMMVRTGTLMPHYGFHSHVGYATER 192 Query: 184 HQQVIKEKGP-SCIHRLTFRPLR 205 H++ I GP + +HR++F P + Sbjct: 193 HREAITAYGPVTRLHRMSFSPFK 215 >gi|157825403|ref|YP_001493123.1| ribonuclease HII [Rickettsia akari str. Hartford] gi|166226646|sp|A8GMJ0|RNH2_RICAH RecName: Full=Ribonuclease HII; Short=RNase HII gi|157799361|gb|ABV74615.1| ribonuclease HII [Rickettsia akari str. Hartford] Length = 193 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 89/191 (46%), Positives = 117/191 (61%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKR L Sbjct: 6 LHFEKKYHN---YIVAGIDEAGRGPLAGPVVASAVIIDNANIIHGIKDSKKLSKKKRALL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + +++ +H IDK NI +AT A A NL V P L+DG D Sbjct: 63 YEQITSNYVWAVAIITHTEIDKINILEATKKACSIAAANLNVKPEIVLVDGNMQFSDE-- 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + +++ GD++SLSIAAASIIAKVTRDRLM K+P Y + + GY T +H + I + Sbjct: 121 RFISIVNGDNLSLSIAAASIIAKVTRDRLMLELSAKFPQYLWHKNSGYGTKEHLEAINKY 180 Query: 192 GPSCIHRLTFR 202 G S HR +F+ Sbjct: 181 GLSPYHRKSFK 191 >gi|314923942|gb|EFS87773.1| ribonuclease HII [Propionibacterium acnes HL001PA1] gi|314966113|gb|EFT10212.1| ribonuclease HII [Propionibacterium acnes HL082PA2] gi|315094908|gb|EFT66884.1| ribonuclease HII [Propionibacterium acnes HL060PA1] gi|315104180|gb|EFT76156.1| ribonuclease HII [Propionibacterium acnes HL050PA2] gi|327328010|gb|EGE69779.1| ribonuclease HII [Propionibacterium acnes HL103PA1] Length = 204 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 103/196 (52%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 3 HERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREAL 62 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S D+ + +A + + AV L V P L DG + L Sbjct: 63 FNVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGF-PVDGLT 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 122 VPDLGMWKGDSVCACVAAASIVAKVARDRIMIALDAEIPGYDFAVHKGYATALHQRRLKE 181 Query: 191 KGPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 182 LGPSRQHRMSYANVRR 197 >gi|313819655|gb|EFS57369.1| ribonuclease HII [Propionibacterium acnes HL046PA2] Length = 213 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 103/196 (52%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 12 HERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREAL 71 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S D+ + +A + + AV L V P L DG + L Sbjct: 72 FNVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGF-PVDGLT 130 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 131 VPDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKE 190 Query: 191 KGPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 191 LGPSRQHRMSYANVRR 206 >gi|262067279|ref|ZP_06026891.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693] gi|291379005|gb|EFE86523.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693] Length = 217 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 86/198 (43%), Positives = 119/198 (60%), Gaps = 9/198 (4%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKIT 76 + + V G+DE GRG LAGPVV AA+IL + INDSKK++ KKRE+LY+ I Sbjct: 7 LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKQYSEELDEINDSKKLTEKKREKLYDIIL 66 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP-----RSALIDGRSIPEDLPC 131 ++ +++ AS + IDK NI A A+ A+++L+ L+DG ++ Sbjct: 67 NNFNVAVGIASVEEIDKLNILNADFLAMRRALKDLEKFHEANKDYIVLVDGNLKIKEYEG 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + V+KGD+ SLSIAAASIIAKVTRDR+M+ KYPDY F+ + GY T KH + IK K Sbjct: 127 KQLPVVKGDAKSLSIAAASIIAKVTRDRIMKGLGLKYPDYDFEKNKGYGTKKHVEAIKTK 186 Query: 192 GPSC-IHRLTFRPLRNLS 208 G +HR F LR + Sbjct: 187 GVLKNVHRKVF--LRKIL 202 >gi|313811659|gb|EFS49373.1| ribonuclease HII [Propionibacterium acnes HL083PA1] Length = 204 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 103/196 (52%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 3 HERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREAL 62 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S D+ + +A + + AV L V P L DG + L Sbjct: 63 FNVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGF-QVDGLT 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 122 VPDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKE 181 Query: 191 KGPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 182 LGPSRQHRMSYANVRR 197 >gi|119485462|ref|ZP_01619790.1| ribonuclease HII [Lyngbya sp. PCC 8106] gi|119457218|gb|EAW38344.1| ribonuclease HII [Lyngbya sp. PCC 8106] Length = 199 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 83/191 (43%), Positives = 111/191 (58%), Gaps = 6/191 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 +AGIDEVGRGAL GPVV A+IL I G+ DSK++ R+ L ++I + A Sbjct: 3 QLIAGIDEVGRGALFGPVVAGAVILSDEAITALTAAGVRDSKQLRPPMRKRLAQEIRAMA 62 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 ++ AS Q ID+ NI +ATL A+ ++ L+ P LIDG DL VIK Sbjct: 63 LSCQVAVASVQEIDRLNILQATLLAMKRSILKLKPPPDLCLIDGNQPIRDLLIPQQTVIK 122 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD S IAAASI+AKV RD L+ KY +Y ++ GY T KH+Q ++ GPS HR Sbjct: 123 GDQTSTVIAAASIVAKVWRDELIVRLADKYREYDLSNNKGYGTKKHRQALQRYGPSRQHR 182 Query: 199 LTFRPLRNLSV 209 L+F P + LS+ Sbjct: 183 LSFAPCQ-LSL 192 >gi|108798940|ref|YP_639137.1| ribonuclease HII [Mycobacterium sp. MCS] gi|119868055|ref|YP_938007.1| ribonuclease HII [Mycobacterium sp. KMS] gi|123070330|sp|Q1BAK3|RNH2_MYCSS RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226628|sp|A1UEF9|RNH2_MYCSK RecName: Full=Ribonuclease HII; Short=RNase HII gi|108769359|gb|ABG08081.1| RNase HII [Mycobacterium sp. MCS] gi|119694144|gb|ABL91217.1| RNase HII [Mycobacterium sp. KMS] Length = 239 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 80/198 (40%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK+ K+RE Sbjct: 19 TLESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERER 78 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A + + +D+ +H A ++ + AV L V P L DG +P L Sbjct: 79 LFPVIRRYALAYHVVFIPSEEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + V+ GD+ + IAAAS++AKV+RDRLM +++P YGF H GY T H + Sbjct: 138 PMPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEREHPGYGFAEHKGYSTPAHTAALA 197 Query: 190 EKGPSCIHRLTFRPLRNL 207 E GP HR +F +R L Sbjct: 198 ELGPCAQHRYSFINVRRL 215 >gi|269125835|ref|YP_003299205.1| Ribonuclease H [Thermomonospora curvata DSM 43183] gi|268310793|gb|ACY97167.1| Ribonuclease H [Thermomonospora curvata DSM 43183] Length = 250 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 73/211 (34%), Positives = 112/211 (53%), Gaps = 10/211 (4%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---------GI 57 P R E+E +RE +AG+DEVGRGA AGPVVV A I P P + Sbjct: 18 PRRAGDEIERRLREAGAVRIAGVDEVGRGAWAGPVVVCAAIAGPGAPPSLPGRGGGTVHL 77 Query: 58 NDSKKISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK ++ +RE E + + + +A ID+ + +A A A++ L P Sbjct: 78 TDSKLLTRAQREAFAEILPAWLEAHALGAAEPAEIDRVGMTEALRRAAVRALQALPHRPD 137 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + ++DG+ P + + D S+S+AAAS++AKV RDRLM +++P YGF Sbjct: 138 AVILDGKHDVPGAPWRVHCQVGADRRSVSVAAASVLAKVHRDRLMARLEEEFPGYGFADS 197 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GYP+ H++ ++E GP+ HRL++ L +L Sbjct: 198 AGYPSPAHRRALQEHGPTPHHRLSWSYLDDL 228 >gi|302874784|ref|YP_003843417.1| Ribonuclease H [Clostridium cellulovorans 743B] gi|307690600|ref|ZP_07633046.1| ribonuclease HII [Clostridium cellulovorans 743B] gi|302577641|gb|ADL51653.1| Ribonuclease H [Clostridium cellulovorans 743B] Length = 261 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 85/197 (43%), Positives = 124/197 (62%), Gaps = 10/197 (5%) Query: 19 REKNMWPV-AGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELY 72 R++ ++ + AG+DEVGRG LAGP+V AA++LD N+ GI DSKK+S KKREEL Sbjct: 67 RDQGVYAITAGVDEVGRGPLAGPIVAAAVVLDLYDLKDENLILGIKDSKKLSAKKREELD 126 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A+ +I A + ID+ I + A++ L+V P + DG + C Sbjct: 127 KLIKERAVSYAIGIADNNEIDEKGIAWCNNEVFKRAIKGLKVRPDLVISDGF-PVSGIEC 185 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + KGD++S+SIAAASIIAKV RD +M+ HKKYP+Y F+++VGY T +H + IK Sbjct: 186 ENKYYYKGDNLSISIAAASIIAKVFRDEIMQDYHKKYPNYNFEANVGYGTEEHVRAIKMF 245 Query: 192 GPSCIHRLTFRPLRNLS 208 G + IHR++F L+N+ Sbjct: 246 GITPIHRMSF--LKNIL 260 >gi|312890316|ref|ZP_07749853.1| RNase HII [Mucilaginibacter paludis DSM 18603] gi|311297086|gb|EFQ74218.1| RNase HII [Mucilaginibacter paludis DSM 18603] Length = 198 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 105/177 (59%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAGPV AA+IL P+ +NDSK+I + R EL +I A+ +++S Sbjct: 13 AGCDEAGRGCLAGPVFAAAVILPPDFEHGLLNDSKQIDEQTRYELRAEIEQKAVAFAVAS 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 ++ ID+ NI A+ A++ A++ L + P +IDG + +I+GD S Sbjct: 73 VDNEEIDEINILNASFLAMHRAIDQLHIAPELLIIDGNRFNKYRAIPHHCIIQGDGKYFS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AK RD M+ ++P+Y + ++ GYPT KH+ ++ E G + HR TFR Sbjct: 133 IAAASILAKTYRDDYMKKIALEHPEYDWHTNKGYPTIKHRNMVVELGYTPYHRRTFR 189 >gi|34763383|ref|ZP_00144335.1| Ribonuclease HII [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|294786017|ref|ZP_06751304.1| ribonuclease HII [Fusobacterium sp. 3_1_27] gi|27886956|gb|EAA24076.1| Ribonuclease HII [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|294486354|gb|EFG33717.1| ribonuclease HII [Fusobacterium sp. 3_1_27] Length = 214 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 120/213 (56%), Gaps = 14/213 (6%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSK 61 I + P + + + V G+DE GRG LAGPVV AA+IL + INDSK Sbjct: 1 MEEIMDNPLY-----LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSK 55 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN-----LQVIPR 116 K++ K RE+LY+ I + +++ ++ + IDK NI A A+ A+++ Sbjct: 56 KLTEKTREKLYDIIMKNFYVAVGVSTVEEIDKLNILNADFLAMRRALKDLENIKKDKKEY 115 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + L+DG ++ + ++KGD+ SLSIAAASIIAKVTRDRLM+ YPDY F+ H Sbjct: 116 TVLVDGNLKIKEYTGKQLPIVKGDAKSLSIAAASIIAKVTRDRLMKDLASVYPDYHFEKH 175 Query: 177 VGYPTAKHQQVIKEKGPSC-IHRLTFRPLRNLS 208 GY T H + IK+KG +HR F LR ++ Sbjct: 176 KGYGTKAHIEAIKDKGAIEGVHRKVF--LRKIN 206 >gi|50842913|ref|YP_056140.1| ribonuclease HII [Propionibacterium acnes KPA171202] gi|81611490|sp|Q6A7T3|RNH2_PROAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|50840515|gb|AAT83182.1| ribonuclease HII [Propionibacterium acnes KPA171202] gi|313763669|gb|EFS35033.1| ribonuclease HII [Propionibacterium acnes HL013PA1] gi|313794063|gb|EFS42087.1| ribonuclease HII [Propionibacterium acnes HL110PA1] gi|313801450|gb|EFS42701.1| ribonuclease HII [Propionibacterium acnes HL110PA2] gi|313807870|gb|EFS46351.1| ribonuclease HII [Propionibacterium acnes HL087PA2] gi|313813532|gb|EFS51246.1| ribonuclease HII [Propionibacterium acnes HL025PA1] gi|313816846|gb|EFS54560.1| ribonuclease HII [Propionibacterium acnes HL059PA1] gi|313822239|gb|EFS59953.1| ribonuclease HII [Propionibacterium acnes HL036PA1] gi|313823528|gb|EFS61242.1| ribonuclease HII [Propionibacterium acnes HL036PA2] gi|313825855|gb|EFS63569.1| ribonuclease HII [Propionibacterium acnes HL063PA1] gi|313829535|gb|EFS67249.1| ribonuclease HII [Propionibacterium acnes HL063PA2] gi|313839830|gb|EFS77544.1| ribonuclease HII [Propionibacterium acnes HL086PA1] gi|314914671|gb|EFS78502.1| ribonuclease HII [Propionibacterium acnes HL005PA4] gi|314919216|gb|EFS83047.1| ribonuclease HII [Propionibacterium acnes HL050PA1] gi|314920874|gb|EFS84705.1| ribonuclease HII [Propionibacterium acnes HL050PA3] gi|314924571|gb|EFS88402.1| ribonuclease HII [Propionibacterium acnes HL036PA3] gi|314930442|gb|EFS94273.1| ribonuclease HII [Propionibacterium acnes HL067PA1] gi|314954505|gb|EFS98911.1| ribonuclease HII [Propionibacterium acnes HL027PA1] gi|314957375|gb|EFT01478.1| ribonuclease HII [Propionibacterium acnes HL002PA1] gi|314962003|gb|EFT06104.1| ribonuclease HII [Propionibacterium acnes HL002PA2] gi|314963583|gb|EFT07683.1| ribonuclease HII [Propionibacterium acnes HL082PA1] gi|314968585|gb|EFT12683.1| ribonuclease HII [Propionibacterium acnes HL037PA1] gi|314978796|gb|EFT22890.1| ribonuclease HII [Propionibacterium acnes HL072PA2] gi|314986438|gb|EFT30530.1| ribonuclease HII [Propionibacterium acnes HL005PA2] gi|314990798|gb|EFT34889.1| ribonuclease HII [Propionibacterium acnes HL005PA3] gi|315079437|gb|EFT51430.1| ribonuclease HII [Propionibacterium acnes HL053PA2] gi|315083537|gb|EFT55513.1| ribonuclease HII [Propionibacterium acnes HL027PA2] gi|315087217|gb|EFT59193.1| ribonuclease HII [Propionibacterium acnes HL002PA3] gi|315089391|gb|EFT61367.1| ribonuclease HII [Propionibacterium acnes HL072PA1] gi|315099296|gb|EFT71272.1| ribonuclease HII [Propionibacterium acnes HL059PA2] gi|315100529|gb|EFT72505.1| ribonuclease HII [Propionibacterium acnes HL046PA1] gi|315106699|gb|EFT78675.1| ribonuclease HII [Propionibacterium acnes HL030PA1] gi|315108924|gb|EFT80900.1| ribonuclease HII [Propionibacterium acnes HL030PA2] gi|327329811|gb|EGE71567.1| ribonuclease HII [Propionibacterium acnes HL096PA3] gi|327334326|gb|EGE76040.1| ribonuclease HII [Propionibacterium acnes HL097PA1] gi|327446256|gb|EGE92910.1| ribonuclease HII [Propionibacterium acnes HL013PA2] gi|327451918|gb|EGE98572.1| ribonuclease HII [Propionibacterium acnes HL092PA1] gi|327455047|gb|EGF01702.1| ribonuclease HII [Propionibacterium acnes HL087PA3] gi|327457665|gb|EGF04320.1| ribonuclease HII [Propionibacterium acnes HL083PA2] gi|328755121|gb|EGF68737.1| ribonuclease HII [Propionibacterium acnes HL087PA1] gi|328758100|gb|EGF71716.1| ribonuclease HII [Propionibacterium acnes HL025PA2] gi|332675850|gb|AEE72666.1| ribonuclease HII [Propionibacterium acnes 266] Length = 204 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 103/196 (52%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 3 HERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREAL 62 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S D+ + +A + + AV L V P L DG + L Sbjct: 63 FNVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGF-PVDGLT 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 122 VPDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKE 181 Query: 191 KGPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 182 LGPSRQHRMSYANVRR 197 >gi|320449238|ref|YP_004201334.1| ribonuclease HII [Thermus scotoductus SA-01] gi|320149407|gb|ADW20785.1| ribonuclease HII [Thermus scotoductus SA-01] Length = 205 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 79/192 (41%), Positives = 105/192 (54%), Gaps = 6/192 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LEA + VAG+DE GRGA AGP+VV A+IL P PF DSK + K+RE L E Sbjct: 8 LEASFWSLGLR-VAGVDEAGRGAWAGPIVVGAVILPPGRYPF--RDSKLLRPKERERLAE 64 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ A ++ A +D+ + KATL A A++ L P + + D + Sbjct: 65 EVRRVALAYALGVAEVGEVDRLGVLKATLLAAQRALDLLDPPPEALVTD--YLQVATSLP 122 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A K D S S+AAASI+AKV RDRLM + YP YGF H GY T +HQ+ + G Sbjct: 123 LLAPPKADQNSPSVAAASILAKVHRDRLMVELDRLYPGYGFARHKGYGTPEHQEALLVLG 182 Query: 193 PSCIHRLTFRPL 204 PS +HR F P+ Sbjct: 183 PSPVHRRCFAPV 194 >gi|68171965|ref|ZP_00545273.1| Ribonuclease H [Ehrlichia chaffeensis str. Sapulpa] gi|67998612|gb|EAM85357.1| Ribonuclease H [Ehrlichia chaffeensis str. Sapulpa] Length = 209 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 81/204 (39%), Positives = 115/204 (56%), Gaps = 6/204 (2%) Query: 10 PHFELEAM---VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKIS 64 P F +E + + G+DEVG G+LAGPVV AA+ ++ + I DSKK++ Sbjct: 2 PDFSIENEISKLINNKHCTIVGVDEVGYGSLAGPVVSAAVFFPKHDNHITYNIQDSKKLT 61 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR E+Y IT SI A ID++NI AT A+ A+ L ++DG Sbjct: 62 PKKRLEIYNIITPMVKWSIGLAEVHEIDQYNILNATHIAMQRALRGLNSNINYVIVDGNK 121 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +PE A AV+ GD+IS+SIAAASIIAKVTRD+LM H ++P Y ++ + GY T H Sbjct: 122 VPELPW-NAKAVVDGDNISISIAAASIIAKVTRDKLMETLHIQFPQYNWNKNKGYGTKHH 180 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208 + + + G + HR TF P ++ Sbjct: 181 LESLHKYGKTIHHRNTFAPASGIT 204 >gi|325971128|ref|YP_004247319.1| ribonuclease H [Spirochaeta sp. Buddy] gi|324026366|gb|ADY13125.1| Ribonuclease H [Spirochaeta sp. Buddy] Length = 209 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 76/192 (39%), Positives = 103/192 (53%), Gaps = 7/192 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 F EA + G+DE GRG LAGPVV AA+IL P+ +NDSKK+S K+R E Sbjct: 7 FSFEAE-----NQVLCGLDEAGRGPLAGPVVAAAVILGPDFPTEILNDSKKLSEKQRLEA 61 Query: 72 YEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID-GRSIPEDL 129 I A+ + A+ Q ID+ NI +A+L A+ A E + + + +L Sbjct: 62 EIVIKQKALYWAVGLATAQEIDRINILQASLLAMKRAYEKISSQIHVDVALVDGNQRPNL 121 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C A++ GD++ I AASI+AK RDR M + H K+P Y F H GYPT +H+ Sbjct: 122 DCITQAIVGGDALIPQIMAASILAKNQRDRYMVLCHTKWPFYNFAKHKGYPTEEHRSACL 181 Query: 190 EKGPSCIHRLTF 201 G S IHR TF Sbjct: 182 LYGLSPIHRRTF 193 >gi|111114868|ref|YP_709486.1| ribonuclease H [Borrelia afzelii PKo] gi|122956434|sp|Q0SPB8|RNH2_BORAP RecName: Full=Ribonuclease HII; Short=RNase HII gi|110890142|gb|ABH01310.1| ribonuclease H [Borrelia afzelii PKo] Length = 181 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 106/181 (58%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ N ++DSKK++ +KRE L I ++ + Sbjct: 1 MICGIDEVGRGCIFGPILSAAVVFKKKPNFIKELDDSKKLTKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S+ I+K NIH A+L A+ A ENL++ IDG+ +P+ A+IKGDSI Sbjct: 61 GEISNITIEKINIHNASLLAMQTAYENLKLNCNLVFIDGKFVPKISAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|315637651|ref|ZP_07892857.1| ribonuclease HII [Arcobacter butzleri JV22] gi|315478105|gb|EFU68832.1| ribonuclease HII [Arcobacter butzleri JV22] Length = 192 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 75/180 (41%), Positives = 101/180 (56%), Gaps = 4/180 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRG LAGP+VVA +IL + G+NDSK +S KKRE+L+++I + Sbjct: 1 MKNLCGIDEAGRGPLAGPLVVAGVILLED--IVGLNDSKVLSEKKREKLFDEIKEKSKHH 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I + + ID+ I +I +ENL+ S L+DG + Q IK D+ Sbjct: 59 IVFSDAKLIDEKGISFCLKSSILEIIENLKEFSNSFLMDGNTNFGIQILQKE--IKADAK 116 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AASI+AKV+RDR M YP Y F H GY T H + IKE G S IHR TF+ Sbjct: 117 YAQVSAASILAKVSRDRFMDEISPLYPKYDFHKHKGYGTKAHIEAIKEFGRSDIHRHTFK 176 >gi|313831400|gb|EFS69114.1| ribonuclease HII [Propionibacterium acnes HL007PA1] gi|313835012|gb|EFS72726.1| ribonuclease HII [Propionibacterium acnes HL056PA1] gi|314974275|gb|EFT18371.1| ribonuclease HII [Propionibacterium acnes HL053PA1] gi|314976720|gb|EFT20815.1| ribonuclease HII [Propionibacterium acnes HL045PA1] gi|314984422|gb|EFT28514.1| ribonuclease HII [Propionibacterium acnes HL005PA1] gi|315081336|gb|EFT53312.1| ribonuclease HII [Propionibacterium acnes HL078PA1] gi|315095246|gb|EFT67222.1| ribonuclease HII [Propionibacterium acnes HL038PA1] gi|327328324|gb|EGE70086.1| ribonuclease HII [Propionibacterium acnes HL096PA2] gi|327444349|gb|EGE91003.1| ribonuclease HII [Propionibacterium acnes HL043PA2] gi|327445013|gb|EGE91667.1| ribonuclease HII [Propionibacterium acnes HL043PA1] gi|328760136|gb|EGF73714.1| ribonuclease HII [Propionibacterium acnes HL099PA1] Length = 204 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 103/196 (52%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 3 HERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREAL 62 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S D+ + +A + + AV L V P L DG + L Sbjct: 63 FNVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGF-PVDGLT 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 122 VPDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKE 181 Query: 191 KGPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 182 LGPSRQHRMSYANVRR 197 >gi|216264047|ref|ZP_03436041.1| ribonuclease HII [Borrelia afzelii ACA-1] gi|215980091|gb|EEC20913.1| ribonuclease HII [Borrelia afzelii ACA-1] Length = 181 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 107/181 (59%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ N ++DSKK++ +KRE L I ++ + Sbjct: 1 MICGIDEVGRGCIFGPILSAAVVFKKKPNFIKELDDSKKLTKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ IDG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCNLVFIDGKFVPKISAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|88658621|ref|YP_507735.1| ribonuclease HII [Ehrlichia chaffeensis str. Arkansas] gi|123492872|sp|Q2GFP8|RNH2_EHRCR RecName: Full=Ribonuclease HII; Short=RNase HII gi|88600078|gb|ABD45547.1| ribonuclease HII [Ehrlichia chaffeensis str. Arkansas] Length = 209 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 81/204 (39%), Positives = 115/204 (56%), Gaps = 6/204 (2%) Query: 10 PHFELEAM---VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKIS 64 P F +E + + G+DEVG G+LAGPVV AA+ ++ + I DSKK++ Sbjct: 2 PDFSIENEISKLINNKHCTIVGVDEVGYGSLAGPVVSAAVFFPKHDNHITYNIQDSKKLT 61 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR E+Y IT SI A ID++NI AT A+ A+ L ++DG Sbjct: 62 PKKRLEIYNIITPMVKWSIGLAEVHEIDQYNILNATHIAMQRALRGLNSNIDYVIVDGNK 121 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +PE A AV+ GD+IS+SIAAASIIAKVTRD+LM H ++P Y ++ + GY T H Sbjct: 122 VPELPW-NAKAVVDGDNISISIAAASIIAKVTRDKLMETLHIQFPQYNWNKNKGYGTKHH 180 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208 + + + G + HR TF P ++ Sbjct: 181 LESLHKYGKTIHHRNTFAPASGIT 204 >gi|296327674|ref|ZP_06870216.1| ribonuclease H [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155205|gb|EFG95980.1| ribonuclease H [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 213 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 84/212 (39%), Positives = 118/212 (55%), Gaps = 13/212 (6%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSK 61 I + P + + V G+DE GRG LAGPVV AA+IL INDSK Sbjct: 1 MEEIMDNPLYFYDLE-----YKNVIGVDEAGRGPLAGPVVAAAVILKEYTEELDEINDSK 55 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN----LQVIPRS 117 K++ KKRE+LY+ I + +++ ++ + IDK NI A A+ A+++ + Sbjct: 56 KLTEKKREKLYDIIMKNFDVAVGISTVEEIDKLNILNADFLAMRRALKDLKSLKNEKEYT 115 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 L+DG ++ + ++KGD+ SLSIAAASIIAKVTRDRLM+ YPDY F+ H Sbjct: 116 VLVDGNLKIKEYIGKQLPIVKGDAKSLSIAAASIIAKVTRDRLMKDLANIYPDYSFEKHK 175 Query: 178 GYPTAKHQQVIKEKGPSC-IHRLTFRPLRNLS 208 GY T H + IK+KG +HR F LR + Sbjct: 176 GYGTKTHIEAIKDKGAIEGVHRKVF--LRKIL 205 >gi|282854576|ref|ZP_06263911.1| ribonuclease HII [Propionibacterium acnes J139] gi|282582158|gb|EFB87540.1| ribonuclease HII [Propionibacterium acnes J139] Length = 217 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 103/196 (52%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 16 HERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREAL 75 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S D+ + +A + + AV L V P L DG + L Sbjct: 76 FNVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGF-PVDGLT 134 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 135 VPDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKE 194 Query: 191 KGPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 195 LGPSRQHRMSYANVRR 210 >gi|227486581|ref|ZP_03916897.1| ribonuclease H [Anaerococcus lactolyticus ATCC 51172] gi|227235399|gb|EEI85414.1| ribonuclease H [Anaerococcus lactolyticus ATCC 51172] Length = 207 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 80/190 (42%), Positives = 115/190 (60%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E++ + E +AGIDEVGRG LAGPVV A+I+ N+ G+ DSKK+S KK L Sbjct: 9 EIKKEIYET-YDLIAGIDEVGRGPLAGPVVTCAVIMKKNSHIEGVTDSKKLSRKKMLVLK 67 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 EKI + A +S A+ + ID+ NI +ATL A+ A+++L++ P LID I D Sbjct: 68 EKILADALAVSYGFANSRKIDQINIRQATLQAMKDALDHLEIRPDIVLIDAERIDTD--L 125 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD +I+ ASI+AKV RD +M K YP YGF+++ GY T H Q +++ Sbjct: 126 PQLNIVKGDLNEYAISCASILAKVRRDDIMINFSKIYPGYGFETNFGYGTKAHYQGLEQH 185 Query: 192 GPSCIHRLTF 201 G + IHR +F Sbjct: 186 GETPIHRQSF 195 >gi|319955897|ref|YP_004167160.1| rnase hii [Nitratifractor salsuginis DSM 16511] gi|319418301|gb|ADV45411.1| RNase HII [Nitratifractor salsuginis DSM 16511] Length = 205 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 69/182 (37%), Positives = 99/182 (54%), Gaps = 5/182 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 GIDE GRG LAGP+VVA +IL G+ DSK++S ++RE+LY +I + + Sbjct: 23 CGIDEAGRGPLAGPLVVAGVIL--LRRINGLQDSKRLSAQEREKLYGRIVERSRYHLVII 80 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 ID I + A+ VE L L DG S ++K D + Sbjct: 81 EASRIDDWGISRCLRKALEEIVEVLGGEGVHFLFDGNSRYGVPGIA--TMVKADGKVKEV 138 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 +AASI+AKVTRDR+M ++YP+YGF+ H GY TA+H + I+ G IHR +F+ ++ Sbjct: 139 SAASILAKVTRDRIMEALAREYPEYGFEEHKGYGTARHLEAIERFGCCPIHRRSFQ-VKK 197 Query: 207 LS 208 S Sbjct: 198 FS 199 >gi|299142243|ref|ZP_07035376.1| ribonuclease HII [Prevotella oris C735] gi|298576332|gb|EFI48205.1| ribonuclease HII [Prevotella oris C735] Length = 220 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 70/188 (37%), Positives = 99/188 (52%), Gaps = 11/188 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAG V AA+IL P+ +NDSKK+S ++R L E+I A ++ Sbjct: 13 AGCDEAGRGCLAGSVYAAAVILPPDYDNPALNDSKKLSVRQRYALREQIEHDALAWAVGV 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED----------LPCQAFA 135 A+ + ID+ NI A+ A++ A++ L+ P + ++DG Sbjct: 73 ATPEEIDEINILHASFLAMHRALDQLKKRPEAVIVDGNHFDPYVVGRGLPNAGKQLPHTC 132 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGD +IAAASI+AK RD M K YP Y ++ + GYPT KH I E G Sbjct: 133 VIKGDGKYQNIAAASILAKTYRDDYMTEQAKLYPFYDWEKNKGYPTKKHYAGIAEHGICE 192 Query: 196 IHRLTFRP 203 +HR ++ Sbjct: 193 LHRRSYNT 200 >gi|254304340|ref|ZP_04971698.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324532|gb|EDK89782.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 217 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 86/212 (40%), Positives = 119/212 (56%), Gaps = 13/212 (6%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSK 61 I + P + + + V G+DE GRG LAGPVV AA+IL INDSK Sbjct: 1 MEEIMDNPLY-----LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYTEELNEINDSK 55 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI- 120 K++ KKRE+LY+ I + +++ ++ + IDK NI A A+ A+ +L+ I Sbjct: 56 KLTEKKREKLYDIIMKNFDVAVGISTVEEIDKLNILNADFLAMRRALNDLKNIKNEKEYT 115 Query: 121 ---DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 DG ++ + F ++KGD+ SLSIAAASIIAKVTRDR M+ YPDY F+ H Sbjct: 116 VLVDGNLKIKEYVGKQFPIVKGDAKSLSIAAASIIAKVTRDRFMKDLASIYPDYCFEKHK 175 Query: 178 GYPTAKHQQVIKEKGPSC-IHRLTFRPLRNLS 208 GY T H +VIK+KG +HR F LR + Sbjct: 176 GYGTKAHIEVIKDKGAIEGVHRKVF--LRKIL 205 >gi|319788756|ref|YP_004090071.1| Ribonuclease H [Ruminococcus albus 7] gi|315450623|gb|ADU24185.1| Ribonuclease H [Ruminococcus albus 7] Length = 204 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 82/186 (44%), Positives = 113/186 (60%), Gaps = 2/186 (1%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + + V G DE GRG LAG V AA++ D + + GINDSKK++ KKRE+L+++I Sbjct: 8 DIYREKYEVVCGCDEAGRGPLAGDVFAAAVVFDKDTVIEGINDSKKLTAKKREKLFDEII 67 Query: 77 SSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A SI A+ I+ NI + A+ +VE +++ P LIDG DL C A A Sbjct: 68 EKAQDFSIQCATVAEIEDINILNCAMLAMKRSVEAMKIKPNVCLIDGNK-TPDLECDAIA 126 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGD+ S +IAAASI+AKV RDR M +KYP++ F+ H GY T H Q+I + G S Sbjct: 127 VVKGDAQSQAIAAASILAKVARDRYMLQMAEKYPEWQFEKHKGYGTKLHYQMIDKYGESP 186 Query: 196 IHRLTF 201 IHR +F Sbjct: 187 IHRPSF 192 >gi|31794078|ref|NP_856571.1| ribonuclease HII [Mycobacterium bovis AF2122/97] gi|39932282|sp|Q7TXM7|RNH2_MYCBO RecName: Full=Ribonuclease HII; Short=RNase HII gi|31619673|emb|CAD96613.1| PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII) [Mycobacterium bovis AF2122/97] Length = 264 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 112/197 (56%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P I ++DSKK+S + RE+ Sbjct: 22 TLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREK 81 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A+ + +D+H +H A ++ + AV L V P L DG +P L Sbjct: 82 LFPLICRYAVAYHVVFIPSAEVDRHGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GL 140 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + VI GD+ + IAAAS++AKV+RDR+M +P YGF H GY T H + + Sbjct: 141 PMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALA 200 Query: 190 EKGPSCIHRLTFRPLRN 206 GP HR +F +R Sbjct: 201 RLGPCPQHRYSFINVRR 217 >gi|260495645|ref|ZP_05815769.1| ribonuclease HII [Fusobacterium sp. 3_1_33] gi|260196828|gb|EEW94351.1| ribonuclease HII [Fusobacterium sp. 3_1_33] Length = 214 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 83/213 (38%), Positives = 120/213 (56%), Gaps = 14/213 (6%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSK 61 + + P + + + V G+DE GRG LAGPVV AA+IL + INDSK Sbjct: 1 MEEVMDNPLY-----LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSK 55 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN-----LQVIPR 116 K++ KKRE+LY+ I + +++ ++ + IDK NI A A+ A+++ Sbjct: 56 KLTEKKREKLYDIIMKNFYVAVGISTVEEIDKMNILNADFLAMRRALKDLENIKKDKKEY 115 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 L+DG ++ + ++KGD+ SLS+AAASIIAKVTRDRLM+ YPDY F+ H Sbjct: 116 IVLVDGNLKIKEYSGKQLPIVKGDAKSLSVAAASIIAKVTRDRLMKDLANTYPDYSFEKH 175 Query: 177 VGYPTAKHQQVIKEKGPSC-IHRLTFRPLRNLS 208 GY T H +VIK KG +HR F LR ++ Sbjct: 176 KGYGTKAHIEVIKNKGAIEGVHRKVF--LRKIN 206 >gi|328949830|ref|YP_004367165.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884] gi|328450154|gb|AEB11055.1| Ribonuclease H [Marinithermus hydrothermalis DSM 14884] Length = 199 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 76/192 (39%), Positives = 104/192 (54%), Gaps = 6/192 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE + + V G+DE GRGALAGP+VV A+IL P PF DSK K RE L Sbjct: 4 LELPLWRDGL-VVCGVDEAGRGALAGPIVVGAVILPPGPHPF--RDSKACPPKTREALLA 60 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ +A ++ A +D + KAT A + A+ L+ P + D + D Sbjct: 61 RLERTALAYAVGVAEAGEVDALGVLKATHLAAHRALAALEARPDHLITDYLFLETD--LP 118 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 AV K + S+++AAASI+AKVTRDR+MR + YP YGF H GY T H + + G Sbjct: 119 LTAVPKAEEKSVTVAAASILAKVTRDRIMRELDRAYPGYGFAQHKGYGTRAHLEALARLG 178 Query: 193 PSCIHRLTFRPL 204 PS +HR F P+ Sbjct: 179 PSPVHRRRFAPV 190 >gi|254232994|ref|ZP_04926321.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis C] gi|124602053|gb|EAY61063.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis C] Length = 264 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 78/197 (39%), Positives = 111/197 (56%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P I ++DSKK+S + RE+ Sbjct: 22 TLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREK 81 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A+ + +D+ +H A ++ + AV L V P L DG +P L Sbjct: 82 LFSLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GL 140 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + VI GD+ + IAAAS++AKV+RDR+M +P YGF H GY T H + + Sbjct: 141 PMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALA 200 Query: 190 EKGPSCIHRLTFRPLRN 206 GP HR +F +R Sbjct: 201 RLGPCPQHRYSFINVRR 217 >gi|15610039|ref|NP_217418.1| ribonuclease HII [Mycobacterium tuberculosis H37Rv] gi|15842445|ref|NP_337482.1| ribonuclease HII [Mycobacterium tuberculosis CDC1551] gi|121638783|ref|YP_979007.1| ribonuclease HII [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662746|ref|YP_001284269.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra] gi|148824091|ref|YP_001288845.1| ribonuclease HII [Mycobacterium tuberculosis F11] gi|167969531|ref|ZP_02551808.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra] gi|215404876|ref|ZP_03417057.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987] gi|215412745|ref|ZP_03421457.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A] gi|215428343|ref|ZP_03426262.1| ribonuclease HII [Mycobacterium tuberculosis T92] gi|215431850|ref|ZP_03429769.1| ribonuclease HII [Mycobacterium tuberculosis EAS054] gi|215447164|ref|ZP_03433916.1| ribonuclease HII [Mycobacterium tuberculosis T85] gi|218754655|ref|ZP_03533451.1| ribonuclease HII [Mycobacterium tuberculosis GM 1503] gi|219558926|ref|ZP_03538002.1| ribonuclease HII [Mycobacterium tuberculosis T17] gi|224991275|ref|YP_002645964.1| ribonuclease HII [Mycobacterium bovis BCG str. Tokyo 172] gi|253798010|ref|YP_003031011.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 1435] gi|254365542|ref|ZP_04981587.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis str. Haarlem] gi|254551974|ref|ZP_05142421.1| ribonuclease HII [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187921|ref|ZP_05765395.1| ribonuclease HII [Mycobacterium tuberculosis CPHL_A] gi|260202037|ref|ZP_05769528.1| ribonuclease HII [Mycobacterium tuberculosis T46] gi|260206220|ref|ZP_05773711.1| ribonuclease HII [Mycobacterium tuberculosis K85] gi|289444457|ref|ZP_06434201.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T46] gi|289448567|ref|ZP_06438311.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CPHL_A] gi|289553309|ref|ZP_06442519.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 605] gi|289571090|ref|ZP_06451317.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T17] gi|289575607|ref|ZP_06455834.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis K85] gi|289746701|ref|ZP_06506079.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987] gi|289751567|ref|ZP_06510945.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T92] gi|289755014|ref|ZP_06514392.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis EAS054] gi|289759022|ref|ZP_06518400.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T85] gi|289763078|ref|ZP_06522456.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis GM 1503] gi|294994002|ref|ZP_06799693.1| ribonuclease HII [Mycobacterium tuberculosis 210] gi|297635520|ref|ZP_06953300.1| ribonuclease HII [Mycobacterium tuberculosis KZN 4207] gi|297732519|ref|ZP_06961637.1| ribonuclease HII [Mycobacterium tuberculosis KZN R506] gi|298526371|ref|ZP_07013780.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A] gi|306777190|ref|ZP_07415527.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu001] gi|306781097|ref|ZP_07419434.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu002] gi|306785737|ref|ZP_07424059.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu003] gi|306789776|ref|ZP_07428098.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu004] gi|306794590|ref|ZP_07432892.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu005] gi|306798833|ref|ZP_07437135.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu006] gi|306804679|ref|ZP_07441347.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu008] gi|306808871|ref|ZP_07445539.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu007] gi|306968970|ref|ZP_07481631.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu009] gi|306973307|ref|ZP_07485968.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu010] gi|307081015|ref|ZP_07490185.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu011] gi|307085614|ref|ZP_07494727.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu012] gi|313659851|ref|ZP_07816731.1| ribonuclease HII [Mycobacterium tuberculosis KZN V2475] gi|1710612|sp|Q10793|RNH2_MYCTU RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226625|sp|A1KMP6|RNH2_MYCBP RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226629|sp|A5U6Q7|RNH2_MYCTA RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807981|sp|C1AG17|RNH2_MYCBT RecName: Full=Ribonuclease HII; Short=RNase HII gi|1403423|emb|CAA98340.1| PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII) [Mycobacterium tuberculosis H37Rv] gi|13882748|gb|AAK47296.1| ribonuclease HII [Mycobacterium tuberculosis CDC1551] gi|121494431|emb|CAL72912.1| Probable ribonuclease HII protein rnhB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151055|gb|EBA43100.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis str. Haarlem] gi|148506898|gb|ABQ74707.1| ribonuclease HII [Mycobacterium tuberculosis H37Ra] gi|148722618|gb|ABR07243.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis F11] gi|224774390|dbj|BAH27196.1| ribonuclease HII [Mycobacterium bovis BCG str. Tokyo 172] gi|253319513|gb|ACT24116.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 1435] gi|289417376|gb|EFD14616.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T46] gi|289421525|gb|EFD18726.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CPHL_A] gi|289437941|gb|EFD20434.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 605] gi|289540038|gb|EFD44616.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis K85] gi|289544844|gb|EFD48492.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T17] gi|289687229|gb|EFD54717.1| ribonuclease HII [Mycobacterium tuberculosis 02_1987] gi|289692154|gb|EFD59583.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T92] gi|289695601|gb|EFD63030.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis EAS054] gi|289710584|gb|EFD74600.1| ribonuclease HII protein rnhB (RNase HII) [Mycobacterium tuberculosis GM 1503] gi|289714586|gb|EFD78598.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis T85] gi|298496165|gb|EFI31459.1| ribonuclease HII [Mycobacterium tuberculosis 94_M4241A] gi|308214472|gb|EFO73871.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu001] gi|308326083|gb|EFP14934.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu002] gi|308329647|gb|EFP18498.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu003] gi|308333786|gb|EFP22637.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu004] gi|308337180|gb|EFP26031.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu005] gi|308340911|gb|EFP29762.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu006] gi|308344823|gb|EFP33674.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu007] gi|308348771|gb|EFP37622.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu008] gi|308353472|gb|EFP42323.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu009] gi|308357337|gb|EFP46188.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu010] gi|308361221|gb|EFP50072.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu011] gi|308364841|gb|EFP53692.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis SUMu012] gi|323718512|gb|EGB27683.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis CDC1551A] gi|326904516|gb|EGE51449.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis W-148] gi|328457784|gb|AEB03207.1| ribonuclease HII protein rnhB [Mycobacterium tuberculosis KZN 4207] Length = 264 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 78/197 (39%), Positives = 111/197 (56%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P I ++DSKK+S + RE+ Sbjct: 22 TLESALHRGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIASLAALDDSKKLSEQAREK 81 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A+ + +D+ +H A ++ + AV L V P L DG +P L Sbjct: 82 LFPLICRYAVAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVP-GL 140 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + VI GD+ + IAAAS++AKV+RDR+M +P YGF H GY T H + + Sbjct: 141 PMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALA 200 Query: 190 EKGPSCIHRLTFRPLRN 206 GP HR +F +R Sbjct: 201 RLGPCPQHRYSFINVRR 217 >gi|325916627|ref|ZP_08178890.1| RNase HII [Xanthomonas vesicatoria ATCC 35937] gi|325537181|gb|EGD08914.1| RNase HII [Xanthomonas vesicatoria ATCC 35937] Length = 241 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 83/185 (44%), Positives = 119/185 (64%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-II 81 VAG+DE GRG LAGPV VAA++ DP+ G++DSK+++ ++RE+LY +I A Sbjct: 31 RLVAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 91 SVVLIASEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + SI AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 151 LDRSIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYATPVHLAALRSHGPCPQHRRSF 210 Query: 202 RPLRN 206 P+R Sbjct: 211 APVRR 215 >gi|314981831|gb|EFT25924.1| ribonuclease HII [Propionibacterium acnes HL110PA3] gi|315090696|gb|EFT62672.1| ribonuclease HII [Propionibacterium acnes HL110PA4] Length = 204 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 103/196 (52%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 3 HERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREAL 62 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S D+ + +A + + AV L V P L DG + L Sbjct: 63 FNVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGF-PVDGLT 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 122 VPDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKE 181 Query: 191 KGPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 182 LGPSRQHRMSYANVRR 197 >gi|254821206|ref|ZP_05226207.1| ribonuclease HII [Mycobacterium intracellulare ATCC 13950] Length = 239 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 76/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L P + ++DSKK++ RE+ Sbjct: 19 TLESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPGRMESLAALDDSKKLTEAAREK 78 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A + +D+ +H A ++ + AV L V P L DG +P L Sbjct: 79 LFPLIRRYALAYHVVFIPPAEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD+++ IAAAS++AKV+RDRLM +P YGF H GY T H + Sbjct: 138 AVPSLPVIGGDAVAACIAAASVLAKVSRDRLMVAMEADHPGYGFALHKGYSTPAHSTALA 197 Query: 190 EKGPSCIHRLTFRPLRN 206 GP HR +F +R Sbjct: 198 RLGPCPEHRYSFINVRR 214 >gi|159470503|ref|XP_001693396.1| predicted protein [Chlamydomonas reinhardtii] gi|158282899|gb|EDP08650.1| predicted protein [Chlamydomonas reinhardtii] Length = 197 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 82/193 (42%), Positives = 112/193 (58%), Gaps = 10/193 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP-----NNIPFGINDSKKISHKKREELYEKITSSAI 80 V G DE GRG LAGPVV A +L +P G+NDSK I+ +RE ++E +T+ + Sbjct: 1 VGGADEAGRGPLAGPVVAAVCVLPHQSDTSWQMPAGLNDSKAITEDEREAIFEALTTDSR 60 Query: 81 --ISISSASHQYIDKHNIHKAT---LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 ++S H+ ID+ NI +A + V L+DG +P+DLPC A A Sbjct: 61 VRWAVSIIDHETIDRINILQAALSAMRNSALDVHGQAPGLDYLLVDGNKLPKDLPCPARA 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 V+KGD+ IAAASIIAKVTRDRLM K+YP YGF H GY +H I GPS Sbjct: 121 VVKGDATVACIAAASIIAKVTRDRLMLELDKQYPQYGFAQHKGYGVPQHMAAIHTHGPSA 180 Query: 196 IHRLTFRPLRNLS 208 +HR +F P+++++ Sbjct: 181 VHRRSFEPVKSMT 193 >gi|304383864|ref|ZP_07366321.1| ribonuclease HII [Prevotella marshii DSM 16973] gi|304334942|gb|EFM01215.1| ribonuclease HII [Prevotella marshii DSM 16973] Length = 198 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 75/177 (42%), Positives = 110/177 (62%), Gaps = 1/177 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG+LAG V AA+IL P+ INDSKK++ ++R L E I + AI +I Sbjct: 13 AGCDEAGRGSLAGSVYAAAVILPPDYRNDAINDSKKLTPRQRYALREVIQTDAIAWAIGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ + ID+ NI A++ A++ A++ L + P + +IDG ++KGD+ LS Sbjct: 73 ATAEEIDRINILNASILAMHRALDGLHLRPEAVIIDGNRFQPYRNLPCQTIVKGDAKYLS 132 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAA+I+AK RD M ++YP Y + S+ GYPT +H+Q IK+ G S +HR +FR Sbjct: 133 IAAAAILAKTYRDDYMDALAEEYPVYEWHSNKGYPTKRHRQAIKDYGASPLHRQSFR 189 >gi|145224747|ref|YP_001135425.1| ribonuclease HII [Mycobacterium gilvum PYR-GCK] gi|315445077|ref|YP_004077956.1| RNase HII [Mycobacterium sp. Spyr1] gi|189043630|sp|A4TE84|RNH2_MYCGI RecName: Full=Ribonuclease HII; Short=RNase HII gi|145217233|gb|ABP46637.1| RNase HII [Mycobacterium gilvum PYR-GCK] gi|315263380|gb|ADU00122.1| RNase HII [Mycobacterium sp. Spyr1] Length = 253 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 2/199 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA IL PN + ++DSKK++ +RE Sbjct: 19 TLESALYRAGLGPVAGVDEVGRGACAGPLVVAACILGPNRLESLSALDDSKKLNESERER 78 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L+ I A+ + ++ LP Sbjct: 79 LFPLIRRYAVAFHVVFIPSVEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFRVPGLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + V+ GD+ + IAAAS++AKV+RDRLM +++P YGF H GY T H + + Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMDQEHPGYGFADHKGYSTRAHSAALND 198 Query: 191 KGPSCIHRLTFRPLRNLSV 209 GPS HR +F +R L V Sbjct: 199 LGPSTQHRFSFINVRRLVV 217 >gi|257459902|ref|ZP_05625008.1| ribonuclease HII [Campylobacter gracilis RM3268] gi|257442754|gb|EEV17891.1| ribonuclease HII [Campylobacter gracilis RM3268] Length = 187 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 5/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRG LAGP+ VA +L G+ DSKK+S K+REELY +I ++ I Sbjct: 5 ICGIDEAGRGCLAGPLCVAGCVL--QREIAGLADSKKLSEKRREELYARIIENSRYKIVE 62 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S +D+ + A+ + + DG + ++K D+ Sbjct: 63 ISSAQVDEAGLSSCLRSALEQILAYFMGFSGQIIYDGNATFGVRGL--QTLVKADAQIAE 120 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++AASI+AKVTRDR M ++YP YGF + GY + H I+ G + HR +++ ++ Sbjct: 121 VSAASILAKVTRDRTMNELARRYPQYGFAQNKGYGSRAHIAAIERYGLTPFHRASYK-IK 179 Query: 206 NL 207 +L Sbjct: 180 SL 181 >gi|28210941|ref|NP_781885.1| ribonuclease HII [Clostridium tetani E88] gi|39932379|sp|Q895L8|RNH2_CLOTE RecName: Full=Ribonuclease HII; Short=RNase HII gi|28203380|gb|AAO35822.1| ribonuclease HII [Clostridium tetani E88] Length = 271 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 78/196 (39%), Positives = 110/196 (56%), Gaps = 9/196 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHK 66 ++ + N +AG+DEVGRG LAGP+V AA+ILD N +G+ DSKK+ K Sbjct: 74 YDFDKKF--ANNVLIAGVDEVGRGPLAGPIVAAAVILDLNYKNHNDLFYGLKDSKKLRAK 131 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +RE L I A +I + ID I + + + L+V P + DG SI Sbjct: 132 ERENLSHIIKDKALYYNIFELDNHMIDTSGIAWCNNEVLKKSTLGLEVTPGIVISDGFSI 191 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 ++ + +IKGD+ S SIAAASIIAKV RD+ M K YP YGF+ + GY T +H Sbjct: 192 K-NINIKNEYIIKGDAKSASIAAASIIAKVYRDKKMEEYSKIYPHYGFEKNSGYGTDEHT 250 Query: 186 QVIKEKGPSCIHRLTF 201 + +K+ GP IHR++F Sbjct: 251 KALKKYGPCPIHRMSF 266 >gi|323143575|ref|ZP_08078252.1| ribonuclease HII [Succinatimonas hippei YIT 12066] gi|322416638|gb|EFY07295.1| ribonuclease HII [Succinatimonas hippei YIT 12066] Length = 213 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 1/185 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 V G DE GRG L G VV A +ILDP+ G+ DSKK+S KKR+ L +I +A I Sbjct: 19 LVCGADEAGRGPLVGNVVAACVILDPSRPISGLADSKKLSEKKRDALALQIKENALAYGI 78 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + + ID+ NI A+L+A+ A N+ LIDG + D P AV+KGD+ Sbjct: 79 GQCTPKEIDRMNILYASLEAMRRAYVNMHKTCELMLIDGNKLIPDFPLAMQAVVKGDARV 138 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASI+AK RD + K+YP+YGF H GYPTA H +V+ + +R+T+ P Sbjct: 139 PEISAASILAKTERDAQLYALDKQYPEYGFARHKGYPTAAHFEVLHKLPLLSCYRMTYAP 198 Query: 204 LRNLS 208 +R L Sbjct: 199 IRKLL 203 >gi|148377935|ref|YP_001256811.1| ribonuclease H II [Mycoplasma agalactiae PG2] gi|148291981|emb|CAL59373.1| Ribonuclease H II [Mycoplasma agalactiae PG2] Length = 206 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 1/194 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E +AG+DE GRG AGP+VVA++I+ I I DSKK+S K+R+ L Sbjct: 2 LDYELKNWND-YKLIAGVDEAGRGCCAGPLVVASVIMPNGYINENIKDSKKLSAKQRDIL 60 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +++I I K + + +I ++L Sbjct: 61 FDEILKVCIDYHIVTLPSSYVDKYNPKKSSKNGMKICIDSLNTKPDLVITDFEKIDELAI 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGDSIS ++A ASI+AKVTRDR M KY +Y F+ H GY T +H + I + Sbjct: 121 KQVNLVKGDSISFNVACASILAKVTRDRYMIKIANKYKEYEFEKHKGYCTKRHTESIIKY 180 Query: 192 GPSCIHRLTFRPLR 205 G S HRLT++ +R Sbjct: 181 GASPEHRLTYKNVR 194 >gi|289670236|ref|ZP_06491311.1| ribonuclease HII [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 242 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 83/184 (45%), Positives = 118/184 (64%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-II 81 VAG+DE GRG LAGPV VAA++ DP+ G++DSK+++ ++RE+LY +I A Sbjct: 31 RLVAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQLYARIVDRALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 91 SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLM H ++P+Y FD H GY T H +K GP HR +F Sbjct: 151 LDRAIMAASIVAKVTRDRLMHELHTQHPEYRFDQHKGYSTPVHLAALKTHGPCPQHRRSF 210 Query: 202 RPLR 205 P+R Sbjct: 211 APVR 214 >gi|296268970|ref|YP_003651602.1| ribonuclease H [Thermobispora bispora DSM 43833] gi|296091757|gb|ADG87709.1| Ribonuclease H [Thermobispora bispora DSM 43833] Length = 241 Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 67/197 (34%), Positives = 103/197 (52%), Gaps = 2/197 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + K PVAG+DE GRGA AGP+VVA++IL G+ DSK + RE L Sbjct: 19 YGYERALARKGFAPVAGVDEAGRGACAGPLVVASVIL--GRRIAGLADSKLLGEPVRERL 76 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++++ ++A + A + ++ LP Sbjct: 77 HDRVVAAAQAVSVVVIPPGEIDEHGLHKCNVAGVRRAVAGLGLEPGYILVDGFPVPGLPA 136 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + A+ KGD ++ +AAASI+AKVTRDRLMR H++YP+YGFD++ GY TA H++ + Sbjct: 137 PSLAMWKGDRVAACVAAASIVAKVTRDRLMRRLHERYPEYGFDTNKGYVTAAHRRALARY 196 Query: 192 GPSCIHRLTFRPLRNLS 208 GP HR +F + ++ Sbjct: 197 GPCPEHRFSFVTVARVT 213 >gi|271970454|ref|YP_003344650.1| ribonuclease H [Streptosporangium roseum DSM 43021] gi|270513629|gb|ACZ91907.1| Ribonuclease H [Streptosporangium roseum DSM 43021] Length = 222 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 76/200 (38%), Positives = 109/200 (54%), Gaps = 3/200 (1%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P + LE ++ VAG+DEVGRGA AGPV V A++ D + P G+ DSK +S +R Sbjct: 2 PPSYALERLLSADGTKLVAGVDEVGRGAWAGPVAVCAVVTDLSEPPAGLTDSKMLSPARR 61 Query: 69 EELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + +IT +A I ASH+ ID + +A A A+ L V P + ++DG+ Sbjct: 62 TSMVAEITGWAAGIGYGEASHEEIDALGMTEALRRAAGRALAGLPVRPDAVILDGKHDYL 121 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 P IKGD +S+AAAS+IAKV RD M + +YGF + GYP+ HQ Sbjct: 122 GAPWPVRCEIKGDLSCVSVAAASVIAKVRRDAYMASLGLE--EYGFADNAGYPSPVHQAA 179 Query: 188 IKEKGPSCIHRLTFRPLRNL 207 + GP+ HRL++ L +L Sbjct: 180 LASLGPTAHHRLSWSYLDDL 199 >gi|325479041|gb|EGC82142.1| ribonuclease HII [Anaerococcus prevotii ACS-065-V-Col13] Length = 209 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 107/183 (58%), Gaps = 3/183 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI-TSS 78 +AGIDEVGRG LAGPVV A+I+ ++ GI DSKK+S KK L EKI + Sbjct: 15 HDKYKLIAGIDEVGRGPLAGPVVTCAVIMKSDSAIDGITDSKKLSRKKMLNLKEKILEDT 74 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + A+ + ID+ NI AT A+ A+ NL++ P LID I D ++K Sbjct: 75 ICYAYGYANPRLIDRVNIKNATHKAMEDALNNLKIKPEIVLIDAERIDTD--IPQLNIVK 132 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD I+ ASI+AK+ RD +M K YP+YGFD+++GY T KH Q ++E G + IHR Sbjct: 133 GDLNEYVISCASILAKIRRDDIMINFSKLYPNYGFDTNMGYGTKKHYQGLEEYGETSIHR 192 Query: 199 LTF 201 TF Sbjct: 193 QTF 195 >gi|21230816|ref|NP_636733.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769185|ref|YP_243947.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. 8004] gi|39932426|sp|Q8PAW7|RNH2_XANCP RecName: Full=Ribonuclease HII; Short=RNase HII gi|81304856|sp|Q4USP6|RNH2_XANC8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|21112418|gb|AAM40657.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574517|gb|AAY49927.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. 8004] Length = 240 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 83/185 (44%), Positives = 117/185 (63%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DE GRG LAGPV VAA++ DP G++DSK++S ++RE+LY +I A Sbjct: 31 RLIAGVDEAGRGPLAGPVAVAAVVFDPAKPRINGLDDSKQLSAERREQLYARIVDRALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 91 SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLMR H ++P Y FD H GY T H ++ GP HR +F Sbjct: 151 LDRAIMAASIVAKVTRDRLMRELHAQHPQYRFDLHKGYSTPAHLAALQTHGPCPQHRRSF 210 Query: 202 RPLRN 206 P+R Sbjct: 211 APVRR 215 >gi|302038368|ref|YP_003798690.1| ribonuclease HII [Candidatus Nitrospira defluvii] gi|300606432|emb|CBK42765.1| Ribonuclease HII [Candidatus Nitrospira defluvii] Length = 224 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 87/201 (43%), Positives = 119/201 (59%), Gaps = 2/201 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P E E R + +AG+DE GRG LAGPVV AA++L G+NDSK++ R Sbjct: 12 PTEEFEVEARCRGYRHIAGLDEAGRGPLAGPVVAAAVVLPRRCSLPGLNDSKQVGESDRV 71 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L+ +I A + I +A+ ID+ NI AT A+ A+E L + P L+D ++ Sbjct: 72 RLFVEIVRRATGVGIGAATEAEIDQLNILHATRLAMRRALEALPLQPDFLLLDAVTLS-G 130 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L ++IKGD +S SIAAASIIAKVTRDRLM H+ YP Y F H GY T +H +++ Sbjct: 131 LSIPQRSIIKGDGLSCSIAAASIIAKVTRDRLMVEYHRWYPQYNFAEHKGYGTPEHLRLL 190 Query: 189 KEKGPSCIHRLTFRPLRNLSV 209 +E GP IHR +F P++ L V Sbjct: 191 REHGPCAIHRRSFAPVQQLCV 211 >gi|257066780|ref|YP_003153036.1| Ribonuclease H [Anaerococcus prevotii DSM 20548] gi|256798660|gb|ACV29315.1| Ribonuclease H [Anaerococcus prevotii DSM 20548] Length = 209 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 74/183 (40%), Positives = 105/183 (57%), Gaps = 3/183 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 ++ +AGIDEVGRG LAGPVV A+I+ ++ G+ DSKK++ KK L EKI A Sbjct: 15 HEDYELIAGIDEVGRGPLAGPVVTCAVIMKRDSNIGGVTDSKKLTRKKMLSLKEKILDDA 74 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + A+ ID+ NI AT A+ A+ L++ P LID I D ++K Sbjct: 75 IDFAYGYANPSLIDELNIKNATHKAMEDALNKLKIRPEIVLIDAERINTD--IPQMNIVK 132 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD I+ ASI+AKV RD +M K YP Y F++++GY T KH + +++ G + IHR Sbjct: 133 GDLNEYVISCASILAKVRRDDIMINFSKIYPGYSFETNMGYGTKKHYEGLEKYGETPIHR 192 Query: 199 LTF 201 TF Sbjct: 193 QTF 195 >gi|269926380|ref|YP_003323003.1| Ribonuclease H [Thermobaculum terrenum ATCC BAA-798] gi|269790040|gb|ACZ42181.1| Ribonuclease H [Thermobaculum terrenum ATCC BAA-798] Length = 219 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 99/197 (50%), Gaps = 8/197 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKR 68 E + + VAG+DE GRGA AGPV A ++L P+ + DSK +S +R Sbjct: 16 FEPTLWRQGYAYVAGLDEAGRGAWAGPVFGAVVVLPPDLSTLESLAEVVRDSKVLSPNRR 75 Query: 69 EELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E YE I +SA+ I +++ ID I +AT A A+ + + L+ Sbjct: 76 ELAYEAIKASALYIGIGASTPDEIDTLGISRATELAWLRALRDADLPD--VLLIDAFKIR 133 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 A++ GD++ LSIAAAS++AKV RDR M + P + F H GY T +HQ Sbjct: 134 ACSINQVAIVDGDALCLSIAAASVVAKVLRDRYMADLTEYVPGFSFHKHKGYGTREHQAE 193 Query: 188 IKEKGPSCIHRLTFRPL 204 I G + HR +F P+ Sbjct: 194 IAIYGVTPQHRRSFAPI 210 >gi|219684853|ref|ZP_03539795.1| ribonuclease HII [Borrelia garinii PBr] gi|219685363|ref|ZP_03540182.1| ribonuclease HII [Borrelia garinii Far04] gi|219671798|gb|EED28853.1| ribonuclease HII [Borrelia garinii PBr] gi|219673136|gb|EED30156.1| ribonuclease HII [Borrelia garinii Far04] Length = 181 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 106/181 (58%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GPV+ AA++ N ++DSKK+ +KRE L I ++ + Sbjct: 1 MICGIDEVGRGCIFGPVLSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH ATL A+ A ENL++ +DG+ +P+ A+IKGDSI Sbjct: 61 AEISNIIIEKINIHNATLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+L+ K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLIDEYDKIYPLYLLRKNKGYPTKEHKNAIKKYGVLSLHRKNFKL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|126434540|ref|YP_001070231.1| ribonuclease HII [Mycobacterium sp. JLS] gi|166226627|sp|A3PXW3|RNH2_MYCSJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|126234340|gb|ABN97740.1| RNase HII [Mycobacterium sp. JLS] Length = 239 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 97/197 (49%), Gaps = 2/197 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK+ K+RE Sbjct: 19 TLESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERER 78 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L+ I A+ + ++ LP Sbjct: 79 LFPVIRRYALAYHVVFIPSGEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVPGLP 138 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + V+ GD+ + IAAAS++AKV+RDRLM +++P YGF H GY T H + E Sbjct: 139 MPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEREHPGYGFAEHKGYSTPAHTAALAE 198 Query: 191 KGPSCIHRLTFRPLRNL 207 GP HR +F +R L Sbjct: 199 LGPCAQHRYSFINVRRL 215 >gi|296273902|ref|YP_003656533.1| ribonuclease H [Arcobacter nitrofigilis DSM 7299] gi|296098076|gb|ADG94026.1| Ribonuclease H [Arcobacter nitrofigilis DSM 7299] Length = 178 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 6/177 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 GIDE GRG LAGP+ VA ++L N G+NDSKK+S K+RE+L+++I ++ I Sbjct: 3 CGIDEAGRGPLAGPLCVAGVVLK--NPIEGLNDSKKLSEKRREKLFDEIILNSYYHIVFT 60 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 S + +D+ + ++I ++N++ + E L + A D+ + Sbjct: 61 SAKTLDELGLSLCLKNSIEEIMQNVKANEYLMDGNTSFGIEGLKHEIKA----DANYEEV 116 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +AASI+AKV+RDR M +KYP+Y F+ H GY T H +IKE G S HR +F+ Sbjct: 117 SAASILAKVSRDRYMVEISQKYPNYLFEKHKGYGTKAHIDLIKEFGRSEEHRYSFKT 173 >gi|331269647|ref|YP_004396139.1| ribonuclease H [Clostridium botulinum BKT015925] gi|329126197|gb|AEB76142.1| ribonuclease H [Clostridium botulinum BKT015925] Length = 269 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 80/196 (40%), Positives = 109/196 (55%), Gaps = 8/196 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHK 66 ++ ++ N +AG DEVGRG LAGP+V AA+ILD + + INDSKKI + Sbjct: 68 YQFDSEYIVAN-EYLAGCDEVGRGPLAGPIVAAAVILDLEFANNDKLILKINDSKKIKPE 126 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 REEL E I AI ++ + ID I + + +V L+V P L DG I Sbjct: 127 LREELAEIIKEKAIAYCVAEIDNSEIDNKGIAWCNNEVLQRSVNGLKVKPDLVLSDGYKI 186 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + V+KGD+ S SIA ASIIAKV RD+LM+ + Y DY FD ++GY T +H Sbjct: 187 K-NCSIDNKFVVKGDAKSASIACASIIAKVYRDKLMQKYSEIYKDYAFDKNMGYGTKEHI 245 Query: 186 QVIKEKGPSCIHRLTF 201 IK+ G + IHR +F Sbjct: 246 DSIKKYGCTPIHRKSF 261 >gi|303327966|ref|ZP_07358405.1| ribonuclease HII [Desulfovibrio sp. 3_1_syn3] gi|302861792|gb|EFL84727.1| ribonuclease HII [Desulfovibrio sp. 3_1_syn3] Length = 230 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 77/195 (39%), Positives = 102/195 (52%), Gaps = 14/195 (7%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 PVAGIDE GRG LAGPVV AA+IL G+ DSK +S K R+ L +I A Sbjct: 23 GPVAGIDEAGRGCLAGPVVAAAVILPAVYELPGLTDSKALSAKARDILAPRIRECALAWG 82 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ---------- 132 + + I++ NI +AT +A+ AV L++ P LIDG + D Sbjct: 83 LGVVWPRRIERINILQATFEAMSRAVGVLRLTPGRLLIDGNKVLPDAVLTLFWRTGHTAP 142 Query: 133 ---AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AV+ GD I+AASI+AK RDRLM +++P YG + H GY T H ++ Sbjct: 143 PPLQQAVVGGDKSEDVISAASILAKTFRDRLMLHLGRRWPGYGLEEHKGYGTKAHYAALR 202 Query: 190 EKGPSCIHRLTFRPL 204 GP HRLTFR + Sbjct: 203 RLGPCPQHRLTFRGV 217 >gi|51598308|ref|YP_072496.1| ribonuclease HII [Borrelia garinii PBi] gi|73917600|sp|Q662W7|RNH2_BORGA RecName: Full=Ribonuclease HII; Short=RNase HII gi|51572879|gb|AAU06904.1| ribonuclease H [Borrelia garinii PBi] Length = 181 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 75/181 (41%), Positives = 106/181 (58%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GPV+ AA++ N ++DSKK+ +KRE L I ++ + Sbjct: 1 MICGIDEVGRGCIFGPVLSAAVVFKKKPNFIKELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH ATL A+ A ENL++ +DG+ +P+ A+IKGDSI Sbjct: 61 AEISNIIIEKINIHNATLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLRKNKGYPTKEHKNAIKKYGVLSLHRRNFKL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|258511350|ref|YP_003184784.1| Ribonuclease H [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478076|gb|ACV58395.1| Ribonuclease H [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 216 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 75/198 (37%), Positives = 109/198 (55%), Gaps = 6/198 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKR 68 + AG+DEVGRG +AGPVV A+++L + DSK++ R Sbjct: 7 RYRLDLALSGGCRTAGVDEVGRGCIAGPVVAASVVLPLERETYEELKDVMDSKQLKPDVR 66 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L ++I + A + I AS + ID+ NI +AT A+ +++ L + AL+DG Sbjct: 67 ERLADRIRAKALAVGIGMASPEEIDRLNILQATQLAMKRSLDALDIPVDLALVDGNRGFR 126 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 V+ GD+ SL +AAAS+IAKV RDRLM + +P YGF HVGY T H + Sbjct: 127 -HRVPVLPVVDGDARSLLVAAASVIAKVFRDRLMAKLDEGFPGYGFSEHVGYGTRAHLEA 185 Query: 188 IKEKGPSCIHRLTFRPLR 205 ++ GPS +HRL+F P+R Sbjct: 186 LRRLGPSVVHRLSFAPVR 203 >gi|282896399|ref|ZP_06304420.1| Ribonuclease HII/HIII [Raphidiopsis brookii D9] gi|281198687|gb|EFA73567.1| Ribonuclease HII/HIII [Raphidiopsis brookii D9] Length = 210 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 79/187 (42%), Positives = 107/187 (57%), Gaps = 5/187 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRGAL GPVV AA+IL + + I DSK++S R L ++I A Sbjct: 22 GWVAGVDEVGRGALFGPVVAAAVILPNSALSILVESKIKDSKQLSVSHRRYLAQQIAQLA 81 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I A+ ID+ NI +ATL A+ AV L+ P L+DG DL + A+I+ Sbjct: 82 VEWKIGYATTAEIDRLNILQATLLAMKRAVLKLKSQPSLCLVDGNQFIRDLLIEQQAIIQ 141 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD SL+IAAASI+AKV RD L+ KKY Y + GY + KH +++ G S +HR Sbjct: 142 GDRRSLNIAAASIMAKVWRDDLVVRLGKKYDMYDLHQNKGYGSQKHLLALQKHGASPLHR 201 Query: 199 LTFRPLR 205 +F P + Sbjct: 202 QSFSPCQ 208 >gi|325929586|ref|ZP_08190700.1| RNase HII [Xanthomonas perforans 91-118] gi|325540096|gb|EGD11724.1| RNase HII [Xanthomonas perforans 91-118] Length = 245 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 81/184 (44%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DE GRG LAGPV VAA++ DP G++DSK+++ ++RE+LY +I A Sbjct: 35 RLIAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYARIVDRALAW 94 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 95 SVVLIHSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 154 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 155 LDRAIMAASIVAKVTRDRLMYELHTRHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSF 214 Query: 202 RPLR 205 P+R Sbjct: 215 APVR 218 >gi|313773607|gb|EFS39573.1| ribonuclease HII [Propionibacterium acnes HL074PA1] Length = 204 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 73/196 (37%), Positives = 101/196 (51%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 3 HERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREAL 62 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S D+ + +A + + AV L V P L DG + L Sbjct: 63 FNVIMDKALAVSWVGVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGF-PVDGLT 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AA+ + A+V RDR+M + P Y F H GY TA HQ+ +KE Sbjct: 122 VPDLGMWKGDSVCACVAASPLAAQVARDRIMIAMDAEIPGYDFAVHKGYATALHQRRLKE 181 Query: 191 KGPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 182 LGPSRQHRMSYANVRR 197 >gi|325923964|ref|ZP_08185553.1| RNase HII [Xanthomonas gardneri ATCC 19865] gi|325545547|gb|EGD16812.1| RNase HII [Xanthomonas gardneri ATCC 19865] Length = 242 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 80/185 (43%), Positives = 117/185 (63%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DE GRG LAGPV VAA++ DP+ G++DSK+++ ++RE+ Y +I A Sbjct: 31 RLIAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQAYARIVERALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 91 SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 151 LDRAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYATPVHLAALQTHGPCPQHRRSF 210 Query: 202 RPLRN 206 P+R Sbjct: 211 APVRR 215 >gi|254523247|ref|ZP_05135302.1| ribonuclease HII [Stenotrophomonas sp. SKA14] gi|219720838|gb|EED39363.1| ribonuclease HII [Stenotrophomonas sp. SKA14] Length = 221 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 76/184 (41%), Positives = 112/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DE GRG LAGPV VAA++ DP+ G++DSK+++ +RE+L+++I A Sbjct: 24 RLIAGVDEAGRGPLAGPVAVAAVVFDPSRPRINGLDDSKQLTAARREQLHDRIIERALAW 83 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + ID+ NI++ATL + V + + A IDG +P+ L A A+I GD Sbjct: 84 HVVLVDVDTIDRLNIYQATLQGMREVVAAVAHVAGFARIDGNVVPKGLVLPAQALIGGDG 143 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I +I AASI+AKV+RDR M+ H ++P YGF+ H GY T H ++E GP HR +F Sbjct: 144 IDRAIMAASILAKVSRDRYMQDVHARHPQYGFEQHKGYGTPAHLAALREHGPCLEHRRSF 203 Query: 202 RPLR 205 P+R Sbjct: 204 APVR 207 >gi|261881041|ref|ZP_06007468.1| ribonuclease HII [Prevotella bergensis DSM 17361] gi|270332223|gb|EFA43009.1| ribonuclease HII [Prevotella bergensis DSM 17361] Length = 226 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 69/198 (34%), Positives = 99/198 (50%), Gaps = 23/198 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 AG DE GRG LAG V AA+IL + NDSK++S KKR L E+I A+ ++ Sbjct: 13 AGCDEAGRGCLAGSVFAAAVILPKDYDNPDFNDSKQLSKKKRYALREQIIRDAVAWAVGI 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC-------------- 131 + ID+ NI A+ A++ A++ L V P + +IDG P Sbjct: 73 VTPAEIDRINILHASFLAMHRAIDQLAVRPEALIIDGNRFDPYKPLSENATEGRKERVVT 132 Query: 132 --------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++KGD +IAAASI+AK RD M H +YP Y ++S+ GYPT Sbjct: 133 RPDDPAVLPWQCIVKGDGKYQNIAAASILAKTFRDDYMDELHLQYPMYHWNSNKGYPTRI 192 Query: 184 HQQVIKEKGPSCIHRLTF 201 H++ I G + HR ++ Sbjct: 193 HREAIARYGITPFHRKSY 210 >gi|218197065|gb|EEC79492.1| hypothetical protein OsI_20541 [Oryza sativa Indica Group] Length = 501 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 105/176 (59%), Gaps = 2/176 (1%) Query: 32 VGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQY 90 VGRG L G VV AA+ILDP G+ DSKK+S K+R LY++I + A S+ A Sbjct: 323 VGRGPLVGAVVTAAVILDPAQPIVGLADSKKLSEKRRLALYDEIVAKALSWSLGRAEPAE 382 Query: 91 IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150 ID+ NI AT+ A+ AV L + P LIDG P ++ AV+KGDS I+AAS Sbjct: 383 IDQLNILHATMLAMQRAVAGLHIAPDMVLIDGNRCPSLPM-RSQAVVKGDSRVAEISAAS 441 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 I+AKVTRDR M ++PDYGF H GYPTA H + + G + HR +F P++ Sbjct: 442 ILAKVTRDREMAELDSEFPDYGFAQHKGYPTAFHLERLAALGATEHHRRSFAPVKR 497 >gi|313836667|gb|EFS74381.1| ribonuclease HII [Propionibacterium acnes HL037PA2] gi|314928174|gb|EFS92005.1| ribonuclease HII [Propionibacterium acnes HL044PA1] gi|314972173|gb|EFT16270.1| ribonuclease HII [Propionibacterium acnes HL037PA3] Length = 204 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 74/196 (37%), Positives = 107/196 (54%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 3 HERALTRAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRITGLADSKTLSAAKREAL 62 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ I + A +S D+ + +A + + AV L + P L DG + L Sbjct: 63 FDVIINKALAVSWVRVEADECDRLGMQEADISGLRRAVARLGIEPGYVLSDGF-PVDGLT 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AAASI+AKV RDR+M ++ P Y F H GY TA H++ ++E Sbjct: 122 VPDLGMWKGDSVCACVAAASIVAKVVRDRIMIAMDREVPGYDFAVHKGYATALHRRRLEE 181 Query: 191 KGPSCIHRLTFRPLRN 206 GPSC HR+++ ++ Sbjct: 182 LGPSCQHRMSYANVQR 197 >gi|294625960|ref|ZP_06704572.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666389|ref|ZP_06731635.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599755|gb|EFF43880.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603831|gb|EFF47236.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 248 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 81/184 (44%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DE GRG LAGPV VAA++ DP G++DSK+++ ++RE+LY +I A Sbjct: 35 RLIAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYARIVDRALAW 94 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 95 SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 154 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 155 LDRAIMAASIVAKVTRDRLMHELHARHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSF 214 Query: 202 RPLR 205 P+R Sbjct: 215 APVR 218 >gi|54026116|ref|YP_120358.1| ribonuclease HII [Nocardia farcinica IFM 10152] gi|81373729|sp|Q5YS47|RNH2_NOCFA RecName: Full=Ribonuclease HII; Short=RNase HII gi|54017624|dbj|BAD58994.1| putative RNase HII [Nocardia farcinica IFM 10152] Length = 251 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 82/201 (40%), Positives = 113/201 (56%), Gaps = 5/201 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREE 70 LEA + + PVAG+DE GRG AGP+VVAA +L P + G++DSKK++ REE Sbjct: 21 TLEAALIRGGLGPVAGVDEAGRGPCAGPLVVAACLLAPKAYDRLAGLDDSKKLTEAAREE 80 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY IT A + ID IH A ++ + AV L+ P L DG +P L Sbjct: 81 LYPVITRLALAWEVVVIPAWEIDAIGIHVANIEGMRRAVAGLRQRPGYVLTDGFRVP-GL 139 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD+ + IAAASI+AKVTRDR+M ++P YGF +H GY T +H ++ Sbjct: 140 AAPSLPVIGGDAAAACIAAASILAKVTRDRIMVELDSRHPGYGFAAHKGYNTPEHTAALQ 199 Query: 190 EKGPSCIHRLTFRPLR-NLSV 209 GP HR ++R +R L + Sbjct: 200 RLGPCSEHRRSWRNVRERLGL 220 >gi|148243275|ref|YP_001228432.1| ribonuclease HII [Synechococcus sp. RCC307] gi|189043670|sp|A5GW20|RNH2_SYNR3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|147851585|emb|CAK29079.1| Ribonuclease HII [Synechococcus sp. RCC307] Length = 202 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 98/182 (53%), Gaps = 5/182 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA- 79 VAG+DEVGRG L GPV AA+IL G+ DSK +S K+R+ L +I S Sbjct: 2 IVAGVDEVGRGCLFGPVWAAAVILKAEAFDRLPALGVTDSKALSAKRRQALLPEIHSHCL 61 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + AS ID I AT A+ A++ L P L+DG P V+ G Sbjct: 62 SYGLGQASAACIDAVGIRAATELAMCRALQRLCHSPDHVLVDGSLPLRPWPGSQETVVAG 121 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS L+IA ASI+AK RD L++ +++P YG SH GY T H+ + + GP+ +HRL Sbjct: 122 DSHCLAIACASILAKEGRDALLQRLDQRWPGYGLASHKGYGTKAHRTALLQWGPTPLHRL 181 Query: 200 TF 201 +F Sbjct: 182 SF 183 >gi|152993838|ref|YP_001359559.1| ribonuclease HII [Sulfurovum sp. NBC37-1] gi|189043667|sp|A6QCJ3|RNH2_SULNB RecName: Full=Ribonuclease HII; Short=RNase HII gi|151425699|dbj|BAF73202.1| ribonuclease HII [Sulfurovum sp. NBC37-1] Length = 188 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 7/184 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 P+ GIDE GRG LAG +V+A ++L G+ DSKK++ K+RE LY + +A I Sbjct: 6 KPLCGIDEAGRGPLAGALVMAGVVLKK--PIDGLMDSKKLTEKRREALYTIVLENAEYHI 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S S + +D I K + L + + ++K D Sbjct: 64 VSFSAKEVDDLGISKCLQKGLQSIQNALDGCKYLFDGNSTFGVD----NVSTMVKADDKV 119 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 ++AASI+AKVTRDR M + YP+YGF+ H GY T H + + + IHR +FR Sbjct: 120 PEVSAASILAKVTRDREMIKMAEIYPEYGFEKHKGYGTKAHIEALMKYDRCEIHRRSFR- 178 Query: 204 LRNL 207 ++ L Sbjct: 179 VKGL 182 >gi|289662893|ref|ZP_06484474.1| ribonuclease HII [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 242 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 122/196 (62%), Gaps = 2/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREE 70 F ++ + + VAG+DE GRG LAGPV VAA++ DP+ G++DSK+++ ++RE+ Sbjct: 19 FFHDSRIPNPDSRLVAGVDEAGRGPLAGPVAVAAVVFDPSKPRINGLDDSKQLTAERREQ 78 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A S+ + ID+ NI++AT+ + AVE + + A IDG +P+ L Sbjct: 79 LYARIVDRALAWSVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGL 138 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC A A+I GD++ +I AASI+AKVTRDRLM H ++P Y FD H GY T H ++ Sbjct: 139 PCPAEALIGGDALDRAIMAASIVAKVTRDRLMHALHAQHPQYRFDQHKGYSTPVHLAALQ 198 Query: 190 EKGPSCIHRLTFRPLR 205 GP HR +F P+R Sbjct: 199 THGPCPQHRRSFAPVR 214 >gi|300780923|ref|ZP_07090777.1| ribonuclease H [Corynebacterium genitalium ATCC 33030] gi|300532630|gb|EFK53691.1| ribonuclease H [Corynebacterium genitalium ATCC 33030] Length = 215 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 2/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREE 70 E + + + PVAGIDE GRGA GPV +AA +L IP G+ DSKK++ KR Sbjct: 9 TYEVALSKAGLGPVAGIDEAGRGACFGPVTIAACVLPDKPIPALDGLTDSKKLTPAKRAS 68 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 LY+ I +S+ + + L Sbjct: 69 LYDAILTSSDAHCVVHIPAAEVDRRGIHNANLDGARLAVAGLGLAPGFTLVDAFRVPGLT 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GD + IAAAS++AKV+RDRL+ + +PDYG +SH GY TA H ++ Sbjct: 129 MPQLPIIGGDYTARCIAAASVLAKVSRDRLITKMAETFPDYGLESHKGYGTAAHMDAVRR 188 Query: 191 KGPSCIHRLTFRPL 204 G S HR T+ + Sbjct: 189 HGASAEHRYTYANV 202 >gi|284992383|ref|YP_003410937.1| Ribonuclease H [Geodermatophilus obscurus DSM 43160] gi|284065628|gb|ADB76566.1| Ribonuclease H [Geodermatophilus obscurus DSM 43160] Length = 257 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 94/205 (45%), Gaps = 4/205 (1%) Query: 4 NSIPERPH--FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGIND 59 S+ +RP +++E + + VAG DE GRGA AGP+V AA +L G+ D Sbjct: 19 TSVDDRPDALWDMERSLHRRGFPAVAGADEAGRGACAGPLVAAACVLPAGRRGRVPGLAD 78 Query: 60 SKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 SK ++ RE +YE++ A+ T + Sbjct: 79 SKLLTVAARERVYEEVVDRAVAWSVVLLPVADLDARGMHVTNIEALRRAVWALDPGADYV 138 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + L AV KGD I+ +AAAS++AKVTRDR+M H+++P+Y F H GY Sbjct: 139 LTDGFPVPGLARPTLAVWKGDRIAACVAAASVLAKVTRDRIMLDLHERWPEYDFAVHKGY 198 Query: 180 PTAKHQQVIKEKGPSCIHRLTFRPL 204 TA H ++ GP HR F + Sbjct: 199 STAAHDAALQRYGPCPEHRKRFVNV 223 >gi|167750814|ref|ZP_02422941.1| hypothetical protein EUBSIR_01796 [Eubacterium siraeum DSM 15702] gi|167656249|gb|EDS00379.1| hypothetical protein EUBSIR_01796 [Eubacterium siraeum DSM 15702] Length = 219 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 86/179 (48%), Positives = 111/179 (62%), Gaps = 2/179 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 + GIDE GRG LAG V AA+IL + I GINDSKK++ KKRE L++ I A+ Sbjct: 30 GVICGIDEAGRGPLAGDVYAAAVILPDDIIIDGINDSKKLTEKKREALFDIIREKAVSYC 89 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I++AS + ID NI A + A+ A + L V P +ALIDG L AV+KGD+ Sbjct: 90 IATASVEEIDSMNILNAAMLAMKRAYDGLDVKPDTALIDGNK-TPGLDIPETAVVKGDAT 148 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S SIAAASI+AKV RDR M+ +KYP Y F+ H GY T H +++ + G S IHR TF Sbjct: 149 SASIAAASILAKVARDRYMKELAEKYPQYMFEKHKGYGTKLHYEMLDKYGASDIHRKTF 207 >gi|58581586|ref|YP_200602.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae KACC10331] gi|75435665|sp|Q5H1F4|RNH2_XANOR RecName: Full=Ribonuclease HII; Short=RNase HII gi|58426180|gb|AAW75217.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae KACC10331] Length = 252 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPV VAA++ DPN G++DSK+++ ++RE+LY +I A S Sbjct: 42 LVAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALSWS 101 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 102 VVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDAL 161 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 162 DRAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFA 221 Query: 203 PLR 205 P+R Sbjct: 222 PVR 224 >gi|50365354|ref|YP_053779.1| ribonuclease HII, primer excision [Mesoplasma florum L1] gi|50363910|gb|AAT75895.1| Ribonuclease HII, primer excision [Mesoplasma florum L1] Length = 208 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 112/197 (56%), Gaps = 3/197 (1%) Query: 14 LEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 ++ +REK ++G DE GRGA+AGPVVVA++IL + I DSKK+S K+RE L Sbjct: 9 FDSQIREKYKTDFISGSDEAGRGAMAGPVVVASVILPKDYKNCLIRDSKKLSKKQRESLC 68 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E+I S AI +I +D N +A+ + ++ NL+ P LID Sbjct: 69 EEIKSVAISYAIEIIEADEVDILNPKQASRIGMTKSIMNLKPKPDLCLIDAE-NIIIQEY 127 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 IKGD +S SIAAASI+AK TRD +M K YP+Y F+SH GY +H + K Sbjct: 128 VCAPFIKGDDLSQSIAAASILAKTTRDNIMLDYAKIYPEYNFESHKGYCVKEHVEKTKML 187 Query: 192 GPSCIHRLTFRPLRNLS 208 G IHR T++P++++ Sbjct: 188 GVLPIHRKTYKPIKDIL 204 >gi|84623510|ref|YP_450882.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|97189477|sp|Q2P4B9|RNH2_XANOM RecName: Full=Ribonuclease HII; Short=RNase HII gi|84367450|dbj|BAE68608.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 246 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPV VAA++ DPN G++DSK+++ ++RE+LY +I A S Sbjct: 36 LVAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALAWS 95 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 96 VVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDAL 155 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 156 DRAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFA 215 Query: 203 PLR 205 P+R Sbjct: 216 PVR 218 >gi|261417089|ref|YP_003250772.1| Ribonuclease H [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373545|gb|ACX76290.1| Ribonuclease H [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326679|gb|ADL25880.1| ribonuclease HII [Fibrobacter succinogenes subsp. succinogenes S85] Length = 247 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 101/222 (45%), Gaps = 34/222 (15%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 +N V GIDEVGRG LAGPVV A +L + +NDSKK+S KRE +++ + Sbjct: 23 RKFAAENSAIVVGIDEVGRGPLAGPVVACAAVLKSPDALLTLNDSKKLSRPKREAMFDAV 82 Query: 76 TS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL--------------- 119 A +I+SAS + ID+ NI +A A+ A++ L + Sbjct: 83 KDACACYAIASASVEEIDEINILEADFLAMRRALQALGFPGLNESAPEIPIEVKGSLNDV 142 Query: 120 ------------------IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 I ++KGD SI+AASI+AKV RDR M Sbjct: 143 MPDSVPASALSSNVLIAVDGNLKIRGVPAENQMPIVKGDGRIASISAASILAKVFRDRYM 202 Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 + YP YGFD H GY T H I+ +G S HR +F P Sbjct: 203 DKLEELYPGYGFDKHAGYGTKAHLDAIRRQGFSPAHRKSFHP 244 >gi|58038820|ref|YP_190784.1| ribonuclease HII [Gluconobacter oxydans 621H] gi|81352528|sp|Q5FU18|RNH2_GLUOX RecName: Full=Ribonuclease HII; Short=RNase HII gi|58001234|gb|AAW60128.1| Ribonuclease HII [Gluconobacter oxydans 621H] Length = 207 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 87/203 (42%), Positives = 116/203 (57%), Gaps = 10/203 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHK 66 P + LEA V GIDEVGRG LAGPVV +A+ + ++DSKK++ + Sbjct: 2 PDYALEAAHG----GLVVGIDEVGRGPLAGPVVASAVAFTAPPSETLSSLLDDSKKLTAR 57 Query: 67 KREELYEKIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +R YE + A+I I +AS I++ NI +A A+ A+ L P AL+DG Sbjct: 58 RRMLAYEALMADEQALIGIGAASVAEIERINIAQACYLAMRRALSRLGCTPDLALVDG-K 116 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 LPC VI GD ISLSIAAASIIAKVTRDRLM ++ YG++ + GY TA H Sbjct: 117 HAPKLPCPIKMVIGGDGISLSIAAASIIAKVTRDRLMVRLAVRHDAYGWERNAGYGTAAH 176 Query: 185 QQVIKEKGPSCIHRLTFRPLRNL 207 Q +K +G + HR F P+RN+ Sbjct: 177 MQGLKLRGVTPHHRRGFAPIRNM 199 >gi|21242160|ref|NP_641742.1| ribonuclease HII [Xanthomonas axonopodis pv. citri str. 306] gi|39932428|sp|Q8PML9|RNH2_XANAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|21107575|gb|AAM36278.1| ribonuclease HII [Xanthomonas axonopodis pv. citri str. 306] Length = 244 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 81/184 (44%), Positives = 117/184 (63%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DE GRG LAGPV VAA++ DP G++DSK+++ ++RE+LY +I A Sbjct: 31 RLIAGVDEAGRGPLAGPVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYARIVDRALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD+ Sbjct: 91 SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 151 LDRAIMAASIVAKVTRDRLMHELHTRHPEYRFDQHKGYSTPVHLAALQTHGPCPQHRRSF 210 Query: 202 RPLR 205 P+R Sbjct: 211 APVR 214 >gi|187778966|ref|ZP_02995439.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC 15579] gi|187772591|gb|EDU36393.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC 15579] Length = 269 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 116/195 (59%), Gaps = 8/195 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 + + + +AG+DEVGRG LAGP+V AA++LD + I DSKK+S KK Sbjct: 73 YNFDRRYGNS--YLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMHRILNIKDSKKLSEKK 130 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL I AI +I+ ++ ID+ I + + + AVE L V P L DG ++ Sbjct: 131 REELDIIIREKAISYNIALVDNRTIDERGIAWSNNEVLKRAVEGLNVKPDLVLSDGYAVK 190 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +L + +IKGDS S+SIA+ASIIAKV RD +M+ K+ YGF+ + GY T +H Q Sbjct: 191 -NLNIRNEFIIKGDSKSVSIASASIIAKVYRDNMMKEYSKELSMYGFNHNAGYGTEEHIQ 249 Query: 187 VIKEKGPSCIHRLTF 201 IK+ G S IHR++F Sbjct: 250 AIKKYGTSKIHRMSF 264 >gi|166712746|ref|ZP_02243953.1| ribonuclease HII [Xanthomonas oryzae pv. oryzicola BLS256] Length = 251 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 117/183 (63%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPV VAA++ DPN G++DSK+++ ++RE LY +I A S Sbjct: 41 LVAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREHLYARIVDRALAWS 100 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 101 VVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDAL 160 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 161 DRTIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFA 220 Query: 203 PLR 205 P+R Sbjct: 221 PVR 223 >gi|108762969|ref|YP_630793.1| ribonuclease HII [Myxococcus xanthus DK 1622] gi|123247896|sp|Q1D980|RNH2_MYXXD RecName: Full=Ribonuclease HII; Short=RNase HII gi|108466849|gb|ABF92034.1| ribonuclease HII [Myxococcus xanthus DK 1622] Length = 293 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 87/196 (44%), Positives = 117/196 (59%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK-ISHKKREE 70 E + E+ +AG+DE G LAGPVV AA +L G++DSKK + +KRE Sbjct: 69 LRFETELWEQGHTHIAGVDEAGMAPLAGPVVAAAAVLPKGFRLKGLDDSKKILDAEKRES 128 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L E I A+ ++ A + ID+ NI+ A L A+ AVE L V P L+D R++P + Sbjct: 129 LAEAIKRDAVAWAVGRAEVEEIDRINIYHAGLLAMRRAVEGLSVKPDHLLVDARTVP-EC 187 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +IKGD++SLSIAAASI+AK TRDR M +YP YG +H GYPT H QV++ Sbjct: 188 SVPQKGIIKGDALSLSIAAASILAKTTRDRWMAELDDQYPGYGLAAHKGYPTPHHLQVLR 247 Query: 190 EKGPSCIHRLTFRPLR 205 EKG IHR +F P+R Sbjct: 248 EKGVLPIHRRSFAPVR 263 >gi|68536259|ref|YP_250964.1| ribonuclease HII [Corynebacterium jeikeium K411] gi|260578959|ref|ZP_05846862.1| ribonuclease HII [Corynebacterium jeikeium ATCC 43734] gi|97182389|sp|Q4JV11|RNH2_CORJK RecName: Full=Ribonuclease HII; Short=RNase HII gi|68263858|emb|CAI37346.1| rnhB [Corynebacterium jeikeium K411] gi|258602933|gb|EEW16207.1| ribonuclease HII [Corynebacterium jeikeium ATCC 43734] Length = 208 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 5/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHKKREE 70 +E + + PVAG+DE GRGA GP+ +AA IL + G++ DSKK++ K RE Sbjct: 1 MERELESAGLGPVAGVDEAGRGACCGPISIAACILPSDLDGVGLDRLTDSKKLTEKTRER 60 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY+ I A+ SI S + ID+ I A + + AV L V P L D +P L Sbjct: 61 LYDVIRDVAVSYSIIHISAEDIDRFGIQHANVSGMRRAVAALDVQPGYVLTDAVKVP-GL 119 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P V+KGD ++ I+AAS++AKV+RDR++R +++P YG SH GY T H + Sbjct: 120 PMPHLPVVKGDQMAKCISAASVLAKVSRDRVLRTLDEEFPGYGLASHKGYGTKAHMTAVS 179 Query: 190 EKGPSCIHRLTFRPL 204 G + HR +++ + Sbjct: 180 LHGGTPYHRYSYKNV 194 >gi|212703538|ref|ZP_03311666.1| hypothetical protein DESPIG_01583 [Desulfovibrio piger ATCC 29098] gi|212673038|gb|EEB33521.1| hypothetical protein DESPIG_01583 [Desulfovibrio piger ATCC 29098] Length = 211 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 75/194 (38%), Positives = 99/194 (51%), Gaps = 16/194 (8%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AGIDE GRG LAGPVV AA+IL G+ DSK +S +RE L I A + Sbjct: 2 AGIDEAGRGCLAGPVVAAAVILPEAYDLPGLTDSKALSAAQREHLAPLIRQCALAWGLGV 61 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC-------------- 131 ID+ NI +AT +A+ AV +L+ P L+DG + Sbjct: 62 VWPATIDRINILQATFEAMSRAVASLKRRPNLLLVDGNKTVPEPVLLPHWRKRHADATDL 121 Query: 132 -QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + AV+ GDS +I+AAS++AK RD LM + +P YGF H GY TA H + + Sbjct: 122 PRQNAVVGGDSSVPAISAASVLAKTYRDMLMEHLDRHHPGYGFARHKGYGTADHYEALHR 181 Query: 191 KGPSCIHRLTFRPL 204 GP HRLTFR + Sbjct: 182 LGPCRQHRLTFRGV 195 >gi|227833393|ref|YP_002835100.1| Ribonuclease HII [Corynebacterium aurimucosum ATCC 700975] gi|262184381|ref|ZP_06043802.1| ribonuclease HII [Corynebacterium aurimucosum ATCC 700975] gi|227454409|gb|ACP33162.1| Ribonuclease HII [Corynebacterium aurimucosum ATCC 700975] Length = 213 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 104/195 (53%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREE 70 E + + + PVAG+DE GRGA GPV +AA IL +P ++DSKK++ RE+ Sbjct: 9 TYEVALSKAGLGPVAGVDEAGRGACCGPVTIAACILPDRILPGLEWLDDSKKLTPAAREK 68 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I A S+ + ID I A L + AV L + P ++ L Sbjct: 69 LEPVIKRRALAWSVVHIGAKGIDAFGIQHANLSGMRRAVAQLGIRPGY-VLSDALFVPGL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +I GD+ + IAAAS++AKV+RDRLM K+YP Y ++H GY TA HQ+ I Sbjct: 128 PAPQLPIIGGDTAARCIAAASVLAKVSRDRLMADVAKQYPGYALETHKGYGTAVHQEAIA 187 Query: 190 EKGPSCIHRLTFRPL 204 G + HR+++R + Sbjct: 188 RLGATPEHRMSYRNV 202 >gi|320536890|ref|ZP_08036883.1| ribonuclease HII [Treponema phagedenis F0421] gi|320146273|gb|EFW37896.1| ribonuclease HII [Treponema phagedenis F0421] Length = 199 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 75/193 (38%), Positives = 91/193 (47%), Gaps = 13/193 (6%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRG LAGPV AA+IL P+ +NDSKK+S +KRE I + A+ Sbjct: 1 MTLICGIDEAGRGPLAGPVTAAAVILPPDFASTLLNDSKKLSPQKREACRALIQAQALFI 60 Query: 83 IS-SASHQYIDKHNIHKATLDAIYH------------AVENLQVIPRSALIDGRSIPEDL 129 A H ID NI +ATL A+ + Sbjct: 61 GEGRADHIEIDAINILQATLLAMKRAFDDLYQKVLTSECRAASIRIIVDGNKLPDFLNPS 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 A A K D+ + AASIIAK TRD M KKYP YG++ H GY TA H Q IK Sbjct: 121 IIAAAAEPKADAKYPEVMAASIIAKTTRDMEMLEWAKKYPQYGYEKHKGYCTAAHVQAIK 180 Query: 190 EKGPSCIHRLTFR 202 G S I R TF+ Sbjct: 181 NFGFSPIQRKTFK 193 >gi|154245214|ref|YP_001416172.1| ribonuclease HII [Xanthobacter autotrophicus Py2] gi|238686707|sp|A7IES2|RNH2_XANP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|154159299|gb|ABS66515.1| Ribonuclease H [Xanthobacter autotrophicus Py2] Length = 249 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 90/195 (46%), Positives = 123/195 (63%), Gaps = 1/195 (0%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 F E + PVAG DEVGRG LAGPVV AA++LDP +P G++DSKK++ KRE Sbjct: 39 DFTRERALYADGRAPVAGADEVGRGPLAGPVVAAAVVLDPARVPQGLDDSKKLTRAKRES 98 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 LY +I ++A ++I+ A + ID+ NI +ATL A+ +AV L P L+DG P + Sbjct: 99 LYLEICATAEVAIALAPPERIDRDNIRQATLWALANAVRGLPCRPAFLLVDGNDPPR-VD 157 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C+ A++ GD + SIAAASI+AKV RDRLM +P YGF+ H+GY T +H +K Sbjct: 158 CEVEAIVGGDGLVASIAAASIVAKVVRDRLMAGVGAAFPAYGFERHMGYGTREHGAALKA 217 Query: 191 KGPSCIHRLTFRPLR 205 GP HR +F P+R Sbjct: 218 HGPCLHHRRSFAPVR 232 >gi|256390717|ref|YP_003112281.1| ribonuclease H [Catenulispora acidiphila DSM 44928] gi|256356943|gb|ACU70440.1| Ribonuclease H [Catenulispora acidiphila DSM 44928] Length = 224 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 71/200 (35%), Positives = 109/200 (54%), Gaps = 4/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + E + VAG DE GRGA AGP+V AA+IL P G++DSK ++ + R+ Sbjct: 22 YGYERALARAGFAQVAGTDEAGRGACAGPLVAAAVILRPGASGRIPGLSDSKLLTERARD 81 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + +I A + + +D +H+A ++A+ +V L V P L DG + Sbjct: 82 RVRVEIEKRALSYAWVAIPAPEVDSRGLHQANIEALRRSVARLDVAPDYVLSDGFRVD-G 140 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 LPC + A+ KGD ++ +AAAS++AK RD +M +++P YGF+ H GY T HQ + Sbjct: 141 LPCPSLAMWKGDQVAACVAAASVLAKTVRDAMMTELAQRHPAYGFEIHKGYSTPAHQAAL 200 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 E GP HR T+ + N+S Sbjct: 201 TEHGPCPEHRFTYANVANVS 220 >gi|218295991|ref|ZP_03496771.1| Ribonuclease H [Thermus aquaticus Y51MC23] gi|218243729|gb|EED10257.1| Ribonuclease H [Thermus aquaticus Y51MC23] Length = 200 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 80/193 (41%), Positives = 110/193 (56%), Gaps = 6/193 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LEA + VAG+DE GRGA AGP+VV A+IL P PF DSK ++ K RE L E Sbjct: 4 LEAGFWALGLR-VAGVDEAGRGAWAGPIVVGAVILPPGRYPFK--DSKLLTPKAREALAE 60 Query: 74 KITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 ++ A+ + A + +D+ +++ATL A A+ L + P + + D +P P Sbjct: 61 EVRRVALAHALGLAEVEEVDRLGVYRATLLAAKRALSALALPPEALVTD--YLPLSTPLP 118 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A + D S S+AAASI+AKV RDRLM + YP YGF H GY T +HQ+ + G Sbjct: 119 LLAPPRADRESPSVAAASILAKVHRDRLMAELDRLYPGYGFAQHKGYGTPEHQEALLALG 178 Query: 193 PSCIHRLTFRPLR 205 PS +HR F P+R Sbjct: 179 PSPVHRRRFTPVR 191 >gi|149926572|ref|ZP_01914833.1| Ribonuclease H [Limnobacter sp. MED105] gi|149824935|gb|EDM84149.1| Ribonuclease H [Limnobacter sp. MED105] Length = 218 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 72/196 (36%), Positives = 110/196 (56%), Gaps = 6/196 (3%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 E++ V G+DE GRG L GPVV A +L+ N G+ SK +S KKR+ L I Sbjct: 11 QAYAEQHSLQVIGVDEAGRGPLCGPVVAGAALLNQPNTIDGLACSKTLSAKKRDSLETAI 70 Query: 76 TSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAV-----ENLQVIPRSALIDGRSIPEDL 129 +A ++ A+ + ID+ NI +A+L A++ AV + + + + Sbjct: 71 RRNAKACAVAHATVEEIDRLNILQASLLAMWRAVDLVLDQTGLKPKQCLIAVDGNKLPKW 130 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P QA AV+KGD+ +I+AASI+AKV RD + ++P Y D H+GYPTA+H ++ Sbjct: 131 PYQAIAVVKGDTKIPAISAASILAKVARDEWCKTHALQFPQYELDIHMGYPTARHMALLL 190 Query: 190 EKGPSCIHRLTFRPLR 205 E G + +HR +FRP+R Sbjct: 191 EHGATQLHRKSFRPVR 206 >gi|120403186|ref|YP_953015.1| ribonuclease HII [Mycobacterium vanbaalenii PYR-1] gi|166226631|sp|A1T759|RNH2_MYCVP RecName: Full=Ribonuclease HII; Short=RNase HII gi|119956004|gb|ABM13009.1| RNase HII [Mycobacterium vanbaalenii PYR-1] Length = 249 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 79/198 (39%), Positives = 113/198 (57%), Gaps = 4/198 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK++ +RE Sbjct: 19 TLESALYRAGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLNENERER 78 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A + Q +D+ +H A ++ + AV L + P L DG +P L Sbjct: 79 LFPLIRRYALAYHVVFIPSQEVDRRGVHVANIEGMRRAVAGLSLRPGYVLSDGFRVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + V+ GD+ + IAAAS++AKV+RDRLM ++P YGF H GY T H + Sbjct: 138 PMPSLPVVGGDAAAACIAAASVLAKVSRDRLMVAMEDEHPGYGFAEHKGYSTRAHSAALA 197 Query: 190 EKGPSCIHRLTFRPLRNL 207 GPS HR +F +R L Sbjct: 198 RLGPSSQHRYSFINVRRL 215 >gi|254785187|ref|YP_003072615.1| ribonuclease HII [Teredinibacter turnerae T7901] gi|237686020|gb|ACR13284.1| ribonuclease HII [Teredinibacter turnerae T7901] Length = 191 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 2/185 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAG VV AA++L N+ G+ DSKK+S KKRE L+ +I A I Sbjct: 2 IIAGVDEVGRGPLAGDVVAAAVVLGENHGIVGLADSKKLSEKKREALFVQIQQQAECFCI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + AS ID+ NI +A+L A+ AVE L++ P L+DG +P A A++KGDS Sbjct: 62 ARASVAEIDEINILQASLLAMKRAVEGLKIEPEHVLVDGNRLPR-WRYSAEAIVKGDSKV 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +I+AASI+AKVTRDR M +YP YGF H GYPT H + G + IHR ++ P Sbjct: 121 EAISAASILAKVTRDREMVAFEAQYPGYGFAGHKGYPTKLHMDALARLGVTPIHRTSYAP 180 Query: 204 LRNLS 208 ++ L Sbjct: 181 VKALL 185 >gi|223889172|ref|ZP_03623761.1| ribonuclease HII [Borrelia burgdorferi 64b] gi|223885421|gb|EEF56522.1| ribonuclease HII [Borrelia burgdorferi 64b] Length = 181 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ + ++DSKK+ +KRE L I ++ + Sbjct: 1 MICGIDEVGRGCIFGPILSAAVVFKKKPSFIKELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|188992332|ref|YP_001904342.1| ribonuclease HII [Xanthomonas campestris pv. campestris str. B100] gi|189043675|sp|B0RW80|RNH2_XANCB RecName: Full=Ribonuclease HII; Short=RNase HII gi|167734092|emb|CAP52298.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 240 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 82/185 (44%), Positives = 117/185 (63%), Gaps = 2/185 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELYEKITSSA-II 81 +AG+DE GRG LAGPV VAA++ DP G++DSK++S ++RE+LY +I A Sbjct: 31 RLIAGVDEAGRGPLAGPVAVAAVVFDPAKPRINGLDDSKQLSAERREQLYARIVDRALAW 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 S+ + ID+ NI++AT+ + AVE + + A IDG +P+ LP A A+I GD+ Sbjct: 91 SVVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPFPAEALIGGDA 150 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +I AASI+AKVTRDRLMR H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 151 LDRAIMAASIVAKVTRDRLMRELHAQHPEYRFDLHKGYSTPAHLAALQTHGPCPQHRRSF 210 Query: 202 RPLRN 206 P+R Sbjct: 211 APVRR 215 >gi|218249357|ref|YP_002374579.1| ribonuclease HII [Borrelia burgdorferi ZS7] gi|221217459|ref|ZP_03588930.1| ribonuclease HII [Borrelia burgdorferi 72a] gi|224533017|ref|ZP_03673623.1| ribonuclease HII [Borrelia burgdorferi WI91-23] gi|225549702|ref|ZP_03770667.1| ribonuclease HII [Borrelia burgdorferi 118a] gi|226320780|ref|ZP_03796336.1| ribonuclease HII [Borrelia burgdorferi 29805] gi|226322040|ref|ZP_03797565.1| ribonuclease HII [Borrelia burgdorferi Bol26] gi|226736816|sp|B7J0Y4|RNH2_BORBZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|218164545|gb|ACK74606.1| ribonuclease HII [Borrelia burgdorferi ZS7] gi|221192737|gb|EEE18953.1| ribonuclease HII [Borrelia burgdorferi 72a] gi|224512011|gb|EEF82406.1| ribonuclease HII [Borrelia burgdorferi WI91-23] gi|225369662|gb|EEG99110.1| ribonuclease HII [Borrelia burgdorferi 118a] gi|226232630|gb|EEH31384.1| ribonuclease HII [Borrelia burgdorferi Bol26] gi|226233835|gb|EEH32560.1| ribonuclease HII [Borrelia burgdorferi 29805] gi|312149652|gb|ADQ29723.1| ribonuclease HII [Borrelia burgdorferi N40] Length = 181 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ + ++DSKK+ +KRE L I ++ + Sbjct: 1 MICGIDEVGRGCIFGPILSAAVVFKKKPSFIKELDDSKKLKKEKREYLSSLILKNSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|332298244|ref|YP_004440166.1| Ribonuclease H [Treponema brennaborense DSM 12168] gi|332181347|gb|AEE17035.1| Ribonuclease H [Treponema brennaborense DSM 12168] Length = 197 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 68/191 (35%), Positives = 98/191 (51%), Gaps = 14/191 (7%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + G+DE GRG LAGPV A+IL P+ +NDSKK+S K+R L I A ++ Sbjct: 5 LICGLDEAGRGPLAGPVSAGAVILPPDFPVELLNDSKKLSEKRRAVLESLIKERACWGVA 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--------------SIPEDLP 130 H ID+ NI +A+L A+ A + ++ + + D+ Sbjct: 65 LVDHTVIDEINILQASLLAMKLAFDQMRQKLPAFCASRFGSCAQPLVSAIADGTFCPDIR 124 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A K D+ ++ AASI+AK RDR+M + YP YG++ H GYPT H+++ K Sbjct: 125 VPCVARPKADATESAVMAASILAKTERDRVMIAYGQLYPQYGYEKHKGYPTKAHRELCKL 184 Query: 191 KGPSCIHRLTF 201 GPS I RLTF Sbjct: 185 LGPSPIQRLTF 195 >gi|306842323|ref|ZP_07474982.1| ribonuclease HII [Brucella sp. BO2] gi|306287539|gb|EFM58998.1| ribonuclease HII [Brucella sp. BO2] Length = 220 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|307244425|ref|ZP_07526536.1| ribonuclease HII [Peptostreptococcus stomatis DSM 17678] gi|306492244|gb|EFM64286.1| ribonuclease HII [Peptostreptococcus stomatis DSM 17678] Length = 263 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 90/195 (46%), Positives = 119/195 (61%), Gaps = 4/195 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E + VAG+DEVGRG LAGPVV A ++L PN GINDSKK+S +KR+ LY+ Sbjct: 72 YENECYKNGAIFVAGLDEVGRGPLAGPVVAAVVVLKPNARIEGINDSKKLSEEKRDALYD 131 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I + A I A + ID+HNI AT A+ A+E L+V L D + Sbjct: 132 IIINEAIDYGIGMADNFEIDEHNILNATYIAMRRALEKLEVEVDCLLNDAVR-IPGVDIP 190 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +IKGD+ S+SIAAASI+AKVTRDR+M K+YP YGF S+ GY T+ H Q +++ G Sbjct: 191 QMPIIKGDAKSISIAAASIVAKVTRDRMMVDYDKEYPGYGFASNKGYGTSDHYQGLEKFG 250 Query: 193 PSCIHRLTFRPLRNL 207 + IHR +F L+NL Sbjct: 251 RTKIHRNSF--LKNL 263 >gi|157164148|ref|YP_001467724.1| ribonuclease HII [Campylobacter concisus 13826] gi|189043572|sp|A7ZG16|RNH2_CAMC1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|112800307|gb|EAT97651.1| ribonuclease HII [Campylobacter concisus 13826] Length = 184 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 96/176 (54%), Gaps = 7/176 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRGALAGP+ VAA +L+ G+NDSKK++ K+REEL++KIT S+ I+ Sbjct: 4 ICGIDEAGRGALAGPLSVAACVLNSE--ISGLNDSKKLTAKRREELFKKITKSSNFLIAY 61 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S+ ID+ + + A+ + + + D +IK D Sbjct: 62 FSNAQIDELGLSECLRRALKLFKAHFESFEIIYDGN-----LDYGVGITTMIKADGKVAG 116 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AASI+AKV+RDRLM K YP YGF H GY T H I + G S HR +F Sbjct: 117 VSAASILAKVSRDRLMNGWDKFYPAYGFAGHKGYGTKSHLDAIAKFGYSDFHRKSF 172 >gi|224533903|ref|ZP_03674488.1| ribonuclease HII [Borrelia burgdorferi CA-11.2a] gi|225549198|ref|ZP_03770171.1| ribonuclease HII [Borrelia burgdorferi 94a] gi|224512906|gb|EEF83272.1| ribonuclease HII [Borrelia burgdorferi CA-11.2a] gi|225370056|gb|EEG99496.1| ribonuclease HII [Borrelia burgdorferi 94a] Length = 181 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 106/181 (58%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ ++DSKK+ +KRE L I ++ + Sbjct: 1 MICGIDEVGRGCIFGPILSAAVVFKKKLGFIKELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|288573052|ref|ZP_06391409.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568793|gb|EFC90350.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002] Length = 194 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 100/181 (55%), Gaps = 6/181 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS-AII 81 AG+DE GRG +AGPVV AA IL G+ DSKK++ +RE+++ + I Sbjct: 8 AGVDEAGRGPMAGPVVAAAAILTEEQSERLVSAGLRDSKKMTPLRREKVFSLMGELGVIW 67 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PRSALIDGRSIPEDLPCQAFAVIKGD 140 + +AS + IDK NI +ATL A+ +VE L L+DG DL GD Sbjct: 68 AAQAASVERIDKINILRATLWAMRRSVERLPSRLFDGVLVDGDKEIPDLIWPQRVCPHGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + I+AAS++AKV RDR M + YP YGF SH GY T H+ ++ GPS IHR + Sbjct: 128 DVYPQISAASVVAKVLRDRAMVALDRLYPAYGFASHKGYGTKAHRNALEAMGPSPIHRKS 187 Query: 201 F 201 F Sbjct: 188 F 188 >gi|319779558|ref|YP_004130471.1| Ribonuclease HII [Taylorella equigenitalis MCE9] gi|317109582|gb|ADU92328.1| Ribonuclease HII [Taylorella equigenitalis MCE9] Length = 212 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 70/204 (34%), Positives = 105/204 (51%), Gaps = 21/204 (10%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS-SAIIS 82 V G+DE GRG LAG V A++L + G+ DSKK+S KKREEL I S Sbjct: 4 KLVIGVDEAGRGPLAGDVFAGAVLLG-SPEIVGLTDSKKLSPKKREELEVLIKGASVSYF 62 Query: 83 ISSASHQYIDKHNIHKATLDAIYH-------------------AVENLQVIPRSALIDGR 123 ++ ++ + ID NI ATL A+ + + IP +G Sbjct: 63 VACSTVEEIDSLNILNATLLAMNRAIDGVLGALPPKYQSSQIKVIIDGNQIPNPLKREGI 122 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + + + IKGD ++ +++AASI+AK RDR + H+ P Y F+ H GY TA Sbjct: 123 FDYQGFKIEVKSQIKGDLLTPTVSAASILAKTARDRHILQLHESVPQYKFNEHKGYGTAL 182 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H ++I++ GPS HR +F P+++L Sbjct: 183 HLEMIRKYGPSIFHRKSFNPVKSL 206 >gi|226305946|ref|YP_002765906.1| ribonuclease HII [Rhodococcus erythropolis PR4] gi|259494071|sp|C0ZXT2|RNH2_RHOE4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|226185063|dbj|BAH33167.1| putative ribonuclease HII [Rhodococcus erythropolis PR4] Length = 226 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 76/195 (38%), Positives = 109/195 (55%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREE 70 +E+ + + PVAG+DE GRGA AGP+V+AA +L P ++DSKK++ + REE Sbjct: 18 TMESALARTGLGPVAGVDEAGRGACAGPLVIAACVLAPKPQAALARLDDSKKLTERAREE 77 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A S+ S +D+ IH A ++ + AV L + P L DG +P L Sbjct: 78 LFPAIKRLALAWSVVSVPAAEVDQIGIHVANIEGMRRAVAGLDLEPGYVLTDGFRVP-GL 136 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD + IAAAS++AKVTRDR+M + +P YGF H GY T H + Sbjct: 137 TAPSLPVIGGDGAAACIAAASVLAKVTRDRVMTEMDETHPGYGFAIHKGYSTPLHMDALD 196 Query: 190 EKGPSCIHRLTFRPL 204 E GP HR+T+ + Sbjct: 197 ELGPCPEHRMTYANV 211 >gi|15594392|ref|NP_212180.1| ribonuclease HII [Borrelia burgdorferi B31] gi|195941785|ref|ZP_03087167.1| ribonuclease H (rnhB) [Borrelia burgdorferi 80a] gi|216264713|ref|ZP_03436705.1| ribonuclease HII [Borrelia burgdorferi 156a] gi|7227916|sp|O51075|RNH2_BORBU RecName: Full=Ribonuclease HII; Short=RNase HII gi|2687927|gb|AAC66435.1| ribonuclease H (rnhB) [Borrelia burgdorferi B31] gi|215981186|gb|EEC21993.1| ribonuclease HII [Borrelia burgdorferi 156a] gi|312148276|gb|ADQ30935.1| ribonuclease HII [Borrelia burgdorferi JD1] Length = 181 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ + ++DSKK+ +KRE L I ++ + Sbjct: 1 MICGIDEVGRGCIFGPILSAAVVFKKKPSFIKELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDKYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|34580789|ref|ZP_00142269.1| ribonuclease HII [Rickettsia sibirica 246] gi|28262174|gb|EAA25678.1| ribonuclease HII [Rickettsia sibirica 246] Length = 193 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 90/193 (46%), Positives = 116/193 (60%), Gaps = 5/193 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE L Sbjct: 6 LHFEKKYHN---CIVAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + + + SH ID NI +AT A AV NL + P L+DG +D Sbjct: 63 YEQITSNYVWATAIISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE-- 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++I GD++SLSIAAASI+AKVTRDRLM ++P Y + + GY T +H + I Sbjct: 121 RFVSIINGDNLSLSIAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIH 180 Query: 192 GPSCIHRLTFRPL 204 G S HR +FR Sbjct: 181 GLSPYHRRSFRGC 193 >gi|188577177|ref|YP_001914106.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521629|gb|ACD59574.1| ribonuclease HII [Xanthomonas oryzae pv. oryzae PXO99A] Length = 211 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 83/183 (45%), Positives = 118/183 (64%), Gaps = 2/183 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-IIS 82 VAG+DE GRG LAGPV VAA++ DPN G++DSK+++ ++RE+LY +I A S Sbjct: 1 MVAGVDEAGRGPLAGPVAVAAVVFDPNKPRINGLDDSKQLTAERREQLYARIVDRALSWS 60 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + ID+ NI++AT+ + AVE + + A IDG +P+ LPC A A+I GD++ Sbjct: 61 VVLIDSEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALIGGDAL 120 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I AASI+AKVTRDRLM H ++P+Y FD H GY T H ++ GP HR +F Sbjct: 121 DRAIMAASIVAKVTRDRLMHELHAQHPEYRFDQHKGYSTPMHLAALQTHGPCPQHRRSFA 180 Query: 203 PLR 205 P+R Sbjct: 181 PVR 183 >gi|91205326|ref|YP_537681.1| ribonuclease HII [Rickettsia bellii RML369-C] gi|157826929|ref|YP_001495993.1| ribonuclease HII [Rickettsia bellii OSU 85-389] gi|122425777|sp|Q1RJ72|RNH2_RICBR RecName: Full=Ribonuclease HII; Short=RNase HII gi|166226647|sp|A8GVS9|RNH2_RICB8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|91068870|gb|ABE04592.1| Ribonuclease HII [Rickettsia bellii RML369-C] gi|157802233|gb|ABV78956.1| ribonuclease HII [Rickettsia bellii OSU 85-389] Length = 196 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 96/190 (50%), Positives = 118/190 (62%), Gaps = 5/190 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + +AGIDE GRG LAGPVV AA+I+D NNI GI DSKK+S KKRE L Sbjct: 6 LHFEKKYPN---FILAGIDEAGRGPLAGPVVAAAVIVDQNNIIAGIKDSKKLSKKKRELL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+IT++ I + SH IDK NI +AT A A ENL P L+DG D Sbjct: 63 YEQITANYIWATGIISHTEIDKINILEATKKACILAAENLSTKPEIVLVDGNMQFSDK-- 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++I GD++SLSIAAASIIAKVTRDRLM ++P Y + + GY T +H Q IKE Sbjct: 121 RFISIINGDNLSLSIAAASIIAKVTRDRLMLELSNEFPQYLWHKNSGYGTKEHAQAIKEY 180 Query: 192 GPSCIHRLTF 201 G S HRL+F Sbjct: 181 GLSPYHRLSF 190 >gi|302335674|ref|YP_003800881.1| RNase HII [Olsenella uli DSM 7084] gi|301319514|gb|ADK68001.1| RNase HII [Olsenella uli DSM 7084] Length = 259 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 70/191 (36%), Positives = 99/191 (51%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + LE + + + G+DEVGRGALAGP+ A+ L I +G+NDSK++S +R L Sbjct: 62 YALERELGGEG--VIVGVDEVGRGALAGPLTACAVALPGEPIIWGLNDSKQLSPARRGAL 119 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I AI I ++ ID + A A+ A+ + V LIDG + Sbjct: 120 GATIAEHAIAIGVAHVEPASIDAVGMSVALRMAMGQAIADAGVDADCVLIDGNPVHVHP- 178 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 Q A++KGD+ IAAASI+AKVTRD LM +YP Y GY + H I+ Sbjct: 179 -QERALVKGDARVACIAAASIVAKVTRDSLMVAYDSEYPGYHLAECKGYGSPAHIDAIRR 237 Query: 191 KGPSCIHRLTF 201 G + IHR++F Sbjct: 238 LGLTPIHRVSF 248 >gi|225552167|ref|ZP_03773107.1| ribonuclease HII [Borrelia sp. SV1] gi|225371165|gb|EEH00595.1| ribonuclease HII [Borrelia sp. SV1] Length = 181 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ + ++DSKK+ +KRE L I ++ + Sbjct: 1 MICGIDEVGRGCIFGPILSAAVVFKKKTSFINELDDSKKLKKEKREYLSSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ L+DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKFVPKITAKNVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|67459453|ref|YP_247077.1| ribonuclease HII [Rickettsia felis URRWXCal2] gi|73917830|sp|Q4UKL5|RNH2_RICFE RecName: Full=Ribonuclease HII; Short=RNase HII gi|67004986|gb|AAY61912.1| Ribonuclease HII [Rickettsia felis URRWXCal2] Length = 193 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 88/191 (46%), Positives = 117/191 (61%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE L Sbjct: 6 LHFEKKYHN---YIVAGIDEAGRGPLAGPVVASAVIIDNTNIIPGIKDSKKLSKKKRELL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + + + SH ID+ NI +AT A A NL + P L+DG +D Sbjct: 63 YEQITSNYVWAAAIISHIEIDEINILEATKKACSIAAANLSLKPEIVLVDGNMPFKDK-- 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++I GD++SLSIAAASI+AKVTRDRLM ++P Y + + GY T +H + I Sbjct: 121 RFVSMINGDNLSLSIAAASIVAKVTRDRLMLDLSTEFPQYLWHKNSGYGTKEHIEAINMH 180 Query: 192 GPSCIHRLTFR 202 G S HR +F+ Sbjct: 181 GLSPYHRRSFK 191 >gi|302338381|ref|YP_003803587.1| ribonuclease H [Spirochaeta smaragdinae DSM 11293] gi|301635566|gb|ADK80993.1| Ribonuclease H [Spirochaeta smaragdinae DSM 11293] Length = 190 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 97/180 (53%), Gaps = 4/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 GIDE GRG LAGPV AA+IL ++DSKK+S KR ++I SS + Sbjct: 7 CGIDEAGRGPLAGPVTAAAVILPAAFPVGLLDDSKKLSPAKRNIALKEILSSCSYGVGWV 66 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVI----PRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + ID+ NIH A+L A+ A E + + +DG+ P+ + A+I+GD Sbjct: 67 WPEEIDRINIHNASLLAMKRAFEAIDQKARTLVQIVQVDGKFPPKLDHPRIEAIIRGDQT 126 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I AASI+AK RDR M P + F+ H GYPT H+++ ++ G S IHR +FR Sbjct: 127 HPHIQAASILAKEARDRWMIRYSWIEPAWHFERHKGYPTKLHRELCRQYGLSEIHRKSFR 186 >gi|254718570|ref|ZP_05180381.1| ribonuclease HII [Brucella sp. 83/13] gi|265983545|ref|ZP_06096280.1| ribonuclease HII [Brucella sp. 83/13] gi|264662137|gb|EEZ32398.1| ribonuclease HII [Brucella sp. 83/13] Length = 220 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGSKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILAKAIAVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|84498367|ref|ZP_00997164.1| ribonuclease HII [Janibacter sp. HTCC2649] gi|84381867|gb|EAP97750.1| ribonuclease HII [Janibacter sp. HTCC2649] Length = 261 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 18/212 (8%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHK 66 +P +E ++ +AG+DEVGRGALAGPV V +++D P G+ DSK + Sbjct: 9 KPSLRVERALQRDGYRLLAGMDEVGRGALAGPVSVGVVVIDETCRSAPQGVRDSKLLQPS 68 Query: 67 KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 RE + +I A + AS ID+ I A A A+ +L V+P ++DG Sbjct: 69 ARELMVPRIRRWAFAHAVGHASPAEIDEVGIIAALRLAGRRALASLDVVPDLVILDGNHD 128 Query: 126 P---------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + +IK D S+A+AS++AKV RDR+M + Sbjct: 129 WLTAPDEVGLLAFTSDDVHTPPVTTMIKADMKCSSVASASVLAKVERDRMMVDLAPDHAA 188 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 Y ++ + GY +H ++E GP+ +HR ++R Sbjct: 189 YRWELNKGYAAPEHMDALREHGPTELHRRSWR 220 >gi|256827134|ref|YP_003151093.1| ribonuclease HII [Cryptobacterium curtum DSM 15641] gi|256583277|gb|ACU94411.1| ribonuclease HII [Cryptobacterium curtum DSM 15641] Length = 262 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 66/192 (34%), Positives = 99/192 (51%), Gaps = 4/192 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + L+A + + G+DEVGRG LAGP+ VAA++L +NDSK++S +REE+ Sbjct: 63 YTLQAQAADGGVS--VGLDEVGRGPLAGPLTVAAVVLPEAPHIAHLNDSKQLSASRREEV 120 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + AI S+ + + ID + A AV ++ + + Sbjct: 121 AAAVKDVAIAWSVQHIAPEDIDDAGMSACLRRAFGRAVAAVETAGVAIDVVLLDGNPLHF 180 Query: 131 -CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + IKGD+ IAAAS++AKV RD LM A + YP YGFD + GY +A+H IK Sbjct: 181 DVRERTFIKGDARLACIAAASVVAKVERDELMTQAAQTYPVYGFDRNKGYGSAEHIAAIK 240 Query: 190 EKGPSCIHRLTF 201 + G +HR +F Sbjct: 241 KYGLCPLHRRSF 252 >gi|307297954|ref|ZP_07577758.1| Ribonuclease H [Thermotogales bacterium mesG1.Ag.4.2] gi|306916040|gb|EFN46423.1| Ribonuclease H [Thermotogales bacterium mesG1.Ag.4.2] Length = 241 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 4/191 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + +AG+DE GRG LAGPVV AA+I+ N G+ DSK + K RE L+ +I Sbjct: 23 AAYRADHRVIAGVDEAGRGPLAGPVVAAAVIV--LNPVDGVYDSKALCRKTRELLFGQIL 80 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 ++I+ I S + +D N+ AT A+ A+ L P ++DG+S+ D + Sbjct: 81 ENSIVGIGLCSPEEVDILNVFAATRLAMNRALRILSRKPDYVIVDGKSLRLD--ISGECI 138 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD S +IA+ASI+AKV RDR+M YP+YG+ +H GY T H + +++ GP+ Sbjct: 139 VGGDRRSAAIASASIVAKVFRDRIMDSLDILYPEYGYRNHKGYCTDMHLRALRKYGPTTW 198 Query: 197 HRLTFRPLRNL 207 HRLTFRP+R L Sbjct: 199 HRLTFRPVREL 209 >gi|229491398|ref|ZP_04385222.1| ribonuclease HII [Rhodococcus erythropolis SK121] gi|229321683|gb|EEN87480.1| ribonuclease HII [Rhodococcus erythropolis SK121] Length = 226 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 76/195 (38%), Positives = 109/195 (55%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREE 70 +E+ + + PVAG+DE GRGA AGP+V+AA +L P ++DSKK++ + REE Sbjct: 18 TMESALARTGLGPVAGVDEAGRGACAGPLVIAACVLAPKPQAALARLDDSKKLTERAREE 77 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A S+ S +D+ IH A ++ + AV +L + P L DG +P L Sbjct: 78 LFPAIKRLALAWSVISVPAAEVDQIGIHVANIEGMRRAVASLDLEPGYVLTDGFRVP-GL 136 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD + IAAAS++AKVTRDR+M +P YGF H GY T H + Sbjct: 137 TAPSLPVIGGDGAAACIAAASVLAKVTRDRVMTEMDDTHPGYGFAIHKGYSTPLHMDALD 196 Query: 190 EKGPSCIHRLTFRPL 204 E GP HR+T+ + Sbjct: 197 ELGPCPEHRMTYANV 211 >gi|291288314|ref|YP_003505130.1| Ribonuclease H [Denitrovibrio acetiphilus DSM 12809] gi|290885474|gb|ADD69174.1| Ribonuclease H [Denitrovibrio acetiphilus DSM 12809] Length = 184 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 70/178 (39%), Positives = 99/178 (55%), Gaps = 2/178 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 + GIDEVGRG LAGPVV A++L N + DSKKIS KKR+ + + ++AI I Sbjct: 2 LIVGIDEVGRGCLAGPVVAGAVLLPENFSDERLVDSKKISEKKRKIMDGVVRANAIAFGI 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S++ ID++ I T A+ A+E + V ++D E + K + Sbjct: 62 GAVSNEDIDRYGIVPCTKKAMMLALEQISVSYDKVIVDAVK-LEGVKVPLEHPFKAEDKF 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +AAASIIAKV RD LM H +PDYG+ S+ GY H + IKE G + +HR +F Sbjct: 121 QCVAAASIIAKVYRDALMTKLHINHPDYGWYSNKGYGAKVHIEKIKEIGLTPLHRRSF 178 >gi|254693174|ref|ZP_05155002.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya] gi|261213414|ref|ZP_05927695.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya] gi|260915021|gb|EEX81882.1| ribonuclease HII [Brucella abortus bv. 3 str. Tulya] Length = 220 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 96/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD +SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRCVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|169830848|ref|YP_001716830.1| ribonuclease HII [Candidatus Desulforudis audaxviator MP104C] gi|169637692|gb|ACA59198.1| Ribonuclease H [Candidatus Desulforudis audaxviator MP104C] Length = 267 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 78/191 (40%), Positives = 109/191 (57%), Gaps = 1/191 (0%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + E + PVAG DE GRG LAGPVV AA++L + DSK+++ R L Sbjct: 65 YGYERALEAAGCGPVAGTDEAGRGPLAGPVVAAAVVLSRGAAIPELKDSKQLTGPARSRL 124 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++I + I A I + NI +A+L A+ A++ L IP L+DG P Sbjct: 125 ADEIRARCHAWGIGVADVGEIARLNILRASLLAMRRALDGLGFIPGWVLVDGSFTVPLFP 184 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 A++KGD +S S+AAASI+AKV RD LM H+ YP+YGFD H GYPT +H Q ++ Sbjct: 185 GPQTALVKGDRVSASVAAASILAKVYRDELMERLHRLYPEYGFDRHKGYPTPEHYQALER 244 Query: 191 KGPSCIHRLTF 201 GP +HR++F Sbjct: 245 YGPCPLHRVSF 255 >gi|194365030|ref|YP_002027640.1| Ribonuclease H [Stenotrophomonas maltophilia R551-3] gi|194347834|gb|ACF50957.1| Ribonuclease H [Stenotrophomonas maltophilia R551-3] Length = 224 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 76/184 (41%), Positives = 110/184 (59%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-II 81 VAG+DE GRG LAGPV VAA++ DP G++DSK+++ +RE+L+++I A Sbjct: 24 RLVAGVDEAGRGPLAGPVAVAAVVFDPARPRINGLDDSKQLTAARREQLHDRIIERALAW 83 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + ID+ NI++ATL + V + + A IDG +P+ L A A++ GD Sbjct: 84 HVVLVDVDTIDRLNIYQATLQGMRDVVAAVAHVAGFARIDGNVVPKGLVLPAQALVGGDG 143 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I +I AASI+AKV+RDR M H ++P YGF+ H GY T H ++E GP HR +F Sbjct: 144 IDRAIMAASILAKVSRDRYMLDVHSRHPQYGFEQHKGYGTPAHLAALREHGPCVEHRRSF 203 Query: 202 RPLR 205 P+R Sbjct: 204 APVR 207 >gi|163842670|ref|YP_001627074.1| ribonuclease HII [Brucella suis ATCC 23445] gi|189043569|sp|B0CK74|RNH2_BRUSI RecName: Full=Ribonuclease HII; Short=RNase HII gi|163673393|gb|ABY37504.1| Ribonuclease HII [Brucella suis ATCC 23445] Length = 220 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 98/203 (48%), Positives = 138/203 (67%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +IHKA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILTKAITVSVASLSARSIDASDIHKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|306836387|ref|ZP_07469365.1| ribonuclease HII [Corynebacterium accolens ATCC 49726] gi|304567747|gb|EFM43334.1| ribonuclease HII [Corynebacterium accolens ATCC 49726] Length = 213 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREE 70 E + + PVAG+DE GRGA GP+ +AA IL + DSKK++ ++RE+ Sbjct: 9 TFEVALARAGLGPVAGVDEAGRGACCGPITIAACILPERIVGELDTLTDSKKLTPRQREK 68 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A S+ IDK I A + AV L+ P ++ L Sbjct: 69 LFPIIKDKAVDWSVVHIGAGDIDKRGIQHANTSGMRRAVARLEQRPGY-VLSDALFIPGL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++ GD+ + IAAAS++AKV+RD LM +++P YG H GY T H+ I Sbjct: 128 TQPHLPIVGGDAAARCIAAASVLAKVSRDHLMLDLDERFPGYGLAGHKGYGTKAHEAAIA 187 Query: 190 EKGPSCIHRLTFRPLRN 206 G S HR+++ ++ Sbjct: 188 ALGASPEHRMSYSNVQR 204 >gi|75676782|ref|YP_319203.1| ribonuclease HII/HIII [Nitrobacter winogradskyi Nb-255] gi|97189098|sp|Q3SPE0|RNH2_NITWN RecName: Full=Ribonuclease HII; Short=RNase HII gi|74421652|gb|ABA05851.1| RNase HII [Nitrobacter winogradskyi Nb-255] Length = 258 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 1/195 (0%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P F E + E +WPVAG DEVGRG LAGPVV AA++LDPN+IP GI+DSK+++ +RE Sbjct: 34 PSFMRERDLMECGVWPVAGCDEVGRGPLAGPVVAAAVVLDPNHIPKGIDDSKRLTAARRE 93 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 EL+E+I ++A +++ A + ID+ NI +A+L A+ AV L P+ +DGR D+ Sbjct: 94 ELFEEIVATASFAVACAPIERIDRDNILRASLWALARAVHALPDTPKHVFVDGRD-RIDI 152 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C VI GD + LSIAAASI+AKVTRDRLM + P YGF++H GY H + + Sbjct: 153 ACACEPVIGGDGLVLSIAAASIVAKVTRDRLMCKLARDCPGYGFETHKGYAVPGHLEALG 212 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR F P+ Sbjct: 213 RLGPSSHHRSFFAPV 227 >gi|332295819|ref|YP_004437742.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796] gi|332178922|gb|AEE14611.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796] Length = 210 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 77/175 (44%), Positives = 101/175 (57%), Gaps = 1/175 (0%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-ISSA 86 G+DEVGRGALAGP+VV A+ D + + G+ DSK + ++R EL + I A I A Sbjct: 24 GMDEVGRGALAGPLVVGAVYFDKDYMIDGLKDSKLLKDQERRELCDIIKRKASYWSIGWA 83 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 H IDK NI+ A + A A+ N+ +P + DG + P + K D + S+ Sbjct: 84 YHWEIDKLNIYSALVLACKRAILNMNFLPEAIFFDGSLKLKTFPFKHIVFPKADRLVPSV 143 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AAASIIAKV RD M K YPDY FD H GY T H +V+++KG S IHR TF Sbjct: 144 AAASIIAKVARDDYMINISKYYPDYLFDIHKGYGTKFHLEVLEKKGLSKIHRKTF 198 >gi|223998909|ref|XP_002289127.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220974335|gb|EED92664.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 183 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 89/185 (48%), Positives = 117/185 (63%), Gaps = 7/185 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK-REELYEKITSSA--IIS 82 V G+DE GRG LAGPVV AA I+ N G+ DSKKI+ ++ RE LYE++ SS + Sbjct: 1 VVGVDEAGRGPLAGPVVAAAAIVPTN--IEGVIDSKKITKEEDRERLYEELVSSPGIRYA 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVI--PRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ S Q ID+ NI +ATL+ + AV+ + + ALIDG IP+D+PC + ++ KGD Sbjct: 59 VAIVSAQRIDEINILQATLEGMRMAVQGVMDMDSYYFALIDGNKIPKDMPCSSESITKGD 118 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SI AASIIAKVTRDRLM KYP+Y H GYPT H +++ G S IHR T Sbjct: 119 GREYSIGAASIIAKVTRDRLMHEYDAKYPEYNLKQHKGYPTVAHMSAVRKHGASLIHRRT 178 Query: 201 FRPLR 205 F PL+ Sbjct: 179 FAPLK 183 >gi|227503370|ref|ZP_03933419.1| ribonuclease HII [Corynebacterium accolens ATCC 49725] gi|227075873|gb|EEI13836.1| ribonuclease HII [Corynebacterium accolens ATCC 49725] Length = 213 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREE 70 E + + + PVAG+DE GRGA GP+ +AA IL + DSKK++ ++RE+ Sbjct: 9 TFEVALAKAGLGPVAGVDEAGRGACCGPITIAACILPERIVGELDTLTDSKKLTPRQREK 68 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A S+ IDK I A + AV L+ P ++ L Sbjct: 69 LFPIIKDKAVDWSVVHIGAGDIDKRGIQHANTSGMRRAVARLEQRPGY-VLSDALFIPGL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++ GD+ + IAAAS++AKV+RD LM +++P YG H GY T H+ I Sbjct: 128 TQPHLPIVGGDAAARCIAAASVLAKVSRDHLMLDLDERFPGYGLAGHKGYGTKAHEAAIA 187 Query: 190 EKGPSCIHRLTFRPLRN 206 G S HR+++ ++ Sbjct: 188 ALGASPEHRMSYSNVQR 204 >gi|15892187|ref|NP_359901.1| ribonuclease HII [Rickettsia conorii str. Malish 7] gi|20139552|sp|Q92J05|RNH2_RICCN RecName: Full=Ribonuclease HII; Short=RNase HII gi|15619319|gb|AAL02802.1| ribonuclease HII [Rickettsia conorii str. Malish 7] Length = 193 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 90/191 (47%), Positives = 116/191 (60%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE L Sbjct: 6 LHFEKKYHN---CIVAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + + + SH ID NI +AT A AV NL + P L+DG +D Sbjct: 63 YEQITSNYVWATAIISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE-- 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++I GD++SLSIAAASI+AKVTRDRLM ++P Y + + GY T +H + I Sbjct: 121 RFVSIINGDNLSLSIAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIH 180 Query: 192 GPSCIHRLTFR 202 G S HR +FR Sbjct: 181 GLSPYHRRSFR 191 >gi|148259652|ref|YP_001233779.1| ribonuclease H [Acidiphilium cryptum JF-5] gi|166225163|sp|A5FW78|RNH2_ACICJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|146401333|gb|ABQ29860.1| RNase HII [Acidiphilium cryptum JF-5] Length = 199 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 112/199 (56%), Gaps = 9/199 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG---INDSKKISHK 66 P F E + VAG+DEVGRG LAGPVV AA IL + P I+DSK++S Sbjct: 2 PDFSRELALG----GVVAGVDEVGRGPLAGPVVAAAAILPADLPPEIAALIDDSKRLSPA 57 Query: 67 KREELYEK-ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +RE I S A IS ++AS I + NI +A+L A+ AV L V P L+DG+ + Sbjct: 58 QREAALAALIESGAAISAAAASVAEIARLNILQASLLAMRRAVARLAVRPDHVLVDGQ-V 116 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 DLP V+ GD +SLSIAAASI AK+ RDR M ++YP YG+ + GY T H+ Sbjct: 117 APDLPMPCTPVVGGDGLSLSIAAASIAAKLVRDRAMSRLDRRYPGYGWARNSGYGTKTHR 176 Query: 186 QVIKEKGPSCIHRLTFRPL 204 I G + HR F PL Sbjct: 177 DAILGLGITPHHRRGFGPL 195 >gi|229824250|ref|ZP_04450319.1| hypothetical protein GCWU000282_01554 [Catonella morbi ATCC 51271] gi|229786604|gb|EEP22718.1| hypothetical protein GCWU000282_01554 [Catonella morbi ATCC 51271] Length = 262 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 81/199 (40%), Positives = 117/199 (58%), Gaps = 5/199 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKRE 69 E E +AG+DEVGRG LAGPVVVAA++L + G+ DSK++SH KR Sbjct: 60 LIHEMAAYEAGYQVIAGLDEVGRGPLAGPVVVAAVVLPRDCQHLLVGVTDSKQLSHAKRL 119 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E +I A + I + ID+ NI++AT + AVE L+V P L+D +I D Sbjct: 120 EFARQIREVALDLKIVAIPPAIIDRENIYQATRQGMKAAVEALRVKPDYLLLDAITIDSD 179 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +++KGD SLSIAAASI+AKV RD LM + YP++GF+ ++GY T +H + Sbjct: 180 --LPQESLVKGDQRSLSIAAASIVAKVYRDELMVQYSQTYPEFGFERNMGYGTKEHLVAL 237 Query: 189 KEKGPSCIHRLTFRPLRNL 207 G + IHR +F P++++ Sbjct: 238 DRVGYTPIHRRSFEPVKSM 256 >gi|237740891|ref|ZP_04571372.1| ribonuclease HII [Fusobacterium sp. 4_1_13] gi|256846832|ref|ZP_05552287.1| ribonuclease HII [Fusobacterium sp. 3_1_36A2] gi|229431188|gb|EEO41400.1| ribonuclease HII [Fusobacterium sp. 4_1_13] gi|256717798|gb|EEU31356.1| ribonuclease HII [Fusobacterium sp. 3_1_36A2] Length = 214 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 84/213 (39%), Positives = 121/213 (56%), Gaps = 14/213 (6%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSK 61 I + P + + + V G+DE GRG LAGPVV AA+IL + INDSK Sbjct: 1 MEEIMDNPLY-----LYDLEYKNVIGVDEAGRGPLAGPVVAAAVILKEYSEELDEINDSK 55 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN-----LQVIPR 116 K++ K RE+LY+ I + +++ ++ + IDK NI A A+ A+++ Sbjct: 56 KLTEKTREKLYDIIMKNFYVAVGVSTVEEIDKLNILNADFLAMRRALKDLENIKKDKKEY 115 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + L+DG ++ + ++KGD+ SLSIAAASIIAKVTRDRLM+ YPDY F+ H Sbjct: 116 TVLVDGNLKIKEYTGKQLPIVKGDAKSLSIAAASIIAKVTRDRLMKDLASVYPDYHFEKH 175 Query: 177 VGYPTAKHQQVIKEKGPSC-IHRLTFRPLRNLS 208 GY T H +VIK+KG +HR F LR ++ Sbjct: 176 KGYGTKVHIEVIKDKGAIEGVHRKVF--LRKIN 206 >gi|126641188|ref|YP_001084172.1| ribonuclease HII [Acinetobacter baumannii ATCC 17978] Length = 174 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 106/169 (62%), Gaps = 1/169 (0%) Query: 39 GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIH 97 G VV AA+ILDPNN G+NDSKK++ KKRE+L+ +I A SI+ A+H ID+ NI Sbjct: 2 GSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIAEATHAEIDELNIL 61 Query: 98 KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157 +AT A+ AVE L+ P+ ++DG IP+ + A++ GD+ I+AASI+AKVTR Sbjct: 62 QATFLAMQRAVEGLKTQPQKVIVDGNQIPKGIIIPCEAIVGGDASHAEISAASILAKVTR 121 Query: 158 DRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 DR M ++YP +GF H GYPT H + I G HR ++ P++ Sbjct: 122 DRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAPVKR 170 >gi|269215611|ref|ZP_06159465.1| ribonuclease HII [Slackia exigua ATCC 700122] gi|269131098|gb|EEZ62173.1| ribonuclease HII [Slackia exigua ATCC 700122] Length = 259 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 67/194 (34%), Positives = 101/194 (52%), Gaps = 8/194 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 ++ + + + G+DEVGRG LAGP+ V A++L GI+DSKK++ REEL Sbjct: 59 YDFQRELAHGGVA--VGLDEVGRGPLAGPLAVGAVVLPDEPRIEGIDDSKKLAPSAREEL 116 Query: 72 YEKITSSAIIS----ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 I ++A+ I + KA A+E V + L+DG + Sbjct: 117 SAVIRATAVAWDVEFIGPHDIDELGISACLKAAFSRAVAAIECAGVRIDAILLDGNPLHI 176 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 D + V+KGD+ +I+ ASIIAKV RD MR YP YGF+ + GY +A+H + Sbjct: 177 DD--REVNVVKGDARCAAISCASIIAKVERDAYMRSQAVAYPAYGFEENKGYGSAQHIEA 234 Query: 188 IKEKGPSCIHRLTF 201 IK+ G + +HR +F Sbjct: 235 IKKHGLTPLHRASF 248 >gi|229586446|ref|YP_002844947.1| ribonuclease HII [Rickettsia africae ESF-5] gi|259494072|sp|C3PMP4|RNH2_RICAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|228021496|gb|ACP53204.1| Ribonuclease HII [Rickettsia africae ESF-5] Length = 193 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 90/191 (47%), Positives = 116/191 (60%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE L Sbjct: 6 LHFEKKYHN---CIVAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + + + SH ID NI +AT A AV NL + P L+DG +D Sbjct: 63 YEQITSNYVWATAIISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE-- 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++I GD++SLSIAAASI+AKVTRDRLM ++P Y + + GY T +H + I Sbjct: 121 RFVSIINGDNLSLSIAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIY 180 Query: 192 GPSCIHRLTFR 202 G S HR +FR Sbjct: 181 GLSPYHRRSFR 191 >gi|311898762|dbj|BAJ31170.1| putative ribonuclease HII [Kitasatospora setae KM-6054] Length = 227 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 69/201 (34%), Positives = 108/201 (53%), Gaps = 1/201 (0%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 + P +E + + VAG+DEVGRGA AGPV+V A + P G+ DSK ++ ++ Sbjct: 4 DPPTHAVERSLHQAGARVVAGLDEVGRGAWAGPVMVGAAVTGLRRPPEGLTDSKLLTERR 63 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L + +I SAS D+ + A A A+E L V P + ++DG+ Sbjct: 64 RAALAPVLEEWVTAYAIGSASALECDELGMTAALRLAAVRALEELPVRPDAVILDGKHDY 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 P + VIKGD + ++AAS++AKV RD LM +P++ F + GYP+ H+ Sbjct: 124 LGGPWRVRTVIKGDQSCVCVSAASVLAKVRRDALMAELGSGHPEFAFAENAGYPSPTHRA 183 Query: 187 VIKEKGPSCIHRLTFRPLRNL 207 ++E GP+ HRL++ L +L Sbjct: 184 ALEEHGPTEHHRLSWAYLDDL 204 >gi|62289376|ref|YP_221169.1| ribonuclease HII [Brucella abortus bv. 1 str. 9-941] gi|82699301|ref|YP_413875.1| ribonuclease HII [Brucella melitensis biovar Abortus 2308] gi|237814863|ref|ZP_04593861.1| Ribonuclease HII [Brucella abortus str. 2308 A] gi|254688691|ref|ZP_05151945.1| ribonuclease HII [Brucella abortus bv. 6 str. 870] gi|254696818|ref|ZP_05158646.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59] gi|254729725|ref|ZP_05188303.1| ribonuclease HII [Brucella abortus bv. 4 str. 292] gi|256256938|ref|ZP_05462474.1| ribonuclease HII [Brucella abortus bv. 9 str. C68] gi|260545871|ref|ZP_05821612.1| ribonuclease HII [Brucella abortus NCTC 8038] gi|260754167|ref|ZP_05866515.1| ribonuclease HII [Brucella abortus bv. 6 str. 870] gi|260757387|ref|ZP_05869735.1| ribonuclease HII [Brucella abortus bv. 4 str. 292] gi|260761211|ref|ZP_05873554.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59] gi|260883192|ref|ZP_05894806.1| ribonuclease HII [Brucella abortus bv. 9 str. C68] gi|297247789|ref|ZP_06931507.1| ribonuclease HII [Brucella abortus bv. 5 str. B3196] gi|73917601|sp|Q57EX6|RNH2_BRUAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|97182300|sp|Q2YMC3|RNH2_BRUA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|62195508|gb|AAX73808.1| RnhB, ribonuclease HII [Brucella abortus bv. 1 str. 9-941] gi|82615402|emb|CAJ10371.1| Ribonuclease HII/HIII [Brucella melitensis biovar Abortus 2308] gi|237789700|gb|EEP63910.1| Ribonuclease HII [Brucella abortus str. 2308 A] gi|260097278|gb|EEW81153.1| ribonuclease HII [Brucella abortus NCTC 8038] gi|260667705|gb|EEX54645.1| ribonuclease HII [Brucella abortus bv. 4 str. 292] gi|260671643|gb|EEX58464.1| ribonuclease HII [Brucella abortus bv. 2 str. 86/8/59] gi|260674275|gb|EEX61096.1| ribonuclease HII [Brucella abortus bv. 6 str. 870] gi|260872720|gb|EEX79789.1| ribonuclease HII [Brucella abortus bv. 9 str. C68] gi|297174958|gb|EFH34305.1| ribonuclease HII [Brucella abortus bv. 5 str. B3196] Length = 220 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|328948714|ref|YP_004366051.1| ribonuclease H [Treponema succinifaciens DSM 2489] gi|328449038|gb|AEB14754.1| Ribonuclease H [Treponema succinifaciens DSM 2489] Length = 199 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 68/198 (34%), Positives = 95/198 (47%), Gaps = 18/198 (9%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRG LAGPV ++L + +NDSKK+S KKRE + I + Sbjct: 1 MDFLVGIDEAGRGPLAGPVTAGCVLLPIDFPVEILNDSKKLSEKKREAASDVIREKSCWG 60 Query: 83 ISSASHQYIDKHNIHKA------------------TLDAIYHAVENLQVIPRSALIDGRS 124 I S + ID+ NI +A + E + + + Sbjct: 61 IGIVSEKIIDEINILQADFKAMKIAFDMMRMKLPAWCEKNKFNFEQCKNSMQIIVDGNML 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 D AVIK DS + AASI+AKV RD++M K YP+YG+ H GYPT H Sbjct: 121 PFTDKNLDIKAVIKADSKFPCVMAASILAKVQRDKIMIDYDKLYPEYGYAKHKGYPTLAH 180 Query: 185 QQVIKEKGPSCIHRLTFR 202 +++ + GPS I RL+F+ Sbjct: 181 KEICRRLGPSPIQRLSFK 198 >gi|17987825|ref|NP_540459.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M] gi|23501290|ref|NP_697417.1| ribonuclease HII [Brucella suis 1330] gi|161618362|ref|YP_001592249.1| ribonuclease HII [Brucella canis ATCC 23365] gi|225626901|ref|ZP_03784940.1| Ribonuclease HII [Brucella ceti str. Cudo] gi|225851926|ref|YP_002732159.1| ribonuclease HII [Brucella melitensis ATCC 23457] gi|254701198|ref|ZP_05163026.1| ribonuclease HII [Brucella suis bv. 5 str. 513] gi|254703743|ref|ZP_05165571.1| ribonuclease HII [Brucella suis bv. 3 str. 686] gi|254707877|ref|ZP_05169705.1| ribonuclease HII [Brucella pinnipedialis M163/99/10] gi|254709539|ref|ZP_05171350.1| ribonuclease HII [Brucella pinnipedialis B2/94] gi|254713044|ref|ZP_05174855.1| ribonuclease HII [Brucella ceti M644/93/1] gi|254716603|ref|ZP_05178414.1| ribonuclease HII [Brucella ceti M13/05/1] gi|256031033|ref|ZP_05444647.1| ribonuclease HII [Brucella pinnipedialis M292/94/1] gi|256044108|ref|ZP_05447019.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1] gi|256060525|ref|ZP_05450694.1| ribonuclease HII [Brucella neotomae 5K33] gi|256112906|ref|ZP_05453822.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether] gi|256159091|ref|ZP_05456917.1| ribonuclease HII [Brucella ceti M490/95/1] gi|256254436|ref|ZP_05459972.1| ribonuclease HII [Brucella ceti B1/94] gi|256264562|ref|ZP_05467094.1| ribonuclease HII [Brucella melitensis bv. 2 str. 63/9] gi|256368842|ref|YP_003106348.1| ribonuclease HII [Brucella microti CCM 4915] gi|260168165|ref|ZP_05754976.1| ribonuclease HII [Brucella sp. F5/99] gi|260563467|ref|ZP_05833953.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M] gi|260567002|ref|ZP_05837472.1| ribonuclease HII [Brucella suis bv. 4 str. 40] gi|261218402|ref|ZP_05932683.1| ribonuclease HII [Brucella ceti M13/05/1] gi|261221604|ref|ZP_05935885.1| ribonuclease HII [Brucella ceti B1/94] gi|261315368|ref|ZP_05954565.1| ribonuclease HII [Brucella pinnipedialis M163/99/10] gi|261317065|ref|ZP_05956262.1| ribonuclease HII [Brucella pinnipedialis B2/94] gi|261320749|ref|ZP_05959946.1| ribonuclease HII [Brucella ceti M644/93/1] gi|261324519|ref|ZP_05963716.1| ribonuclease HII [Brucella neotomae 5K33] gi|261751735|ref|ZP_05995444.1| ribonuclease HII [Brucella suis bv. 5 str. 513] gi|261754388|ref|ZP_05998097.1| ribonuclease HII [Brucella suis bv. 3 str. 686] gi|261757623|ref|ZP_06001332.1| ribonuclease HII [Brucella sp. F5/99] gi|265988103|ref|ZP_06100660.1| ribonuclease HII [Brucella pinnipedialis M292/94/1] gi|265990520|ref|ZP_06103077.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1] gi|265994348|ref|ZP_06106905.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether] gi|265997568|ref|ZP_06110125.1| ribonuclease HII [Brucella ceti M490/95/1] gi|61234184|sp|P0A4D9|RNH2_BRUME RecName: Full=Ribonuclease HII; Short=RNase HII gi|61234188|sp|P0A4E0|RNH2_BRUSU RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043568|sp|A9M8G2|RNH2_BRUC2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807968|sp|C0RH97|RNH2_BRUMB RecName: Full=Ribonuclease HII; Short=RNase HII gi|2984785|gb|AAC08032.1| ribonuclease HII [Brucella melitensis] gi|17983553|gb|AAL52723.1| ribonuclease hii [Brucella melitensis bv. 1 str. 16M] gi|23347178|gb|AAN29332.1| ribonuclease HII [Brucella suis 1330] gi|161335173|gb|ABX61478.1| Ribonuclease HII [Brucella canis ATCC 23365] gi|225618558|gb|EEH15601.1| Ribonuclease HII [Brucella ceti str. Cudo] gi|225640291|gb|ACO00205.1| Ribonuclease HII [Brucella melitensis ATCC 23457] gi|255999000|gb|ACU47399.1| ribonuclease HII [Brucella microti CCM 4915] gi|260153483|gb|EEW88575.1| ribonuclease HII [Brucella melitensis bv. 1 str. 16M] gi|260156520|gb|EEW91600.1| ribonuclease HII [Brucella suis bv. 4 str. 40] gi|260920188|gb|EEX86841.1| ribonuclease HII [Brucella ceti B1/94] gi|260923491|gb|EEX90059.1| ribonuclease HII [Brucella ceti M13/05/1] gi|261293439|gb|EEX96935.1| ribonuclease HII [Brucella ceti M644/93/1] gi|261296288|gb|EEX99784.1| ribonuclease HII [Brucella pinnipedialis B2/94] gi|261300499|gb|EEY03996.1| ribonuclease HII [Brucella neotomae 5K33] gi|261304394|gb|EEY07891.1| ribonuclease HII [Brucella pinnipedialis M163/99/10] gi|261737607|gb|EEY25603.1| ribonuclease HII [Brucella sp. F5/99] gi|261741488|gb|EEY29414.1| ribonuclease HII [Brucella suis bv. 5 str. 513] gi|261744141|gb|EEY32067.1| ribonuclease HII [Brucella suis bv. 3 str. 686] gi|262552036|gb|EEZ08026.1| ribonuclease HII [Brucella ceti M490/95/1] gi|262765461|gb|EEZ11250.1| ribonuclease HII [Brucella melitensis bv. 3 str. Ether] gi|263001304|gb|EEZ13879.1| ribonuclease HII [Brucella melitensis bv. 1 str. Rev.1] gi|263094927|gb|EEZ18635.1| ribonuclease HII [Brucella melitensis bv. 2 str. 63/9] gi|264660300|gb|EEZ30561.1| ribonuclease HII [Brucella pinnipedialis M292/94/1] gi|326408425|gb|ADZ65490.1| ribonuclease HII [Brucella melitensis M28] gi|326538139|gb|ADZ86354.1| ribonuclease HII [Brucella melitensis M5-90] Length = 220 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 97/203 (47%), Positives = 137/203 (67%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|323702665|ref|ZP_08114326.1| Ribonuclease H [Desulfotomaculum nigrificans DSM 574] gi|323532328|gb|EGB22206.1| Ribonuclease H [Desulfotomaculum nigrificans DSM 574] Length = 214 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 76/202 (37%), Positives = 109/202 (53%), Gaps = 7/202 (3%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 ELE + ++ + VA DEVGRG L G VV AA++L + G++DSKK++ KKRE Sbjct: 3 SLELEQKLWQQGIKLVAFCDEVGRGPLLGSVVAAAVVLPVGLLIEGVDDSKKLTPKKRET 62 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----SI 125 L I A + I + ID+ NI +A+ A+ AV NL+ + + Sbjct: 63 LCRYIYDQALAVGIGEVDNNLIDQINIRQASRLAMKQAVMNLRSKEGHKVTPDYLLIDAE 122 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 DL ++I GD++S IAAASI+AKV RD + + YPDYG SH GY T H Sbjct: 123 SIDLDIPQQSIIHGDAVSHGIAAASIVAKVFRDSMCMEWDQMYPDYGIASHKGYATKAHI 182 Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207 + + + G + +HR TF LR + Sbjct: 183 EALLKLGATPLHRRTF--LRKI 202 >gi|219854648|ref|YP_002471770.1| hypothetical protein CKR_1305 [Clostridium kluyveri NBRC 12016] gi|219568372|dbj|BAH06356.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 290 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 87/192 (45%), Positives = 115/192 (59%), Gaps = 9/192 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKREELYEKIT 76 N VAG DEVGRG LAGP+V AA+IL+ N + G+ DSKK++ K R EL + I Sbjct: 101 NYIYVAGTDEVGRGPLAGPIVAAAVILNLNYVEDKKLILGVKDSKKLTQKARYELSQTIK 160 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A SI+ +++ IDK I + + AV L++ L DG ++ +LP + Sbjct: 161 EKALSYSIAVINNKEIDKRGISWCNNEVLRKAVLGLKLPVELVLSDGYAVK-NLPVRNEF 219 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGDS S+SIA+ASIIAKV RD LMR K Y +Y F S+ GY T +H IK+ G Sbjct: 220 VIKGDSKSVSIASASIIAKVYRDELMREYSKVYTEYNFQSNSGYGTKEHIGAIKKYGTCK 279 Query: 196 IHRLTFRPLRNL 207 IHRL+F LRN+ Sbjct: 280 IHRLSF--LRNI 289 >gi|153954034|ref|YP_001394799.1| ribonuclease HII [Clostridium kluyveri DSM 555] gi|189043584|sp|A5N820|RNH2_CLOK5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|146346915|gb|EDK33451.1| Hypothetical protein CKL_1409 [Clostridium kluyveri DSM 555] Length = 288 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 87/192 (45%), Positives = 115/192 (59%), Gaps = 9/192 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKREELYEKIT 76 N VAG DEVGRG LAGP+V AA+IL+ N + G+ DSKK++ K R EL + I Sbjct: 99 NYIYVAGTDEVGRGPLAGPIVAAAVILNLNYVEDKKLILGVKDSKKLTQKARYELSQTIK 158 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 A SI+ +++ IDK I + + AV L++ L DG ++ +LP + Sbjct: 159 EKALSYSIAVINNKEIDKRGISWCNNEVLRKAVLGLKLPVELVLSDGYAVK-NLPVRNEF 217 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 VIKGDS S+SIA+ASIIAKV RD LMR K Y +Y F S+ GY T +H IK+ G Sbjct: 218 VIKGDSKSVSIASASIIAKVYRDELMREYSKVYTEYNFQSNSGYGTKEHIGAIKKYGTCK 277 Query: 196 IHRLTFRPLRNL 207 IHRL+F LRN+ Sbjct: 278 IHRLSF--LRNI 287 >gi|224532055|ref|ZP_03672687.1| ribonuclease HII [Borrelia valaisiana VS116] gi|224511520|gb|EEF81926.1| ribonuclease HII [Borrelia valaisiana VS116] Length = 181 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 1/181 (0%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDEVGRG + GP++ AA++ + ++DSKK+ +KRE LY I ++ + Sbjct: 1 MICGIDEVGRGCIFGPILSAAVVFKKKPSFVKELDDSKKLKKEKREYLYSLILENSYYAF 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + S+ I+K NIH A+L A+ A ENL++ +DG+ +P+ A+IKGDSI Sbjct: 61 AEISNITIEKINIHNASLLAMQTAYENLKLNCSLVFVDGKFVPKITAKTVKAIIKGDSII 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I AASIIAKV RD+LM K YP Y + GYPT +H+ IK+ G +HR F+ Sbjct: 121 DEIKAASIIAKVKRDKLMDEYDKIYPLYLLKKNKGYPTKEHKNAIKKYGVLSLHRKNFKL 180 Query: 204 L 204 + Sbjct: 181 I 181 >gi|157828142|ref|YP_001494384.1| ribonuclease HII [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932842|ref|YP_001649631.1| ribonuclease HII [Rickettsia rickettsii str. Iowa] gi|166226649|sp|A8GR51|RNH2_RICRS RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043649|sp|B0BWJ9|RNH2_RICRO RecName: Full=Ribonuclease HII; Short=RNase HII gi|157800623|gb|ABV75876.1| ribonuclease HII [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907929|gb|ABY72225.1| ribonuclease HII [Rickettsia rickettsii str. Iowa] Length = 193 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 91/191 (47%), Positives = 115/191 (60%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE L Sbjct: 6 LHFEKKYHN---CIVAGIDEAGRGPLAGPVVASAVIVDNANIITGIKDSKKLSKKKRELL 62 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 YE+ITS+ + + SH ID NI +AT A AV NL + P L+DG +D Sbjct: 63 YEQITSNYAWATAIISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE-- 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++I GD++SLSIAAASIIAKVTRDRLM ++P Y + + GY T +H + I Sbjct: 121 RFVSIINGDNLSLSIAAASIIAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINIH 180 Query: 192 GPSCIHRLTFR 202 G S HR +FR Sbjct: 181 GLSPYHRRSFR 191 >gi|188586001|ref|YP_001917546.1| RNase HII [Natranaerobius thermophilus JW/NM-WN-LF] gi|229470478|sp|B2A2P0|RNH2_NATTJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|179350688|gb|ACB84958.1| RNase HII [Natranaerobius thermophilus JW/NM-WN-LF] Length = 198 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 79/183 (43%), Positives = 111/183 (60%), Gaps = 3/183 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREELYEKITSSA-IISIS 84 GIDE G GA A V V+A +LDP + DSK+++ KKRE L E+I A I+ Sbjct: 5 CGIDEAGFGAGAAQVYVSACVLDPQKPINESLTDSKQLTPKKRELLAEEIKQDALTWCIA 64 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +AS + I+K NI KAT+ A+ ++E L V P IDG ++P V+KGDS Sbjct: 65 TASVEEIEKLNIRKATILAMKRSLEGLTVKPDMVYIDGI-NSPEVPFPVETVVKGDSKIP 123 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +I+AASI+AKV RD M ++YP+YGF H GY T H + I++ GPS IHR T++P+ Sbjct: 124 AISAASILAKVARDNRMLEYDEQYPEYGFKDHKGYLTKNHIKAIQKYGPSPIHRKTYKPI 183 Query: 205 RNL 207 + + Sbjct: 184 KKI 186 >gi|239948099|ref|ZP_04699852.1| ribonuclease HII [Rickettsia endosymbiont of Ixodes scapularis] gi|239922375|gb|EER22399.1| ribonuclease HII [Rickettsia endosymbiont of Ixodes scapularis] Length = 193 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 89/178 (50%), Positives = 113/178 (63%), Gaps = 2/178 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 VAGIDE GRG LAGPVV +A+I+D NI GI DSKK+S KKRE LYE+ITS+ + S + Sbjct: 16 IVAGIDEAGRGPLAGPVVASAVIIDNANIITGIKDSKKLSKKKRELLYEQITSNYVWSAA 75 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SH ID+ NI +AT A A NL P L+DG D + +++ GD++SL Sbjct: 76 IISHTEIDEINILEATKKACSIAAANLTTKPEIVLVDGNMQFNDE--RFVSIVNGDNLSL 133 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAASIIAKVTRDRLM ++P Y + + GY T +H + I G S HR +FR Sbjct: 134 SIAAASIIAKVTRDRLMLDLSAEFPQYLWHKNSGYGTKEHIEAINTHGLSPYHRRSFR 191 >gi|187933770|ref|YP_001885450.1| ribonuclease HII [Clostridium botulinum B str. Eklund 17B] gi|187721923|gb|ACD23144.1| ribonuclease HII [Clostridium botulinum B str. Eklund 17B] Length = 271 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 111/195 (56%), Gaps = 8/195 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 +E + E +AG+DEVGRG LAGP+V A+ILD + +NDSKK++H K Sbjct: 75 YEFDKSFGE--FKYIAGVDEVGRGPLAGPIVACAVILDLNVIDEELILYLNDSKKLNHTK 132 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL I A IS +S++ ID+ I + + + NL V P L DG + Sbjct: 133 REELSAIIKEKALAYYISLSSNKEIDERGIAFSNNNVFLDSCNNLSVRPDLVLSDGYLVK 192 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 ++ +IKGD+ S SIAAASI+AKV RD LM+ KYP Y F++++GY T KH Sbjct: 193 -NIEITNKFIIKGDTKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTPKHID 251 Query: 187 VIKEKGPSCIHRLTF 201 +K+ G IHR +F Sbjct: 252 GLKKYGKCEIHRNSF 266 >gi|150016066|ref|YP_001308320.1| ribonuclease HII [Clostridium beijerinckii NCIMB 8052] gi|189043579|sp|A6LSN4|RNH2_CLOB8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|149902531|gb|ABR33364.1| Ribonuclease H [Clostridium beijerinckii NCIMB 8052] Length = 270 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 83/195 (42%), Positives = 116/195 (59%), Gaps = 8/195 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 +E + +AG+DEVGRG LAGP+V ++ILD ++ INDSKK+ K Sbjct: 74 YEFDKSFGS--YRYIAGVDEVGRGPLAGPIVACSVILDLNVLEKDLILYINDSKKVKEHK 131 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL E I A I+ +S++ ID+ I A + +L + P L DG I Sbjct: 132 REELSEIIKEKALSYQIAVSSNKEIDEKGIAFANNKVFLESCNSLSIKPDLVLSDGYLIK 191 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 ++ + +VIKGD+ S SIAAASI+AKV RDRLM+ KKYP Y F+++VGY T+KH + Sbjct: 192 -NIGIENKSVIKGDTKSASIAAASIVAKVYRDRLMKEYAKKYPHYDFENNVGYGTSKHIE 250 Query: 187 VIKEKGPSCIHRLTF 201 +K+ G S IHR +F Sbjct: 251 GLKKYGKSDIHRNSF 265 >gi|148560173|ref|YP_001258413.1| ribonuclease HII [Brucella ovis ATCC 25840] gi|294851769|ref|ZP_06792442.1| ribonuclease HII [Brucella sp. NVSL 07-0026] gi|166225171|sp|A5VNW6|RNH2_BRUO2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|148371430|gb|ABQ61409.1| ribonuclease HII [Brucella ovis ATCC 25840] gi|294820358|gb|EFG37357.1| ribonuclease HII [Brucella sp. NVSL 07-0026] Length = 220 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 96/203 (47%), Positives = 136/203 (66%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +P P F E + ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ Sbjct: 13 DLPLAPDFSQEQQLMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ AV L + P AL+DGR Sbjct: 73 AARREALYEIILTKAITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P L C A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLSCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ +GP +HR TF P++ Sbjct: 193 HRAAIESEGPVPGLHRYTFAPIK 215 >gi|78356141|ref|YP_387590.1| ribonuclease HII [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|97182419|sp|Q313K1|RNH2_DESDG RecName: Full=Ribonuclease HII; Short=RNase HII gi|78218546|gb|ABB37895.1| RNase HII [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 263 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 101/207 (48%), Gaps = 29/207 (14%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF---------GINDSKKISHKKREELYEKITSS 78 GIDE GRG LAGPVV AA+IL P P G+ DSKK+S K+R L I S Sbjct: 43 GIDEAGRGCLAGPVVAAAVILPPAGAPAAPHIAAALSGLTDSKKLSEKRRLTLEPAIKSC 102 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAV-----------ENLQVIPRSALIDGRSIP 126 A + Q ID+ NI +AT A+ AV + P +DG Sbjct: 103 AVRWGVGVVWPQVIDRINILQATYRAMSLAVRHLRGGGAAASMPAGLPPVFLAVDGDKTI 162 Query: 127 EDLP--------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 A++ GD ++I+AAS++AK RDRLM K+Y YGF +H G Sbjct: 163 PGQVLQAVTGLSVPQEAIVGGDGCVMAISAASVLAKTFRDRLMTALDKRYSGYGFATHKG 222 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLR 205 Y TA H + I+ GP +HRL+F ++ Sbjct: 223 YGTAAHIEAIRRLGPCRMHRLSFAKVK 249 >gi|254448807|ref|ZP_05062264.1| ribonuclease HII [gamma proteobacterium HTCC5015] gi|198261648|gb|EDY85936.1| ribonuclease HII [gamma proteobacterium HTCC5015] Length = 202 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 93/182 (51%), Positives = 119/182 (65%), Gaps = 2/182 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG DE GRG LAG VV AA++LDP G+NDSKK+S K+RE LYE+I + A I+ Sbjct: 17 IAGADEAGRGPLAGSVVAAAVVLDPKRPIPGLNDSKKLSEKRREALYEEICAEASDWCIA 76 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS + ID NI A++ A+ A+E LQ P ALIDG P D+ A A++KGD Sbjct: 77 RASVEEIDDLNILHASMLAMKRAIEGLQHPPEQALIDGNRCP-DVSMPAQAIVKGDGRVA 135 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I AASI+AKV RDR M + H+ YPDYGFD H GYPTA HQ+ +K GP+ HR +F P+ Sbjct: 136 CIGAASILAKVARDRDMLLLHEAYPDYGFDRHKGYPTALHQERLKALGPTEHHRRSFGPV 195 Query: 205 RN 206 + Sbjct: 196 KK 197 >gi|327404332|ref|YP_004345170.1| RNase HII [Fluviicola taffensis DSM 16823] gi|327319840|gb|AEA44332.1| RNase HII [Fluviicola taffensis DSM 16823] Length = 202 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 89/176 (50%), Gaps = 1/176 (0%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG DE GRG LAGPVV A++IL +NDSK++S K R L I A S+ Sbjct: 14 AGCDEAGRGCLAGPVVCASVILPKGFSHPLLNDSKQLSEKSRNLLRPIIEQEALAFSVQF 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 I NI KA+L ++ A L++ P LIDG + A IKGD S Sbjct: 74 LQPDEIVVLNILKASLTGMHRAAMALKIRPELLLIDGNKTLLSNEIPSIAFIKGDGKYKS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AK RD M H+ + Y + + GYPT H++ I+ G HR F Sbjct: 134 IAAASILAKTYRDEYMEKLHEDFTHYDWKINKGYPTKAHRKAIEIHGACIHHRPGF 189 >gi|255326009|ref|ZP_05367097.1| ribonuclease HII [Rothia mucilaginosa ATCC 25296] gi|255296900|gb|EET76229.1| ribonuclease HII [Rothia mucilaginosa ATCC 25296] Length = 276 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 97/240 (40%), Gaps = 41/240 (17%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSK 61 + P E E + VAGIDEVGRG++AGPV V IL P+ G+ DSK Sbjct: 21 KATPPAADLEYEQQLFASGARTVAGIDEVGRGSMAGPVTVGVAILTPDATLEVGGLIDSK 80 Query: 62 KISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S +RE + +I +++ ID+ + + A A+ L A Sbjct: 81 ALSPARRESMVPEIRQWCAVAVGHVEPADIDRLGMTLSLRLAAQRALAELARRGYRADAA 140 Query: 122 GRSIPEDLP---------------------------------------CQAFAVIKGDSI 142 D VIKGD Sbjct: 141 LLDGKHDWFTPPQEDLFSALAPDPAQAHYNALLAQAWEGAGGAGEPAQMPVTMVIKGDYK 200 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 SIAAAS++AKV RD LM +YP YG+ + GY +A H++ I +GPS HRL++ Sbjct: 201 CASIAAASVVAKVERDELMVQLDIRYPGYGWAKNKGYGSAAHREAISVQGPSPQHRLSWS 260 >gi|328752252|gb|EGF65868.1| ribonuclease HII [Propionibacterium acnes HL020PA1] Length = 204 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 76/196 (38%), Positives = 102/196 (52%), Gaps = 4/196 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 3 HERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREAL 62 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S D+ + +A + + AV L V P L DG + L Sbjct: 63 FNVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGF-PVDGLT 121 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA Q+ +KE Sbjct: 122 VPDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALQQRRLKE 181 Query: 191 KGPSCIHRLTFRPLRN 206 GPS HR+++ +R Sbjct: 182 LGPSRQHRMSYANVRR 197 >gi|283458215|ref|YP_003362833.1| ribonuclease HII [Rothia mucilaginosa DY-18] gi|283134248|dbj|BAI65013.1| ribonuclease HII [Rothia mucilaginosa DY-18] Length = 278 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 97/243 (39%), Gaps = 43/243 (17%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDS 60 + P E E + VAGIDEVGRG++AGPV V IL P+ G+ DS Sbjct: 20 VKATPPAADLEYEQQLFASGARTVAGIDEVGRGSMAGPVTVGVAILTPDATLEVGGLIDS 79 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K +S +RE + +I +++ ID+ + + A A+ L A Sbjct: 80 KALSPARRESMVPEIRQWCAVAVGHVEPADIDRLGMTLSLRLAAQRALAELARRGYRADA 139 Query: 121 DGRSIPEDLP-----------------------------------------CQAFAVIKG 139 D VIKG Sbjct: 140 ALLDGKHDWFTPPQEDLFSALAPDPAQAHYNALLAQAWEGAGEGGAGEPAQMPVTMVIKG 199 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D SIAAAS++AKV RD LM +YP YG+ + GY +A H++ I +GPS HRL Sbjct: 200 DYKCASIAAASVVAKVERDELMVQLDTRYPGYGWAKNKGYGSAAHREAISVQGPSPQHRL 259 Query: 200 TFR 202 ++ Sbjct: 260 SWS 262 >gi|227504791|ref|ZP_03934840.1| ribonuclease HII [Corynebacterium striatum ATCC 6940] gi|227198641|gb|EEI78689.1| ribonuclease HII [Corynebacterium striatum ATCC 6940] Length = 213 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 74/197 (37%), Positives = 102/197 (51%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREE 70 E + + + PVAG+DE GRGA GP+ +AA IL IP + DSKK+S RE Sbjct: 9 TYEVALSKAGLGPVAGVDEAGRGACCGPITIAACILPDKIIPELDKLTDSKKLSPATRER 68 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A+ S+ + IDK I A + + AV L V P L D +P + Sbjct: 69 LFPIIKDKAVAWSVVHIDARDIDKRGIQHANVSGMRRAVARLDVRPHYVLSDALKVP-GM 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P +I GD+ + IAAAS++AKV+RD +M YP YG H GY TA HQ I Sbjct: 128 PAPQLPIIGGDAAARCIAAASVLAKVSRDHIMDELDVAYPGYGLAGHKGYGTAAHQAAIV 187 Query: 190 EKGPSCIHRLTFRPLRN 206 + G + HR+ + + N Sbjct: 188 KLGATPEHRMGYANVAN 204 >gi|118471655|ref|YP_886782.1| ribonuclease HII [Mycobacterium smegmatis str. MC2 155] gi|166226626|sp|A0QV44|RNH2_MYCS2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|118172942|gb|ABK73838.1| ribonuclease HII [Mycobacterium smegmatis str. MC2 155] Length = 272 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 110/197 (55%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE+ + + PVAG+DEVGRGA AGP+VVAA +L PN + ++DSKK+ K+RE Sbjct: 19 TLESALYRNGLGPVAGVDEVGRGACAGPLVVAACVLGPNRLESLAALDDSKKLGEKERER 78 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A + +D+ +H A ++ + AV L V P L DG +P L Sbjct: 79 LFPLIRRYALAYHVVFIPSHEVDRRGVHVANIEGMRRAVAGLSVRPGYVLSDGFRVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD+ + IAAAS++AKV+RDRLM +++P YGF H GY T H + Sbjct: 138 SVPSLPVIGGDAAAACIAAASVLAKVSRDRLMVEMEEQHPGYGFAEHKGYITPAHTAALT 197 Query: 190 EKGPSCIHRLTFRPLRN 206 GP HR ++ +R Sbjct: 198 RHGPCVEHRYSYVNVRR 214 >gi|190573489|ref|YP_001971334.1| putative ribonuclease HII [Stenotrophomonas maltophilia K279a] gi|190011411|emb|CAQ45029.1| putative ribonuclease HII [Stenotrophomonas maltophilia K279a] Length = 223 Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 76/184 (41%), Positives = 111/184 (60%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSA-II 81 VAG+DE GRG LAGPV VAA++ DP G++DSK+++ +RE+L+++I A Sbjct: 24 RLVAGVDEAGRGPLAGPVAVAAVVFDPARPRINGLDDSKQLTAARREQLHDRIIERALAW 83 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + ID+ NI++ATL + V + + A IDG +P+ L A A++ GD Sbjct: 84 HVVLVDVDTIDRLNIYQATLQGMRDVVAAVAHVAGFARIDGNVVPKGLVLPAQALVGGDG 143 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I +I AASI+AKV+RDR M+ H ++P YGF+ H GY T H ++E GP HR +F Sbjct: 144 IDRAIMAASILAKVSRDRYMQDVHARHPQYGFEHHKGYGTPAHLAALREHGPCMEHRRSF 203 Query: 202 RPLR 205 P+R Sbjct: 204 APVR 207 >gi|55980167|ref|YP_143464.1| ribonuclease HII [Thermus thermophilus HB8] gi|73917835|sp|Q5SLU5|RNH2_THET8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|55771580|dbj|BAD70021.1| ribonuclease HII [Thermus thermophilus HB8] Length = 203 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 80/192 (41%), Positives = 109/192 (56%), Gaps = 6/192 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LEA K + VAG+DE GRGA AGP+VV A++L P PF DSK +S K RE L E Sbjct: 6 LEAPFWRKGL-LVAGLDEAGRGAWAGPIVVGAVVLPPGEYPF--RDSKLLSPKARERLAE 62 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 K+ A ++ A +D+ + KATL A A+ +L + P + + D +P P Sbjct: 63 KVKEVALAFALGVAEAAEVDRLGVLKATLLAAERALLSLPLAPEALVTD--YLPLPTPLP 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 + K D S ++AAASI+AKV RDR+M + YP YGF H GY T +HQ+ + G Sbjct: 121 LLSPPKADEKSPTVAAASILAKVHRDRIMDELDRLYPGYGFARHKGYGTQEHQEALLALG 180 Query: 193 PSCIHRLTFRPL 204 PS +HR F P+ Sbjct: 181 PSPVHRKRFAPV 192 >gi|315917438|ref|ZP_07913678.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563] gi|313691313|gb|EFS28148.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563] Length = 211 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 79/203 (38%), Positives = 115/203 (56%), Gaps = 13/203 (6%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKRE 69 F++E + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE Sbjct: 12 DFDVEK------GEKIVGVDEAGRGPLAGPVVAAAALLKQYDRSLEPIQDSKKLTEKKRE 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSI 125 L+ I + I AS + I+K+NI AT A+ A+ E +++ + L+DG Sbjct: 66 ALFSVIPQFFYVGIGQASVEEIEKYNILNATFLAMRRALGNLEEQVEIQDATILVDGNFT 125 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + + A++KGD+ SLSIAAASI+AKVTRD + ++YPDY F+ H GY T H+ Sbjct: 126 IRECERKQEAIVKGDAKSLSIAAASIMAKVTRDHELVELAEQYPDYFFEKHKGYGTKVHR 185 Query: 186 QVIKEKGPSC-IHRLTFRPLRNL 207 + I GP +HR +F ++ L Sbjct: 186 EKILSLGPIPGVHRDSF-LVKIL 207 >gi|257466281|ref|ZP_05630592.1| ribonuclease HII [Fusobacterium gonidiaformans ATCC 25563] Length = 210 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 79/203 (38%), Positives = 115/203 (56%), Gaps = 13/203 (6%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKRE 69 F++E + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE Sbjct: 11 DFDVEK------GEKIVGVDEAGRGPLAGPVVAAAALLKQYDRSLEPIQDSKKLTEKKRE 64 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSI 125 L+ I + I AS + I+K+NI AT A+ A+ E +++ + L+DG Sbjct: 65 ALFSVIPQFFYVGIGQASVEEIEKYNILNATFLAMRRALGNLEEQVEIQDATILVDGNFT 124 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + + A++KGD+ SLSIAAASI+AKVTRD + ++YPDY F+ H GY T H+ Sbjct: 125 IRECERKQEAIVKGDAKSLSIAAASIMAKVTRDHELVELAEQYPDYFFEKHKGYGTKVHR 184 Query: 186 QVIKEKGPSC-IHRLTFRPLRNL 207 + I GP +HR +F ++ L Sbjct: 185 EKILSLGPIPGVHRDSF-LVKIL 206 >gi|238063313|ref|ZP_04608022.1| ribonuclease HII [Micromonospora sp. ATCC 39149] gi|237885124|gb|EEP73952.1| ribonuclease HII [Micromonospora sp. ATCC 39149] Length = 270 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA +L G+ DSK ++ RE Sbjct: 16 YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +Y+++ +SA+ A ++ + L Sbjct: 76 RVYDQVVASALAYAVVVIPADEVDARGLHVCNLAAMRRALASLTTRPDYVLTDGFGVDGL 135 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AV KGD ++ +AAAS++AKVTRDR+M +P YGF H GY TA+H ++ Sbjct: 136 DVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDASFPGYGFAEHKGYITAEHTAALR 195 Query: 190 EKGPSCIHRLTFRPL 204 E GP HR ++ + Sbjct: 196 EHGPCLEHRFSYVNV 210 >gi|269123118|ref|YP_003305695.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112] gi|268314444|gb|ACZ00818.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112] Length = 199 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 113/195 (57%), Gaps = 6/195 (3%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-INDSKKISHKKREELYEKI 75 + + G+DE GRG LAGPVV A + ++ + +NDSKK++ KKR EL+ + Sbjct: 4 KFDKSFKRRIIGVDEAGRGPLAGPVVAACVCINKYSKKLEELNDSKKLTDKKRRELFNYL 63 Query: 76 TSSAIISISSASH--QYIDKHNIHKATLDAIYHAVENLQVIPRSAL-IDGRSIPEDLPCQ 132 T++ I I + ID+ NI AT A+ +A++N++ + + +DG + + Sbjct: 64 TTNDDIKIGVGIVDEKVIDEINILNATFLAMNNALDNMEKDEKDLVLVDGNKEIKGYLGK 123 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A++KGD SLSIAAASIIAKVTRD +M YP Y F H GY T H + IKEKG Sbjct: 124 QEAIVKGDGKSLSIAAASIIAKVTRDNIMEEYDLIYPGYEFAKHKGYGTKMHYECIKEKG 183 Query: 193 PSCIHRLTFRPLRNL 207 IHRL+F L+NL Sbjct: 184 RCYIHRLSF--LKNL 196 >gi|291299696|ref|YP_003510974.1| ribonuclease H [Stackebrandtia nassauensis DSM 44728] gi|290568916|gb|ADD41881.1| Ribonuclease H [Stackebrandtia nassauensis DSM 44728] Length = 211 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + LE +R + VAG DE GRGA AGP+VVAA IL G+ DSK ++ + RE Sbjct: 2 YVLENALRRRGFTLVAGADEAGRGACAGPLVVAAAILPDGARGQIAGLTDSKLLTERARE 61 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 ++Y ++ A+ A+ + + + L Sbjct: 62 DIYAQVVDRAVAHAIVVISPAEVDRLGVGASNLSGMRRALARLDPMPAYALTDGFPVPGL 121 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P V KGD ++ +AAAS++AKVTRDR+M + +P YGF H GY TA H ++ Sbjct: 122 PVPGLGVWKGDRVAACVAAASVLAKVTRDRIMTELEQNHPGYGFAEHKGYGTAAHTHALR 181 Query: 190 EKGPSCIHRLTFRPL 204 GP HRL++ + Sbjct: 182 TLGPCPQHRLSYANV 196 >gi|71892067|ref|YP_277797.1| ribonuclease HII [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|97182291|sp|Q493B8|RNH2_BLOPB RecName: Full=Ribonuclease HII; Short=RNase HII gi|71796173|gb|AAZ40924.1| ribonuclease HII [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 217 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 80/194 (41%), Positives = 105/194 (54%), Gaps = 1/194 (0%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E+ + K +AG+DE G G+L G V+ AA+IL G+ DSK ++ KR LY Sbjct: 14 EIPKTLSIKKFKLIAGVDESGCGSLVGSVIAAAVILHSIQPISGLADSKTLNKNKRLNLY 73 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I +A SI A ID+ NI +A L A+ AV NL V P LIDG P Sbjct: 74 KNIIKNALAWSIGYADVTEIDRSNILEARLLAMKRAVHNLSVKPDLILIDGNRSPGFTEI 133 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 KGD+ I+AASIIAKVTRD+ M I K+YP YGF + GYPT H + + Sbjct: 134 PYQCFNKGDARIAIISAASIIAKVTRDQDMIILDKQYPKYGFAQNKGYPTFFHLKQLALY 193 Query: 192 GPSCIHRLTFRPLR 205 GP HR +F P++ Sbjct: 194 GPISQHRKSFAPVK 207 >gi|218288272|ref|ZP_03492571.1| Ribonuclease H [Alicyclobacillus acidocaldarius LAA1] gi|218241631|gb|EED08804.1| Ribonuclease H [Alicyclobacillus acidocaldarius LAA1] Length = 207 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 75/196 (38%), Positives = 107/196 (54%), Gaps = 6/196 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKR 68 + AG+DEVGRG +AGPVV A+++L + DSK++ R Sbjct: 7 RYRLDLALSGGCRTAGVDEVGRGCIAGPVVAASVVLPLELETYEELKDVMDSKQLKSDVR 66 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L ++I + A + I AS + ID+ NI +AT A+ +++ L + AL+DG Sbjct: 67 ERLADRIRAKALAVGIGMASPEEIDRLNILQATQLAMKRSLDALDIPVDLALVDGNRAFR 126 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 V+ GD+ SL IAAAS+IAKV RDRLM + +P YGF HVGY T H + Sbjct: 127 -HRVPVLPVVDGDARSLPIAAASVIAKVFRDRLMAKLDEGFPGYGFSEHVGYGTRAHLEA 185 Query: 188 IKEKGPSCIHRLTFRP 203 ++ GPS +HRL+F P Sbjct: 186 LRRLGPSVVHRLSFAP 201 >gi|119717477|ref|YP_924442.1| ribonuclease HII [Nocardioides sp. JS614] gi|189043632|sp|A1SLS0|RNH2_NOCSJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|119538138|gb|ABL82755.1| Ribonuclease H [Nocardioides sp. JS614] Length = 240 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 107/198 (54%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + E +R + P+AG+DE GRGA AGP+V A IL P I G+ DSK ++ + RE Sbjct: 17 YGYERALRRHGIEPIAGVDEAGRGACAGPLVAGAAILPPGKAGIVPGLADSKLLTERARE 76 Query: 70 ELYEKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 YE+I A+ H+ D+ +H A ++A+ AV L + P L DG + Sbjct: 77 RCYEQIVRRAVSWSVVVVSHEECDRLGMHVANVEALRRAVALLDLPPAYVLTDGF-PVDG 135 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV KGD ++ I+AAS++AKVTRDR+M +P Y F +H GY T H + Sbjct: 136 LGVPGLAVWKGDRVAACISAASVLAKVTRDRIMTELDASWPAYDFKTHKGYITEVHSAAL 195 Query: 189 KEKGPSCIHRLTFRPLRN 206 GPS IHR+ F +R Sbjct: 196 TAHGPSPIHRMRFVNVRR 213 >gi|158313006|ref|YP_001505514.1| ribonuclease HII [Frankia sp. EAN1pec] gi|238686844|sp|A8L6C6|RNH2_FRASN RecName: Full=Ribonuclease HII; Short=RNase HII gi|158108411|gb|ABW10608.1| Ribonuclease H [Frankia sp. EAN1pec] Length = 240 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 81/200 (40%), Positives = 119/200 (59%), Gaps = 4/200 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN--DSKKISHKKRE 69 F E + + + PVAG+DE GRGA AGP+VVAA++LD + DSK ++ + RE Sbjct: 15 FGYERALVRRGLGPVAGVDEAGRGACAGPMVVAAVVLDQRRLGLLRRLADSKLLTERVRE 74 Query: 70 ELY-EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E++ + + ++A +S ID++ +H A + + AV L V PR L DG ++ Sbjct: 75 EVHADVLAAAAAVSTIVIPAAEIDRNGVHVANIMGMRRAVAVLDVRPRYVLTDGFAVA-G 133 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L ++ AVIKGD + IAAAS++AKVTRDR+MR HK+YP+Y F H GY TA H + Sbjct: 134 LGAESLAVIKGDLMVGCIAAASVVAKVTRDRIMRSLHKRYPEYDFAQHKGYVTAAHTAAM 193 Query: 189 KEKGPSCIHRLTFRPLRNLS 208 GP HRL++ + L+ Sbjct: 194 TRYGPCEQHRLSYVNVAALA 213 >gi|300858737|ref|YP_003783720.1| ribonuclease HII [Corynebacterium pseudotuberculosis FRC41] gi|300686191|gb|ADK29113.1| Ribonuclease HII [Corynebacterium pseudotuberculosis FRC41] gi|302206444|gb|ADL10786.1| Ribonuclease HII [Corynebacterium pseudotuberculosis C231] gi|302331000|gb|ADL21194.1| ribonuclease HII [Corynebacterium pseudotuberculosis 1002] Length = 240 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 72/196 (36%), Positives = 104/196 (53%), Gaps = 4/196 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREE 70 E + + + PVAGIDE GRG+ GP+ +AA IL P + DSKK+S + REE Sbjct: 30 TFEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPSRPIAALATLTDSKKLSSRMREE 89 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY I A+ SI S ID++ I A + + A+ L P LID +P L Sbjct: 90 LYPLIKKYAVAWSILHISASEIDRYGIQHANISGMRRAIALLSKQPGYVLIDAMRVP-GL 148 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C + +I GD+ + IAAAS++AK +RD LM ++YP YG H GY T H ++ Sbjct: 149 TCPSLPIIGGDTAARCIAAASVLAKQSRDELMIDLDREYPGYGLGDHKGYGTKSHIDAVR 208 Query: 190 EKGPSCIHRLTFRPLR 205 G + HR ++ ++ Sbjct: 209 RHGGTPEHRYSYANVK 224 >gi|149194772|ref|ZP_01871867.1| Ribonuclease H [Caminibacter mediatlanticus TB-2] gi|149135195|gb|EDM23676.1| Ribonuclease H [Caminibacter mediatlanticus TB-2] Length = 192 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 66/185 (35%), Positives = 98/185 (52%), Gaps = 12/185 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFG--------INDSKKISHKKREELYEKITS 77 + GIDE GRG +AGP+V+A ++ N + + DSKK+S KKREEL+E I Sbjct: 3 ICGIDEAGRGPIAGPLVMAGVMFLMENGKWKMSNEYFEKLTDSKKLSPKKREELFEVIKE 62 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 ++I I ++ IDK + A + + + + + + +I Sbjct: 63 NSIYHIVFIDNETIDKKGLSFAIKFGLNEIISKINAKEYLFDGNTNFGIKKIKP----II 118 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD I+AASI+AKV+RDR M KKYP+Y F H GY T +H +IK+ G S IH Sbjct: 119 KGDLKIKEISAASILAKVSRDRFMIEIDKKYPEYNFKKHKGYITKEHINLIKKYGFSDIH 178 Query: 198 RLTFR 202 R +++ Sbjct: 179 RKSYK 183 >gi|145593863|ref|YP_001158160.1| ribonuclease HII [Salinispora tropica CNB-440] gi|189043656|sp|A4X4I2|RNH2_SALTO RecName: Full=Ribonuclease HII; Short=RNase HII gi|145303200|gb|ABP53782.1| RNase HII [Salinispora tropica CNB-440] Length = 270 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA IL P G+ DSK ++ RE Sbjct: 16 YALERALQRRGFRQVAGADEAGRGACAGPLVAAAAILPPGRRGEVDGLADSKLLTPASRE 75 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +Y ++ + A A P ++ + L Sbjct: 76 RVYAEVIARASAYAVVVIPAAEVDLRGLHVCNLAAMRRALASLATPPEYVLTDGFGVDGL 135 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AV KGD ++ +AAAS++AKVTRDR+M ++P YGF H GY TA+H ++ Sbjct: 136 DVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDLEFPGYGFAEHKGYITAEHSAALR 195 Query: 190 EKGPSCIHRLTFRPL 204 E+GP HR ++ + Sbjct: 196 ERGPCPEHRFSYVNV 210 >gi|330466295|ref|YP_004404038.1| ribonuclease H [Verrucosispora maris AB-18-032] gi|328809266|gb|AEB43438.1| ribonuclease H [Verrucosispora maris AB-18-032] Length = 270 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA +L G+ DSK ++ RE Sbjct: 16 YALERALQRRGFRYVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +Y+++ + A+ A + ++ + L Sbjct: 76 RVYDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTVRPEYVLTDGFGVDGL 135 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AV KGD ++ +AAAS++AKVTRDR+M ++P YGF H GY TA H ++ Sbjct: 136 DVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVDLDAEHPGYGFAEHKGYITADHTAALR 195 Query: 190 EKGPSCIHRLTFRPL 204 E GP HR ++ + Sbjct: 196 EHGPCREHRFSYVNV 210 >gi|305432558|ref|ZP_07401719.1| ribonuclease HII [Campylobacter coli JV20] gi|304444269|gb|EFM36921.1| ribonuclease HII [Campylobacter coli JV20] Length = 202 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 5/192 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E + + GIDE GRGALAGP+++AA L + G+ DSKK+S K+REE Sbjct: 14 TLFEENELLTPFDINLIGIDEAGRGALAGPMMMAACKLHKD--LEGLCDSKKLSEKRREE 71 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 LYE I ++ I + S + ID+ + A L ++ + L DG + Sbjct: 72 LYEIIIKNSNYLILAFSSEKIDEIGLS-ACLKMGLTLIKKHFKTENNFLYDGNTNLGISG 130 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + IK D+ ++AASI+AKV++DR+M K +P Y F+ + Y T H+++I + Sbjct: 131 IK--TQIKADANIKQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKELIAK 188 Query: 191 KGPSCIHRLTFR 202 G +HR +F+ Sbjct: 189 FGICKLHRKSFK 200 >gi|241896010|ref|ZP_04783306.1| ribonuclease HII [Weissella paramesenteroides ATCC 33313] gi|241870741|gb|EER74492.1| ribonuclease HII [Weissella paramesenteroides ATCC 33313] Length = 254 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 74/196 (37%), Positives = 112/196 (57%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E ++ VAGIDEVGRG LAGPVV AA+++D + ++DSK++S K R+ + Sbjct: 59 LNFERKAWQQG-KVVAGIDEVGRGPLAGPVVAAAVVIDDSFDMTIVHDSKQLSEKTRQSI 117 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I + + ID+ NI++A+ A+ +VE L V LID ++ DL Sbjct: 118 DTEIREKVVDFAFGVVDAKDIDRLNIYEASRVAMRQSVEALSVPIDGLLID--AMTVDLE 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD S+SI AASI+AK RD LM+ +++P YGF+ + GY TA+H + Sbjct: 176 IPQEKLIKGDDRSISIGAASILAKNYRDNLMKDFAQQFPGYGFEHNAGYGTAEHLAGLNT 235 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR +F P++ Sbjct: 236 LGITPIHRKSFAPVKK 251 >gi|227499923|ref|ZP_03930016.1| ribonuclease H [Anaerococcus tetradius ATCC 35098] gi|227218032|gb|EEI83305.1| ribonuclease H [Anaerococcus tetradius ATCC 35098] Length = 209 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 76/190 (40%), Positives = 110/190 (57%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +++ V EK +AGIDEVGRG LAGPVV A+I+ ++ G+ DSKK++ KK L Sbjct: 9 DIKRKVHEK-YELIAGIDEVGRGPLAGPVVTCALIMKKDSKIEGVTDSKKLTRKKMLVLK 67 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +KI + + A+ IDK NI AT A+ A+ NL++ P LID I D Sbjct: 68 DKILADCLTYAYGYANSLLIDKLNIKNATHKAMEDALNNLKIRPEIVLIDAERINTD--L 125 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGD I+ ASI+AK+ RD +M K Y YGF++++GY T KH + +++ Sbjct: 126 PQMNIVKGDLNEYVISCASILAKIRRDDIMINFSKIYKGYGFETNMGYGTKKHYEGLEKY 185 Query: 192 GPSCIHRLTF 201 G + IHR TF Sbjct: 186 GETPIHRQTF 195 >gi|330993887|ref|ZP_08317819.1| Ribonuclease HII [Gluconacetobacter sp. SXCC-1] gi|329759155|gb|EGG75667.1| Ribonuclease HII [Gluconacetobacter sp. SXCC-1] Length = 217 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 82/204 (40%), Positives = 116/204 (56%), Gaps = 10/204 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHK 66 P + LE VAG+DEVGRG LAGPVV AA++ P + ++DSKK+ Sbjct: 2 PDYTLEHAHG----GRVAGVDEVGRGPLAGPVVAAAVMFPGSVPGVLADRLDDSKKLKPA 57 Query: 67 KREELYEKITSSAIISISS--ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 R LY+ + +S + I AS I+++NI +A+ A+ AV L P L+DG + Sbjct: 58 LRARLYDVLLASPDVLIGVGAASVAEIERYNILRASWLAMQRAVGRLPRSPEFILVDGNA 117 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P D C A V+ GD ISLSIAAAS++AKV RDRLM +++P YG++ + GY TA H Sbjct: 118 AP-DFGCPAQCVVGGDGISLSIAAASVVAKVIRDRLMARLARRWPAYGWERNAGYGTAIH 176 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208 + + +G S HR F +R + Sbjct: 177 RAGLLAQGASPHHRAAFGTVRRIL 200 >gi|256419897|ref|YP_003120550.1| ribonuclease H [Chitinophaga pinensis DSM 2588] gi|256034805|gb|ACU58349.1| Ribonuclease H [Chitinophaga pinensis DSM 2588] Length = 220 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 73/188 (38%), Positives = 106/188 (56%), Gaps = 1/188 (0%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 +K++ AG DE GRG LAGPV AA+IL P +NDSK++ R++L E + Sbjct: 3 RSYHQKDIAFEAGCDEAGRGCLAGPVFAAAVILPPKFRNKLLNDSKQLKASDRDKLREVV 62 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 AI +++S + ID+ NI KA+ A++ A++ L+ P L+DG Sbjct: 63 EKEAIAYAVASVDNLEIDRINILKASFRAMHLALDQLKQQPGYILVDGNRFVPYGKTPHA 122 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++KGD I SIAAASI+AK RD M H++YP +G+ + GYPT H+ I+ G + Sbjct: 123 CIVKGDGIYASIAAASILAKTYRDEYMHKLHQEYPHFGWLENKGYPTLFHRDAIRAHGET 182 Query: 195 CIHRLTFR 202 HR TFR Sbjct: 183 PYHRKTFR 190 >gi|189184531|ref|YP_001938316.1| ribonuclease HII [Orientia tsutsugamushi str. Ikeda] gi|238692024|sp|B3CUN5|RNH2_ORITI RecName: Full=Ribonuclease HII; Short=RNase HII gi|189181302|dbj|BAG41082.1| ribonuclease HII [Orientia tsutsugamushi str. Ikeda] Length = 205 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 86/199 (43%), Positives = 127/199 (63%), Gaps = 5/199 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P+ +E + +AG+DE GRG LAGPVV AA++++ + + I DSK +S KRE Sbjct: 3 PNLNIEQ---DNASEIIAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRE 59 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 Y+KIT++ SI AS Q IDK+NI +AT A AV+NL +IP L+DG D Sbjct: 60 SCYDKITNNYYYSIGIASVQEIDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTDN 119 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++++GD I SIA+ASI+AKVTRDR+M+I H++YP YG++ + GY T H + IK Sbjct: 120 --RFISIVRGDQICYSIASASIVAKVTRDRMMQILHQEYPVYGWNQNCGYGTKLHIEAIK 177 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + HR++F+ N++ Sbjct: 178 TYGQTIHHRVSFKFKGNIN 196 >gi|153007852|ref|YP_001369067.1| ribonuclease HII [Ochrobactrum anthropi ATCC 49188] gi|166226633|sp|A6WW84|RNH2_OCHA4 RecName: Full=Ribonuclease HII; Short=RNase HII gi|151559740|gb|ABS13238.1| Ribonuclease H [Ochrobactrum anthropi ATCC 49188] Length = 220 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 99/203 (48%), Positives = 132/203 (65%), Gaps = 2/203 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 IP P F E + + + + GIDE GRG LAGPVV AA++LD +N+P G++DSK+++ Sbjct: 13 DIPLAPDFSEEKRLLARGLKHIVGIDEAGRGPLAGPVVAAAVVLDIDNLPNGLDDSKRLT 72 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 KRE LYE I AI +S++S S + ID +I KA L+A+ A L + P ALIDGR Sbjct: 73 AVKREALYETILEKAITVSVASLSARSIDASDIRKAALEAMRRASVGLTLQPCHALIDGR 132 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P LPC A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T K Sbjct: 133 DVPPGLPCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATVK 192 Query: 184 HQQVIKEKGPSC-IHRLTFRPLR 205 H+ I+ GP IHR TF P++ Sbjct: 193 HRAAIETTGPVPGIHRYTFAPIK 215 >gi|296139349|ref|YP_003646592.1| ribonuclease H [Tsukamurella paurometabola DSM 20162] gi|296027483|gb|ADG78253.1| Ribonuclease H [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 81/196 (41%), Positives = 113/196 (57%), Gaps = 4/196 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREE 70 +E+++ + PVAGIDE GRGA AGP+ VAA IL P ++DSKK+S RE Sbjct: 19 TMESVLGRAGLGPVAGIDEAGRGACAGPMTVAACILPRKIPPSLARLDDSKKLSEIARER 78 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +I A+ S+ + +D+ +H A + + A+ LQV P LIDG ++P L Sbjct: 79 LYPEILKHAVSWSVVTIPAAEVDRLGVHVANISGMRRAIATLQVTPGYVLIDGFTVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD+ + IAAAS++AKVTRDR+M Y YGF H GY TA H + Sbjct: 138 GIPSLPVIGGDASASCIAAASVLAKVTRDRVMAELDADYDGYGFAVHKGYSTAAHMAALG 197 Query: 190 EKGPSCIHRLTFRPLR 205 E GPS HR+ ++ +R Sbjct: 198 ELGPSDQHRMRYQNVR 213 >gi|317125409|ref|YP_004099521.1| ribonuclease H [Intrasporangium calvum DSM 43043] gi|315589497|gb|ADU48794.1| Ribonuclease H [Intrasporangium calvum DSM 43043] Length = 264 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 19/213 (8%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHK 66 +P +E ++ +AG+DEVGRGALAGPV V +++D + P G+ DSK ++ + Sbjct: 9 KPSLRVERQLQRAGHRLLAGMDEVGRGALAGPVSVGVVVIDETVRSAPTGVKDSKLLTER 68 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R L +I A+ S+ AS ID I A A A+ L+V+P ++DG Sbjct: 69 ARRGLVPRIQRWAVAYSVGHASPAEIDDIGIMAALRLAGLRALATLEVVPDLVILDGNHD 128 Query: 126 PEDLPC----------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 P +IK D S+AAAS+IAKV RD LM ++P Sbjct: 129 WLTAPYEVGLLAFADAAGPTTPPVTTMIKADLKCSSVAAASVIAKVERDELMVRLGAEHP 188 Query: 170 DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 YG+ + GY +H + GP +HR ++R Sbjct: 189 AYGWTLNKGYSAPEHIDALARIGPCELHRRSWR 221 >gi|305680699|ref|ZP_07403506.1| ribonuclease HII [Corynebacterium matruchotii ATCC 14266] gi|305658904|gb|EFM48404.1| ribonuclease HII [Corynebacterium matruchotii ATCC 14266] Length = 236 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 69/197 (35%), Positives = 98/197 (49%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKR 68 H E + + + PVAG+DE GRGA AGP+ +AA IL P + DSKK+S R Sbjct: 7 HRTFEVALHQAGLGPVAGVDEAGRGACAGPITIAACILPPQPLAALSRLTDSKKLSAATR 66 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L+ I A+ SI S ID++ I A + + V L V P L D + Sbjct: 67 AALFPLIQHHAVAWSILHISAADIDQYGIQHANVFGMRRVVALLDVQPGYVLTDALKVD- 125 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 C +I GD+ + I+AAS++AK RD +M + YP Y F SH GY T H Sbjct: 126 GFACSYLPIIGGDAAARCISAASVLAKHARDLVMAELAETYPRYEFASHKGYGTKVHMTA 185 Query: 188 IKEKGPSCIHRLTFRPL 204 ++ G S +HR ++ + Sbjct: 186 VRRYGASPVHRYSYANV 202 >gi|317059895|ref|ZP_07924380.1| ribonuclease HII [Fusobacterium sp. D12] gi|313685571|gb|EFS22406.1| ribonuclease HII [Fusobacterium sp. D12] Length = 210 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 75/200 (37%), Positives = 110/200 (55%), Gaps = 9/200 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELY 72 E + + + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE L+ Sbjct: 11 YEFDLAK--GEKIIGVDEAGRGPLAGPVVAAATLLKKYDASLEEIQDSKKLTEKKREALF 68 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIPED 128 I + + I AS + I+ +NI AT A+ A+ E + + L+DG + Sbjct: 69 SMIPNYFYVGIGRASVEEIEAYNILNATFLAMRRAIAQLEEQISIEDAIILVDGNFKIRE 128 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + A++KGD+ SLSIA ASI+AKVTRD + K+YP+Y F+ H GY T H++ I Sbjct: 129 CQRKQEAIVKGDAKSLSIATASIMAKVTRDHELLELAKQYPEYHFEKHKGYGTKMHREQI 188 Query: 189 KEKG-PSCIHRLTFRPLRNL 207 G +HR +F ++ L Sbjct: 189 LTLGAIPGVHRNSF-LVKIL 207 >gi|257462226|ref|ZP_05626643.1| ribonuclease HII [Fusobacterium sp. D12] Length = 209 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 75/200 (37%), Positives = 110/200 (55%), Gaps = 9/200 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKREELY 72 E + + + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE L+ Sbjct: 10 YEFDLAK--GEKIIGVDEAGRGPLAGPVVAAATLLKKYDASLEEIQDSKKLTEKKREALF 67 Query: 73 EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSIPED 128 I + + I AS + I+ +NI AT A+ A+ E + + L+DG + Sbjct: 68 SMIPNYFYVGIGRASVEEIEAYNILNATFLAMRRAIAQLEEQISIEDAIILVDGNFKIRE 127 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 + A++KGD+ SLSIA ASI+AKVTRD + K+YP+Y F+ H GY T H++ I Sbjct: 128 CQRKQEAIVKGDAKSLSIATASIMAKVTRDHELLELAKQYPEYHFEKHKGYGTKMHREQI 187 Query: 189 KEKG-PSCIHRLTFRPLRNL 207 G +HR +F ++ L Sbjct: 188 LTLGAIPGVHRNSF-LVKIL 206 >gi|169630303|ref|YP_001703952.1| ribonuclease HII [Mycobacterium abscessus ATCC 19977] gi|238688907|sp|B1MDH9|RNH2_MYCA9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|169242270|emb|CAM63298.1| Ribonuclease HII (RNase HII) [Mycobacterium abscessus] Length = 234 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 111/197 (56%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE + + PVAG+DE GRGA AGP+V+AA +L N +NDSKK++ K RE Sbjct: 19 TLELTLDRVGLGPVAGVDEAGRGACAGPLVIAACVLGSNQRKSLAALNDSKKLTEKMRET 78 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A + S +D+ +H A ++ + AV L V P L DG +P L Sbjct: 79 LFPLICRYAEAYHVVSVPADEVDRIGVHVANIEGMRRAVAGLGVKPGYVLTDGFRVP-GL 137 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + VI GD+ + IAAAS++AKV+RDR+M +P YGF H GY TA H + ++ Sbjct: 138 PVPSLPVIGGDASAACIAAASVLAKVSRDRVMVNMDSDHPGYGFAVHKGYSTAVHTEALR 197 Query: 190 EKGPSCIHRLTFRPLRN 206 GPS HR +F +RN Sbjct: 198 RLGPSAQHRQSFVNVRN 214 >gi|57236923|ref|YP_178038.1| ribonuclease HII [Campylobacter jejuni RM1221] gi|86150560|ref|ZP_01068784.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152389|ref|ZP_01070599.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 260.94] gi|121612583|ref|YP_999729.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81-176] gi|148926828|ref|ZP_01810507.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8486] gi|218561703|ref|YP_002343482.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315123625|ref|YP_004065629.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|11387106|sp|Q9PJA1|RNH2_CAMJE RecName: Full=Ribonuclease HII; Short=RNase HII gi|73621839|sp|Q5HXE7|RNH2_CAMJR RecName: Full=Ribonuclease HII; Short=RNase HII gi|166225180|sp|A1VX88|RNH2_CAMJJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|57165727|gb|AAW34506.1| ribonuclease HII [Campylobacter jejuni RM1221] gi|85839012|gb|EAQ56277.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840686|gb|EAQ57938.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 260.94] gi|87248943|gb|EAQ71905.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81-176] gi|112359409|emb|CAL34191.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844553|gb|EDK21660.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8486] gi|284925313|gb|ADC27665.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni IA3902] gi|315017347|gb|ADT65440.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057450|gb|ADT71779.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni S3] Length = 191 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 5/187 (2%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + + + GIDE GRGALAGP+++AA L+ G+ DSKK+S KKREELYE I Sbjct: 8 KELLNEFDINLIGIDEAGRGALAGPMMMAACKLNK--QLDGLCDSKKLSEKKREELYEII 65 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 ++ I + S + ID + + ++ + ++ + Sbjct: 66 IKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKTENNFLYDGNTNLGING---IKT 122 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H++ I + G Sbjct: 123 QIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEFIAKFGICK 182 Query: 196 IHRLTFR 202 +HR +F+ Sbjct: 183 LHRKSFK 189 >gi|86153986|ref|ZP_01072188.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597652|ref|ZP_01100885.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 84-25] gi|85842524|gb|EAQ59737.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni HB93-13] gi|88189956|gb|EAQ93932.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 84-25] gi|307746973|gb|ADN90243.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni M1] gi|315929937|gb|EFV09094.1| Ribonuclease HII [Campylobacter jejuni subsp. jejuni 305] Length = 191 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 5/187 (2%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + + + GIDE GRGALAGP+++AA L+ G+ DSKK+S KKREELYE I Sbjct: 8 KELLNEFDINLIGIDEAGRGALAGPMMMAACKLNK--QLDGLCDSKKLSEKKREELYEII 65 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 ++ I + S + ID + + ++ + ++ + Sbjct: 66 IKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFKTENNFLYDGNTNLGING---IKT 122 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H++ I + G Sbjct: 123 QIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKEFIAKFGICK 182 Query: 196 IHRLTFR 202 +HR +F+ Sbjct: 183 LHRKSFK 189 >gi|318042659|ref|ZP_07974615.1| ribonuclease HII [Synechococcus sp. CB0101] Length = 200 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 67/185 (36%), Positives = 98/185 (52%), Gaps = 6/185 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG GPV A+IL + G+ DSKK++ ++R +L I Sbjct: 9 LQRIAGVDEVGRGCWFGPVFAGAVILPASARSALAAAGLTDSKKLTARRRAQLVPLIQQH 68 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDLPCQAFAV 136 A ++ AS + ID+ I AT A+ A++ P L+DG V Sbjct: 69 AESWALGQASAREIDQVGIRAATERAMLRALQRLSAPPPGLVLVDGVLPLRLWEGPQQTV 128 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 ++GDS L IAAAS++AK RD L+ +YP YG + H GY TA H+ + E GP+ + Sbjct: 129 VRGDSEHLEIAAASVLAKQARDALITRLAARYPAYGLERHAGYGTALHRAAVLEAGPTPL 188 Query: 197 HRLTF 201 HR +F Sbjct: 189 HRRSF 193 >gi|256784763|ref|ZP_05523194.1| ribonuclease HII [Streptomyces lividans TK24] gi|289768650|ref|ZP_06528028.1| ribonuclease HII [Streptomyces lividans TK24] gi|289698849|gb|EFD66278.1| ribonuclease HII [Streptomyces lividans TK24] Length = 233 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 71/197 (36%), Positives = 110/197 (55%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A I P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKIIAGVDEVGRGAWAGPVTVCAAITGLRRPPVGLTDSKLLTIK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL ++ + ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTELEVELRTWVTSYALGHASPEEIDAMGMTAALRLAAVRALETLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS++AKV RD++M + D+GF + GYP+ H+ Sbjct: 124 YLGAPWRVRTVIKGDQSCIAVAAASVLAKVQRDKMMAELGVDHADFGFADNAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFR 202 ++E+GP+ HRL++ Sbjct: 184 AALEERGPTPHHRLSWA 200 >gi|225021101|ref|ZP_03710293.1| hypothetical protein CORMATOL_01113 [Corynebacterium matruchotii ATCC 33806] gi|224946101|gb|EEG27310.1| hypothetical protein CORMATOL_01113 [Corynebacterium matruchotii ATCC 33806] Length = 236 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 99/197 (50%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKR 68 H E + + + PVAG+DE GRGA AGP+ +AA IL P + DSKK+S R Sbjct: 7 HRTFEVALHQAGLGPVAGVDEAGRGACAGPITIAACILPSQPLAALSRLTDSKKLSAATR 66 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 L+ I A+ SI S ID++ I A + + AV L V P L D + Sbjct: 67 AALFPLIQHHAVAWSILHISAADIDQYGIQHANVFGMRRAVALLDVQPGYVLTDALKVD- 125 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 C +I GD+ + I+AAS++AK RD +M + YP Y F SH GY T H Sbjct: 126 GFACSYLPIIGGDAAARCISAASVLAKHARDLVMAELAETYPRYEFASHKGYGTKVHMTA 185 Query: 188 IKEKGPSCIHRLTFRPL 204 ++ G S +HR ++ + Sbjct: 186 VRRYGASPVHRYSYANV 202 >gi|193211692|ref|YP_001997645.1| ribonuclease HII [Chlorobaculum parvum NCIB 8327] gi|238692672|sp|B3QQY0|RNH2_CHLP8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|193085169|gb|ACF10445.1| Ribonuclease H [Chlorobaculum parvum NCIB 8327] Length = 205 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 89/201 (44%), Positives = 116/201 (57%), Gaps = 7/201 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKR 68 E E + E N+ V GIDE GRG LAGPVV AA+ + P GI +DSKK++ + R Sbjct: 5 EFETPLWE-NLSRVCGIDEAGRGPLAGPVVAAAVAFPRHFKPTGILEKLDDSKKLTAELR 63 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EEL I SA +++ + ID+ NI +AT+ A+ AVE+L P L+DG Sbjct: 64 EELAPAIRESAEAWAVAVVDAEIIDRINILQATMLAMNQAVESLAATPELLLVDGNRFRP 123 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDS SIAAAS++AK RD LM +YP YGFD H GYPTA+H + Sbjct: 124 VLPIPYQTIVKGDSKVFSIAAASVLAKTRRDELMVAYAAEYPAYGFDLHFGYPTARHVEA 183 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 I G IHR +F+ LR L Sbjct: 184 IARHGRCAIHRKSFK-LRKLG 203 >gi|319950993|ref|ZP_08024863.1| ribonuclease HII [Dietzia cinnamea P4] gi|319435336|gb|EFV90586.1| ribonuclease HII [Dietzia cinnamea P4] Length = 235 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 80/198 (40%), Positives = 118/198 (59%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKRE 69 LEA + + + PVAG+DE GRG+ AGP+VVAA +L P ++DSKK++ R+ Sbjct: 28 LALEAALTRRGLGPVAGVDEAGRGSCAGPLVVAACVLGDRLHPELADLDDSKKLTAAARD 87 Query: 70 ELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 L++ + A +S+ ID IH+ ++ + AV L P L DG ++ Sbjct: 88 RLHDAVLRRARAVSVVVIEPDRIDARGIHRCNIEGMRRAVAALDPRPGFVLTDGFAVD-G 146 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L CQ+ AVI GD++ SIAAAS++AKVTRDR+M +YP YGF +H GY T H + I Sbjct: 147 LGCQSTAVIGGDAVVASIAAASVLAKVTRDRIMVDLDSRYPGYGFAAHKGYSTTGHARAI 206 Query: 189 KEKGPSCIHRLTFRPLRN 206 ++ GPS IHR+++ +R Sbjct: 207 EQLGPSDIHRMSYANVRR 224 >gi|21224156|ref|NP_629935.1| ribonuclease HII [Streptomyces coelicolor A3(2)] gi|7227921|sp|O69989|RNH2_STRCO RecName: Full=Ribonuclease HII; Short=RNase HII gi|3036877|emb|CAA18510.1| probable ribonuclease HII [Streptomyces coelicolor A3(2)] Length = 233 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 109/197 (55%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A I P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKIIAGVDEVGRGAWAGPVTVCAAITGLRRPPVGLTDSKLLTIK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL ++ + ++ AS + ID + A A A+ L V P + ++DG+ Sbjct: 64 RRTELEVELRTWVTSYALGHASPEEIDAMGMTAALRLAAVRALGTLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS++AKV RD++M + D+GF + GYP+ H+ Sbjct: 124 YLGAPWRVRTVIKGDQSCIAVAAASVLAKVQRDKMMAELGVDHADFGFADNAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFR 202 ++E+GP+ HRL++ Sbjct: 184 AALEERGPTPHHRLSWA 200 >gi|148269157|ref|YP_001243617.1| ribonuclease HII [Thermotoga petrophila RKU-1] gi|170287819|ref|YP_001738057.1| ribonuclease H [Thermotoga sp. RQ2] gi|281411455|ref|YP_003345534.1| Ribonuclease H [Thermotoga naphthophila RKU-10] gi|166226666|sp|A5IIL8|RNH2_THEP1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|238688861|sp|B1LC19|RNH2_THESQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|147734701|gb|ABQ46041.1| RNase HII [Thermotoga petrophila RKU-1] gi|170175322|gb|ACB08374.1| Ribonuclease H [Thermotoga sp. RQ2] gi|281372558|gb|ADA66120.1| Ribonuclease H [Thermotoga naphthophila RKU-10] Length = 238 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 4/188 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + +K VAG+DE GRG LAGPVV AA++L+ GINDSK++S KRE L+++I Sbjct: 5 ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLFDEIM 62 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A + I AS + ID HNI AT A+ A+ENL V P L+DG+ +L + Sbjct: 63 GKAAVGIGIASPEEIDLHNIFNATKLAMNRALENLSVGPSFVLVDGK--GIELRVPGTCL 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGD S I AASI+AKV RDRLM HK YP + F H GY T +H I++ G I Sbjct: 121 VKGDQKSKLIGAASIVAKVFRDRLMSEFHKMYPQFSFHKHKGYATKEHLNEIRKNGVLPI 180 Query: 197 HRLTFRPL 204 HR++F P+ Sbjct: 181 HRMSFEPV 188 >gi|170760432|ref|YP_001787753.1| ribonuclease HII [Clostridium botulinum A3 str. Loch Maree] gi|189043583|sp|B1KWN1|RNH2_CLOBM RecName: Full=Ribonuclease HII; Short=RNase HII gi|169407421|gb|ACA55832.1| ribonuclease HII [Clostridium botulinum A3 str. Loch Maree] Length = 269 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 119/195 (61%), Gaps = 8/195 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 + + N + +AG+DEVGRG LAGP+V AA++LD F I DSKK+S KK Sbjct: 73 YNFDRRYG--NNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKK 130 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ Sbjct: 131 REELDIIIREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK 190 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +L + +IKGDS S+SIA++SIIAKV RD +M+ K+ YGF+ + GY T +H Q Sbjct: 191 -NLNIRNEFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKELNMYGFNHNAGYGTEEHVQ 249 Query: 187 VIKEKGPSCIHRLTF 201 IK+ GPS IHR++F Sbjct: 250 AIKKYGPSKIHRMSF 264 >gi|126663331|ref|ZP_01734329.1| ribonuclease HII [Flavobacteria bacterium BAL38] gi|126624989|gb|EAZ95679.1| ribonuclease HII [Flavobacteria bacterium BAL38] Length = 219 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 103/203 (50%), Gaps = 21/203 (10%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 N+ G DE GRG LAGPV AAI+L + +NDSK++S K R++L + AI Sbjct: 7 SNLTLEIGTDEAGRGCLAGPVTAAAILLPEHFENTLLNDSKQLSEKNRKKLRPILEELAI 66 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------- 125 +++ ID+ NI A++ A+ ++ L P ++DG Sbjct: 67 SYAVTHIFSNEIDEINILNASMKAMQKSILQLNTKPEYIIVDGNRPLNGKLGMKQKTGKI 126 Query: 126 ------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +++KGD+ LSIAAAS++AK RD M H+++P Y + + GY Sbjct: 127 FSEEEIQFLKSIPNTSIVKGDAKYLSIAAASVLAKTYRDDYMDAIHEEFPMYNWKKNKGY 186 Query: 180 PTAKHQQVIKEKGPSCIHRLTFR 202 PT +H++ IK+ G HR++FR Sbjct: 187 PTVEHREAIKKYGACKYHRMSFR 209 >gi|33241107|ref|NP_876049.1| ribonuclease HII [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|39932302|sp|Q7VA11|RNH2_PROMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|33238637|gb|AAQ00702.1| Ribonuclease HII [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 191 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 79/180 (43%), Positives = 101/180 (56%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT-SSAII 81 AG+DEVGRGAL GPV A+ILD I G+ DSKK+S KR L I S Sbjct: 7 AGLDEVGRGALFGPVFAGAVILDNQAEDQLIDAGLKDSKKLSALKRSNLVPLIKKISHCW 66 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +I +S + ID I AT A+ AV L+ P LIDG + VIKG+ Sbjct: 67 AIGQSSAREIDLLGIRNATEKAMIRAVHRLEKQPDVLLIDGCLNLRLWHGEQKTVIKGED 126 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + SIAAAS++AKV RD L++ +KYP YG + HVGY TA H+ I + G + +HR TF Sbjct: 127 LYPSIAAASVLAKVARDDLIKRMAEKYPQYGLEKHVGYGTALHRAAISKFGKTKLHRKTF 186 >gi|239831265|ref|ZP_04679594.1| Ribonuclease HII [Ochrobactrum intermedium LMG 3301] gi|239823532|gb|EEQ95100.1| Ribonuclease HII [Ochrobactrum intermedium LMG 3301] Length = 281 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 96/204 (47%), Positives = 133/204 (65%), Gaps = 2/204 (0%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 IP P F E + + + + GIDE GRG LAGPVV AA++LD +N+P G++DSK+++ Sbjct: 74 DIPIAPDFSEEKRLLSRGLKHIVGIDEAGRGPLAGPVVAAAVVLDIDNLPDGLDDSKRLT 133 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 +RE LYE I + AI +S++S S + ID +I KA L+A+ A L + P ALIDGR Sbjct: 134 AARREALYEIILAKAITVSVASLSARSIDGSDIRKAALEAMRRASIGLTLRPCHALIDGR 193 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P L C A++KGD S+SIAAASI+AKVTRDR+M A +P YG + H GY T + Sbjct: 194 DVPPGLACPGSALVKGDQRSISIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATER 253 Query: 184 HQQVIKEKGPSC-IHRLTFRPLRN 206 H+ I+ GP IHR TF P+++ Sbjct: 254 HRAAIETAGPVPGIHRYTFAPIKD 277 >gi|148284488|ref|YP_001248578.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong] gi|189043633|sp|A5CDI4|RNH2_ORITB RecName: Full=Ribonuclease HII; Short=RNase HII gi|146739927|emb|CAM79925.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong] Length = 205 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 126/199 (63%), Gaps = 5/199 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P+ +E + VAG+DE GRG LAGPVV AA++++ + + I DSK +S KRE Sbjct: 3 PNLNIEQ---DNASEIVAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRE 59 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 Y+KIT+S SI AS Q IDK+NI +AT A AV+NL +IP L+DG D Sbjct: 60 SCYDKITNSYYYSIGIASVQEIDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTDN 119 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + ++++GD I SI++ASI+AKVTRDR+M+I HK+YP YG++ + GY T H IK Sbjct: 120 --RFISIVRGDQICYSISSASIVAKVTRDRIMQILHKEYPVYGWNQNCGYGTKLHIDAIK 177 Query: 190 EKGPSCIHRLTFRPLRNLS 208 G + HR++F+ N++ Sbjct: 178 TYGQTIHHRVSFKFKGNIN 196 >gi|57504609|ref|ZP_00370721.1| ribonuclease HII [Campylobacter coli RM2228] gi|57019504|gb|EAL56198.1| ribonuclease HII [Campylobacter coli RM2228] Length = 191 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 5/192 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E + + GIDE GRGALAGP+++AA L + G+ DSKK+S K+REE Sbjct: 3 TLFEENELLTPFDINLIGIDEAGRGALAGPMMMAACKLHKD--LEGLCDSKKLSEKRREE 60 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 LYE I + I + S + ID+ + A L ++ + L DG + Sbjct: 61 LYEIILLHSDYLILAFSSEKIDEIGLS-ACLKMGLTLIKKHFKTENNFLYDGNTNLGISG 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + IK D+ ++AASI+AKV++DR+M K +P Y F+ + Y T H+++I + Sbjct: 120 IK--TQIKADANIKQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKELIAK 177 Query: 191 KGPSCIHRLTFR 202 G +HR +F+ Sbjct: 178 FGICKLHRKSFK 189 >gi|258546183|ref|ZP_05706417.1| ribonuclease HII [Cardiobacterium hominis ATCC 15826] gi|258518608|gb|EEV87467.1| ribonuclease HII [Cardiobacterium hominis ATCC 15826] Length = 190 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 105/182 (57%), Gaps = 2/182 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT-SSAIISI 83 +AG+DE GRGAL G V+ AA+IL + + DSKK+S ++RE LY IT + S Sbjct: 1 MIAGVDEAGRGALVGNVIAAAVILPASYELPDLTDSKKLSARQREALYAAITAQAVAWSA 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 ++A+ ID NIH ATL A+ A+ L P ALIDG L A A++ GD+ Sbjct: 61 AAATPAEIDTLNIHHATLLAMQRALAALNPPPSQALIDG-KFTPTLAIPARAIVGGDASE 119 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 IAAASIIAKVTRDR M +YP YGF +H GY T H + G + HR ++ P Sbjct: 120 ACIAAASIIAKVTRDREMLALEARYPGYGFATHKGYGTQAHLAALARLGATPEHRRSYAP 179 Query: 204 LR 205 +R Sbjct: 180 VR 181 >gi|317058954|ref|ZP_07923439.1| ribonuclease HII [Fusobacterium sp. 3_1_5R] gi|313684630|gb|EFS21465.1| ribonuclease HII [Fusobacterium sp. 3_1_5R] Length = 211 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 81/203 (39%), Positives = 115/203 (56%), Gaps = 13/203 (6%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKRE 69 F++E + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE Sbjct: 12 DFDVEK------GEKIVGVDEAGRGPLAGPVVAAATLLKQYDRSLDSIQDSKKLTEKKRE 65 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSI 125 L+ I + I AS + I+K+NI AT A+ A+ E +++ + L+DG Sbjct: 66 ALFSVIPQFFYVGIGQASVEEIEKYNILNATFLAMRRALANLEEQVEIQDATILVDGNFT 125 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + + AV+KGD+ SLSIAAASI+AKVTRD + K+YPDY F+ H GY T H+ Sbjct: 126 IRECQRKQEAVVKGDAKSLSIAAASIMAKVTRDHKLVELAKQYPDYLFEKHKGYGTKVHR 185 Query: 186 QVIKEKGPSC-IHRLTFRPLRNL 207 + I GP +HR +F ++ L Sbjct: 186 EKILSLGPIPGVHRDSF-LVKIL 207 >gi|257452411|ref|ZP_05617710.1| ribonuclease HII [Fusobacterium sp. 3_1_5R] Length = 210 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 81/203 (39%), Positives = 115/203 (56%), Gaps = 13/203 (6%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP-NNIPFGINDSKKISHKKRE 69 F++E + G+DE GRG LAGPVV AA +L + I DSKK++ KKRE Sbjct: 11 DFDVEK------GEKIVGVDEAGRGPLAGPVVAAATLLKQYDRSLDSIQDSKKLTEKKRE 64 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAV----ENLQVIPRSALIDGRSI 125 L+ I + I AS + I+K+NI AT A+ A+ E +++ + L+DG Sbjct: 65 ALFSVIPQFFYVGIGQASVEEIEKYNILNATFLAMRRALANLEEQVEIQDATILVDGNFT 124 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 + + AV+KGD+ SLSIAAASI+AKVTRD + K+YPDY F+ H GY T H+ Sbjct: 125 IRECQRKQEAVVKGDAKSLSIAAASIMAKVTRDHKLVELAKQYPDYLFEKHKGYGTKVHR 184 Query: 186 QVIKEKGPSC-IHRLTFRPLRNL 207 + I GP +HR +F ++ L Sbjct: 185 EKILSLGPIPGVHRDSF-LVKIL 206 >gi|159036847|ref|YP_001536100.1| ribonuclease HII [Salinispora arenicola CNS-205] gi|189043653|sp|A8M684|RNH2_SALAI RecName: Full=Ribonuclease HII; Short=RNase HII gi|157915682|gb|ABV97109.1| Ribonuclease H [Salinispora arenicola CNS-205] Length = 269 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 91/195 (46%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA +L G+ DSK ++ RE Sbjct: 16 YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAVLPEGRRGEIDGLADSKLLTPASRE 75 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +Y ++ + A+ A ++ + L Sbjct: 76 RVYAEVVARALAYAVVVIPAAEVDLRGLHVCNLAAMRRALASLATAPEYVLTDGFGVDGL 135 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AV KGD ++ +AAAS++AKVTRDR+M +P YGF H GY TA+H ++ Sbjct: 136 DVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDTTFPGYGFAEHKGYITAEHSAALR 195 Query: 190 EKGPSCIHRLTFRPL 204 E+GP HR ++ + Sbjct: 196 ERGPCPEHRFSYVNV 210 >gi|34558029|ref|NP_907844.1| ribonuclease HII RNase HII [Wolinella succinogenes DSM 1740] gi|34483747|emb|CAE10744.1| RIBONUCLEASE HII RNASE HII [Wolinella succinogenes] Length = 183 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 92/184 (50%), Gaps = 7/184 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISIS 84 + GIDE GRG LAG + VA ++L G+ DSKK+S K R LY++I +A I Sbjct: 2 RICGIDEAGRGTLAGSLFVAGVVL--EIEIEGLRDSKKLSKKNRFRLYDEIVQNASFHIV 59 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 +S Q +D + ++I + + + +I+GDS+ Sbjct: 60 ESSAQKVDSLGLGICLRESILEICTQVSADSYIMDGNTSFGVQG----VETLIRGDSLLP 115 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AK ++DR M + +P+YGF H GY T H + I G S HR +F+ L Sbjct: 116 CISAASILAKASKDREMERLDRLHPEYGFAKHCGYGTKAHLEAILHLGYSPFHRQSFK-L 174 Query: 205 RNLS 208 + L Sbjct: 175 KRLL 178 >gi|38234094|ref|NP_939861.1| ribonuclease HII [Corynebacterium diphtheriae NCTC 13129] gi|73917606|sp|Q6NGJ8|RNH2_CORDI RecName: Full=Ribonuclease HII; Short=RNase HII gi|38200356|emb|CAE50042.1| ribonuclease HII [Corynebacterium diphtheriae] Length = 229 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 71/196 (36%), Positives = 102/196 (52%), Gaps = 4/196 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREE 70 E + + + PVAG+DE GRG+ GP+ +AA I+ P + DSKK+S KR E Sbjct: 23 TFEVTLDKHGLGPVAGVDEAGRGSCCGPITIAACIMPQRPIAQLQALTDSKKLSAAKRAE 82 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY I A SI S ID+ I A + + A+E L V P L D +P L Sbjct: 83 LYPLIKKYALAWSIIHISAAEIDREGIQHANIFGMRRAIEKLDVAPGYVLTDAMKVP-GL 141 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 C + +I GD+ IAAAS++AK +RD +M KYP+YG + H GY T H ++ Sbjct: 142 RCPSLPIIGGDAAVRCIAAASVLAKHSRDLIMDDLGGKYPEYGLEDHKGYGTKSHMDAVR 201 Query: 190 EKGPSCIHRLTFRPLR 205 G + HR ++ ++ Sbjct: 202 HHGATPEHRYSYSNVK 217 >gi|145218837|ref|YP_001129546.1| ribonuclease H [Prosthecochloris vibrioformis DSM 265] gi|189043641|sp|A4SC35|RNH2_PROVI RecName: Full=Ribonuclease HII; Short=RNase HII gi|145205001|gb|ABP36044.1| RNase HII [Chlorobium phaeovibrioides DSM 265] Length = 205 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 79/202 (39%), Positives = 109/202 (53%), Gaps = 8/202 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKK 67 + E + M + GIDE GRG LAGPVV AA++ P +NDSKK+S Sbjct: 4 DYEEQLWNS-MERICGIDEAGRGPLAGPVVAAAVVFPRWFRPGKGILGRMNDSKKLSPSL 62 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R E+ I +A S+S Q ID+ NI AT+ A+ AV L + P L+DG Sbjct: 63 RREMAPAIQDAALAWSVSVVDAQTIDRINILSATMLAMNRAVGGLGLTPDMLLVDGNRFS 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + P ++ GD+ SIAAAS++AK RD +M + YP+YGF H GYPTA H Sbjct: 123 PETPVAYRTLVGGDAYIYSIAAASVLAKTARDAIMSSYDRDYPEYGFARHAGYPTAMHIS 182 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 I++ G IHR +F+ +R L+ Sbjct: 183 AIRQHGRCPIHRFSFK-VRRLN 203 >gi|114328522|ref|YP_745679.1| ribonuclease HII [Granulibacter bethesdensis CGDNIH1] gi|122326524|sp|Q0BQZ6|RNH2_GRABC RecName: Full=Ribonuclease HII; Short=RNase HII gi|114316696|gb|ABI62756.1| ribonuclease HII [Granulibacter bethesdensis CGDNIH1] Length = 219 Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 86/205 (41%), Positives = 113/205 (55%), Gaps = 11/205 (5%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISH 65 P LE VAG+DEVGRG LAGPVV AA++L + P I+DSKK+ Sbjct: 12 PDDRLEREAG----GLVAGVDEVGRGPLAGPVVAAAVLLPASGFPAHLAGLIDDSKKLDA 67 Query: 66 KKREELYEKITSSAIISISS--ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 R+ + + + I+I AS I + NI A++ A+ AVE L IP AL+DG Sbjct: 68 AARDRAFAALLAEPGITIGIGAASVTEIGRLNILHASMLAMRRAVERLPTIPDLALVDGN 127 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P C A V+ GD+ LSIAAASIIAKV RDR M ++YP YG++ + GYPT Sbjct: 128 RAPALP-CAARCVVGGDAKCLSIAAASIIAKVVRDRAMARLARRYPVYGWERNAGYPTPA 186 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNLS 208 H+ + E GP+ HR F +R L Sbjct: 187 HRAGLTEFGPTPHHRTAFGLVRQLL 211 >gi|157414331|ref|YP_001481587.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81116] gi|172046982|sp|A8FJH3|RNH2_CAMJ8 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157385295|gb|ABV51610.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 81116] gi|315931297|gb|EFV10266.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 327] Length = 191 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 5/187 (2%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + + + GIDE GRGALAGP+++AA L+ G+ DSKK+S KKREELYE I Sbjct: 8 KELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKK--LDGLCDSKKLSEKKREELYEII 65 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 ++ I + S + ID + + ++ + ++ + Sbjct: 66 IKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKTENNFLYDGNTNLGING---IKT 122 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H+++I + G Sbjct: 123 QIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICK 182 Query: 196 IHRLTFR 202 +HR +F+ Sbjct: 183 LHRKSFK 189 >gi|145352696|ref|XP_001420674.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580909|gb|ABO98967.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 189 Score = 154 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 3/190 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E E V G+DE GRG LAGPVV AA + + + +NDSK+++ + REE++E Sbjct: 1 HEKKHWEAGRHRVVGVDEAGRGPLAGPVVAAACFVPKDCVVDCVNDSKQLTEEGREEIFE 60 Query: 74 KITSSAI--ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ ++ + ID+ NI + T++A++ + ++ LIDG +P+ L Sbjct: 61 ELMANKDIEYGVCVIDQDRIDEINILECTMEAMHRSAADV-PNVDWVLIDGNRVPKPLEG 119 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 +A A++KGD+ +++IAAASIIAKVTRDR+M K++P YGF H GY T H I + Sbjct: 120 KAEAIVKGDAKNVAIAAASIIAKVTRDRMMLEIDKEFPMYGFKDHKGYGTKAHMAAIDKH 179 Query: 192 GPSCIHRLTF 201 GP HR TF Sbjct: 180 GPCVYHRKTF 189 >gi|283953657|ref|ZP_06371188.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 414] gi|283794698|gb|EFC33436.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 414] Length = 198 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 5/187 (2%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + + + GIDE GRGALAGP+++AA L+ G+ DSKK+S KKREELYE I Sbjct: 15 KELLNEFDINLIGIDEAGRGALAGPMMMAACKLNK--QLDGLCDSKKLSEKKREELYEII 72 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 ++ I + S + ID + + ++ + ++ + Sbjct: 73 IKNSSYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKTENNFLYDGNTNLGING---IKT 129 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H+++I + G Sbjct: 130 QIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICK 189 Query: 196 IHRLTFR 202 +HR +F+ Sbjct: 190 LHRKSFK 196 >gi|251780020|ref|ZP_04822940.1| ribonuclease HII [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084335|gb|EES50225.1| ribonuclease HII [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 271 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 111/195 (56%), Gaps = 8/195 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 +E + E VAG+DEVGRG LAGP+V ++ILD + +NDSKK++H K Sbjct: 75 YEFDKSFGE--FKYVAGVDEVGRGPLAGPIVACSVILDLNVIDEELILYLNDSKKLNHIK 132 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL I A SIS +S++ ID+ I + + NL + P L DG + Sbjct: 133 REELAIIIKEKALAYSISLSSNKEIDERGIAYCNNNVFLDSCNNLSIKPELVLSDGYLVK 192 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 ++ VIKGD+ S SIAAASI+AKV RD LM+ KYP Y F++++GY T KH Sbjct: 193 -NIDIANKFVIKGDTKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTQKHID 251 Query: 187 VIKEKGPSCIHRLTF 201 +K+ G IHR +F Sbjct: 252 GLKKYGKCEIHRNSF 266 >gi|255319657|ref|ZP_05360866.1| ribonuclease HII [Acinetobacter radioresistens SK82] gi|262378546|ref|ZP_06071703.1| ribonuclease HII [Acinetobacter radioresistens SH164] gi|255303274|gb|EET82482.1| ribonuclease HII [Acinetobacter radioresistens SK82] gi|262299831|gb|EEY87743.1| ribonuclease HII [Acinetobacter radioresistens SH164] Length = 191 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 82/182 (45%), Positives = 111/182 (60%), Gaps = 1/182 (0%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISIS 84 +AG+DE GRG L G VV AA+ILDP G+NDSKK++ KKRE+L+ +I A I+ Sbjct: 3 IAGVDEAGRGPLVGAVVAAAVILDPARPIEGLNDSKKLTEKKREKLFVEIQEKALAWYIA 62 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID+ NI +A+L A+ AVE L + P L+DG P L AV+ GD++ Sbjct: 63 EASATEIDEINILQASLLAMRRAVEGLSIQPDKVLVDGNKEPAGLQMSCEAVVGGDALYQ 122 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 I+AASI+AKV RDR M + ++YP YGF H GYPT H + I G HR ++ P+ Sbjct: 123 EISAASILAKVARDRQMVLLDQRYPHYGFAKHKGYPTKAHFEAIGIHGVIDEHRRSYAPV 182 Query: 205 RN 206 + Sbjct: 183 KK 184 >gi|188588936|ref|YP_001920597.1| ribonuclease HII [Clostridium botulinum E3 str. Alaska E43] gi|188499217|gb|ACD52353.1| ribonuclease HII [Clostridium botulinum E3 str. Alaska E43] Length = 271 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 81/195 (41%), Positives = 111/195 (56%), Gaps = 8/195 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 +E + E VAG+DEVGRG LAGP+V ++ILD + +NDSKK++H K Sbjct: 75 YEFDKSFGE--FKYVAGVDEVGRGPLAGPIVACSVILDLNVIDEELILYLNDSKKLNHIK 132 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL I A SIS +S++ ID+ I + + NL + P L DG + Sbjct: 133 REELAIIIKEKALAYSISLSSNKEIDERGIAYCNNNVFLDSCNNLSIKPELVLSDGYLVK 192 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 ++ VIKGD+ S SIAAASI+AKV RD LM+ KYP Y F++++GY T KH Sbjct: 193 -NIDIANKFVIKGDTKSASIAAASILAKVYRDNLMKEYSIKYPHYDFENNMGYGTQKHID 251 Query: 187 VIKEKGPSCIHRLTF 201 +K+ G IHR +F Sbjct: 252 GLKKYGKCEIHRNSF 266 >gi|182416696|ref|ZP_02948097.1| ribonuclease HII [Clostridium butyricum 5521] gi|237668559|ref|ZP_04528543.1| ribonuclease HII (RNase HII) [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379458|gb|EDT76951.1| ribonuclease HII [Clostridium butyricum 5521] gi|237656907|gb|EEP54463.1| ribonuclease HII (RNase HII) [Clostridium butyricum E4 str. BoNT E BL5262] Length = 273 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 81/202 (40%), Positives = 110/202 (54%), Gaps = 10/202 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 + + + +AG+DEVGRG LAGP+V ++LD + + +NDSKK+ K Sbjct: 74 YAFDKSFGD--YKHIAGVDEVGRGPLAGPIVACCVMLDLNVLDDELILYLNDSKKLKESK 131 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL E I A IS S+ ID+ I A + +L + P L DG + Sbjct: 132 REELAEIIKEKAVCFKISECSNYEIDEIGIGVANNKVFLESCNSLSIKPDLVLSDGYLVK 191 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + + +VIKGD+ S IAAASIIAKV RD LM+ KKY Y F+++ GY TAKH Sbjct: 192 -GIEIENKSVIKGDTKSACIAAASIIAKVYRDNLMKEYAKKYSCYDFENNAGYGTAKHMN 250 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 I+E G IHR +F L+NL Sbjct: 251 AIREHGKCEIHRNSF--LKNLL 270 >gi|254513857|ref|ZP_05125918.1| ribonuclease HII [gamma proteobacterium NOR5-3] gi|219676100|gb|EED32465.1| ribonuclease HII [gamma proteobacterium NOR5-3] Length = 204 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 86/198 (43%), Positives = 125/198 (63%), Gaps = 3/198 (1%) Query: 10 PHFELEAMVREKNMW-PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKR 68 P + EA + + + G+DEVGRG LAG VV AA++L+ + G+ DSKK++ ++R Sbjct: 2 PLSDWEAALGDLPEEACIVGVDEVGRGPLAGDVVAAAVVLNSADPIDGLADSKKLTARRR 61 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L E++ A +++ A+ + ID NI +A+L A++ AV+ L + P L+DGR +P Sbjct: 62 EALSEQLHLRAHGVALGLATPEEIDDLNILQASLLAMWRAVDALGMTPDLVLVDGRQLPR 121 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + AVIKGDS IAAASI+AKV RDR M H ++P YGFD+H GYPTA H Sbjct: 122 -WNHPSIAVIKGDSRVPQIAAASIVAKVARDRYMCEQHLRWPMYGFDAHKGYPTAAHLAA 180 Query: 188 IKEKGPSCIHRLTFRPLR 205 ++E G S +HR +F P+R Sbjct: 181 LREHGVSPLHRRSFAPVR 198 >gi|87199856|ref|YP_497113.1| ribonuclease H [Novosphingobium aromaticivorans DSM 12444] gi|97189114|sp|Q2G794|RNH2_NOVAD RecName: Full=Ribonuclease HII; Short=RNase HII gi|87135537|gb|ABD26279.1| RNase HII [Novosphingobium aromaticivorans DSM 12444] Length = 196 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 11/193 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE GRG LAGPVV AA++L P G++DSKK+S +R EL EKI ++ Sbjct: 4 IGVDEAGRGPLAGPVVAAAVVLCK-PRPSGLDDSKKLSAARRAELEEKIKRRCRWAVGVV 62 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS----------IPEDLPCQAFAV 136 ID+ NI AT+ A+ AV L G + A + Sbjct: 63 EPDEIDRLNIFGATMLAMTLAVGALCEQLAHDEDVGEVLVDGNLTPHGRRPEWCWPARPI 122 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD++ I+AASIIAK RDRLMR A +P YG++ + GY T +H ++E GP+ + Sbjct: 123 VGGDALEPCISAASIIAKEHRDRLMREAALAHPHYGWERNAGYGTPEHLAALREHGPTPL 182 Query: 197 HRLTFRPLRNLSV 209 HR +F P+ L + Sbjct: 183 HRRSFAPVAQLQL 195 >gi|283956188|ref|ZP_06373673.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 1336] gi|283792342|gb|EFC31126.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni 1336] Length = 191 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 5/187 (2%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + + + GIDE GRGALAGP+++AA L+ G+ DSKK+S KKREELYE I Sbjct: 8 KELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKK--LDGLCDSKKLSEKKREELYEII 65 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 ++ I + S + ID + + ++ + ++ + Sbjct: 66 IKNSNYLILAFSSEQIDALGLSTCLKTGLKLIKKHFKTENNFLYDGNTNLGING---IKT 122 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 IK D+ L ++AASI+AKV++DR+M K +P Y F+ + Y T H+++I + G Sbjct: 123 QIKADTSILQVSAASILAKVSKDRVMNFLAKDFPYYEFEKNKAYGTKAHKKLIAKFGICK 182 Query: 196 IHRLTFR 202 +HR +F+ Sbjct: 183 LHRKSFK 189 >gi|39932283|sp|Q7U4C6|RNH2_SYNPX RecName: Full=Ribonuclease HII; Short=RNase HII Length = 224 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 103/184 (55%), Gaps = 5/184 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS 78 VAG+DEVGRG L GPV A++L+ N G+ DSK++S ++R +L I Sbjct: 35 HRGVAGVDEVGRGCLFGPVFAGAVVLEAANASRLQQEGLTDSKRLSARRRGDLVPLIEHE 94 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A + +S + ID+ I AT A+ A++ L P L+DG + +++ Sbjct: 95 AEAWGLGQSSTREIDRLGIRPATELAMLRALQRLPNRPELVLVDGNLPLRPWTGEQRSIV 154 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD SL+IAAAS+IAK RD LM+ +++P YG + H GY TA H+ + + GPS +H Sbjct: 155 AGDQHSLAIAAASVIAKQCRDALMQRLSQRFPGYGLERHAGYGTALHRAALLDLGPSALH 214 Query: 198 RLTF 201 R +F Sbjct: 215 RRSF 218 >gi|33866676|ref|NP_898235.1| ribonuclease HII [Synechococcus sp. WH 8102] gi|33633454|emb|CAE08659.1| ribonuclease HII [Synechococcus sp. WH 8102] Length = 239 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 103/184 (55%), Gaps = 5/184 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS 78 VAG+DEVGRG L GPV A++L+ N G+ DSK++S ++R +L I Sbjct: 50 HRGVAGVDEVGRGCLFGPVFAGAVVLEAANASRLQQEGLTDSKRLSARRRGDLVPLIEHE 109 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A + +S + ID+ I AT A+ A++ L P L+DG + +++ Sbjct: 110 AEAWGLGQSSTREIDRLGIRPATELAMLRALQRLPNRPELVLVDGNLPLRPWTGEQRSIV 169 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD SL+IAAAS+IAK RD LM+ +++P YG + H GY TA H+ + + GPS +H Sbjct: 170 AGDQHSLAIAAASVIAKQCRDALMQRLSQRFPGYGLERHAGYGTALHRAALLDLGPSALH 229 Query: 198 RLTF 201 R +F Sbjct: 230 RRSF 233 >gi|311113471|ref|YP_003984693.1| ribonuclease HII [Rothia dentocariosa ATCC 17931] gi|310944965|gb|ADP41259.1| ribonuclease HII [Rothia dentocariosa ATCC 17931] Length = 264 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 100/232 (43%), Gaps = 40/232 (17%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKR 68 + E E + +AG+DEVGRGALAGPV V +LD N G+ DSK ++ K+R Sbjct: 5 NLEHEQKLFTAGYRLIAGLDEVGRGALAGPVSVGVAVLDQQNQQILEGLTDSKALTPKRR 64 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSI 125 E L +I +I + ID + A A A+ + + P + L+DG+ Sbjct: 65 EALIPRIQKWCSYAIGHTTPAEIDVLGMTYALRLAAQRALADLAHRGLYPEAVLLDGKHD 124 Query: 126 P-----------------------------------EDLPCQAFAVIKGDSISLSIAAAS 150 + +IKGD SIAAAS Sbjct: 125 WLSPQPANLLDSIDPVYRRYEELLHRIWNGANSAAEKGWSGPVTTIIKGDYQCASIAAAS 184 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AKV RD M + P YG+ + GY + H+Q I E GPS HRL++ Sbjct: 185 VVAKVDRDAFMESLSAENPHYGWAKNKGYGSVAHRQAISEYGPSIYHRLSWS 236 >gi|224372133|ref|YP_002606505.1| ribonuclease HII [Nautilia profundicola AmH] gi|223589086|gb|ACM92822.1| ribonuclease HII [Nautilia profundicola AmH] Length = 196 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 67/187 (35%), Positives = 94/187 (50%), Gaps = 14/187 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN----------NIPFGINDSKKISHKKREELYEKI 75 + GIDE GRG +AGP+VVA I N +NDSKK++ KKREEL+E I Sbjct: 5 ICGIDEAGRGPIAGPLVVAGCIFKNEKLKVKSEKWENFLQKLNDSKKLNAKKREELFEII 64 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 + I ++ ID+ + A A+ + L+ + + Sbjct: 65 QETCEYHIVFVDNKTIDEKGLSFAINYALNEIKKTLKANKYLFDGNSNFGVKG----IET 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +IKGD I+AASI+AKV+RD+ M KYP Y F H GY T +H + IK+ G S Sbjct: 121 LIKGDGKIKQISAASILAKVSRDKYMLEIADKYPMYNFKKHKGYITKEHIEEIKKNGFSD 180 Query: 196 IHRLTFR 202 IHR ++R Sbjct: 181 IHRKSYR 187 >gi|172040491|ref|YP_001800205.1| hypothetical protein cur_0811 [Corynebacterium urealyticum DSM 7109] gi|171851795|emb|CAQ04771.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 241 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 76/190 (40%), Positives = 108/190 (56%), Gaps = 4/190 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKI 75 +R VAG+DE GRGA GP+ +A+ IL + +P G+NDSKK++ K+RE L+ I Sbjct: 33 LRFHGFSHVAGVDEAGRGACCGPITIASCILPDHGVPELAGLNDSKKLTPKRRERLFGAI 92 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 T A+ I ID+ I A ++ +Y V L V P L D +L C+ Sbjct: 93 TEHAVAYEIVHIPAAEIDQRGIQYANINGMYRVVAGLGVEPDVVLTDAV-HLPELACEHA 151 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++KGD++S +I+AASI+AKV+RDRLM +KYP YG H GY TAKH ++ G Sbjct: 152 PLVKGDALSPAISAASILAKVSRDRLMVEMAEKYPGYGLAGHKGYGTAKHMAAVRLHGAC 211 Query: 195 CIHRLTFRPL 204 HR T+ + Sbjct: 212 PEHRYTYSNV 221 >gi|311739721|ref|ZP_07713556.1| ribonuclease HII [Corynebacterium pseudogenitalium ATCC 33035] gi|311305537|gb|EFQ81605.1| ribonuclease HII [Corynebacterium pseudogenitalium ATCC 33035] Length = 213 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREE 70 E + + + PVAG+DE GRGA GP+ +AA ++ I + DSKK++ K+RE+ Sbjct: 9 TYEVALSKAGLGPVAGVDEAGRGACCGPITIAACVMPDRPIKELAQLTDSKKLTPKQREK 68 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A S+ IDK I A + + AV L+ P ++ L Sbjct: 69 LFPLIKDKAVDWSVVHIGAGDIDKRGIQHANISGMRRAVARLEARPGY-VLTDALFIPGL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +I GD+ + IAAAS++AKV+RD LM +YP YG SH GY T H+ I Sbjct: 128 TQPHLPIIGGDAAARCIAAASVLAKVSRDHLMHELDVRYPGYGLASHKGYGTKAHEAAIA 187 Query: 190 EKGPSCIHRLTFRPLRN 206 G HR+++ +R Sbjct: 188 ALGACPEHRMSYENVRR 204 >gi|226949794|ref|YP_002804885.1| ribonuclease HII [Clostridium botulinum A2 str. Kyoto] gi|226842944|gb|ACO85610.1| ribonuclease HII [Clostridium botulinum A2 str. Kyoto] gi|322806706|emb|CBZ04275.1| ribonuclease HII [Clostridium botulinum H04402 065] Length = 269 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 84/185 (45%), Positives = 116/185 (62%), Gaps = 6/185 (3%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS 77 N + +AG+DEVGRG LAGP+V AA++LD F I DSKK+S KKREEL I Sbjct: 81 NNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDIIIRE 140 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ +L + + Sbjct: 141 KAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK-NLNIRNEFI 199 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q IK+ GPS I Sbjct: 200 IKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKHGPSKI 259 Query: 197 HRLTF 201 HR++F Sbjct: 260 HRMSF 264 >gi|166364262|ref|YP_001656535.1| ribonuclease HII [Microcystis aeruginosa NIES-843] gi|189043628|sp|B0JV09|RNH2_MICAN RecName: Full=Ribonuclease HII; Short=RNase HII gi|166086635|dbj|BAG01343.1| ribonuclease HII [Microcystis aeruginosa NIES-843] Length = 208 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 78/189 (41%), Positives = 108/189 (57%), Gaps = 12/189 (6%) Query: 25 PVAGIDEVGRGALAGPVV--------VAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 +AG+DEVGRGAL GPVV L G+ DSK++S +KR++L +I Sbjct: 6 LIAGVDEVGRGALFGPVVAAVVVTVPSGFARL----WELGVKDSKQLSPQKRQKLSRQIQ 61 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 + I A+ + ID+ NI A+L A+ A+ L + P +DG+ I +DL AV Sbjct: 62 RDFVCRIGYATVKEIDRLNIFHASLLAMSRAIGKLPLSPSLCWVDGKHIIKDLSIPQKAV 121 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I+GD S IAAASI+AKV RD L+ H++YPDYG H GY TA+H + I G + Sbjct: 122 IQGDQQSPVIAAASIVAKVWRDDLITRWHRRYPDYGLARHKGYGTAQHLEAIGNYGLTSQ 181 Query: 197 HRLTFRPLR 205 HRL+F P + Sbjct: 182 HRLSFSPCQ 190 >gi|227549010|ref|ZP_03979059.1| ribonuclease HII [Corynebacterium lipophiloflavum DSM 44291] gi|227078920|gb|EEI16883.1| ribonuclease HII [Corynebacterium lipophiloflavum DSM 44291] Length = 213 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 59/196 (30%), Positives = 85/196 (43%), Gaps = 2/196 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREE 70 E + + + PVAG+DE GRGA GPV VAA +L P G+ DSK++ R Sbjct: 9 TYEVALDKAGLGPVAGVDEAGRGACFGPVTVAACVLPPRPLAQLDGLTDSKQLRPVARAS 68 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 LY+ I A+ + ++ L Sbjct: 69 LYDAICDVALSFAVVHIPAAEIDRRGIQVANVDGARRAVAKLGARPGYVLVDALRVPGLT 128 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +I GDS + IAAAS++AKV+RDRL+ ++Y DYG H GY T H ++ Sbjct: 129 APQLPIIGGDSTARCIAAASVLAKVSRDRLVTEMAQRYADYGIAGHKGYGTQAHMAAVRR 188 Query: 191 KGPSCIHRLTFRPLRN 206 G S HR ++ +R Sbjct: 189 YGASDEHRYSYANVRQ 204 >gi|153940580|ref|YP_001391739.1| ribonuclease HII [Clostridium botulinum F str. Langeland] gi|170755844|ref|YP_001781984.1| ribonuclease HII [Clostridium botulinum B1 str. Okra] gi|189043581|sp|B1II72|RNH2_CLOBK RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043582|sp|A7GG29|RNH2_CLOBL RecName: Full=Ribonuclease HII; Short=RNase HII gi|152936476|gb|ABS41974.1| ribonuclease HII [Clostridium botulinum F str. Langeland] gi|169121056|gb|ACA44892.1| ribonuclease HII [Clostridium botulinum B1 str. Okra] gi|295319764|gb|ADG00142.1| ribonuclease HII [Clostridium botulinum F str. 230613] Length = 269 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 8/195 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 + + N + +AG+DEVGRG LAGP+V AA++LD F I DSKK+S KK Sbjct: 73 YNFDRRYG--NNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKK 130 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ Sbjct: 131 REELDIIIREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK 190 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +L + +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q Sbjct: 191 -NLNIRNEFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQ 249 Query: 187 VIKEKGPSCIHRLTF 201 IK+ GPS IHR++F Sbjct: 250 AIKKYGPSKIHRMSF 264 >gi|85373281|ref|YP_457343.1| ribonuclease HII [Erythrobacter litoralis HTCC2594] gi|122545127|sp|Q2NCP5|RNH2_ERYLH RecName: Full=Ribonuclease HII; Short=RNase HII gi|84786364|gb|ABC62546.1| ribonuclease HII [Erythrobacter litoralis HTCC2594] Length = 212 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 73/189 (38%), Positives = 105/189 (55%), Gaps = 9/189 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 V G+DE GRG LAGPVV AA++L + P G++DSKK++ K+R L E I + + Sbjct: 18 GCVFGVDEAGRGPLAGPVVAAAVVLG-DAYPKGLDDSKKLTAKRRAVLDEDIRKTCGWGV 76 Query: 84 SSASHQYIDKHN----IHKATLDAIYHAVENLQVIPRSALIDGRSIPED----LPCQAFA 135 + ID N +A A+ L P LIDG P +A A Sbjct: 77 GVVDVEEIDTLNILGATMRAMSLAVQGLAAKLGGDPDMVLIDGNLTPHGRCDLWQWEAQA 136 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 +I GD I +I+AASI+AK RDR+M A + YP+YG+ S+ GY TA+H + ++ GP+ Sbjct: 137 IIGGDGIEPAISAASIVAKEWRDRIMTEAAQDYPEYGWLSNKGYGTAQHLEALRLHGPTP 196 Query: 196 IHRLTFRPL 204 +HR +F P+ Sbjct: 197 LHRRSFAPV 205 >gi|159028469|emb|CAO87276.1| rnhB [Microcystis aeruginosa PCC 7806] Length = 207 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 81/193 (41%), Positives = 111/193 (57%), Gaps = 12/193 (6%) Query: 25 PVAGIDEVGRGALAGPVV--------VAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 +AG+DEVGRGAL GPVV P G+ DSK++S +KR++L ++I Sbjct: 6 LIAGVDEVGRGALFGPVVAAVVVTVPSGF----PQLWELGVKDSKQLSPQKRQKLSQQIQ 61 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 + I A+ + ID+ NI A+L A+ A+ L + P LIDG+ I +DL AV Sbjct: 62 RDFVCRIGYATVKEIDRLNILHASLLAMSRAIGKLPLSPSLCLIDGKHIIKDLSIPQKAV 121 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I+GD S IAAASI+AKV RD L+ H +YPDYG H GY TA+H + I G + Sbjct: 122 IQGDQQSPVIAAASIVAKVWRDDLIARWHGRYPDYGLPRHKGYGTAQHLEAIGNHGLTSQ 181 Query: 197 HRLTFRPLRNLSV 209 HRL+F P + + V Sbjct: 182 HRLSFSPCQQIRV 194 >gi|296270667|ref|YP_003653299.1| ribonuclease H [Thermobispora bispora DSM 43833] gi|296093454|gb|ADG89406.1| Ribonuclease H [Thermobispora bispora DSM 43833] Length = 253 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 10/201 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF---------GINDSKK 62 + +E +R +AG+DEVGRGA AGPVVV + D + P + DSK Sbjct: 28 YAIEEELRAAGAVRIAGLDEVGRGAWAGPVVVCVAVTDLSPPPELPGRGGRSVRLTDSKL 87 Query: 63 ISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 ++ RE E + I +S Q ID+ + +A A A+ L P + ++D Sbjct: 88 LTRASREAFAEVLPGWLNCHGIGESSPQEIDELGMTEALRLAAERALAALPYRPDAIILD 147 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G+ P A ++ D S+S+AAAS++AKV RDRLM +++P+YGF + GYP+ Sbjct: 148 GKHDFLRGPWTARCEVQADRRSVSVAAASVLAKVYRDRLMAALGEEHPEYGFADNAGYPS 207 Query: 182 AKHQQVIKEKGPSCIHRLTFR 202 H++ + E GP+ HRL++ Sbjct: 208 PVHRRALAEHGPTPHHRLSWS 228 >gi|168184647|ref|ZP_02619311.1| ribonuclease HII [Clostridium botulinum Bf] gi|237795877|ref|YP_002863429.1| ribonuclease HII [Clostridium botulinum Ba4 str. 657] gi|182672292|gb|EDT84253.1| ribonuclease HII [Clostridium botulinum Bf] gi|229260950|gb|ACQ51983.1| ribonuclease HII [Clostridium botulinum Ba4 str. 657] Length = 269 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 84/185 (45%), Positives = 116/185 (62%), Gaps = 6/185 (3%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS 77 N + +AG+DEVGRG LAGP+V AA++LD F I DSKK+S KKREEL I Sbjct: 81 NNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDIIIRE 140 Query: 78 SAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ +L + + Sbjct: 141 KAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK-NLNIRNEFI 199 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q IK+ GPS I Sbjct: 200 IKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNAGYGTEEHVQAIKKYGPSKI 259 Query: 197 HRLTF 201 HR++F Sbjct: 260 HRMSF 264 >gi|302865895|ref|YP_003834532.1| ribonuclease H [Micromonospora aurantiaca ATCC 27029] gi|302568754|gb|ADL44956.1| Ribonuclease H [Micromonospora aurantiaca ATCC 27029] Length = 291 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA IL + DSK ++ RE Sbjct: 16 YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAILPEGRRGEIDELADSKLLTPAARE 75 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +++++ + A+ A ++ + L Sbjct: 76 RVHDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTTRPEYVLTDGFGVDGL 135 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AV KGD ++ +AAAS++AKVTRDR+M ++P YGF H GY TA+H ++ Sbjct: 136 DVPGLAVWKGDRVAACVAAASVLAKVTRDRIMVELDGRFPGYGFAEHKGYITAEHSAALR 195 Query: 190 EKGPSCIHRLTFRPL 204 GP HR ++ + Sbjct: 196 ALGPCREHRFSYVNV 210 >gi|313754409|pdb|3O3F|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid Substrate And Magnesium Ions gi|313754415|pdb|3O3H|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid Substrate And Manganese Ions Length = 222 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 84/188 (44%), Positives = 113/188 (60%), Gaps = 4/188 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + +K VAG+DE GRG LAGPVV AA++L+ GINDSK++S KRE L ++I Sbjct: 4 ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLLDEIM 61 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A + I AS + ID +NI AT A+ A+ENL V P L++G+ +L + Sbjct: 62 EKAAVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVNGK--GIELSVPGTCL 119 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGD S I AASI+AKV RDRLM H+ YP + F H GY T +H I++ G I Sbjct: 120 VKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPI 179 Query: 197 HRLTFRPL 204 HRL+F P+ Sbjct: 180 HRLSFEPV 187 >gi|313754412|pdb|3O3G|A Chain A, T. Maritima Rnase H2 In Complex With Nucleic Acid Substrate And Calcium Ions Length = 222 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 85/188 (45%), Positives = 113/188 (60%), Gaps = 4/188 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + +K VAG+DE GRG LAGPVV AA++L+ GINDSK++S KRE L ++I Sbjct: 4 ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLLDEIM 61 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A + I AS + ID +NI AT A+ A+ENL V P L+DG+ +L + Sbjct: 62 EKAAVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVDGK--GIELSVPGTCL 119 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGD S I AASI+AKV RDRLM H+ YP + F H GY T +H I++ G I Sbjct: 120 VKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPI 179 Query: 197 HRLTFRPL 204 HRL+F P+ Sbjct: 180 HRLSFEPV 187 >gi|198283300|ref|YP_002219621.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665608|ref|YP_002425888.1| ribonuclease HII [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247821|gb|ACH83414.1| Ribonuclease H [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517821|gb|ACK78407.1| ribonuclease HII [Acidithiobacillus ferrooxidans ATCC 23270] Length = 196 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 73/179 (40%), Positives = 104/179 (58%), Gaps = 5/179 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 AG+DE GRG LAGPVV AA+IL G++DSKK++ R +I + A S++ Sbjct: 15 AGVDEAGRGPLAGPVVAAAVIL--RVPLHGLDDSKKMTAAARTHWAARIRNEALAWSVAR 72 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A+ I+++NI +A+L A+ A+ L PR L+DG P Q ++ GD + Sbjct: 73 AAVWEIERYNILQASLRAMARAIVGLPRQPRRILVDGNQSPPGW--QVETLVGGDGRVDA 130 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 IAAA I+AKVTRD M++ + YP YG H+GY TA H Q ++ GP +HR F P+ Sbjct: 131 IAAAGILAKVTRDEEMQLLDRYYPQYGLARHMGYGTAVHLQALRRWGPCALHRRGFGPV 189 >gi|319790514|ref|YP_004152147.1| Ribonuclease H [Thermovibrio ammonificans HB-1] gi|317115016|gb|ADU97506.1| Ribonuclease H [Thermovibrio ammonificans HB-1] Length = 242 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 78/195 (40%), Positives = 109/195 (55%), Gaps = 2/195 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 +E + K VAG+DE GRG LAGPVV AA++ P+ PF DSKK++ ++RE L+ Sbjct: 8 SIEKSLWSKGYRFVAGVDEAGRGPLAGPVVAAAVVFSPHVKPFLFRDSKKLTKRERERLF 67 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 +I SA + + A ID+ NI++ATL A A+E L + P LI Sbjct: 68 REILKSAYAVGVGFADSTEIDELNIYRATLLAAERAIEELPLKPDY-LITDYLKIPKFAG 126 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + A+ KGD S S A AS++AKV RD +M H +P+YGF+ H GYPT H ++ Sbjct: 127 RLIAIPKGDERSFSCACASVVAKVVRDFIMEELHTLFPNYGFNKHKGYPTKTHYGAVRSF 186 Query: 192 GPSCIHRLTFRPLRN 206 G S +HR +F L Sbjct: 187 GLSPVHRRSFGKLSQ 201 >gi|15643677|ref|NP_228723.1| ribonuclease HII [Thermotoga maritima MSB8] gi|7227928|sp|Q9X017|RNH2_THEMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|4981451|gb|AAD35996.1|AE001755_19 ribonuclease HII [Thermotoga maritima MSB8] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 85/188 (45%), Positives = 113/188 (60%), Gaps = 4/188 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + +K VAG+DE GRG LAGPVV AA++L+ GINDSK++S KRE L ++I Sbjct: 5 ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLLDEIM 62 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A + I AS + ID +NI AT A+ A+ENL V P L+DG+ +L + Sbjct: 63 EKAAVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVDGK--GIELSVPGTCL 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGD S I AASI+AKV RDRLM H+ YP + F H GY T +H I++ G I Sbjct: 121 VKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPI 180 Query: 197 HRLTFRPL 204 HRL+F P+ Sbjct: 181 HRLSFEPV 188 >gi|162149133|ref|YP_001603594.1| ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5] gi|189043600|sp|A9H3E2|RNH2_GLUDA RecName: Full=Ribonuclease HII; Short=RNase HII gi|161787710|emb|CAP57306.1| Ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5] Length = 224 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 80/205 (39%), Positives = 112/205 (54%), Gaps = 10/205 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHK 66 P + E VAG+DEVGRG LAGPVV AA++ D P + ++DSKK++ Sbjct: 2 PDYTREMQHG----GRVAGVDEVGRGPLAGPVVAAAVMFDSGVPRRLVTQLDDSKKLTEA 57 Query: 67 KREELYE--KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 R Y I++++AS I + NI +A A+ AV L P L+DG + Sbjct: 58 ARLRAYAALHAARGVHIAVAAASVSEIARLNILRAAFLAMRRAVARLPHQPDMVLVDGNA 117 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P D C A V+ GD SLSIAAASI+AKV RDRLM ++P YG++ + GY TA+H Sbjct: 118 AP-DFGCPAQCVVGGDGESLSIAAASIVAKVVRDRLMARLSCRWPGYGWERNAGYGTAEH 176 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209 + + G + HR F +R L++ Sbjct: 177 RAALCRAGTTPHHREAFGLVRQLTL 201 >gi|315502439|ref|YP_004081326.1| ribonuclease h [Micromonospora sp. L5] gi|315409058|gb|ADU07175.1| Ribonuclease H [Micromonospora sp. L5] Length = 291 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKRE 69 + LE ++ + VAG DE GRGA AGP+V AA IL + DSK ++ RE Sbjct: 16 YALERALQRRGFRHVAGADEAGRGACAGPLVAAAAILPEGRRGEIDELADSKLLTPAARE 75 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +++++ + A+ A ++ + L Sbjct: 76 RVHDEVVARALAYAVVVIPAEEVDARGLHVCNLAAMRRALASLTTRPEYVLTDGFGVDGL 135 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AV KGD ++ +AAAS++AKVTRDR+M ++P YGF H GY TA+H ++ Sbjct: 136 DVPGLAVWKGDRVAACVAAASVLAKVTRDRMMVELDGRFPGYGFAEHKGYITAEHSAALR 195 Query: 190 EKGPSCIHRLTFRPL 204 GP HR ++ + Sbjct: 196 ALGPCREHRFSYVNV 210 >gi|148380399|ref|YP_001254940.1| ribonuclease HII [Clostridium botulinum A str. ATCC 3502] gi|168180678|ref|ZP_02615342.1| ribonuclease HII [Clostridium botulinum NCTC 2916] gi|189043580|sp|A5I4L9|RNH2_CLOBH RecName: Full=Ribonuclease HII; Short=RNase HII gi|148289883|emb|CAL83991.1| putative ribonuclease HII [Clostridium botulinum A str. ATCC 3502] gi|182668376|gb|EDT80355.1| ribonuclease HII [Clostridium botulinum NCTC 2916] Length = 269 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 8/195 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 + + N + +AG+DEVGRG LAGP+V AA++LD F I DSKK+S KK Sbjct: 73 YNFDRRYG--NNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKK 130 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ Sbjct: 131 REELDIIIREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK 190 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +L + +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q Sbjct: 191 -NLNIRNEFIIKGDSKSISIASSSIIAKVYRDSMMKEYSKGLNMYGFNHNAGYGTEEHVQ 249 Query: 187 VIKEKGPSCIHRLTF 201 IK+ GPS IHR++F Sbjct: 250 AIKKHGPSKIHRMSF 264 >gi|221194830|ref|ZP_03567887.1| putative ribonuclease HII [Atopobium rimae ATCC 49626] gi|221185734|gb|EEE18124.1| putative ribonuclease HII [Atopobium rimae ATCC 49626] Length = 263 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 70/191 (36%), Positives = 105/191 (54%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + L+ + + + G+DEVGRG +AGP+ V A++L + G+NDSKK+S +RE + Sbjct: 66 YTLQRKLGGSGI--IVGVDEVGRGPVAGPLTVGAVVLSDTPLIDGLNDSKKLSAARRETI 123 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +I A I ++ ID+ + A A+ A+E V P LIDG + Sbjct: 124 AARIAKVALAIGMAFIEPAEIDEIGMSAALRKAMEIAIEQTGVDPDCVLIDGNPVHVHP- 182 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++KGD+ SIAAASI+AKV+RD LM +YP Y F + GY +A H + I + Sbjct: 183 -REKTIVKGDAKIASIAAASIVAKVSRDALMVDYDAQYPAYHFAQNKGYASADHIKAIAD 241 Query: 191 KGPSCIHRLTF 201 G + IHR TF Sbjct: 242 YGLTPIHRTTF 252 >gi|298707143|emb|CBJ29916.1| conserved unknown protein [Ectocarpus siliculosus] Length = 350 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 104/222 (46%), Gaps = 29/222 (13%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK-KREEL 71 E + V G+DE GRG AGPVV AA ++ P+ GI DSKKI+ RE L Sbjct: 119 TRENRKLAEGFDAVIGVDEAGRGPFAGPVVAAACMIPPDVNILGIQDSKKITQHSDRETL 178 Query: 72 YEKITSSAIISISSASH-----------------------QYIDKHNIHKATLDAIYHAV 108 ++++T + + +++ + K A Sbjct: 179 FKELTETPGVVWAASEVGSSRIDEINILEATKEAMTNCVLEVCSKSVEASANKSTNTKKK 238 Query: 109 ENLQVIPRSALIDGRSIPE---DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 +N L+DG P D +A V+ GD + IAAASIIAKVTRDRLM Sbjct: 239 KNTSDKKPFVLVDGNFTPPGLGDAKVEAECVVGGDGLEYCIAAASIIAKVTRDRLMIEFG 298 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 +++P +GF+ H GY TA H+ I+E G IHR +F L+N+ Sbjct: 299 ERWPVFGFERHKGYGTAAHRDAIREHGMVEIHRRSF--LKNM 338 >gi|209545123|ref|YP_002277352.1| ribonuclease HII [Gluconacetobacter diazotrophicus PAl 5] gi|209532800|gb|ACI52737.1| Ribonuclease H [Gluconacetobacter diazotrophicus PAl 5] Length = 224 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 80/205 (39%), Positives = 112/205 (54%), Gaps = 10/205 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISHK 66 P + E VAG+DEVGRG LAGPVV AA++ D P + ++DSKK++ Sbjct: 2 PDYTREMQHG----GRVAGVDEVGRGPLAGPVVAAAVMFDSGVPRRLATQLDDSKKLTEA 57 Query: 67 KREELYE--KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 R Y I++++AS I + NI +A A+ AV L P L+DG + Sbjct: 58 ARLRAYAALHAARGVHIAVAAASVSEIARLNILRAAFLAMRRAVARLPHQPDMVLVDGNA 117 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P D C A V+ GD SLSIAAASI+AKV RDRLM ++P YG++ + GY TA+H Sbjct: 118 AP-DFGCPAQCVVGGDGESLSIAAASIVAKVVRDRLMARLSCRWPGYGWERNAGYGTAEH 176 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLSV 209 + + G + HR F +R L++ Sbjct: 177 RAALCRAGTTPHHREAFGLVRQLTL 201 >gi|325846098|ref|ZP_08169192.1| ribonuclease HII [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481691|gb|EGC84726.1| ribonuclease HII [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 210 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 85/190 (44%), Positives = 116/190 (61%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E++ + EK +AGIDEVGRG LAGPVV A+I+ ++ GI DSKK+S KK +ELY Sbjct: 12 EIKNEIHEK-YDLIAGIDEVGRGPLAGPVVACAVIMKKDSHIEGITDSKKLSKKKMKELY 70 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 KI +I S A++ IDK NI +AT A+ A+E L+ P+ LID I D Sbjct: 71 GKIIDDSISYSFGYANNILIDKINIKEATKLAMKDALEGLEKTPQIVLIDAERIDTD--I 128 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD +I+ ASI+AKV RD++M K YP Y F+++ GY T KH Q I++ Sbjct: 129 KQLNIVKGDLYEYAISCASILAKVRRDKIMENFSKIYPYYSFETNAGYGTKKHYQGIEKY 188 Query: 192 GPSCIHRLTF 201 G IHR TF Sbjct: 189 GECPIHRRTF 198 >gi|312139224|ref|YP_004006560.1| ribonuclease hii rnhb [Rhodococcus equi 103S] gi|311888563|emb|CBH47875.1| ribonuclease HII RnhB [Rhodococcus equi 103S] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 76/195 (38%), Positives = 110/195 (56%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREE 70 +E+ + + PVAG+DE GRGA AGP+VVAA +L P+ ++DSKK++ K R+E Sbjct: 18 TMESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLGSKPHAALARLDDSKKLTEKVRDE 77 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A S+ +D+ +H A ++ + AV L V P L DG +P L Sbjct: 78 LFPVIKRLALAWSVVEIPAAEVDRIGVHVANIEGMRRAVAGLTVAPGYVLTDGFRVP-GL 136 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + VI GD+ + IAAAS++AKV+RDR M + P YGF H GY TA H + Sbjct: 137 PAPSLPVIGGDASAACIAAASVLAKVSRDRTMVALDDELPGYGFAGHKGYSTAVHTAALN 196 Query: 190 EKGPSCIHRLTFRPL 204 E GP HR+++ + Sbjct: 197 ELGPCREHRMSYANV 211 >gi|331698498|ref|YP_004334737.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190] gi|326953187|gb|AEA26884.1| Ribonuclease H [Pseudonocardia dioxanivorans CB1190] Length = 265 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 93/196 (47%), Gaps = 2/196 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68 ++ L++ + + PVAG+DE GRGA AGP+VVAA +L P + G+ DSK ++ R Sbjct: 35 NWTLQSTLHRHGLGPVAGVDEAGRGACAGPLVVAACVLRPGDAQRLAGLTDSKLLTAAAR 94 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EE +E +T A+ A ++ Sbjct: 95 EEYFELLTRRAVDLSVVVIPPREIDRRGVHAANIEGMRRAVAGLAQRPGYVLTDGFPVRG 154 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 A AV KGD ++ +AAAS++AKVTRDR+M ++ P YGF H GY T H + Sbjct: 155 FGAPALAVPKGDLVAACVAAASVLAKVTRDRIMVELDERLPQYGFAVHKGYCTPVHDAAL 214 Query: 189 KEKGPSCIHRLTFRPL 204 GPS HR +F + Sbjct: 215 AAHGPSAEHRYSFVNV 230 >gi|324998958|ref|ZP_08120070.1| ribonuclease HII [Pseudonocardia sp. P1] Length = 234 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 67/188 (35%), Positives = 101/188 (53%), Gaps = 3/188 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITS 77 + PVAG+DE GRGA AGP+VVAA +L P + G+ DSK ++ RE Y +I Sbjct: 1 RHGLGPVAGVDEAGRGASAGPLVVAACVLRPADAAALDGLTDSKLLTASAREHWYGRIRK 60 Query: 78 SA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A +++ +D+ +H A ++ + AV L +P ++ A AV Sbjct: 61 RALDLAVVVIPPAEVDRRGVHIANIEGMRRAVAALTTVPPGYVLTDGFAVRGFGRPALAV 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 KGD ++ IAAAS++AKVTRDR+M ++ YGF H GY T +H+ ++ GP Sbjct: 121 PKGDRVAACIAAASVLAKVTRDRIMTELDAEHAAYGFAVHKGYNTPEHEGALRAHGPCPE 180 Query: 197 HRLTFRPL 204 HR +F + Sbjct: 181 HRFSFANV 188 >gi|325673470|ref|ZP_08153161.1| ribonuclease HII [Rhodococcus equi ATCC 33707] gi|325555491|gb|EGD25162.1| ribonuclease HII [Rhodococcus equi ATCC 33707] Length = 212 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 111/194 (57%), Gaps = 4/194 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKREEL 71 +E+ + + PVAG+DE GRGA AGP+VVAA +L P+ ++DSKK++ K R+EL Sbjct: 1 MESALVRSGLGPVAGVDEAGRGACAGPLVVAACVLGSKPHAALARLDDSKKLTEKVRDEL 60 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A+ S+ +D+ +H A ++ + AV L V P L DG +P LP Sbjct: 61 FPVIKRLAVAWSVVEIPAAEVDRIGVHVANIEGMRRAVAGLTVAPGYVLTDGFRVP-GLP 119 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + VI GD+ + IAAAS++AKV+RDR M + P YGF H GY TA H + E Sbjct: 120 APSLPVIGGDASAACIAAASVLAKVSRDRTMVALDDELPGYGFAGHKGYSTAVHTAALNE 179 Query: 191 KGPSCIHRLTFRPL 204 GP HR+++ + Sbjct: 180 LGPCREHRMSYANV 193 >gi|149185908|ref|ZP_01864223.1| Ribonuclease H [Erythrobacter sp. SD-21] gi|148830469|gb|EDL48905.1| Ribonuclease H [Erythrobacter sp. SD-21] Length = 211 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 9/192 (4%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI 80 ++ + G+DE GRG LAGPVV AA++L P G++DSKK+S KR +L +I Sbjct: 11 RDAPLIVGVDEAGRGPLAGPVVAAAVVLCK-PCPGGLDDSKKLSAAKRSKLEPQIQRRCA 69 Query: 81 ISISSASHQYIDKHNIHKATLDAI----YHAVENLQVIPRSALIDGRSIPED----LPCQ 132 ++ + ID+ NI AT+ A+ +E L P LIDG P Sbjct: 70 WGLAVVEPEVIDRLNIFGATMLAMTLATQRCIEALGAEPAEVLIDGNMTPHGRREEWRWP 129 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A A++ GD I+AASI+AK RDR+M A K +P YG++++ GY + H + ++ G Sbjct: 130 ARAIVGGDGKEACISAASILAKEYRDRIMVEAAKAHPHYGWENNKGYGSKSHMEALRLHG 189 Query: 193 PSCIHRLTFRPL 204 P+ +HR +F P+ Sbjct: 190 PTPLHRRSFAPV 201 >gi|288922428|ref|ZP_06416616.1| Ribonuclease H [Frankia sp. EUN1f] gi|288346231|gb|EFC80572.1| Ribonuclease H [Frankia sp. EUN1f] Length = 240 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 78/196 (39%), Positives = 109/196 (55%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 F E + + PVAG+DE GRGA AGP+VVAA+IL P +NDSK ++ + RE Sbjct: 15 FGYERALTRCGLGPVAGVDEAGRGACAGPLVVAAVILRPGRTRRLARLNDSKLLTERVRE 74 Query: 70 E-LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E + S+A ++ ID+ +H A + + AV L V P L DG ++ Sbjct: 75 EVYADVQASAAAVATVVVPAADIDRIGVHVANIMGMRRAVARLGVSPGYVLTDGFAVE-G 133 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 ++ AVIKGD IAAAS++AKVTRDR+MR H++Y +Y F H GY TA H + Sbjct: 134 FGVESLAVIKGDRAVGCIAAASVVAKVTRDRIMRCLHEQYAEYDFAQHKGYVTAAHTAAL 193 Query: 189 KEKGPSCIHRLTFRPL 204 GP HRL++ + Sbjct: 194 ARYGPCAEHRLSYVNV 209 >gi|116750425|ref|YP_847112.1| ribonuclease HII [Syntrophobacter fumaroxidans MPOB] gi|116750467|ref|YP_847154.1| ribonuclease HII [Syntrophobacter fumaroxidans MPOB] gi|189043668|sp|A0LMM5|RNH2_SYNFM RecName: Full=Ribonuclease HII; Short=RNase HII gi|116699489|gb|ABK18677.1| Ribonuclease H [Syntrophobacter fumaroxidans MPOB] gi|116699531|gb|ABK18719.1| RNase HII [Syntrophobacter fumaroxidans MPOB] Length = 233 Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 108/195 (55%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + VAGIDEVGRG LAGPVV AA+++ G+ DSKK+S +RE Sbjct: 14 LHFEKQAYRQGFQLVAGIDEVGRGPLAGPVVAAAVVVPAGVRLPGVADSKKLSAGQRESC 73 Query: 72 YEKI-TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E I + + I ID+ NI +AT A+ AV L+ P LIDG Sbjct: 74 CEDILSCGCDVGIGRVEPSEIDRVNILQATFQAMIAAVAGLKTPPHCLLIDGPYELPLF- 132 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +GD+ SLSIAAASI+AKV RDRLM H KYP YGFD + GY TA+H ++ Sbjct: 133 IAQKGIPQGDAKSLSIAAASIVAKVHRDRLMCEYHLKYPVYGFDRNKGYGTARHLDALRR 192 Query: 191 KGPSCIHRLTFRPLR 205 GP IHRL+F +R Sbjct: 193 YGPCPIHRLSFGGVR 207 >gi|229496858|ref|ZP_04390566.1| ribonuclease HII [Porphyromonas endodontalis ATCC 35406] gi|229316176|gb|EEN82101.1| ribonuclease HII [Porphyromonas endodontalis ATCC 35406] Length = 198 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 75/184 (40%), Positives = 106/184 (57%), Gaps = 4/184 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRG+L G V AA+IL + +NDSKK++ + R L +I A+ ++ Sbjct: 14 CGCDEAGRGSLVGDVFAAAVILPEDFCLPELNDSKKLTERTRYRLRPQIEEQAVAWAVGR 73 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 AS + ID +NI A+ A++ A+ L + P+ LIDG L ++KGDS S Sbjct: 74 ASAEEIDTYNILHASFLAMHRAIAALGITPQRLLIDGNHFDPYLDIPHECIVKGDSRLAS 133 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF---R 202 IAAASI+AK RD M AHK++P YG+D + GYPT H+Q I++ G S + R TF + Sbjct: 134 IAAASILAKTYRDDYMLAAHKRFPVYGWDRNKGYPTPAHRQAIEKMGHSPLQRFTFMETK 193 Query: 203 PLRN 206 P R Sbjct: 194 PSRK 197 >gi|19553236|ref|NP_601238.1| ribonuclease HII [Corynebacterium glutamicum ATCC 13032] gi|62390872|ref|YP_226274.1| ribonuclease HII [Corynebacterium glutamicum ATCC 13032] gi|41326211|emb|CAF20373.1| PROBABLE RIBONUCLEASE HII PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 222 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 69/197 (35%), Positives = 94/197 (47%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREE 70 E + + PVAG+DE GRGA GP+ +AA IL P + DSKK+S RE+ Sbjct: 9 TFEVTLSRNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKKLSASTREK 68 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I A S+ S Q ID+ I A + + AV L P L D +P Sbjct: 69 LMPLIKKHALAWSVIVISAQDIDRFGIQHANISGMRRAVAALGTQPGYVLTDAMKVP-GF 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +I GD+ + IAAAS++AK TRD +M YP YG + H GY T H ++ Sbjct: 128 TVPYLPIIGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVR 187 Query: 190 EKGPSCIHRLTFRPLRN 206 G S HR ++ + Sbjct: 188 HHGASPEHRYSYANVAK 204 >gi|307325020|ref|ZP_07604224.1| Ribonuclease H [Streptomyces violaceusniger Tu 4113] gi|306889166|gb|EFN20148.1| Ribonuclease H [Streptomyces violaceusniger Tu 4113] Length = 233 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 72/197 (36%), Positives = 106/197 (53%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R V GIDEVGRGA AGPV V A + P G+ DSK +S K Sbjct: 4 EPPTHSVERSLRATTGAKIVVGIDEVGRGAWAGPVTVCAAVTGLRRPPTGLTDSKLLSPK 63 Query: 67 KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR L +++ S + +S + ID + A A A++ L V P + ++DG+ Sbjct: 64 KRTTLAQELHSWVTAHALGHSSPEEIDGLGMTAALRLAATRALDALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P VIKGD +S+AAAS+IAKV RD +M ++ D+ F+ + GYP+ H+ Sbjct: 124 YLGTPWAVRTVIKGDQSCVSVAAASVIAKVRRDAMMAELGAEHMDFCFEDNAGYPSPVHR 183 Query: 186 QVIKEKGPSCIHRLTFR 202 ++E GP+ HRL++ Sbjct: 184 AALRELGPTPHHRLSWA 200 >gi|153951148|ref|YP_001397283.1| ribonuclease HII [Campylobacter jejuni subsp. doylei 269.97] gi|166225179|sp|A7H1A3|RNH2_CAMJD RecName: Full=Ribonuclease HII; Short=RNase HII gi|152938594|gb|ABS43335.1| ribonuclease HII [Campylobacter jejuni subsp. doylei 269.97] Length = 191 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 5/187 (2%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 + + + GIDE GRGALAGP+++AA L+ G+ DSKK+S KKREELYE I Sbjct: 8 KELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKK--LDGLCDSKKLSEKKREELYEII 65 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 ++ I + S + ID + + ++ + ++ + Sbjct: 66 IKNSNYLILAFSSEQIDTLGLSTCLKTGLKLIKKHFKAENNFLYDGNTNLGING---IKT 122 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 IK D+ L ++AASI+AKV++D++M K +P Y F+ + Y T H++VI + G Sbjct: 123 QIKADTSILQVSAASILAKVSKDKVMNFLAKDFPCYEFEKNKAYGTKAHKEVIAKFGICK 182 Query: 196 IHRLTFR 202 +HR +F+ Sbjct: 183 LHRKSFK 189 >gi|296116694|ref|ZP_06835304.1| ribonuclease HII [Gluconacetobacter hansenii ATCC 23769] gi|295976906|gb|EFG83674.1| ribonuclease HII [Gluconacetobacter hansenii ATCC 23769] Length = 235 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 80/204 (39%), Positives = 115/204 (56%), Gaps = 10/204 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHK 66 P + E VAG+DEVGRG LAGPVV AA++ P+++ ++DSKK+ Sbjct: 2 PDYTREKAHG----GRVAGVDEVGRGPLAGPVVAAAVMFMHGVPDDLASRLDDSKKLRPA 57 Query: 67 KREELYEKIT--SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 R + ++ S +I +++AS I++HNI +A A+ AV L P L+DG + Sbjct: 58 ARLRAFAELRALPSVLIGVAAASVTEIERHNILRAAHIAMQRAVARLPQRPDLVLVDGNA 117 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P D C V+ GDS SLSIAAASI+AKV RDRLM ++P YG++ + GY TA H Sbjct: 118 TP-DFGCATQCVVGGDSKSLSIAAASIVAKVIRDRLMERLSVRWPGYGWERNAGYGTAAH 176 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208 + + G + HR F +R L+ Sbjct: 177 RAALCAVGITPHHRAAFGTVRALA 200 >gi|209966435|ref|YP_002299350.1| ribonucleasehII [Rhodospirillum centenum SW] gi|209959901|gb|ACJ00538.1| ribonucleasehII [Rhodospirillum centenum SW] Length = 218 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 75/208 (36%), Positives = 107/208 (51%), Gaps = 22/208 (10%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALA------------GPVVVAAIILDPNNIPFGI 57 P LE V G+DE GRG LA GP+ + GI Sbjct: 6 PDLTLEHRHGHAAGRIVCGVDEAGRGPLAGPVVAAAVVLPGGPL---------PDWCAGI 56 Query: 58 NDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI-PR 116 +DSK++S +RE L I + A + + A ID NI +AT A+ AVE L P Sbjct: 57 DDSKRLSAARREALCGLIRAQARVGVGIADVAEIDTLNILRATFLAMRRAVEGLGAPLPA 116 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 AL+DG P A++ GD++ LSIAAASI+AKVTRDR+M +++P YG++ + Sbjct: 117 VALVDGNQRPPLPCAIVEAIVDGDALCLSIAAASIVAKVTRDRIMAELAERHPGYGWERN 176 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 GY TA H++ ++ G + HR +F P+ Sbjct: 177 AGYGTAAHREALRRLGATPEHRRSFAPV 204 >gi|124026648|ref|YP_001015763.1| ribonuclease HII and HIII [Prochlorococcus marinus str. NATL1A] gi|166226636|sp|A2C4T9|RNH2_PROM1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|123961716|gb|ABM76499.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. NATL1A] Length = 195 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 7/191 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 +AG+DEVG+G L GPV AA+IL N G+ DSKK+SH++R L I +++ Sbjct: 6 SLIAGVDEVGKGCLFGPVFAAAVILSKENEIELLNQGLKDSKKLSHRQRHNLVPLIKTNS 65 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I +I AS + ID I AT A+ A+E P L+DG P + ++ Sbjct: 66 IAWTIGQASAREIDVIGIRDATEKAMLRALEKFSSPPDLILVDGILPIRLWPGKQKTQVR 125 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 G+S SIAAAS++AK TRD L++ +KY YG + + GY T H+ + ++G + +HR Sbjct: 126 GESHFASIAAASVLAKETRDELIKRLARKYNCYGLEKNKGYGTEIHRTNLIKEGATKLHR 185 Query: 199 LTFRPLRNLSV 209 +F + L + Sbjct: 186 KSF--ISRLEI 194 >gi|72382906|ref|YP_292261.1| ribonuclease HII [Prochlorococcus marinus str. NATL2A] gi|97189164|sp|Q46IX0|RNH2_PROMT RecName: Full=Ribonuclease HII; Short=RNase HII gi|72002756|gb|AAZ58558.1| RNase HII [Prochlorococcus marinus str. NATL2A] Length = 195 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 68/183 (37%), Positives = 102/183 (55%), Gaps = 5/183 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 +AG+DEVG+G L GPV AA+IL N G+ DSKK+S ++R L I +++ Sbjct: 6 SLIAGVDEVGKGCLFGPVFAAAVILSKKNEIELLNQGLKDSKKLSQRQRHNLVPLIKTNS 65 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I +I AS + ID I AT A+ A+E P L+DG P + ++ Sbjct: 66 IAWTIGQASAREIDVMGIRDATEKAMLRALEKFSSPPDLILVDGILPIRLWPGKQKTQVR 125 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 G+S SIAAAS++AK TRD L++ +KY YG + + GY T H+ + ++G + +HR Sbjct: 126 GESHFASIAAASVLAKETRDELIKRLARKYNCYGLEKNKGYGTEIHRTKLIKEGATKLHR 185 Query: 199 LTF 201 +F Sbjct: 186 KSF 188 >gi|78776481|ref|YP_392796.1| ribonuclease HII [Sulfurimonas denitrificans DSM 1251] gi|78497021|gb|ABB43561.1| RNase HII [Sulfurimonas denitrificans DSM 1251] Length = 188 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 71/182 (39%), Positives = 98/182 (53%), Gaps = 7/182 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 GIDE GRG +AG +VVA IL N+ G+NDSKK++ KKRE LYE I ++ I Sbjct: 6 CGIDEAGRGPIAGDLVVAGCIL--NSHVDGLNDSKKLNEKKREALYEIIIKNSSYHIVKF 63 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 S + ID + I A+ + + L DG + +IK D + Sbjct: 64 SAKEIDDNGISICMKKALLEI--MKNLTCKEYLFDGNTNFGINNLP--TMIKADGKIPEV 119 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 +AASI+AKVT DR + KKYP Y F H GY TA H ++IK+ G IHR +++ L+ Sbjct: 120 SAASILAKVTHDRNIINDAKKYPQYQFQKHKGYGTALHVEMIKKYGYCEIHRKSYK-LKA 178 Query: 207 LS 208 L+ Sbjct: 179 LN 180 >gi|77919812|ref|YP_357627.1| ribonuclease HII [Pelobacter carbinolicus DSM 2380] gi|97189130|sp|Q3A2F0|RNH2_PELCD RecName: Full=Ribonuclease HII; Short=RNase HII gi|77545895|gb|ABA89457.1| RNase HII [Pelobacter carbinolicus DSM 2380] Length = 209 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 85/195 (43%), Positives = 113/195 (57%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AGIDE GRG LAGPVV AA++L P G+NDSKKIS K RE+L Sbjct: 13 LYFEQRLSRQGYRRIAGIDEAGRGPLAGPVVAAAVVLPPVFDLPGLNDSKKISAKLREKL 72 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + +I A I AS Q +D N+ +ATL A+ A++ L L+DG + Sbjct: 73 FPQIRRQALDYGIGLASAQEVDGLNVLQATLLAMRRALDRLAQPADYLLVDGITPVPLP- 131 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + +GDS SLSIAAAS++AKV RDRLM ++P+YGF H GY +A H+ I Sbjct: 132 LPQKTLKQGDSRSLSIAAASVLAKVVRDRLMTTYDARFPEYGFAGHKGYGSAAHRAAIAR 191 Query: 191 KGPSCIHRLTFRPLR 205 GP +HR TFR +R Sbjct: 192 LGPCPLHRATFRGVR 206 >gi|254465727|ref|ZP_05079138.1| ribonuclease HII [Rhodobacterales bacterium Y4I] gi|206686635|gb|EDZ47117.1| ribonuclease HII [Rhodobacterales bacterium Y4I] Length = 180 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 115/176 (65%) Query: 33 GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYID 92 GRG LAGPV AA++LD IP G+NDSKK+S KKRE L I S A +I+ A+ + ID Sbjct: 2 GRGPLAGPVTAAAVVLDAAAIPDGLNDSKKLSLKKREALEGAILSCAQTAIAHATVEEID 61 Query: 93 KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152 NI +A+ A+ AV L P LIDG IP+ L AV+KGD+ SLSIAAASII Sbjct: 62 SLNILRASHLAMERAVAALDPAPDYLLIDGNLIPKGLLLPCEAVVKGDAKSLSIAAASII 121 Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 AK+ RDR+M +++P YG++ + GYP+ +H++ + + G + HR +F+P+ N+ Sbjct: 122 AKLARDRIMVDLAQQFPGYGWEKNAGYPSKQHREALVQLGVTPHHRRSFKPVHNIL 177 >gi|153831009|ref|ZP_01983676.1| ribonuclease HII [Vibrio cholerae 623-39] gi|148873517|gb|EDL71652.1| ribonuclease HII [Vibrio cholerae 623-39] Length = 180 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 84/181 (46%), Positives = 108/181 (59%), Gaps = 2/181 (1%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 + ++P EL +AG+DEVGRG L G VV AA+ILDPN G+NDSKK+S Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSE 60 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKR L+ +I A ++ S Q ID+ NI +AT+ A+ AV L++ P LIDG Sbjct: 61 KKRLALFPEIQEKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 IP+ A AV+KGD I+AASIIAKV RD+ M K+YP +GF H GYPTA H Sbjct: 121 IPKLPMA-AQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAH 179 Query: 185 Q 185 Sbjct: 180 L 180 >gi|304319995|ref|YP_003853638.1| ribonuclease HII [Parvularcula bermudensis HTCC2503] gi|303298898|gb|ADM08497.1| ribonuclease HII [Parvularcula bermudensis HTCC2503] Length = 209 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 108/198 (54%), Gaps = 3/198 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREEL 71 + E ++ P+ GIDE GRGA AGPVV AA+I D P + DSK + +RE L Sbjct: 6 DTELAFADEIGGPICGIDEAGRGAWAGPVVAAAVICGDVKAYPEDLADSKTLREARREHL 65 Query: 72 YEKI--TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 ++ + + + AS ID+ + KA A+ AV+ L P AL+DG P Sbjct: 66 FDLLSARQDLRVGVGVASVAEIDRMGVGKANWLAMARAVKALPSPPLGALVDGNYAPALP 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++KGD L IAAASI+AKVTRDR+MR ++P Y + ++ GYP H+ ++ Sbjct: 126 CPDIRPIVKGDGSCLVIAAASIVAKVTRDRIMRSLCPEHPAYRWSANKGYPAPVHRAALE 185 Query: 190 EKGPSCIHRLTFRPLRNL 207 E GPS HR +F P+ L Sbjct: 186 EIGPSAHHRHSFAPIAAL 203 >gi|16329251|ref|NP_439979.1| ribonuclease HII [Synechocystis sp. PCC 6803] gi|7227925|sp|P72657|RNH2_SYNY3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|1651731|dbj|BAA16659.1| ribonuclease HII [Synechocystis sp. PCC 6803] Length = 190 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 74/186 (39%), Positives = 108/186 (58%), Gaps = 7/186 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI-I 81 AG+DEVGRGAL GPVV AA+++ I G+ DSK++S + R +L + + Sbjct: 2 AGVDEVGRGALFGPVVAAAVLVPIEAINQLQALGVKDSKQLSPQHRSQLAQALPDYVHSY 61 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 IS A I++ NI +A+L A+ AV+ L V+P L+DGR + AV GD Sbjct: 62 GISFADVPTINRVNIRQASLLAMERAVQKLPVMPAWVLVDGRDTLPHIAMAQMAVTGGDR 121 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SL I+AASI+AKV RD L+ +++P Y S+ GY TAKH+Q +++ G + +HR F Sbjct: 122 KSLLISAASILAKVWRDTLITRLAERFPGYDLASNKGYGTAKHRQGLRQYGATPLHRPLF 181 Query: 202 RPLRNL 207 R + Sbjct: 182 --CRKI 185 >gi|212695498|ref|ZP_03303626.1| hypothetical protein ANHYDRO_00014 [Anaerococcus hydrogenalis DSM 7454] gi|212677498|gb|EEB37105.1| hypothetical protein ANHYDRO_00014 [Anaerococcus hydrogenalis DSM 7454] Length = 210 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 82/190 (43%), Positives = 116/190 (61%), Gaps = 4/190 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E++ + E+ +AGIDEVGRG LAGPVV A+++ ++ G+ DSKK+S KK +ELY Sbjct: 12 EIKNEIHER-YDLIAGIDEVGRGPLAGPVVACAVVMKKDSHIEGVTDSKKLSKKKMKELY 70 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 KI +I S A++ IDK NI +AT A+ A+E L+ P+ LID I D Sbjct: 71 GKIIDDSISYSFGYANNVLIDKINIKEATKLAMKDALERLEKTPQIVLIDAERIDTD--I 128 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + ++KGD +I+ ASI+AKV RD++M K YP Y F+++ GY T KH Q I++ Sbjct: 129 KQLNIVKGDLYEYAISCASILAKVRRDKIMENFSKIYPYYSFETNAGYGTKKHYQGIEKY 188 Query: 192 GPSCIHRLTF 201 G IHR TF Sbjct: 189 GECPIHRKTF 198 >gi|85707870|ref|ZP_01038936.1| ribonuclease HII [Erythrobacter sp. NAP1] gi|85689404|gb|EAQ29407.1| ribonuclease HII [Erythrobacter sp. NAP1] Length = 206 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 9/194 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE GRG LAGPVV AA++L +P GI DSKK+S K+R L E++ + ++ Sbjct: 13 SIIIGVDEAGRGPLAGPVVAAAVVLGEG-LPAGIGDSKKLSAKRRAALDEELRACCKWAV 71 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVEN--------LQVIPRSALIDGRSIPEDLPCQAFA 135 + ID+ NI +AT++A+ V + ++ + A A Sbjct: 72 AVVEADEIDRLNIFQATMEAMTRCVRDLAAQLPGSPDIVLIDGNQTPERRCAEWRWPARA 131 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++ GD I SI AASIIAK RDR+M A + +P YG++ + GY T +H + ++ GP+ Sbjct: 132 IVGGDGIEPSIGAASIIAKEWRDRMMIAAARAHPAYGWERNKGYGTKEHMEALRLHGPTS 191 Query: 196 IHRLTFRPLRNLSV 209 +HR +F P+ S+ Sbjct: 192 LHRQSFAPVAQASL 205 >gi|255325247|ref|ZP_05366353.1| ribonuclease HII [Corynebacterium tuberculostearicum SK141] gi|255297812|gb|EET77123.1| ribonuclease HII [Corynebacterium tuberculostearicum SK141] Length = 213 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 67/197 (34%), Positives = 98/197 (49%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 E + + + PVAG DE GRGA GP+ +AA ++ I + DSKK++ K+RE+ Sbjct: 9 TYEVALSKAGLGPVAGADEAGRGACCGPITIAACVMPDRPIKELAALTDSKKLTPKQREK 68 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L+ I A S+ IDK I A + + AV L+ P ++ L Sbjct: 69 LFPLIKDKAVDWSVVHIGAGDIDKRGIQHANISGMRRAVARLETRPGY-VLTDALFIPGL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +I GD+ + IAAAS++AKV+RD LM +YP YG SH GY T H+ I Sbjct: 128 TQPHLPIIGGDAAARCIAAASVLAKVSRDHLMHELDARYPGYGLASHKGYGTKAHEAAIA 187 Query: 190 EKGPSCIHRLTFRPLRN 206 G HR+++ +R Sbjct: 188 ALGACPEHRMSYENVRR 204 >gi|85714250|ref|ZP_01045238.1| ribonuclease HII/HIII [Nitrobacter sp. Nb-311A] gi|85698697|gb|EAQ36566.1| ribonuclease HII/HIII [Nitrobacter sp. Nb-311A] Length = 215 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 89/185 (48%), Positives = 120/185 (64%), Gaps = 1/185 (0%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 + +WPVAG DE GRG LAGPVV AA++LDPN IP GI+DSK+++ +REEL+E+IT++A Sbjct: 2 RRGVWPVAGCDEAGRGPLAGPVVAAAVVLDPNRIPEGIDDSKRLTAARREELFEEITATA 61 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +I+ A ID+ NI +A+L A+ AV L +DGR ++ C+ VI G Sbjct: 62 SFAIAVAPIARIDRDNILRASLWALARAVHALPDAAEHVFVDGRD-RIEVACECEPVIGG 120 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D + LSIAAASI+AKVTRDRLM P YGF++H GY +H + + GPS HR Sbjct: 121 DGLVLSIAAASIVAKVTRDRLMCRLALDCPGYGFETHKGYAVPEHLEALGRLGPSPHHRS 180 Query: 200 TFRPL 204 F P+ Sbjct: 181 FFAPV 185 >gi|78189946|ref|YP_380284.1| ribonuclease HII [Chlorobium chlorochromatii CaD3] gi|97182370|sp|Q3AP34|RNH2_CHLCH RecName: Full=Ribonuclease HII; Short=RNase HII gi|78172145|gb|ABB29241.1| RNase HII [Chlorobium chlorochromatii CaD3] Length = 206 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 115/195 (58%), Gaps = 7/195 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKR 68 E + ++ + GIDEVGRG LAGPVV AA++ P +NDSKK+S K+R Sbjct: 5 YEEPLW-QHYEFICGIDEVGRGPLAGPVVAAAVVFPRWFQPTEALLTLLNDSKKLSAKER 63 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L I + A +++ H ID+ NI +AT+ A+ +AV+ L +IP L+DG Sbjct: 64 ESLVPAIKAQALHWALAEVQHNVIDEVNILQATMLAMNNAVKALPIIPSLLLVDGNRFTT 123 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 DL ++KGDS SIAAAS++AKV RD LM + YP YGF+ H GYPT+ H + Sbjct: 124 DLAIPYKTIVKGDSHVFSIAAASVLAKVHRDALMCVYATHYPHYGFERHAGYPTSAHIEA 183 Query: 188 IKEKGPSCIHRLTFR 202 I++ G IHR +F+ Sbjct: 184 IRQHGRCPIHRQSFK 198 >gi|26554469|ref|NP_758403.1| ribonuclease HII [Mycoplasma penetrans HF-2] gi|26454479|dbj|BAC44807.1| ribonuclease HII [Mycoplasma penetrans HF-2] Length = 218 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 107/197 (54%), Gaps = 5/197 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK-REE 70 F+ + +REK + G+DEVGRG +AGP+VV +IL+PN I DSK I + R+E Sbjct: 17 FDFDNSLREK-YKNIIGLDEVGRGCIAGPLVVVGVILNPNFFDDRIKDSKLIKSIELRKE 75 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I ++I I + +D+ +A++ + + N + + +DL Sbjct: 76 LKNLILKNSISYQIEVVNSNIVDQLGPKQASVKGM-TKIANGLINDYDLCLTDFEKIKDL 134 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++KGD+ S +IA ASIIAK TRD M KYP+Y F +H GY T KH Q+I Sbjct: 135 EKPQMNLVKGDNTSFTIACASIIAKSTRDDYMEELDNKYPNYLFKNHQGYLTKKHLQLIH 194 Query: 190 EKGPSCI-HRLTFRPLR 205 + GP HR +++P++ Sbjct: 195 QYGPIKEVHRFSYKPIK 211 >gi|88706742|ref|ZP_01104444.1| Ribonuclease HII [Congregibacter litoralis KT71] gi|88699063|gb|EAQ96180.1| Ribonuclease HII [Congregibacter litoralis KT71] Length = 204 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 85/181 (46%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 + G+DEVGRG LAG VV AA +LDP N G+ DSKK++ K+RE L E++ + A I++ Sbjct: 19 IVGVDEVGRGPLAGDVVAAAAVLDPANPIVGLTDSKKLTAKRREVLREELLTRARGIALG 78 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 AS ID NI +A+L A++ AV+ L + P L+DGR + AV+KGD+ Sbjct: 79 RASPVEIDTLNILQASLLAMWRAVDALGLEPDLVLVDGR-QLPSWDYASIAVVKGDARVP 137 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV RD+ M H +P YGFD H GYPTA H +K G S +HR +F P+ Sbjct: 138 AIAAASIVAKVARDQYMCEQHALWPHYGFDRHKGYPTAAHMAALKTYGVSPLHRRSFAPV 197 Query: 205 R 205 R Sbjct: 198 R 198 >gi|326559868|gb|EGE10268.1| ribonuclease HII [Moraxella catarrhalis 7169] gi|326570127|gb|EGE20172.1| ribonuclease HII [Moraxella catarrhalis BC8] gi|326570865|gb|EGE20889.1| ribonuclease HII [Moraxella catarrhalis BC7] gi|326576404|gb|EGE26313.1| ribonuclease HII [Moraxella catarrhalis O35E] Length = 248 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 79/210 (37%), Positives = 108/210 (51%), Gaps = 25/210 (11%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFGINDSKKISHKKREE 70 P+ GIDEVGRGAL G + V A+IL N +NDSKK+S K+RE+ Sbjct: 26 HAPIVGIDEVGRGALFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQ 85 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++ IT A +I ID+ NI++AT+ + A+E + + + + + Sbjct: 86 LFDIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGN 145 Query: 130 PCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 +A+IKGD+ SIA ASI+AKV RDRLM K YP+Y D H Sbjct: 146 QLPSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPEYLLDKHK 205 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GY TAKH+ I E G HR +F P+R L Sbjct: 206 GYLTAKHKAAILEYGILPEHRRSFSPIREL 235 >gi|296113384|ref|YP_003627322.1| ribonuclease HII [Moraxella catarrhalis RH4] gi|295921078|gb|ADG61429.1| ribonuclease HII [Moraxella catarrhalis RH4] gi|326559229|gb|EGE09660.1| ribonuclease HII [Moraxella catarrhalis 46P47B1] gi|326560783|gb|EGE11150.1| ribonuclease HII [Moraxella catarrhalis 103P14B1] gi|326563524|gb|EGE13783.1| ribonuclease HII [Moraxella catarrhalis 12P80B1] gi|326569646|gb|EGE19698.1| ribonuclease HII [Moraxella catarrhalis BC1] gi|326574415|gb|EGE24357.1| ribonuclease HII [Moraxella catarrhalis 101P30B1] Length = 239 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 79/210 (37%), Positives = 108/210 (51%), Gaps = 25/210 (11%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFGINDSKKISHKKREE 70 P+ GIDEVGRGAL G + V A+IL N +NDSKK+S K+RE+ Sbjct: 17 HAPIVGIDEVGRGALFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQ 76 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++ IT A +I ID+ NI++AT+ + A+E + + + + + Sbjct: 77 LFDIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGN 136 Query: 130 PCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 +A+IKGD+ SIA ASI+AKV RDRLM K YP+Y D H Sbjct: 137 QLPSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPEYLLDKHK 196 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GY TAKH+ I E G HR +F P+R L Sbjct: 197 GYLTAKHKAAILEYGILPEHRRSFSPIREL 226 >gi|13476167|ref|NP_107737.1| ribonuclease HII [Mesorhizobium loti MAFF303099] gi|39932447|sp|Q986D0|RNH2_RHILO RecName: Full=Ribonuclease HII; Short=RNase HII gi|14026927|dbj|BAB53523.1| ribonuclease HII [Mesorhizobium loti MAFF303099] Length = 231 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 102/202 (50%), Positives = 137/202 (67%), Gaps = 2/202 (0%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISH 65 I E+P F E +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH Sbjct: 14 IVEKPDFSFETKAMADGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPEGLDDSKRLSH 73 Query: 66 KKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE L+ +I SA +S++S S + ID NI KA+L+A+ A+ L V P+ AL DGR Sbjct: 74 FQREALFLRILGSAQAVSMASISAEGIDGSNILKASLEAMRRALVGLSVRPKLALADGRD 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 +P LPC A+IKGD S SIAAASI+AKV RDR+M + YGF+ H+GY TA+H Sbjct: 134 VPPGLPCDGRALIKGDQRSQSIAAASIVAKVMRDRMMCGCGSHHDRYGFEVHMGYATARH 193 Query: 185 QQVIKEKGP-SCIHRLTFRPLR 205 + I+ GP + +HR++F P R Sbjct: 194 RTAIETHGPVARLHRVSFAPFR 215 >gi|33862058|ref|NP_893619.1| ribonuclease HII and HIII [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|39932293|sp|Q7UZZ2|RNH2_PROMP RecName: Full=Ribonuclease HII; Short=RNase HII gi|33634276|emb|CAE19961.1| Ribonuclease HII and HIII [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 209 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 74/200 (37%), Positives = 109/200 (54%), Gaps = 7/200 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREE 70 E ++ N GIDEVGRG++ GPV A++L + G+NDSKK++ KKR++ Sbjct: 11 EDHLQILNKDSEIGIDEVGRGSVFGPVFSVAVVLSKKSGLTLKKLGVNDSKKLTPKKRKD 70 Query: 71 LYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + KI + S+ ++ +S + ID I AT ++ AV+ L+ +P LIDG Sbjct: 71 FFPKIIALSSDYALGQSSVREIDLLGIRHATELSMIRAVKKLKHMPSELLIDGPLTLRLW 130 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +I GDS +SIA ASIIAKV RD LM KYP Y + GY T +H +K Sbjct: 131 EGNQRNIISGDSKFISIATASIIAKVMRDSLMERLESKYPGYFIFKNKGYGTKQHFSSLK 190 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 + G + +HR +F L L++ Sbjct: 191 KHGLTNLHRKSF--LNKLNL 208 >gi|154174298|ref|YP_001409163.1| ribonuclease HII [Campylobacter curvus 525.92] gi|189043573|sp|A7H121|RNH2_CAMC5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|112802182|gb|EAT99526.1| ribonuclease HII [Campylobacter curvus 525.92] Length = 183 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 7/176 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V GIDE GRGALAGP+ VAA +L+ G+NDSKK++ K+R+EL+ IT ++ I Sbjct: 3 VCGIDEAGRGALAGPMAVAACVLNAG--ISGLNDSKKLTPKRRKELFHLITQNSRYLIVY 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S++ ID+ + + A+ + ++K D+ Sbjct: 61 FSNEQIDELGLSECLRRALNLFKLYFAGCELLYDGNQNYGTG-----VQTMVKADAKVEE 115 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + AASI+AKV+RD LM K YP++G+ SH GY T H + I + G + I R +F Sbjct: 116 VGAASILAKVSRDELMCAWDKIYPNFGYKSHKGYGTKAHLEAITKYGQNEISRKSF 171 >gi|152965373|ref|YP_001361157.1| ribonuclease H [Kineococcus radiotolerans SRS30216] gi|189043607|sp|A6W7V4|RNH2_KINRD RecName: Full=Ribonuclease HII; Short=RNase HII gi|151359890|gb|ABS02893.1| Ribonuclease H [Kineococcus radiotolerans SRS30216] Length = 262 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 95/221 (42%), Gaps = 26/221 (11%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISH 65 P LE VAG+DEVGRG+LAGPV V +++D P G+ DSK ++ Sbjct: 8 VPPSLRLERQFLRAGHALVAGVDEVGRGSLAGPVSVGVLVVDAATRTAPTGLRDSKLLTP 67 Query: 66 KKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 RE L K+ A+ S + A ID I A A A+ L V P ++DG Sbjct: 68 AAREALAPKVRRWAVASAVGHAEPGEIDAVGIVAALRLAGRRALAQLPVPPDLVILDGNH 127 Query: 125 IPEDLPCQ-----------------------AFAVIKGDSISLSIAAASIIAKVTRDRLM 161 P + +K D ++A AS++AK TRD LM Sbjct: 128 DWLSDPREPSLLDALDGLGDPAAGLPCPAPAVTTRVKADVTCAAVAGASVLAKTTRDALM 187 Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 H+++P YG+ + GY H + + G HR ++R Sbjct: 188 TARHEEFPHYGWAGNKGYSAPDHLEALAAHGACPQHRRSWR 228 >gi|153934073|ref|YP_001384616.1| ribonuclease HII [Clostridium botulinum A str. ATCC 19397] gi|153935357|ref|YP_001388133.1| ribonuclease HII [Clostridium botulinum A str. Hall] gi|189043578|sp|A7FW05|RNH2_CLOB1 RecName: Full=Ribonuclease HII; Short=RNase HII gi|152930117|gb|ABS35617.1| ribonuclease HII [Clostridium botulinum A str. ATCC 19397] gi|152931271|gb|ABS36770.1| ribonuclease HII [Clostridium botulinum A str. Hall] Length = 269 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 8/195 (4%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKK 67 + + N + +AG+DEVGRG LAGP+V AA++LD F I DSKK+S KK Sbjct: 73 YNFDRRYG--NNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRVFNIKDSKKLSEKK 130 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL I AI +I+ ++ ID+ I + + + AVE L+V P L DG ++ Sbjct: 131 REELDIIIREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPDLVLSDGYAVK 190 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 +L + +IKGDS S+SIA++SIIAKV RD +M+ K YGF+ + GY T +H Q Sbjct: 191 -NLNIRNEFIIKGDSKSISIASSSIIAKVYRDSMMKEYSKGLNMYGFNHNAGYGTEEHVQ 249 Query: 187 VIKEKGPSCIHRLTF 201 IK+ GPS IHR++F Sbjct: 250 AIKKHGPSKIHRMSF 264 >gi|53803396|ref|YP_114857.1| ribonuclease HII [Methylococcus capsulatus str. Bath] gi|81681269|sp|Q604U3|RNH2_METCA RecName: Full=Ribonuclease HII; Short=RNase HII gi|53757157|gb|AAU91448.1| ribonuclease HII [Methylococcus capsulatus str. Bath] Length = 193 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 74/183 (40%), Positives = 100/183 (54%), Gaps = 2/183 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAGIDEVGRG +AGPV+ AA+I P G+ DSK++ +R L +I S + + Sbjct: 3 SLVAGIDEVGRGCIAGPVIAAAVIFAPGQDTHGLADSKRLRPDRRLVLAGRICSESLAWA 62 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + A ID+ NI +AT A+ AV L V+P +DG P C A++ GD+ Sbjct: 63 VGRAEVSEIDQLNILRATHLAMCRAVAALPVLPDWVRVDGNRYPPLD-CPGEAIVGGDAS 121 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAAASI+AKV RDR M + + P Y H GYPT H + +G S HR +F Sbjct: 122 VAEIAAASILAKVFRDREMEVLDRLCPGYALGVHKGYPTRLHIDRLASRGASFFHRRSFA 181 Query: 203 PLR 205 P+R Sbjct: 182 PVR 184 >gi|318059574|ref|ZP_07978297.1| ribonuclease HII [Streptomyces sp. SA3_actG] gi|318075436|ref|ZP_07982768.1| ribonuclease HII [Streptomyces sp. SA3_actF] Length = 233 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 72/197 (36%), Positives = 105/197 (53%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAGIDEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EAPTHSVERSLRATTGAKVVAGIDEVGRGAWAGPVSVCAAVTGLRRPPEGLTDSKLLTPK 63 Query: 67 KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L ++ + AS + ID+ + A A A++ L V P ++DG Sbjct: 64 RRVALVVELERWVTAHSLGHASPEEIDELGMTAALRLAAGRALDGLPVRPDWVILDGNHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P VIKGD +S+AAAS++AKV RDRLM ++ D+ F ++ GYP+ H+ Sbjct: 124 YLGAPWNVRTVIKGDQSCVSVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYPSPAHK 183 Query: 186 QVIKEKGPSCIHRLTFR 202 + E+GP+ HRL++ Sbjct: 184 TALAERGPTPYHRLSWS 200 >gi|25028481|ref|NP_738535.1| ribonuclease HII [Corynebacterium efficiens YS-314] gi|259507538|ref|ZP_05750438.1| ribonuclease HII [Corynebacterium efficiens YS-314] gi|39932418|sp|Q8FP63|RNH2_COREF RecName: Full=Ribonuclease HII; Short=RNase HII gi|23493766|dbj|BAC18735.1| putative ribonuclease HII [Corynebacterium efficiens YS-314] gi|259164858|gb|EEW49412.1| ribonuclease HII [Corynebacterium efficiens YS-314] Length = 231 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 98/197 (49%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREE 70 E + + PVAG+DE GRGA GP+ +AA IL P + DSK++S R Sbjct: 12 TYEVALSRHGLGPVAGVDEAGRGACCGPISIAACILPDRPIADLAVLTDSKQLSPPVRAR 71 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L + A+ S+ S ID+ I A + + AV L+V P L D IP L Sbjct: 72 LMPLVKKHAVAWSVIHISAADIDRFGIQHANISGMRRAVAALEVRPGYVLTDAFRIP-GL 130 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC + + GD+ + IAAAS++AK TRD +M +++P YG H GY T H ++ Sbjct: 131 PCPSLPIPGGDASARCIAAASVLAKQTRDEIMTDMAQQFPQYGLAGHKGYSTKVHMDAVR 190 Query: 190 EKGPSCIHRLTFRPLRN 206 G S HR ++ + Sbjct: 191 RHGASPQHRYSYANVAK 207 >gi|313673941|ref|YP_004052052.1| ribonuclease h [Calditerrivibrio nitroreducens DSM 19672] gi|312940697|gb|ADR19889.1| Ribonuclease H [Calditerrivibrio nitroreducens DSM 19672] Length = 178 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 90/174 (51%), Gaps = 2/174 (1%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSAS 87 +DEVGRG AGPVV AI+L I DSKK++ KR L E I + I Sbjct: 1 MDEVGRGCFAGPVVAVAILLKDGFYDKRIIDSKKLAENKRVVLAELIKENMLDCGIGVVC 60 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 IDK NI +AT A+ A+ ++V +ID + A IK + + +A Sbjct: 61 AGLIDKLNILRATKQAMQVAISRIRVGYDRVVIDAVKLNNLNT-PHEAHIKAEDKFMEVA 119 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AASI+AKV RD LM+ H +P Y + + GY T H + I++ G + +HR TF Sbjct: 120 AASIVAKVYRDNLMKDMHYLFPQYNWYKNKGYGTPDHIEAIRKFGITPLHRKTF 173 >gi|83754963|pdb|2ETJ|A Chain A, Crystal Structure Of Ribonuclease Hii (Ec 3.1.26.4) (Rnase Hii) (Tm0915) From Thermotoga Maritima At 1.74 A Resolution Length = 250 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 84/188 (44%), Positives = 111/188 (59%), Gaps = 4/188 (2%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + +K VAG+DE GRG LAGPVV AA++L+ GINDSK++S KRE L ++I Sbjct: 17 ELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE--IEGINDSKQLSPAKRERLLDEIX 74 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A + I AS + ID +NI AT A A+ENL V P L+DG+ +L + Sbjct: 75 EKAAVGIGIASPEEIDLYNIFNATKLAXNRALENLSVKPSFVLVDGK--GIELSVPGTCL 132 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGD S I AASI+AKV RDRL H+ YP + F H GY T +H I++ G I Sbjct: 133 VKGDQKSKLIGAASIVAKVFRDRLXSEFHRXYPQFSFHKHKGYATKEHLNEIRKNGVLPI 192 Query: 197 HRLTFRPL 204 HRL+F P+ Sbjct: 193 HRLSFEPV 200 >gi|332638611|ref|ZP_08417474.1| ribonuclease HII [Weissella cibaria KACC 11862] Length = 254 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 78/196 (39%), Positives = 107/196 (54%), Gaps = 4/196 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + + +AG+DEVGRG LAGPVV AA+++D ++DSK++S K R L Sbjct: 59 LSFERDAWSEGL-VLAGVDEVGRGPLAGPVVAAAVVIDDQFDLLAVHDSKQLSEKARLAL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I + + ID NI++A+ A+ A+ENL V LID ++ DLP Sbjct: 118 DAAIKEEVVAFAFGVVDAAAIDTLNIYEASRVAMKQAIENLSVQVDGLLID--AMTVDLP 175 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGD S+SI AASI+AK RD LM YP YGFD + GY TA+H + Sbjct: 176 LPQEKLIKGDDRSISIGAASILAKNFRDDLMAAYAVDYPGYGFDHNAGYGTAEHLAGLAA 235 Query: 191 KGPSCIHRLTFRPLRN 206 G + IHR TF P++ Sbjct: 236 YGVTPIHRRTFAPVKQ 251 >gi|300741389|ref|ZP_07071410.1| ribonuclease HII [Rothia dentocariosa M567] gi|300380574|gb|EFJ77136.1| ribonuclease HII [Rothia dentocariosa M567] Length = 264 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 100/232 (43%), Gaps = 40/232 (17%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKR 68 + E E + +AG+DEVGRGALAGPV V +LD N G+ DSK ++ K+R Sbjct: 5 NLEHEQKLFTAGYRLIAGLDEVGRGALAGPVSVGVAVLDQQNQRILEGLTDSKALTPKRR 64 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVE---NLQVIPRSALIDGRSI 125 E L +I +I + ID + A A A+ + P +AL+DG+ Sbjct: 65 EALIPRIQKWCSYAIGHTTPAEIDVLGMTYALRLAAQRALADLAYRGLYPEAALLDGKHD 124 Query: 126 P-----------------------------------EDLPCQAFAVIKGDSISLSIAAAS 150 + +IKGD SIAAAS Sbjct: 125 WLSPPPENLFDSMDPVHRRYEELLHRVWNGANSAVEKGWSGPVTTIIKGDYQCASIAAAS 184 Query: 151 IIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AKV RD M + P YG+ + GY + H+Q I E GPS HRL++ Sbjct: 185 VVAKVDRDAFMESLSAENPHYGWVKNKGYGSVAHRQAISEYGPSIYHRLSWS 236 >gi|251772986|gb|EES53543.1| Ribonuclease HII [Leptospirillum ferrodiazotrophum] Length = 195 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 70/190 (36%), Positives = 95/190 (50%), Gaps = 11/190 (5%) Query: 28 GIDEVGRGALAGPVVVAAIILDP---NNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 G+DEVGRG LAGPVV A + GI DSK +S +R+EL I + A +S+ Sbjct: 2 GVDEVGRGPLAGPVVAACVFFSAPVSRLSRLGIADSKSLSSDRRDELSRLIHTEADHVSL 61 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-----SALIDGRSIPEDLPCQAFAVIK 138 +S +++ N+ +AT A+ A++ L +DGR + Q V+ Sbjct: 62 GWSSVDEVNELNVRQATFLAMNRALQQLPPFLMRDSRLCVAVDGRDKIPGVEIQQRTVVG 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD LS+AAASI+AKV RD M +P YGF H GY T +H+ I G S HR Sbjct: 122 GDRTVLSVAAASIVAKVARDSYMEKLDALFPGYGFAKHKGYGTEEHRNAILRLGLSPHHR 181 Query: 199 LTFRPLRNLS 208 F R L Sbjct: 182 PLF--CRKLL 189 >gi|121998236|ref|YP_001003023.1| ribonuclease HII [Halorhodospira halophila SL1] gi|189043603|sp|A1WX09|RNH2_HALHL RecName: Full=Ribonuclease HII; Short=RNase HII gi|121589641|gb|ABM62221.1| RNase HII [Halorhodospira halophila SL1] Length = 195 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 76/192 (39%), Positives = 106/192 (55%), Gaps = 5/192 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 + W V G+DE GRG AGP V A + G+ DSK++S + RE I S A Sbjct: 4 SRGAWGVVGVDEAGRGPWAGP--VVAAAVVLAEPIAGVTDSKRLSARSRERAAALIRSEA 61 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI--DGRSIPEDLPCQAFAV 136 + + A ID NI +AT A+ AV + A + DGR IP+DLP A V Sbjct: 62 VAWGVGRADVTEIDALNIRRATFLAMARAVAVVAETSPIAEVLVDGREIPDDLPAPARPV 121 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 + GD++ +I+AASI+AK RD M + + YP YGF H GY TA+H++ ++E GP + Sbjct: 122 VGGDALEPAISAASILAKTLRDAEMVLLDEAYPGYGFGRHKGYGTAEHRRALEELGPCPM 181 Query: 197 HRLTFRPLRNLS 208 HR +F P+R L Sbjct: 182 HRRSFAPVRRLL 193 >gi|113953937|ref|YP_729607.1| ribonuclease HII [Synechococcus sp. CC9311] gi|122945826|sp|Q0ID65|RNH2_SYNS3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|113881288|gb|ABI46246.1| ribonuclease HII [Synechococcus sp. CC9311] Length = 197 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 66/187 (35%), Positives = 102/187 (54%), Gaps = 7/187 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRG L GPV AA++L + G+ DSK ++ +R L I + A Sbjct: 9 IAGVDEVGRGCLFGPVFAAAVVLSDHAAEHLQAAGLTDSKALTPSRRAALVPLIEAHAHA 68 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + +S + +D+ I AT A+ A++ L P+ L+DG +++GD Sbjct: 69 WGLGQSSARAVDRDGIRSATEQAMLCALQRLPCRPQLVLVDGVLPLRLWEGSQRTIVRGD 128 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S +IAAAS++AK RD L+R ++P YG + H GY TA+H+ + GP+ +HR + Sbjct: 129 SSHAAIAAASVLAKEARDALIRRLSNRFPGYGLERHAGYGTAQHRAALLACGPTPLHRHS 188 Query: 201 FRPLRNL 207 F LR L Sbjct: 189 F--LRKL 193 >gi|159904166|ref|YP_001551510.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9211] gi|159889342|gb|ABX09556.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9211] Length = 196 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 68/181 (37%), Positives = 109/181 (60%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-I 80 +AG+DEVG+G L GPV AA++L+ ++ G+ DSK ++ KR +L+ +I A Sbjct: 7 IAGLDEVGKGCLFGPVFAAAVMLNNSSENQLLDAGLKDSKLLTKAKRAQLFPEILKLADN 66 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I AS + ID I KAT A+ A+ L + P LIDG +I+G+ Sbjct: 67 WGIGQASAKEIDSQGIRKATEKAMLRAIHKLTIHPSLLLIDGSLPLRLWKGNQENLIRGE 126 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S S +IAAAS+IAK +RD++++ K++P YG +++VGY T+ H++ + + GP+ +HR + Sbjct: 127 SKSPAIAAASVIAKESRDQVIKRLAKQFPGYGLETNVGYGTSNHRKALIKSGPTQLHRKS 186 Query: 201 F 201 F Sbjct: 187 F 187 >gi|257784502|ref|YP_003179719.1| Ribonuclease H [Atopobium parvulum DSM 20469] gi|257473009|gb|ACV51128.1| Ribonuclease H [Atopobium parvulum DSM 20469] Length = 257 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 78/191 (40%), Positives = 109/191 (57%), Gaps = 5/191 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + + V G+DEVGRG++AGP+ V A+ L I +G+NDSKK++ KRE L Sbjct: 60 YRFQKEF--SGGGLVVGVDEVGRGSVAGPLTVCAVCLPDEPIIYGLNDSKKLTATKREIL 117 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 E+I A I I+ S Q ID+ + + DA+ AV+N + P LIDG + Sbjct: 118 AEQIQEVATAIGIAHISPQRIDEVGMAQCLRDAMLQAVKNTGIEPDCVLIDGNPMHIHP- 176 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + ++KGD+ SIAAASI+AKVTRD LM ++YP Y GY +A+H + I E Sbjct: 177 -KEKTLVKGDARIASIAAASIVAKVTRDALMVAYDEEYPGYYLAECKGYASAEHIKAIGE 235 Query: 191 KGPSCIHRLTF 201 KG S IHR +F Sbjct: 236 KGLSPIHRASF 246 >gi|78185903|ref|YP_373946.1| ribonuclease H [Chlorobium luteolum DSM 273] gi|97189134|sp|Q3B6X8|RNH2_PELLD RecName: Full=Ribonuclease HII; Short=RNase HII gi|78165805|gb|ABB22903.1| RNase HII [Chlorobium luteolum DSM 273] Length = 208 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 7/194 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKRE 69 E ++ V GIDE GRG LAGPVV AA++ P +NDSKK++ R Sbjct: 9 EYLLWND-FLRVCGIDEAGRGPLAGPVVAAAVVFPRWFSPDEGILRRLNDSKKLTPSLRR 67 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EL I A ++ + H+ ID+ NI +AT+ A+ A E+L P LIDG + Sbjct: 68 ELAPAIREEAECWAVEAVDHETIDRINILRATMLAMNRAAESLPRQPDLLLIDGNRFTPN 127 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +P ++ GD++ SIAAAS++AK RDR+M ++YP+YGF+ + GY T +H + I Sbjct: 128 IPVPYQTIVGGDALVFSIAAASVLAKTERDRMMEEYAERYPEYGFERNAGYGTREHVEAI 187 Query: 189 KEKGPSCIHRLTFR 202 + G S IHR +FR Sbjct: 188 RRHGRSPIHRTSFR 201 >gi|295836133|ref|ZP_06823066.1| ribonuclease HII [Streptomyces sp. SPB74] gi|197695228|gb|EDY42161.1| ribonuclease HII [Streptomyces sp. SPB74] Length = 233 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 72/197 (36%), Positives = 104/197 (52%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAGIDEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EAPTHSVERSLRATTGAKVVAGIDEVGRGAWAGPVSVCAAVTGLRRAPEGLTDSKLLTPK 63 Query: 67 KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L ++ + AS + ID + A A A++ L V P ++DG Sbjct: 64 RRAALVVELEKWVTAHSLGHASPEEIDALGMTAALRLAAVRALDGLPVRPDWVILDGNHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P VIKGD +S+AAAS++AKV RDRLM ++ D+ F ++ GYP+ H+ Sbjct: 124 YLGAPWNVRTVIKGDQSCVSVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYPSPAHK 183 Query: 186 QVIKEKGPSCIHRLTFR 202 + E+GP+ HRL++ Sbjct: 184 TALAERGPTPYHRLSWS 200 >gi|33519750|ref|NP_878582.1| ribonuclease HII [Candidatus Blochmannia floridanus] gi|39932315|sp|Q7VRD2|RNH2_BLOFL RecName: Full=Ribonuclease HII; Short=RNase HII gi|33504095|emb|CAD83356.1| ribonuclease HII [Candidatus Blochmannia floridanus] Length = 205 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 77/198 (38%), Positives = 108/198 (54%), Gaps = 5/198 (2%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHKKREELY 72 K VAG+DEVG G+L G VV +A+++ D + G+ DSK +S+KKR Sbjct: 5 KYFLSKKATIVAGVDEVGCGSLVGAVVASAVLMLYPDQEQLFSGLIDSKALSNKKRLRFC 64 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLP 130 I + SI + ID+ NI +A L +I A+ NL +IP LIDG+ P + Sbjct: 65 NYIQKYSLHWSIGMVNVTEIDQLNIFQARLLSIKRAICNLSMIPDLVLIDGKHAPSLNKN 124 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +KGDS I+AASIIAKVTRD+ M + H +YP YGF + GY T H + + Sbjct: 125 ILYQCFVKGDSRIPVISAASIIAKVTRDQAMMMLHTQYPKYGFHRNKGYATVFHLKQLDL 184 Query: 191 KGPSCIHRLTFRPLRNLS 208 GP+ HR TF P++ + Sbjct: 185 YGPTIYHRKTFAPVKYML 202 >gi|307720133|ref|YP_003891273.1| Ribonuclease H [Sulfurimonas autotrophica DSM 16294] gi|306978226|gb|ADN08261.1| Ribonuclease H [Sulfurimonas autotrophica DSM 16294] Length = 182 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 67/185 (36%), Positives = 95/185 (51%), Gaps = 7/185 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M + GIDE GRG LAG +V+A IL + G+NDSKK++ KKRE LYE I +A Sbjct: 1 MGVLCGIDEAGRGPLAGDLVMAGCIL--HVSVDGLNDSKKLTAKKREALYELIVENASYH 58 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I S ID + I + + NL+ + +++ D Sbjct: 59 IVKFSAHDIDNNGISACLKKGLIDILNNLKADKYLFDGN----QTYGVKNLATMVQADRK 114 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++AASI+AKVT D + A KKYP+Y F+ H GY T H +IK+ G IHR T++ Sbjct: 115 IAEVSAASILAKVTHDVDILEAAKKYPEYQFEKHKGYGTKLHVAMIKKYGYCEIHRKTYK 174 Query: 203 PLRNL 207 ++ L Sbjct: 175 -IKAL 178 >gi|255321778|ref|ZP_05362933.1| ribonuclease HII [Campylobacter showae RM3277] gi|255301258|gb|EET80520.1| ribonuclease HII [Campylobacter showae RM3277] Length = 191 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 60/181 (33%), Positives = 95/181 (52%), Gaps = 8/181 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRGALAGP+ VAA +L + G+NDSKK++ K+REEL ++I ++ I+ Sbjct: 9 ICGIDEAGRGALAGPMAVAACVLKRD--IAGLNDSKKLTEKRREELLKEIIKNSEFLIAY 66 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S++ ID+ + + + L DG + ++ D Sbjct: 67 FSNEQIDELGLSEC--LRRALRLFKAHFTDCELLYDGNANYGTG---IKTMVGADGKVAQ 121 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++AASI+AKV+RD LM+ + YG+ +H GY T H I G S + R +FR ++ Sbjct: 122 VSAASILAKVSRDALMQAWDGVHSGYGYATHKGYGTKAHLDAIARLGDSPLQRRSFR-VK 180 Query: 206 N 206 + Sbjct: 181 S 181 >gi|300854482|ref|YP_003779466.1| putative ribonuclease HII [Clostridium ljungdahlii DSM 13528] gi|300434597|gb|ADK14364.1| predicted ribonuclease HII [Clostridium ljungdahlii DSM 13528] Length = 285 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 79/203 (38%), Positives = 109/203 (53%), Gaps = 11/203 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHK 66 +E + AG+DEVGRG LAGP+ A+IL+ N GI DSKK++ K Sbjct: 88 YEFDKSFGNHIYT--AGVDEVGRGPLAGPIAAGAVILNLNYNEDRELILGIKDSKKLTPK 145 Query: 67 KREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL + I A +I+ ++ IDK I + + AVE L++ AL DG ++ Sbjct: 146 RRCELAKVIKERALAYNIAVINNIEIDKRGISWCNNEVLKRAVEGLKLPVTMALSDGYAV 205 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 VIKGD+ S SIAAASIIAKV RD LM Y +Y F+ + GY T H Sbjct: 206 KNLST-NNEFVIKGDTKSASIAAASIIAKVYRDSLMEEYSHLYTNYKFEQNSGYGTKDHI 264 Query: 186 QVIKEKGPSCIHRLTFRPLRNLS 208 + IK+ G IHR++F L+N+ Sbjct: 265 ESIKKYGICKIHRVSF--LKNIL 285 >gi|317968686|ref|ZP_07970076.1| ribonuclease HII [Synechococcus sp. CB0205] Length = 191 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 68/183 (37%), Positives = 97/183 (53%), Gaps = 6/183 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 +AG+DEVGRG GPV A++L G+ DSK +S K+R +L I A Sbjct: 2 RIAGVDEVGRGCWFGPVFAGAVVLSDAARETLSAAGLTDSKALSAKRRSQLVPLILEQAE 61 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPEDLPCQAFAVIK 138 ++ AS Q +D I AT A+ A++ L P L+DG V++ Sbjct: 62 SWALGQASAQEVDGLGIRSATERAMLRALQRLGSPAPDHVLVDGNLPLRLWSGSQETVVR 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS L IAAAS++AK RD L+ ++YP YGF+ H GY TA+H+ + GP+ +HR Sbjct: 122 GDSAHLEIAAASVLAKQARDALLVRLGQRYPGYGFERHAGYGTAQHRAAVLSLGPTQLHR 181 Query: 199 LTF 201 +F Sbjct: 182 RSF 184 >gi|228470569|ref|ZP_04055426.1| ribonuclease HII [Porphyromonas uenonis 60-3] gi|228307696|gb|EEK16672.1| ribonuclease HII [Porphyromonas uenonis 60-3] Length = 204 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 71/181 (39%), Positives = 102/181 (56%), Gaps = 2/181 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRGALAG + AA+I + DSKK++ K+REEL I A ++ Sbjct: 15 CGCDEAGRGALAGDLYAAAVIWPDTLDHPHLRDSKKLTAKQREELRHFIEEHATAWAVGV 74 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAVIKGDSISL 144 A+ Q I + NI A++ A+ A+E L P LIDG P + ++KGD L Sbjct: 75 ATVQEIQQINILHASMLAMQRAIEALSCTPERLLIDGNYYDPRPDEVEYHTIVKGDDRYL 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AK RD M +YP YG++ + GYPTA+H++ I++ G +HR F+ L Sbjct: 135 AIAAASILAKTHRDEYMTQQALEYPHYGWEQNKGYPTAQHREGIRQHGSCPLHRQGFQLL 194 Query: 205 R 205 + Sbjct: 195 Q 195 >gi|281357062|ref|ZP_06243552.1| Ribonuclease H [Victivallis vadensis ATCC BAA-548] gi|281316620|gb|EFB00644.1| Ribonuclease H [Victivallis vadensis ATCC BAA-548] Length = 223 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 4/198 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E ++ VAG+DEVGRG LAGPVV AA++ G+ DSK++ RE L Sbjct: 16 LRPECECWQEGFCFVAGVDEVGRGPLAGPVVAAAVVFPRGVPWPGVYDSKQLKAADRERL 75 Query: 72 YEKITSS--AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +I S I I + ID+ NI AT A+ AV + + ++L Sbjct: 76 DREIRSVPGVRIGIGEVPVEEIDRINILNATHRAMREAVLAAGEVDFILVDG--RPVKNL 133 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 PC + A++KGDS S SIAAASI+AKV RDRLM ++P YGF H GY TA H + ++ Sbjct: 134 PCPSRALVKGDSRSASIAAASIVAKVYRDRLMDELDLRWPGYGFKEHKGYGTAAHLESLR 193 Query: 190 EKGPSCIHRLTFRPLRNL 207 GP HR +FRP+R + Sbjct: 194 RLGPCPAHRKSFRPVREI 211 >gi|268680590|ref|YP_003305021.1| ribonuclease H [Sulfurospirillum deleyianum DSM 6946] gi|268618621|gb|ACZ12986.1| Ribonuclease H [Sulfurospirillum deleyianum DSM 6946] Length = 182 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 6/176 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 GIDE GRG LAGP+VVA +L G+ DSK++S K+RE L+E++ ++A I Sbjct: 3 CGIDEAGRGCLAGPLVVAGAVLKE--PVKGLADSKQLSEKQREILFERLQNAAEFKIVFC 60 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 H+ +D + AI + + ++K D+ + Sbjct: 61 DHEMVDTKGLSACLKYAIETIKAHFCEHEILMDGNCTFGVSG----ISTMVKADAKVAEV 116 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +AASI+AKV+RDR M YP+Y F+ H GY +A H ++I++ G IHR +F+ Sbjct: 117 SAASILAKVSRDRYMCDIAPSYPEYAFEKHKGYGSALHVKMIQQFGYCDIHRKSFK 172 >gi|160947174|ref|ZP_02094341.1| hypothetical protein PEPMIC_01107 [Parvimonas micra ATCC 33270] gi|158446308|gb|EDP23303.1| hypothetical protein PEPMIC_01107 [Parvimonas micra ATCC 33270] Length = 210 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 72/192 (37%), Positives = 104/192 (54%), Gaps = 5/192 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK 74 E K + G+DEVGRG LAGPVV AII+ ++ G+ DSKK+S KKR LY+K Sbjct: 6 ELENIYKKYNLIIGVDEVGRGCLAGPVVSCAIIMKKDSKIEGVTDSKKLSKKKRLALYDK 65 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR----SIPEDL 129 I + I + ID+ NI +A+ A+ A+ N++ + + + + D+ Sbjct: 66 ILEECVGYGIGIVDNVKIDEINIKQASRFAMKIAISNIKDLDGNKVSGDFLITDAEKVDV 125 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +I GD +S ++ ASIIAK RD + KKYP+Y F +VGY T H + I Sbjct: 126 DIPQINLIHGDELSYVVSCASIIAKEYRDSMFVEYEKKYPNYNFIKNVGYGTKAHYKGID 185 Query: 190 EKGPSCIHRLTF 201 E G + IHR+TF Sbjct: 186 EFGVTPIHRVTF 197 >gi|319784761|ref|YP_004144237.1| ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170649|gb|ADV14187.1| Ribonuclease H [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 233 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 99/200 (49%), Positives = 137/200 (68%), Gaps = 2/200 (1%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E+P F E + +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH + Sbjct: 16 EKPDFSFETKAMAEGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPDGLDDSKRLSHLQ 75 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L+ +I SA +S++S S + ID NI KA+L+A+ A+ L + P+ AL DGR +P Sbjct: 76 REALFLRILGSAQAVSMASISAEGIDGSNILKASLEAMRRALVGLSIRPKLALADGRDVP 135 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LPC+ A+IKGD S SIAAASI+AKV RDR+M + YGF+ H+GY T +H+ Sbjct: 136 PGLPCEGRALIKGDQRSQSIAAASIVAKVMRDRMMCGCGNHHDRYGFEVHMGYATVRHRT 195 Query: 187 VIKEKGP-SCIHRLTFRPLR 205 I+ GP + +HR++F P R Sbjct: 196 AIEAHGPVARLHRVSFAPFR 215 >gi|319441364|ref|ZP_07990520.1| ribonuclease HII [Corynebacterium variabile DSM 44702] Length = 227 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 76/195 (38%), Positives = 102/195 (52%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREE 70 LE V + + PVAG+DE GRGA GPV +AA IL P +P G+ DSKK++ KKR+ Sbjct: 14 TLEWAVHKAGLDPVAGVDEAGRGACCGPVTIAACILPPGPLPELDGLTDSKKLTAKKRDR 73 Query: 71 LYEKITSSAIISISSASHQ-YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++ I A+ Y+D I A L + AV L V P L D I Sbjct: 74 LFDIIVDVAVDYAVVHVPASYVDDWGIQHANLGGMRRAVARLDVRPGYILTDAMKIDGFT 133 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 V+KGD I I+AAS++AKV+RDR+M +YP YG H GY TA H + + Sbjct: 134 R-PHLPVVKGDLICRCISAASVLAKVSRDRMMVDLDARYPGYGLAGHKGYGTAAHMESVC 192 Query: 190 EKGPSCIHRLTFRPL 204 G + HR T+ + Sbjct: 193 LLGGTPEHRYTYSNV 207 >gi|87125028|ref|ZP_01080875.1| Ribonuclease HII and HIII [Synechococcus sp. RS9917] gi|86167348|gb|EAQ68608.1| Ribonuclease HII and HIII [Synechococcus sp. RS9917] Length = 205 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 7/184 (3%) Query: 29 IDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 +DEVGRG GPV+ AA++L + G+ DSK++S ++R +L I + A ++ Sbjct: 1 MDEVGRGCWFGPVLAAAVVLSEPAASRLLAQGLTDSKRLSQRRRAQLVPLIEAEACAWAL 60 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 AS Q ID I AT A+ A++ L P L+DG +++GDS Sbjct: 61 GQASAQDIDSGGIRAATELAMLRALQRLPRCPDQVLVDGVLPLRLWLGPQETIVRGDSHC 120 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 SIAAAS++AK RD L++ +P+YG + H GY TA+H+Q + GP+ +HR TF Sbjct: 121 ASIAAASVLAKQARDGLIQRLACHFPEYGLERHAGYGTARHRQALLRHGPTPLHRRTF-- 178 Query: 204 LRNL 207 LR L Sbjct: 179 LRKL 182 >gi|308235361|ref|ZP_07666098.1| ribonuclease HII [Gardnerella vaginalis ATCC 14018] gi|311115100|ref|YP_003986321.1| ribonuclease HII [Gardnerella vaginalis ATCC 14019] gi|310946594|gb|ADP39298.1| ribonuclease HII [Gardnerella vaginalis ATCC 14019] Length = 227 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 103/220 (46%), Gaps = 28/220 (12%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKIS 64 P F E + + V G+DEVGRG+LAGPV+V A + + P G+ DSK I+ Sbjct: 5 PSFNFEQDLLKSGFDWVIGLDEVGRGSLAGPVMVGAALFGADKINSGYFPDGLADSKLIN 64 Query: 65 HKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA----- 118 KRE L E + + ++ S +++ ID+ I A A A+ ++Q R Sbjct: 65 AHKREGLLEPLENWCDAFAVGSCTNREIDEWGISYALGVAAIRAISDVQNSMRYKLENAH 124 Query: 119 ---------------LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + D P + ++K D S++AAS+IAKVTRD LM Sbjct: 125 IAAILDGPFNYIGKVSGTFDAPSIDFPVKVHTLVKADQKCASVSAASVIAKVTRDSLMTS 184 Query: 164 A--HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 KY Y + + GY + H+ I E GPS +HR+++ Sbjct: 185 LSDDPKYKIYDWAHNKGYGSKSHRAAILEYGPSDLHRISW 224 >gi|242309717|ref|ZP_04808872.1| ribonuclease [Helicobacter pullorum MIT 98-5489] gi|239523718|gb|EEQ63584.1| ribonuclease [Helicobacter pullorum MIT 98-5489] Length = 204 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 9/192 (4%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP---FGINDSKKISHKKREE 70 LE + N + GIDE GRG + G + V +IL P + DSKK+S K R+ Sbjct: 7 LELPLY--NPLEICGIDEAGRGCIGGSLFVCGVILTPTFPKILLEQLQDSKKLSQKTRDN 64 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L +I A + S + ID + +++ + NLQ + Sbjct: 65 LAPQIQKYAKFHLVKKSAEEIDTKGLSLCIKESLQEILTNLQAPHYLFDGNCNFGIHS-- 122 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 +IKGDS SI+AASI+AK +D+ YP YGF SH GY T +H + I + Sbjct: 123 --LQTLIKGDSKIPSISAASILAKNAKDKESAKLDNLYPQYGFKSHKGYGTKEHLKAILD 180 Query: 191 KGPSCIHRLTFR 202 G HR +++ Sbjct: 181 FGYCKEHRKSYK 192 >gi|326403378|ref|YP_004283459.1| ribonuclease HII [Acidiphilium multivorum AIU301] gi|325050239|dbj|BAJ80577.1| ribonuclease HII [Acidiphilium multivorum AIU301] Length = 199 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 87/199 (43%), Positives = 112/199 (56%), Gaps = 9/199 (4%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG---INDSKKISHK 66 P F E + VAG+DEVGRG LAGPVV AA IL + P I+DSK++S Sbjct: 2 PDFSRELALG----GVVAGVDEVGRGPLAGPVVAAAAILPADLPPEIAALIDDSKRLSPA 57 Query: 67 KREELYEK-ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +RE I S A IS ++AS I + NI +A+L A+ AV L V P L+DG+ + Sbjct: 58 RREAALAALIESGAAISAAAASVAEIARLNILQASLLAMRRAVARLAVRPDHVLVDGQ-V 116 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 DLP V+ GD +SLSIAAASI AK+ RDR M ++YP YG+ + GY T H+ Sbjct: 117 APDLPMPCTPVVGGDGLSLSIAAASIAAKLVRDRAMSRLDRRYPGYGWARNSGYATKTHR 176 Query: 186 QVIKEKGPSCIHRLTFRPL 204 I G + HR F PL Sbjct: 177 DAILGLGITPHHRRGFGPL 195 >gi|257455290|ref|ZP_05620525.1| ribonuclease HII [Enhydrobacter aerosaccus SK60] gi|257447252|gb|EEV22260.1| ribonuclease HII [Enhydrobacter aerosaccus SK60] Length = 240 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 99/222 (44%), Gaps = 40/222 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP------------------------NNIPFGINDS 60 + G+DEVGRG L G VVV A+I D N+ + DS Sbjct: 5 FIIGVDEVGRGPLLGDVVVCALIFDKAILSIKEDSLSTDLPTADSVSISHNHPLSALTDS 64 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S KKRE L+ I +A + S ID+ NI +ATL + AV + + Sbjct: 65 KKLSEKKREALFSLIEQTASAHQVVKISASLIDQLNILQATLLGMKQAVAGVMAQMLAQY 124 Query: 120 IDGRSIPEDLPCQA---------------FAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 + A++KGD I+ AS+IAKVTRDR M Sbjct: 125 PTATFSVMVDGNKLPVLFDLPNYQQITHEQAIVKGDGKHACISGASVIAKVTRDRDMVAL 184 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 K YPDYG + H GYPTA H Q I+ G +HR +F P++ Sbjct: 185 SKLYPDYGIEQHKGYPTAAHIQAIEHYGILPMHRKSFAPIKQ 226 >gi|326575992|gb|EGE25915.1| ribonuclease HII [Moraxella catarrhalis CO72] Length = 248 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 78/210 (37%), Positives = 106/210 (50%), Gaps = 25/210 (11%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFGINDSKKISHKKREE 70 P+ GIDEVGRG L G + V A+IL N +NDSKK+S K+RE+ Sbjct: 26 HAPIVGIDEVGRGTLFGNMTVGAVILPNELSGRFDEIDLTNTKISLLNDSKKLSEKRREQ 85 Query: 71 LYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L++ IT A +I ID+ NI++AT+ + A+E + + + + + Sbjct: 86 LFDIITDLALDYAIVDVPSTIIDQINIYQATMLGMKIAIETIIIKNNLNEKNTTILIDGN 145 Query: 130 PCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 +A+IKGD+ SIA ASI+AKV RDRLM K YP Y D H Sbjct: 146 QLPSMDGSLGEHFHQIYAMIKGDATHSSIACASILAKVHRDRLMIQHAKSYPKYLLDKHK 205 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 GY TAKH+ I E G HR +F P+R L Sbjct: 206 GYLTAKHKAAILEYGILPEHRRSFSPIREL 235 >gi|308183433|ref|YP_003927560.1| ribonuclease HII [Helicobacter pylori PeCan4] gi|308065618|gb|ADO07510.1| ribonuclease HII [Helicobacter pylori PeCan4] Length = 204 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 63/190 (33%), Positives = 91/190 (47%), Gaps = 9/190 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS-- 78 V GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L KI + Sbjct: 1 MVLGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLENKIKTHGE 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAV 136 + S + ID + AI +EN + + IDG + + Sbjct: 61 VGFFVVKKSAEAIDNLGLGACLKLAIQEILENNRSLANQIKIDGNTAFGLNKRYPNIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDEKVAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRRSF-TLKN 189 >gi|21675069|ref|NP_663134.1| ribonuclease HII [Chlorobium tepidum TLS] gi|39932423|sp|Q8KAA5|RNH2_CHLTE RecName: Full=Ribonuclease HII; Short=RNase HII gi|21648308|gb|AAM73476.1| ribonuclease HII [Chlorobium tepidum TLS] Length = 205 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 85/201 (42%), Positives = 116/201 (57%), Gaps = 7/201 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN----DSKKISHKKR 68 + E + E + V GIDE GRG LAGPVV AA++ + P GI DSKK++ + R Sbjct: 5 DFEYPLWES-LSQVCGIDEAGRGPLAGPVVAAAVVFPRHFRPTGIFAKLDDSKKLTAELR 63 Query: 69 EELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 +EL I SA ++ + ID+ NI +AT+ A+ AVE+L P L+DG Sbjct: 64 DELALAIRESAESWALGVVDAETIDRINILQATMLAMNLAVESLGSTPEFLLVDGNRFRP 123 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP ++KGDS SIAAAS++AK RD LM + +YP+YGF+ H GYPTA+H + Sbjct: 124 VLPIPYQTIVKGDSKVFSIAAASVLAKTHRDELMTTSAAEYPEYGFEVHFGYPTARHVEA 183 Query: 188 IKEKGPSCIHRLTFRPLRNLS 208 I G IHR +F+ LR L Sbjct: 184 IARHGRCAIHRQSFK-LRKLG 203 >gi|227495319|ref|ZP_03925635.1| possible ribonuclease H [Actinomyces coleocanis DSM 15436] gi|226831189|gb|EEH63572.1| possible ribonuclease H [Actinomyces coleocanis DSM 15436] Length = 228 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 61/218 (27%), Positives = 92/218 (42%), Gaps = 27/218 (12%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 E E + + V GIDEVGRGALAGPV V A + P G+ DSK +S K+RE Sbjct: 14 DTEFERQLASQ-YGTVIGIDEVGRGALAGPVGVGACVAGLGEPPLGLTDSKALSLKQREH 72 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV--------------------- 108 A +++ AS++ +D+ I A A A+ Sbjct: 73 FVSLAQEWAYPWAVTYASNREVDELGIITALRLAGIRALENIKEAGVVADVVLLDGSHDW 132 Query: 109 --ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 + +K D+ +AAAS++AKV RD+LM Sbjct: 133 LTPPQDLFSFDTAPLVERFQAVGAPPVVMKVKADASCSVVAAASVMAKVARDKLMEELPD 192 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 P YG+ + GY +A H++ I+ G S HR +++ + Sbjct: 193 --PGYGWAKNKGYGSAAHREAIRSLGVSQWHRTSWKLV 228 >gi|170781194|ref|YP_001709526.1| ribonuclease HII [Clavibacter michiganensis subsp. sepedonicus] gi|169155762|emb|CAQ00883.1| ribonuclease HII [Clavibacter michiganensis subsp. sepedonicus] Length = 219 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 73/204 (35%), Positives = 102/204 (50%), Gaps = 12/204 (5%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKK 67 P FE+E + V G DEVGRGALAGPV V AA+ D + P G+ DSK +S K+ Sbjct: 6 PTFEIEHELLGAGAALVIGCDEVGRGALAGPVAVGMAAVGPDADAFPVGLRDSKMLSEKR 65 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------- 117 RE L+ +++ A S + AS + +D I A A+ L + Sbjct: 66 REALHPLVSAWAGHSAVGMASAEEVDALGITACLGLAGRRALVELHHLGVPLLDSVVLLD 125 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 D + P +K D S+AAAS++AKV RDRLM H++ P+YG+ + Sbjct: 126 GSHDWLTPALVHPVPVRLRVKADRDCASVAAASVLAKVHRDRLMAAWHEESPEYGWAGNK 185 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201 GY + H VI+ G S IHR T+ Sbjct: 186 GYGSPAHLDVIRANGASRIHRRTW 209 >gi|238650442|ref|YP_002916294.1| ribonuclease HII [Rickettsia peacockii str. Rustic] gi|238624540|gb|ACR47246.1| ribonuclease HII [Rickettsia peacockii str. Rustic] Length = 188 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 88/189 (46%), Positives = 114/189 (60%), Gaps = 5/189 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E VAGIDE GRG LAGPVV + +I+D NI GI DSKK+S KKRE LYE Sbjct: 3 FEKKYHN---CIVAGIDEAGRGPLAGPVVASTVIVDNANIITGIKDSKKLSKKKRELLYE 59 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 +ITS+ + + + SH ID NI +AT A AV NL + P L+DG +D + Sbjct: 60 QITSNYVWATAIISHTEIDDINILEATKKACSIAVANLSLEPEIVLVDGNMQFKDE--RF 117 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 ++I GD++SLSIAAASI+AKVTRDRLM ++P Y + + GY +H + I G Sbjct: 118 VSIINGDNLSLSIAAASIVAKVTRDRLMLDLSAEFPQYLWHKNSGYGIKEHIEAINIHGL 177 Query: 194 SCIHRLTFR 202 S HR +FR Sbjct: 178 SPYHRRSFR 186 >gi|50955107|ref|YP_062395.1| ribonuclease HII [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951589|gb|AAT89290.1| ribonuclease HII [Leifsonia xyli subsp. xyli str. CTCB07] Length = 226 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 95/208 (45%), Gaps = 12/208 (5%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKI 63 P P E + + + + +DEVGRGALAGPV V +++D IP G+ DSK + Sbjct: 2 TPVTPSLRFEKALYRQGVTSIVAVDEVGRGALAGPVAVGMVVIDTAVKRIPLGLRDSKLL 61 Query: 64 SHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 S RE L ++ + AS +D+H I + A A L+ Sbjct: 62 SEPAREALEPACRRWSLFHAVGLASADEVDRHGIMRCLGLAGARAFAVLEEQGAPVHDSA 121 Query: 123 RSIPEDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + + + +K D S+AAAS+IAKV RDRLM P YG+ Sbjct: 122 LILDGNYDYLTLALTRPARVVTRVKADRDCASVAAASVIAKVHRDRLMIEHDADDPGYGW 181 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+ GY T H I E GPS IHRLT+ Sbjct: 182 ASNKGYSTPGHFAAIAELGPSAIHRLTW 209 >gi|313886392|ref|ZP_07820115.1| ribonuclease HII [Porphyromonas asaccharolytica PR426713P-I] gi|332300172|ref|YP_004442093.1| Ribonuclease H [Porphyromonas asaccharolytica DSM 20707] gi|312924168|gb|EFR34954.1| ribonuclease HII [Porphyromonas asaccharolytica PR426713P-I] gi|332177235|gb|AEE12925.1| Ribonuclease H [Porphyromonas asaccharolytica DSM 20707] Length = 204 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 2/181 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISS 85 G DE GRGALAG + AA++ + DSKK++ ++REEL I A ++ Sbjct: 15 CGCDEAGRGALAGDLYAAAVVWPDTLDHPHLRDSKKLTARQREELRLFIEEHATAWAVGV 74 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQAFAVIKGDSISL 144 A+ Q I + NI A++ A+ A+E L P LIDG P + ++KGD L Sbjct: 75 ATIQEIQQINILHASMLAMQRAIEALPCTPERLLIDGNYYDPRPDEVEYHTIVKGDDRYL 134 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AK RD M ++YP YG++ + GYPTA+H++ I++ G +HR F+ L Sbjct: 135 AIAAASILAKTHRDAYMTQQAQEYPHYGWEQNKGYPTAQHREGIRQYGSCPLHRQGFQLL 194 Query: 205 R 205 + Sbjct: 195 Q 195 >gi|148238709|ref|YP_001224096.1| ribonuclease HII [Synechococcus sp. WH 7803] gi|189043669|sp|A5GIN4|RNH2_SYNPW RecName: Full=Ribonuclease HII; Short=RNase HII gi|147847248|emb|CAK22799.1| Ribonuclease HII [Synechococcus sp. WH 7803] Length = 194 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 102/180 (56%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSAI-I 81 G+DEVGRG L GPV AA+ L D G+ DSK +S K+R +L I + A Sbjct: 3 VGVDEVGRGCLFGPVFAAAVSLTGAADAELTALGLTDSKALSAKRRADLVPHIQAKASAW 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ S + ID H I AT A+ A++ L + P L+DG P +++GDS Sbjct: 63 ALGQGSAREIDAHGIRVATELAMLRALQKLPIQPELVLVDGVLPLRLWPGAQRTIVRGDS 122 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS++AKV RD LM +++P+YGF+ H GY TA H+Q + GP+ +HR +F Sbjct: 123 QEASIAAASVLAKVARDGLMCRLAERFPEYGFERHAGYGTALHRQALITSGPTALHRKSF 182 >gi|145589618|ref|YP_001156215.1| ribonuclease H [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189043639|sp|A4SYT7|RNH2_POLSQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|145048024|gb|ABP34651.1| RNase HII [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 196 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 82/189 (43%), Positives = 111/189 (58%), Gaps = 4/189 (2%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI- 80 NM V G+DE GRG L G VV A++LDP N G+ DSKK+S +RE LYE+I A Sbjct: 2 NMIWVCGVDEAGRGPLVGAVVAGAVVLDPENPIEGLKDSKKLSAVRREFLYEQIMEKAKA 61 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGRSIPEDLPCQAFAVI 137 + AS ID NI +AT+ A+ AVE+L S + + +L A A++ Sbjct: 62 WGVGEASPTEIDSINILQATMLAMRRAVEDLAARLGEWPSKALIDGNRCPELSIAAEAIV 121 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD+ +I+AASI+AKVTRDR M H+++P YGF H+GYPT H +K+ G H Sbjct: 122 KGDTKEPAISAASIVAKVTRDRQMIALHEQHPQYGFSQHMGYPTEAHFAALKQYGVCTEH 181 Query: 198 RLTFRPLRN 206 R +F P+R Sbjct: 182 RKSFAPVRR 190 >gi|302522312|ref|ZP_07274654.1| ribonuclease HII [Streptomyces sp. SPB78] gi|302431207|gb|EFL03023.1| ribonuclease HII [Streptomyces sp. SPB78] Length = 233 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 71/197 (36%), Positives = 104/197 (52%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAGIDEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EAPTHSVERSLRATTGAKVVAGIDEVGRGAWAGPVSVCAAVTGLRRPPEGLTDSKLLTPK 63 Query: 67 KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L ++ + AS + ID+ + A A A++ L V P ++DG Sbjct: 64 RRAALVVELEQWVTAHSLGHASPEEIDELGMTAALRLAAGRALDGLPVRPDWVILDGNHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P VIKGD +S+AAAS++AKV RDRLM ++ D+ F ++ GY + H+ Sbjct: 124 YLGAPWNVRTVIKGDQSCVSVAAASVLAKVARDRLMAELGAQHEDFAFAANAGYHSPAHK 183 Query: 186 QVIKEKGPSCIHRLTFR 202 + E+GP+ HRL++ Sbjct: 184 TALAERGPTPYHRLSWS 200 >gi|257055033|ref|YP_003132865.1| RNase HII [Saccharomonospora viridis DSM 43017] gi|256584905|gb|ACU96038.1| RNase HII [Saccharomonospora viridis DSM 43017] Length = 275 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 77/194 (39%), Positives = 110/194 (56%), Gaps = 4/194 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68 + L+A + + + PV G+DE GRGA AGP+VVAA +L P + + DSK ++ R Sbjct: 16 SWALQAALDRRGLGPVVGVDEAGRGACAGPLVVAACVLRPGDGAKLPELADSKSLTPLAR 75 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + +YE+I A SI ID +H A ++ + AV L P L+DG +P Sbjct: 76 DRVYERILRRALDYSIVVIPPAEIDVQGVHTANIEGMRRAVAALSQRPGYVLLDGFRVP- 134 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 LP + V+KGD +AAAS++AKVTRDR+M H +YP YGF+ H GY T +H+ Sbjct: 135 GLPAPSVPVLKGDRAVACVAAASVLAKVTRDRIMVGLHAEYPVYGFEVHKGYTTVEHRTA 194 Query: 188 IKEKGPSCIHRLTF 201 + E GP HR +F Sbjct: 195 LAEHGPCEAHRWSF 208 >gi|310831397|ref|YP_003970040.1| putative ribonuclease HII [Cafeteria roenbergensis virus BV-PW1] gi|309386581|gb|ADO67441.1| putative ribonuclease HII [Cafeteria roenbergensis virus BV-PW1] Length = 202 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 10/191 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE GRG GPV A++ N + DSKK++ KKR LY I + I A Sbjct: 11 VGLDEAGRGCWWGPVTAGAVMWPENLTHPYLTDSKKLTEKKRNVLYTWILEKCLCGIGEA 70 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSA--------LIDGRSIPEDLPCQAFAVIK 138 + ID I +AT A+ A++NL+ + + +D P +++K Sbjct: 71 TSYEIDTIGILEATKLAMNRAIKNLEKNITMSSIKINNLIIDGINWKEKDFPYPITSIVK 130 Query: 139 GDSISLSIAAASIIAKVTRDRLMRI--AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 GD SIAAAS++AKV RD + Y D H GY T H++++ + GP+ Sbjct: 131 GDGKYYSIAAASVLAKVYRDNYCYKKALEDNFKTYLLDKHKGYGTKIHKEMLDKYGPTEE 190 Query: 197 HRLTFRPLRNL 207 HR +F+P+ N+ Sbjct: 191 HRHSFKPICNM 201 >gi|254424377|ref|ZP_05038095.1| ribonuclease HII [Synechococcus sp. PCC 7335] gi|196191866|gb|EDX86830.1| ribonuclease HII [Synechococcus sp. PCC 7335] Length = 199 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 72/181 (39%), Positives = 103/181 (56%), Gaps = 4/181 (2%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIISIS 84 +DEVGRGAL GPVV AA+I+ + I G+ DSK +S K+R +L +I S I Sbjct: 1 MDEVGRGALFGPVVAAAVIVPDSAIASLVSAGVTDSKALSAKRRTQLAVEIRSLTAFGIG 60 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ++ ID+ NI +A+L A+ A+ L +P LIDG DLP + +++GD L Sbjct: 61 LSTVYEIDRINILQASLLAMRRAIFQLPWMPDKCLIDGNQRIFDLPIEQETIVRGDQSVL 120 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +IAAASI+AKV RD L+ + YP Y S+ GY +A H+ I G HR +F+ Sbjct: 121 AIAAASILAKVWRDDLVSRLDRHYPGYDLVSNKGYGSANHRAGIARYGICRQHRQSFKGC 180 Query: 205 R 205 + Sbjct: 181 Q 181 >gi|194332870|ref|YP_002014730.1| ribonuclease HII [Prosthecochloris aestuarii DSM 271] gi|194310688|gb|ACF45083.1| Ribonuclease H [Prosthecochloris aestuarii DSM 271] Length = 206 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 81/194 (41%), Positives = 111/194 (57%), Gaps = 6/194 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKRE 69 E + V GIDE GRG LAGPVV AA++ + P G +NDSK I ++R+ Sbjct: 7 YEQQFWPD-LQRVCGIDEAGRGPLAGPVVAAAVVFPRHFRPHGFISTLNDSKTIPPRRRK 65 Query: 70 ELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 EL + I A +I+ H ID+ NI +AT+ A+ +A +L+ P LIDG Sbjct: 66 ELAQAIIQEAEDYAIAEVDHIEIDRINILQATMLAMNNAAGSLEHSPSLLLIDGNRFHPA 125 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 P ++KGD+ SIAAASI+AK RD +M A YP+YGF+ H GYPT +H + I Sbjct: 126 RPVAFRTIVKGDASVFSIAAASILAKTHRDAIMTEAALLYPEYGFEKHFGYPTREHIEAI 185 Query: 189 KEKGPSCIHRLTFR 202 + G S IHR++FR Sbjct: 186 RNHGRSPIHRMSFR 199 >gi|257063750|ref|YP_003143422.1| ribonuclease HII [Slackia heliotrinireducens DSM 20476] gi|256791403|gb|ACV22073.1| ribonuclease HII [Slackia heliotrinireducens DSM 20476] Length = 258 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 66/196 (33%), Positives = 92/196 (46%), Gaps = 6/196 (3%) Query: 12 FELEAMVREK----NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 LE+M G+DEVGRG +AGP+ VAA++L G+NDSK+++ Sbjct: 53 LRLESMYATASALAGGGLAMGLDEVGRGPVAGPLTVAAVVLPDAPRIEGLNDSKQVAPAA 112 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R + E I + A I ID + + A A+ + Sbjct: 113 RTRMAESIKACALAWDIEFIEPHDIDAYGMSACLRTAFGQAIAAIDEQLSGVAAVLLDGN 172 Query: 127 EDLPCQ-AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 +IKGD+ IAAASIIAKV RD LM K+YP YGFDS+ GY +A H Sbjct: 173 PLHIDPRERNIIKGDAKCAPIAAASIIAKVERDALMCEYAKEYPQYGFDSNKGYGSADHI 232 Query: 186 QVIKEKGPSCIHRLTF 201 + I+ G + +HR +F Sbjct: 233 EAIRTYGLTPVHRASF 248 >gi|325832929|ref|ZP_08165602.1| ribonuclease HII [Eggerthella sp. HGA1] gi|325485794|gb|EGC88258.1| ribonuclease HII [Eggerthella sp. HGA1] Length = 262 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 68/195 (34%), Positives = 100/195 (51%), Gaps = 7/195 (3%) Query: 12 FELEAMVR-EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 + E + E+ + G+DEVGRG LAGP+ V A++L G+NDSK++ + RE Sbjct: 60 YAFERALAAERGDGVIVGLDEVGRGPLAGPLAVGAVVLPSEPFIEGLNDSKQVKPEARER 119 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKAT----LDAIYHAVENLQVIPRSALIDGRSIP 126 + ++ + A+ A+ +E + V P L+DG + Sbjct: 120 IAVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEVGVRPDVVLLDGNPMR 179 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D + V+KGD SIAAASI+AKV RD LM ++YP+YGFD+ GY +A H + Sbjct: 180 LDE--REVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIE 237 Query: 187 VIKEKGPSCIHRLTF 201 IK G + IHR TF Sbjct: 238 AIKRYGLTPIHRATF 252 >gi|239928517|ref|ZP_04685470.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672] Length = 236 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 74/203 (36%), Positives = 112/203 (55%), Gaps = 3/203 (1%) Query: 3 CNSIP-ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 ++P E P +E +R +AG+DEVGRGA AGPV V A I P G+ DS Sbjct: 1 MGAMPYEPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDS 60 Query: 61 KKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 K ++ K+R EL E + S ++ AS + ID + A A A+E L V P + + Sbjct: 61 KLLTLKRRTELAETLRSWVTSYALGHASPEEIDVLGMTAALRLAAVRALEALPVRPDAVI 120 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +DG+ P + VIKGD +++AAAS+IAKV RD++M + D+GF + GY Sbjct: 121 LDGKHDYLGTPWKVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGVDHADFGFADNAGY 180 Query: 180 PTAKHQQVIKEKGPSCIHRLTFR 202 P+ H+ ++ +GP+ HRL++ Sbjct: 181 PSPVHRAALEVRGPTPHHRLSWA 203 >gi|257791157|ref|YP_003181763.1| Ribonuclease H [Eggerthella lenta DSM 2243] gi|257475054|gb|ACV55374.1| Ribonuclease H [Eggerthella lenta DSM 2243] Length = 262 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 68/195 (34%), Positives = 99/195 (50%), Gaps = 7/195 (3%) Query: 12 FELEAMVR-EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 + E + E+ + G+DEVGRG LAGP+ V A++L G+NDSK++ + RE Sbjct: 60 YAFERALAAERGDGVIVGLDEVGRGPLAGPLAVGAVVLPSEPFIEGLNDSKQVKPEARER 119 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKAT----LDAIYHAVENLQVIPRSALIDGRSIP 126 + ++ + A+ A+ +E V P L+DG + Sbjct: 120 IAVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEAGVRPDVVLLDGNPMR 179 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D + V+KGD SIAAASI+AKV RD LM ++YP+YGFD+ GY +A H + Sbjct: 180 LDE--REVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIE 237 Query: 187 VIKEKGPSCIHRLTF 201 IK G + IHR TF Sbjct: 238 AIKRYGLTPIHRATF 252 >gi|284008506|emb|CBA75018.1| ribonuclease HII [Arsenophonus nasoniae] Length = 174 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 74/167 (44%), Positives = 98/167 (58%), Gaps = 2/167 (1%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKA 99 +V AA+ILDP G+ DSKK++ K+R L +I A SI A + IDK NI +A Sbjct: 1 MVTAAVILDPKQPIIGLADSKKLTEKRRNALCIEILDKALCWSIGRAEPEEIDKINILQA 60 Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 T A+ AV L P L+DG P P + A+IKGDS+ I+AASI+AKVTRDR Sbjct: 61 TFLAMRRAVAGLTTRPDIVLVDGNKSP-GFPVPSQAIIKGDSLVQEISAASILAKVTRDR 119 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 MR +P+YGF H GYPTA H + + + G + HR +F P+R Sbjct: 120 EMRELDILFPEYGFAQHKGYPTAFHLEKLAQHGATQFHRKSFAPVRR 166 >gi|303232810|ref|ZP_07319495.1| ribonuclease HII [Atopobium vaginae PB189-T1-4] gi|302481296|gb|EFL44371.1| ribonuclease HII [Atopobium vaginae PB189-T1-4] Length = 271 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 68/177 (38%), Positives = 100/177 (56%), Gaps = 3/177 (1%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISIS 84 V G+DEVGRG LAGP+ V A++L+ +G+NDSK++S + R EL +I A +++ Sbjct: 91 VIGVDEVGRGPLAGPLSVGAVVLNDEPCIWGLNDSKQLSSRTRSELAARIRKEARAVAVV 150 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 ID+ I A +A+ A+E + + P + LIDG + ++KGD Sbjct: 151 HIPPAVIDEKGISCALKEAMRTAIERIDIAPTAVLIDGNPVHVHPL--EQTIVKGDCKIA 208 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +IAAASI+AKV RD M +YP Y F + GY +++H IK G S IHR +F Sbjct: 209 AIAAASIVAKVERDAYMSSISDQYPQYHFAQNKGYGSSEHIHAIKTYGLSAIHRKSF 265 >gi|222823127|ref|YP_002574700.1| ribonuclease HII [Campylobacter lari RM2100] gi|222538348|gb|ACM63449.1| ribonuclease HII [Campylobacter lari RM2100] Length = 183 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 91/175 (52%), Gaps = 6/175 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE GRGALAG + + A L N G+ DSKK+S KKREELYE+I S++ I + Sbjct: 4 VGVDEAGRGALAGDMHIGACKLLKN--IDGLADSKKLSAKKREELYEQILSNSNFLILAF 61 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 S ID + + A ++ ++ I ++K D + Sbjct: 62 SPLQIDTLGLSQCLQLA----LKIIKKHFSQDEILYDGNLNYGILDIKTMVKADMKVQEV 117 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +AASI+AKV+RD+ MR K Y +Y FD H GY T H + IK G S +HR +F Sbjct: 118 SAASILAKVSRDQKMRYFSKIYSNYDFDKHKGYGTKAHIEKIKAFGYSPLHRKSF 172 >gi|295396057|ref|ZP_06806241.1| ribonuclease HII [Brevibacterium mcbrellneri ATCC 49030] gi|294971145|gb|EFG47036.1| ribonuclease HII [Brevibacterium mcbrellneri ATCC 49030] Length = 231 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 18/206 (8%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKRE 69 E + + + V G+DEVGRG +AGPV V A+ D P G+ DSKK++ + R Sbjct: 23 ERALLDAGVTSVVGMDEVGRGCVAGPVGVGAVWCDLEALCAGGFPAGLRDSKKLTPRPRS 82 Query: 70 ELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI--- 125 E++ + ++ AS Q ID I A A A+ L L + Sbjct: 83 LAAERVRATWEHAVVAYASPQEIDAMGISAALSLAGRRALAQLPAADLVMLDGKFNWLGT 142 Query: 126 ---------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + GD + IAAAS+IAKV RD +M +++ YG+ S+ Sbjct: 143 DPGLLGGDVSHVEVPPVRMYVGGDDQRIPIAAASLIAKVDRDAVMSSLDREHHGYGWASN 202 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFR 202 VGYP+ H+Q I + G + HR +FR Sbjct: 203 VGYPSPAHKQAIADLGVTPWHRKSFR 228 >gi|297202855|ref|ZP_06920252.1| ribonuclease HII [Streptomyces sviceus ATCC 29083] gi|197717340|gb|EDY61374.1| ribonuclease HII [Streptomyces sviceus ATCC 29083] Length = 233 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 72/197 (36%), Positives = 111/197 (56%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A + P G+ DSK +S K Sbjct: 4 EPPTHTVERSLRATTGAKIIAGVDEVGRGAWAGPVTVCAAVTGLRRPPQGLTDSKLLSVK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL E++ + ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTELAEELRTWVTSYALGHASPEEIDHMGMTAALRIAAVRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M + D+GF ++ GYP+ H+ Sbjct: 124 YLGTPWKVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGIDHADFGFAANAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFR 202 ++ +GP+ HRL++ Sbjct: 184 AALEVRGPTPYHRLSWA 200 >gi|325963707|ref|YP_004241613.1| ribonuclease HII [Arthrobacter phenanthrenivorans Sphe3] gi|323469794|gb|ADX73479.1| ribonuclease HII [Arthrobacter phenanthrenivorans Sphe3] Length = 248 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 22/215 (10%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKK 67 P E + + + +AG+DEVGRGALAGPV V A + L+ G+ DSK ++ + Sbjct: 8 PTLRHERTFKAQGIRYLAGVDEVGRGALAGPVSVGIAVVDLEHQKPLAGVRDSKLLTPSE 67 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDGR 123 RE L + ++ S + AS Q ID I A + + + P + L+DG Sbjct: 68 RERLEPLVRRWSVASAVGHASAQEIDSIGIIAALRLAGTRAWQDILAAGIRPEAVLLDGS 127 Query: 124 SIP----------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 +K D LS+AAAS+IAKV RDR MR H + Sbjct: 128 HNWLSPAGQPSLFDEPVFEASCDAPVHTKVKADMQCLSVAAASVIAKVERDRTMRELHAE 187 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +PD+G+D + GY T H+ V++ GP+ HR+++R Sbjct: 188 FPDFGWDINKGYATVLHRDVLRAAGPTPYHRVSWR 222 >gi|328955473|ref|YP_004372806.1| RNase HII [Coriobacterium glomerans PW2] gi|328455797|gb|AEB06991.1| RNase HII [Coriobacterium glomerans PW2] Length = 262 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 72/189 (38%), Positives = 103/189 (54%), Gaps = 3/189 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 E R V G+DEVGRG++AGP+ V A+ L P I +G+NDSK++S KR++L Sbjct: 65 YEMQTRLGGRGVVIGVDEVGRGSVAGPLTVCAVCLPPTPIIWGVNDSKRLSAAKRQKLAA 124 Query: 74 KITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 +I A I I ID+ + A A+ AV + + P L+DG P + Sbjct: 125 RIERIARAIGICHIPACDIDRCGMGAALRHAVRLAVADCGLEPDCVLMDGN--PLGAVER 182 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 V+ GD++ SIAAASI+AKVTRD LM YP Y + GY + +H + I+E+G Sbjct: 183 ERCVVHGDALVASIAAASIVAKVTRDDLMIELDSTYPGYHLAASKGYASPEHIEAIRERG 242 Query: 193 PSCIHRLTF 201 + HR +F Sbjct: 243 LTPEHRASF 251 >gi|189345575|ref|YP_001942104.1| ribonuclease HII [Chlorobium limicola DSM 245] gi|189339722|gb|ACD89125.1| Ribonuclease H [Chlorobium limicola DSM 245] Length = 299 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 78/202 (38%), Positives = 110/202 (54%), Gaps = 8/202 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKK 67 + E N + GIDE GRG LAGPVV AA++ P +NDSKK+S Sbjct: 98 DYEYPFWR-NTELLCGIDEAGRGPLAGPVVAAAVVFPRWFTPETDRLSLLNDSKKLSPGL 156 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R EL I ++A + + + ID+ NI AT+ A+ +AV +L P L+DG Sbjct: 157 RTELASSIKAAALHWATALIEPETIDRINIFHATMLAMNNAVTSLSETPELLLVDGNRFR 216 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++KGD+ SIAAAS++AK RD +M+ YP YGF+ H GYPT +H + Sbjct: 217 PLLPIPYETIVKGDAKVFSIAAASVLAKTCRDTIMKEYALLYPQYGFEHHFGYPTGEHIR 276 Query: 187 VIKEKGPSCIHRLTFRPLRNLS 208 + + G S IHR +F+ L+ L Sbjct: 277 AVAQYGRSPIHRKSFK-LKQLG 297 >gi|148272555|ref|YP_001222116.1| ribonuclease HII [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830485|emb|CAN01420.1| rnhB [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 219 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 97/204 (47%), Gaps = 12/204 (5%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKK 67 P +LE + V G DEVGRGALAGPV V ++ P+ P G+ DSK +S K+ Sbjct: 6 PTLDLEHELLHAGAALVIGCDEVGRGALAGPVAVGMAVVGPDAVGFPPGLRDSKMLSEKR 65 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS--------- 117 RE L+ + S + AS +D+ I A A+ L Sbjct: 66 REALHPVVAGWVRHSAVGMASAAEVDELGITACLGLAGRRALVELHHAGVPLLDSVVLLD 125 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 D + P +K D S+AAAS++AKV RDR+M + H+ P+YG+ + Sbjct: 126 GAHDWLTPHLAHPVPVRLRVKADRDCASVAAASVLAKVERDRMMAVWHEDLPEYGWAGNK 185 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201 GY +A H I+ +G S +HR T+ Sbjct: 186 GYGSAAHLDAIRARGASPLHRRTW 209 >gi|313141283|ref|ZP_07803476.1| ribonuclease [Helicobacter canadensis MIT 98-5491] gi|313130314|gb|EFR47931.1| ribonuclease [Helicobacter canadensis MIT 98-5491] Length = 194 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 7/179 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKISHKKREELYEKITSSAIIS 82 + GIDE GRG + G + V +IL + + DSKK+S K R+ L +I A Sbjct: 7 ICGIDEAGRGCIGGSLFVCGVILGKSFPQSLLSQLQDSKKLSPKVRDTLAPQIKQYAQFH 66 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + Q ID + +A+ + L+ + + +IKGDS Sbjct: 67 LVKKTAQEIDLKGLSLCLKEALQEILTYLKSAHYLFDGNCNFKIQS----LQTLIKGDSK 122 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+AASI+AK +D+ YP YGF SH GY T H + I + G HR ++ Sbjct: 123 VYAISAASILAKNAKDKESMELDLIYPQYGFKSHKGYGTKAHIEAISKFGYCKEHRKSY 181 >gi|224417741|ref|ZP_03655747.1| ribonuclease HII RNase HII [Helicobacter canadensis MIT 98-5491] gi|253827085|ref|ZP_04869970.1| ribonuclease HII [Helicobacter canadensis MIT 98-5491] gi|253510491|gb|EES89150.1| ribonuclease HII [Helicobacter canadensis MIT 98-5491] Length = 204 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 7/179 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI---PFGINDSKKISHKKREELYEKITSSAIIS 82 + GIDE GRG + G + V +IL + + DSKK+S K R+ L +I A Sbjct: 17 ICGIDEAGRGCIGGSLFVCGVILGKSFPQSLLSQLQDSKKLSPKVRDTLAPQIKQYAQFH 76 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + Q ID + +A+ + L+ + + +IKGDS Sbjct: 77 LVKKTAQEIDLKGLSLCLKEALQEILTYLKSAHYLFDGNCNFKIQS----LQTLIKGDSK 132 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +I+AASI+AK +D+ YP YGF SH GY T H + I + G HR ++ Sbjct: 133 VYAISAASILAKNAKDKESMELDLIYPQYGFKSHKGYGTKAHIEAISKFGYCKEHRKSY 191 >gi|328794509|ref|XP_003252082.1| PREDICTED: ribonuclease HII-like, partial [Apis mellifera] Length = 169 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 81/168 (48%), Positives = 100/168 (59%), Gaps = 2/168 (1%) Query: 42 VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKAT 100 V AA+ILDPNN G+ DSKK+S KKRE L+E I A +I+ AS ID+ NI AT Sbjct: 1 VTAAVILDPNNPIEGLADSKKLSEKKREYLFEVIKEKALAWNIARASVSEIDQLNILHAT 60 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + A+ AV L + P L+DG P D A AV+KGDS+ I AASI+AKVTRDR Sbjct: 61 MLAMQRAVAGLSIKPNLVLVDGNRAP-DFGIAAQAVVKGDSLVQEIGAASILAKVTRDRE 119 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLS 208 M K YP YG H GYPT H I E G + I+R +F P++ L Sbjct: 120 MAELDKIYPQYGLSKHKGYPTQAHLAAIIEHGVNDIYRKSFAPVKRLL 167 >gi|317488112|ref|ZP_07946688.1| ribonuclease HII [Eggerthella sp. 1_3_56FAA] gi|316912784|gb|EFV34317.1| ribonuclease HII [Eggerthella sp. 1_3_56FAA] Length = 262 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 7/195 (3%) Query: 12 FELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 + E + + + G+DEVGRG LAGP+ V A++L G+NDSK++ + RE Sbjct: 60 YAFERALAAGRGDGVIVGLDEVGRGPLAGPLAVGAVVLPAEPFIEGLNDSKQVKPEVRER 119 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKAT----LDAIYHAVENLQVIPRSALIDGRSIP 126 + ++ + A+ A+ +E V P L+DG + Sbjct: 120 IAVQVKAVAVAWTVEYVEASDIDACGMTASLALAFRRAIRRIEEAGVRPDVVLLDGNPMR 179 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 D + V+KGD SIAAASI+AKV RD LM ++YP+YGFD+ GY +A H + Sbjct: 180 LDE--REVNVVKGDGKCASIAAASIVAKVERDALMCRYAEEYPEYGFDACKGYASAAHIE 237 Query: 187 VIKEKGPSCIHRLTF 201 IK G + IHR TF Sbjct: 238 AIKRYGLTPIHRATF 252 >gi|256832223|ref|YP_003160950.1| Ribonuclease H [Jonesia denitrificans DSM 20603] gi|256685754|gb|ACV08647.1| Ribonuclease H [Jonesia denitrificans DSM 20603] Length = 303 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 26/218 (11%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKR 68 E + ++ VAG+DEVGRGALAGPV V ++DP P G+ DSK++SH+ R Sbjct: 72 DLTHERSLFDRGARLVAGVDEVGRGALAGPVAVGVCVVDPTTQLPPVGLTDSKELSHEAR 131 Query: 69 EELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVI------------- 114 L I A+ S + A+ + ID+ I A A A+ + Sbjct: 132 ALLVPMIQGWAVASAVGLATPEEIDECGIVGALRLAGQRALGEIMQRLGPVDTVLLDGSH 191 Query: 115 ----------PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 + D ++I + +K D S+A ASI+AK RD +MR Sbjct: 192 NWLSEPVQDLFDAVTSDQQTIDGYEEPRVVTRVKADLACASVAGASILAKEHRDAIMREL 251 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +P YG+ ++ GY ++ H + +GP+ HR+++R Sbjct: 252 DHDFPHYGWVTNKGYASSGHTYALTTRGPTPHHRMSWR 289 >gi|208435220|ref|YP_002266886.1| ribonuclease HII [Helicobacter pylori G27] gi|238056779|sp|B5Z8X1|RNH2_HELPG RecName: Full=Ribonuclease HII; Short=RNase HII gi|208433149|gb|ACI28020.1| ribonuclease HII [Helicobacter pylori G27] Length = 204 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 63/190 (33%), Positives = 91/190 (47%), Gaps = 9/190 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS-- 78 + GIDE GRG LAG + VA + D + G+ DSKK+S KKR L +KI + Sbjct: 1 MILGIDEAGRGCLAGSLFVAGVACDDQTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGE 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAV 136 + S ID + A+ +EN + IDG + + Sbjct: 61 VGFFVVKKSANEIDSLGLGACLKLAVQEILENGCSLANEIKIDGNTAFGLNKRYPNIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAISKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|206896037|ref|YP_002247054.1| ribonuclease HII [Coprothermobacter proteolyticus DSM 5265] gi|206738654|gb|ACI17732.1| ribonuclease HII [Coprothermobacter proteolyticus DSM 5265] Length = 202 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 4/192 (2%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKRE 69 P +ELE + K PV G+DEVGRGA+AGP++V A+ ++ DSK++S +R+ Sbjct: 5 PSWELEKGLFGK---PVVGVDEVGRGAVAGPLLVCAVRF-HSSPEVKWRDSKQMSPLQRK 60 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 ++ I S+ I A+ ID+ I A A+ + + + DG+ Sbjct: 61 SVFANIVESSCFGIGLAAPWDIDRFGISFCLKQAAEEALAEIPLDDAIVVFDGKRPLTTE 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++KGD + S+AAAS++AKV RD LM P Y F +H GY T H + I+ Sbjct: 121 VPDYQCMVKGDVLLPSVAAASVVAKVIRDELMVCLDSLLPGYEFSAHKGYGTKTHLEAIR 180 Query: 190 EKGPSCIHRLTF 201 G + HR +F Sbjct: 181 CFGITAQHRRSF 192 >gi|116072124|ref|ZP_01469392.1| Ribonuclease H [Synechococcus sp. BL107] gi|116065747|gb|EAU71505.1| Ribonuclease H [Synechococcus sp. BL107] Length = 199 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 99/181 (54%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSA-I 80 VAG+DEVGRG L GPV AA++LD G+ DSKK+S K+R L I Sbjct: 13 VAGVDEVGRGCLFGPVFAAAVVLDQVAEQRLWQAGLTDSKKLSAKRRGSLVPLIEQHCLT 72 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + AS ID I +AT A+ A++ L+ P L+DG ++ GD Sbjct: 73 SGLGQASAHEIDAVGIRRATERAMLRALQKLEHSPNVVLVDGNLPLRLWSGPQKTLVGGD 132 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S S +IAAAS++AK +RD L+R ++P YG + H GY TA H++ + GP+ +HR + Sbjct: 133 SRSAAIAAASVLAKESRDALIRRLSNRFPGYGLERHAGYGTALHREALLALGPTSMHRRS 192 Query: 201 F 201 F Sbjct: 193 F 193 >gi|310286901|ref|YP_003938159.1| Ribonuclease HII [Bifidobacterium bifidum S17] gi|311063802|ref|YP_003970527.1| ribonuclease HII RnhB [Bifidobacterium bifidum PRL2010] gi|309250837|gb|ADO52585.1| Ribonuclease HII [Bifidobacterium bifidum S17] gi|310866121|gb|ADP35490.1| RnhB Ribonuclease HII [Bifidobacterium bifidum PRL2010] Length = 233 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 32/229 (13%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGIND 59 ++ E P ++E + + V G DEVGRGALAGPV+V A L +P G+ D Sbjct: 2 AMIEHPTLDMERQLAAQGCDVVIGCDEVGRGALAGPVMVGAAAMWSRDLAAAQVPAGVAD 61 Query: 60 SKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SK ++ +RE + +++ A ++ AS+ ID+ I A A A+ +++ Sbjct: 62 SKLLTEHRREGIVDELRSWCAAYAVGQASNAEIDEWGISHALGIAALRALNDVERQLGMD 121 Query: 119 LIDGRSIPED-----------------------LPCQAFAVIKGDSISLSIAAASIIAKV 155 G D +P Q +KGD +++ A++IAKV Sbjct: 122 GPAGSGRRVDVILDGPNDYITKTMNTFDAPALPIPVQVSCKVKGDRHCATVSCAAVIAKV 181 Query: 156 TRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 TRD LM + +Y YG+ + GY +A H+ I G + +HR+T+ Sbjct: 182 TRDHLMVDIAQGNPRYAPYGWAHNKGYGSAAHRDAIARLGVTPLHRVTW 230 >gi|294631838|ref|ZP_06710398.1| ribonuclease HII [Streptomyces sp. e14] gi|292835171|gb|EFF93520.1| ribonuclease HII [Streptomyces sp. e14] Length = 233 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 71/197 (36%), Positives = 111/197 (56%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAVTGLRRPPVGLTDSKLLTVK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL ++ ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRNELDAELRKWVTAYALGHASPEEIDDLGMTAALRLAASRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M ++ D+GF ++ GYP+ H+ Sbjct: 124 YLGAPWKVRTVIKGDRSCVAVAAASVIAKVHRDKMMAELGSEHADFGFAANAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFR 202 ++E+GP+ HRL++ Sbjct: 184 AALEERGPTPYHRLSWA 200 >gi|15612308|ref|NP_223961.1| ribonuclease HII [Helicobacter pylori J99] gi|7227933|sp|Q9ZJR1|RNH2_HELPJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|4155855|gb|AAD06828.1| RIBONUCLEASE HII [Helicobacter pylori J99] Length = 209 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + Sbjct: 9 GIDEAGRGCLAGSLFVAGVVCNEKIALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEVGF 68 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + AI VEN + IDG + +IKG Sbjct: 69 FVVKKSANEIDHLGLGACLKLAIEEIVENGCSLANEIKIDGNTAFGLNKRYPNIQTIIKG 128 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK ++DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 129 DETIAQIAMASVLAKASKDREMLELHALFKEYGWDKNCGYGTKQHIEAINKLGATPFHRH 188 Query: 200 TFRPLRN 206 +F L+N Sbjct: 189 SF-TLKN 194 >gi|312194955|ref|YP_004015016.1| ribonuclease H [Frankia sp. EuI1c] gi|311226291|gb|ADP79146.1| Ribonuclease H [Frankia sp. EuI1c] Length = 240 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 98/200 (49%), Gaps = 2/200 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 F E + + + PVAG+DE GRGA AGP+VVAA+ILDP + DSK ++ + RE Sbjct: 15 FGYERALARRGLGPVAGVDEAGRGACAGPLVVAAVILDPRRTGRLAELADSKLLTERIRE 74 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +YE + + A + I ++ + Sbjct: 75 RVYEDVLAVASAWSVVVIPAAEIDRHGLHVMNITGMRRAVARLAIHPGYVLVDGFPVPGI 134 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + AV KGD ++ +AAAS++AKVTRDR+M ++Y +Y F H GY TA H + Sbjct: 135 DTPSLAVRKGDRVAACVAAASVVAKVTRDRIMCQLDERYGEYDFAQHKGYVTAAHAAALA 194 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 GP HRL++ +++L V Sbjct: 195 RHGPCEEHRLSYANVQSLIV 214 >gi|217032077|ref|ZP_03437577.1| hypothetical protein HPB128_16g37 [Helicobacter pylori B128] gi|298735652|ref|YP_003728177.1| ribonuclease HII [Helicobacter pylori B8] gi|216946225|gb|EEC24833.1| hypothetical protein HPB128_16g37 [Helicobacter pylori B128] gi|298354841|emb|CBI65713.1| ribonuclease HII [Helicobacter pylori B8] Length = 204 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 92/190 (48%), Gaps = 9/190 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS-- 78 V GIDE GRG LAG + VA + D + G+ DSKK+S KKR L +KI + Sbjct: 1 MVLGIDEAGRGCLAGSLFVAGVACDEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGE 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAV 136 + S ID + +I +EN + IDG + + Sbjct: 61 VGFFVVKKSANEIDSLGLGACLRLSIEEILENGCSLANEIKIDGNTAFGLNKRYPHIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK ++DR MR H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDEKIAQIAMASVLAKASKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRRSF-TLKN 189 >gi|308185075|ref|YP_003929208.1| ribonuclease HII [Helicobacter pylori SJM180] gi|308060995|gb|ADO02891.1| ribonuclease HII [Helicobacter pylori SJM180] Length = 204 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 9/190 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS-- 78 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + Sbjct: 1 MILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGE 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAV 136 + S + ID + AI +EN + IDG + + + Sbjct: 61 VGFFVVKKSAEAIDSLGLGACLKLAIQEILENGCSLANEIKIDGNTAFGLDKRYPNIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDETIAQIAMASVLAKTAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|39932425|sp|Q8NNZ4|RNH2_CORGL RecName: Full=Ribonuclease HII; Short=RNase HII gi|21324803|dbj|BAB99426.1| Ribonuclease HII [Corynebacterium glutamicum ATCC 13032] Length = 209 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 68/190 (35%), Positives = 92/190 (48%), Gaps = 4/190 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITS 77 + PVAG+DE GRGA GP+ +AA IL P + DSKK+S RE+L I Sbjct: 3 RNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKKLSASTREKLMPLIKK 62 Query: 78 SA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A S+ S Q ID+ I A + + AV L P L D +P + Sbjct: 63 HALAWSVIVISAQDIDRFGIQHANISGMRRAVAALGTQPGYVLTDAMKVP-GFTVPYLPI 121 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I GD+ + IAAAS++AK TRD +M YP YG + H GY T H ++ G S Sbjct: 122 IGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRHHGASPE 181 Query: 197 HRLTFRPLRN 206 HR ++ + Sbjct: 182 HRYSYANVAK 191 >gi|261337969|ref|ZP_05965853.1| ribonuclease HII [Bifidobacterium gallicum DSM 20093] gi|270277466|gb|EFA23320.1| ribonuclease HII [Bifidobacterium gallicum DSM 20093] Length = 243 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 43/236 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKKIS 64 P + E + ++ + G DEVGRGALAGPV+V A L ++P + DSK ++ Sbjct: 6 PTLDREQELADQGFDLIVGFDEVGRGALAGPVMVGAAAIWAADLPQLHVPDHVADSKMLT 65 Query: 65 HKKREELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVEN------------- 110 ++RE +YE + SA ++ AS+Q ID I A A A+ Sbjct: 66 ERRREAIYEDLEAWSAAWAVGQASNQEIDDWGISHALGIAALRALAQLEHHLGIGIASNQ 125 Query: 111 --------------------LQVIPRSALIDGRSIPEDLPCQAF--AVIKGDSISLSIAA 148 G D+P A +KGD ++A+ Sbjct: 126 TSISSEATTTLRTPRIGAILDGPHDYITKALGTFEAPDVPINAHVVTQVKGDQHCATVAS 185 Query: 149 ASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 A++IAKVTRD LM + +Y YG+ S+ GY H+Q I + G +HRL+++ Sbjct: 186 AAVIAKVTRDHLMIELAERPEYAPYGWASNKGYGAKAHRQAIVDHGLCDLHRLSWK 241 >gi|123966915|ref|YP_001011996.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9515] gi|166226637|sp|A2BYM8|RNH2_PROM5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|123201281|gb|ABM72889.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9515] Length = 209 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 76/200 (38%), Positives = 107/200 (53%), Gaps = 7/200 (3%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREE 70 E ++ N GIDEVGRGA+ GPV AA++L N G+ DSKK++ KKR+ Sbjct: 11 EDHLQVLNKQLEIGIDEVGRGAVFGPVFSAAVVLTEKNGYTLKQLGVTDSKKLTEKKRKL 70 Query: 71 LYEKITS-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L KI S S+ S+ +S + ID+ I AT ++ A++ L+ P +IDG Sbjct: 71 LLPKIISLSSDYSLGQSSAREIDQLGIRYATELSMIRAIKKLKSKPYEVIIDGPLSLRLW 130 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 +I GDS SIAAASI+AKVTRD LM KK+ Y + GY T +H +K Sbjct: 131 KSHQRNIIAGDSKFTSIAAASIVAKVTRDFLMERLEKKFSGYFIFKNKGYGTKEHLLSLK 190 Query: 190 EKGPSCIHRLTFRPLRNLSV 209 G + +HR +F L++ Sbjct: 191 ANGVTNLHRKSFLT--KLNL 208 >gi|283782847|ref|YP_003373601.1| ribonuclease HII [Gardnerella vaginalis 409-05] gi|298253324|ref|ZP_06977116.1| ribonuclease HII [Gardnerella vaginalis 5-1] gi|283442005|gb|ADB14471.1| ribonuclease HII [Gardnerella vaginalis 409-05] gi|297532719|gb|EFH71605.1| ribonuclease HII [Gardnerella vaginalis 5-1] Length = 247 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 112/240 (46%), Gaps = 42/240 (17%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII----LDPNNIPFGIN 58 ++IP P F+ E + + V G+DEVGRG+LAGPV+V AA+I + N +P G+ Sbjct: 6 SNIPLVPSFKYEQDLLCEGYDWVIGLDEVGRGSLAGPVMVGAAVIGIKQVKENYMPEGLA 65 Query: 59 DSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKA------------------ 99 DSK +S K+REELYE + ++ S ++ ID+ I A Sbjct: 66 DSKLLSEKRREELYEPLQKWCTTWAVGSCTNTEIDEWGISYALGVAALKAISKVEEDIKK 125 Query: 100 ----------------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + I ++ + P + ++K D Sbjct: 126 LSFSVNANTRENTRENSNFRIAAILDGPCDYIDKVANTFDAPYIPEPVKVHTLVKADRQC 185 Query: 144 LSIAAASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S+AAA+++AKVTRD LM K KY Y + S+ GY + H+ IK+ GPS +HRL++ Sbjct: 186 ASVAAAAVLAKVTRDNLMVSLAKNPKYAAYDWASNKGYGSLAHRNAIKKVGPSDLHRLSW 245 >gi|224282458|ref|ZP_03645780.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171] gi|313139607|ref|ZP_07801800.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171] gi|313132117|gb|EFR49734.1| ribonuclease HII [Bifidobacterium bifidum NCIMB 41171] Length = 233 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 32/229 (13%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNNIPFGIND 59 ++ E P ++E + + V G DEVGRGALAGPV+V A L +P G+ D Sbjct: 2 AMIEHPTLDMERQLAAQGCDVVIGCDEVGRGALAGPVMVGAAAMWSRDLAAAQVPAGVAD 61 Query: 60 SKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SK ++ +RE + +++ A ++ AS+ ID+ I A A A+ +++ Sbjct: 62 SKLLTEHRREGIVDELRSWCAAYAVGQASNAEIDEWGISHALGIAALRALNDVERQLGMD 121 Query: 119 LIDGRSIPED-----------------------LPCQAFAVIKGDSISLSIAAASIIAKV 155 G D +P Q +KGD +++ A++IAKV Sbjct: 122 GPAGSGRRVDVILDGPNDYITKTMNTFDAPALPIPVQVSCKVKGDRHCAAVSCAAVIAKV 181 Query: 156 TRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 TRD LM + +Y YG+ + GY +A H+ I G + +HR+T+ Sbjct: 182 TRDHLMVDIAQGNPRYAPYGWAHNKGYGSAAHRDAIARLGVTPLHRVTW 230 >gi|257068188|ref|YP_003154443.1| ribonuclease HII [Brachybacterium faecium DSM 4810] gi|256559006|gb|ACU84853.1| ribonuclease HII [Brachybacterium faecium DSM 4810] Length = 272 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 17/210 (8%) Query: 10 PHFELEAMV---REKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSK 61 P ++E + R + G+DEVGRGALAGPV V A ++ +P G+ DSK Sbjct: 6 PTLQVEQSLAVGRGPGRRIIVGVDEVGRGALAGPVAVGACAVEVVGGLAAPLPEGVRDSK 65 Query: 62 KISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 K++ ++RE L E I S + + AS ID+ I A A A++ L V + ++ Sbjct: 66 KLTARRREALVEPILGSVLAGAVGWASPAEIDEIGIMPALTTAALRALDLLGVAADAIVL 125 Query: 121 DGRSIPEDLPCQ--------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 DG + D S+AAASI+AKV RD M + P+Y Sbjct: 126 DGDVDVLTPALTAPGRPTPLVHLQVSADRDCASVAAASILAKVARDARMVELDAEAPEYC 185 Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + S+ GY + H++ I G HR ++R Sbjct: 186 WASNKGYGSKPHREAIDRFGVHAHHRRSWR 215 >gi|291436842|ref|ZP_06576232.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672] gi|291339737|gb|EFE66693.1| ribonuclease HII [Streptomyces ghanaensis ATCC 14672] Length = 233 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 73/197 (37%), Positives = 109/197 (55%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A I P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTLK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL E + S ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTELAETLRSWVTSYALGHASPEEIDVLGMTAALRLAAVRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M + D+GF + GYP+ H+ Sbjct: 124 YLGTPWKVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGVDHADFGFADNAGYPSPVHR 183 Query: 186 QVIKEKGPSCIHRLTFR 202 ++ +GP+ HRL++ Sbjct: 184 AALEVRGPTPHHRLSWA 200 >gi|239982734|ref|ZP_04705258.1| ribonuclease HII [Streptomyces albus J1074] gi|291454583|ref|ZP_06593973.1| ribonuclease HII [Streptomyces albus J1074] gi|291357532|gb|EFE84434.1| ribonuclease HII [Streptomyces albus J1074] Length = 233 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 69/197 (35%), Positives = 103/197 (52%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 ESPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVSVCAAVTGLRRAPEGLTDSKLLAPK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L ++ + +S + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTALAGELEGWVTAYAFGHSSPEEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD + +AAAS++AKV RD +M + D+ F + GYP+ HQ Sbjct: 124 YLGAPWKVRTVIKGDQSCVCVAAASVLAKVRRDAMMAELGVGHEDFCFADNAGYPSPAHQ 183 Query: 186 QVIKEKGPSCIHRLTFR 202 + E+GP+ HRL++ Sbjct: 184 AALAERGPTPYHRLSWA 200 >gi|317014714|gb|ADU82150.1| ribonuclease HII [Helicobacter pylori Gambia94/24] Length = 201 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 65/190 (34%), Positives = 93/190 (48%), Gaps = 9/190 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCNEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHDEVGF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S IDK + AI VEN + IDG + +IKG Sbjct: 64 FVVKKSANEIDKLGLGACLKLAIQEIVENGCSLADEIKIDGNTAFGLNKRYPHIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 124 DEKVAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRH 183 Query: 200 TFRPLRNLSV 209 +F L+N S+ Sbjct: 184 SF-TLKNRSL 192 >gi|118475400|ref|YP_891226.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40] gi|118414626|gb|ABK83046.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40] Length = 189 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 8/180 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRGALAG +VVA + P I G++DSKK++ +KREE++ + + Sbjct: 4 ICGIDEAGRGALAGELVVAGCVFKPKFKKEIIKLGLSDSKKLTEQKREEIFLNLEKMSDY 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + + +DK + A+ + + + ++K DS Sbjct: 64 LVVYFRNTIVDKIGLSDCLRRALNVIKMHFNECNFIYDGN----CDYGVKNIKTIVKADS 119 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++AASIIAKV+RDR MR K YPD+G+ H GY H + +K+ G + + RL+F Sbjct: 120 SVPQVSAASIIAKVSRDRQMRRFDKIYPDFGYAKHKGYGVKAHIEALKQHGSNELTRLSF 179 >gi|329768911|ref|ZP_08260338.1| ribonuclease HII [Gemella sanguinis M325] gi|328836628|gb|EGF86286.1| ribonuclease HII [Gemella sanguinis M325] Length = 175 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 110/167 (65%), Gaps = 2/167 (1%) Query: 42 VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT 100 + AA+IL ++ G+NDSKK+S KKREELY+KI + A+ +I +++ I+K+NI+ A Sbjct: 1 MAAAVILKKDSYFEGLNDSKKLSEKKREELYDKIRNEAVAYAICEVNNEEIEKYNIYNAA 60 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 A+ AVE L V P LID E+ P ++++KGD S+SIAAAS+IAKV RD L Sbjct: 61 RIAMQRAVEKLDVKPDFLLIDAM-PFENYPIPNYSMVKGDEKSVSIAAASVIAKVYRDNL 119 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 M+ KYP Y F+++ GY T KH + +++ G + IHR F P++++ Sbjct: 120 MKKYASKYPYYDFENNAGYGTKKHLEGLRKYGITPIHRRDFEPIKSM 166 >gi|317011523|gb|ADU85270.1| ribonuclease HII [Helicobacter pylori SouthAfrica7] Length = 204 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 92/187 (49%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKI--TSSAII 81 GIDE GRG LAG + VA ++ D + G+ DSKK+S KKR L +KI Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCDEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKSHDEVGF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-DLPCQA-FAVIKG 139 + S + ID + AI +EN + + IDG + D +IKG Sbjct: 64 FVVKKSAESIDSLGLGACLKLAIQEILENGRSLANEIKIDGNTAFGLDKRYPHIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 124 DETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|300783884|ref|YP_003764175.1| ribonuclease HII [Amycolatopsis mediterranei U32] gi|299793398|gb|ADJ43773.1| ribonuclease HII [Amycolatopsis mediterranei U32] Length = 280 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + L+ + + + PVAG+DE G GA AGP+VVAA +L + + DSK ++ K R+ Sbjct: 8 WGLQGALDRRGLGPVAGVDEAGAGACAGPLVVAACVLKQGDAAKLIELTDSKMMTAKARD 67 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +Y+ + + A+ + + ++ L Sbjct: 68 RVYDLVLARAVDYSVIVIPTEEVDLYGIRVMNLEGMRRAAAALRVQPGYVLTDGFRVPGL 127 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 AVIKGD IAAAS++AKVTRDR+M H +P YGFD H GY T+ H ++ Sbjct: 128 TAPNTAVIKGDRSVACIAAASVLAKVTRDRIMAGYHDDFPHYGFDVHKGYSTSDHLAALR 187 Query: 190 EKGPSCIHRLTFRPL 204 E GPS +HR ++ + Sbjct: 188 EHGPSDVHRWSYTNV 202 >gi|291004125|ref|ZP_06562098.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338] Length = 238 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 2/196 (1%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKR 68 ++ L++ + + + PVAG+DE GRGA AGP+VVAA L P + G+ DSK +S +R Sbjct: 8 NWALQSALDRRGLGPVAGVDEAGRGACAGPLVVAACALKPGDGRRFEGLTDSKVLSPAER 67 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E LY+ I + A+ + ++ Sbjct: 68 ERLYDVIQAKALSLSVIVIPADEVDALGIHVANLEGMRRAVAQLSVAPGYVLTDGFRVPG 127 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L + AV+KGD ++ +AAAS++AKVTRDR+M H+++P YGFD H GY T+ H + Sbjct: 128 LGAPSVAVVKGDLVAACVAAASVLAKVTRDRIMTGLHEQFPVYGFDEHKGYCTSDHTARL 187 Query: 189 KEKGPSCIHRLTFRPL 204 E GP HR + + Sbjct: 188 TEHGPCEEHRWCYANV 203 >gi|226227701|ref|YP_002761807.1| ribonuclease HII [Gemmatimonas aurantiaca T-27] gi|226090892|dbj|BAH39337.1| ribonuclease HII [Gemmatimonas aurantiaca T-27] Length = 228 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 66/193 (34%), Positives = 107/193 (55%), Gaps = 5/193 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELY 72 +E +R + + G+DEVGRG LAGPVV AI++ + G++DSK++ H+ R L Sbjct: 7 IERTLRAQYGSLLVGVDEVGRGPLAGPVVACAIVMPADRRAIAGVDDSKRLDHRTRVTLA 66 Query: 73 EKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGRSIPED 128 +I A+ S+ +AS + +D+ NI+ AT+ A+ A+ + ++ Sbjct: 67 ARIRDHALALSLGAASAREVDRLNIYHATVLAMQRALARIPQRLGAEPHHVVVDGKPLRT 126 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 L AV+KGD+ IA ASI+AKVTRDRLM +++ Y ++ + GY T +H+ I Sbjct: 127 LGVVHTAVVKGDAKCYGIACASIVAKVTRDRLMTALAQRHGHYAWERNAGYGTTQHRDGI 186 Query: 189 KEKGPSCIHRLTF 201 + G + HR +F Sbjct: 187 SQHGLTAHHRRSF 199 >gi|114321001|ref|YP_742684.1| RNase HII [Alkalilimnicola ehrlichii MLHE-1] gi|122311401|sp|Q0A7J3|RNH2_ALHEH RecName: Full=Ribonuclease HII; Short=RNase HII gi|114227395|gb|ABI57194.1| RNase HII [Alkalilimnicola ehrlichii MLHE-1] Length = 198 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 82/186 (44%), Positives = 114/186 (61%), Gaps = 2/186 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 +AG+DEVGRG LAG VV AA+ILDP+ G+ DSK++S +R EL +I + A +S+ Sbjct: 13 LLAGVDEVGRGPLAGAVVAAAVILDPDRPIAGLRDSKRLSAARRSELDRRIRAQALAVSL 72 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A ID+ NI +A++ A+ AV L P AL+DG P C A A++KGD Sbjct: 73 GRAEVAEIDRLNILQASMLAMQRAVAGLDPAPVQALVDGNRAPALP-CPAQAIVKGDDRV 131 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 +IAAASI+AK RD MR ++YP YGF+ H+GYPT +H Q ++ G HR +F P Sbjct: 132 PAIAAASILAKQARDAEMRALAEQYPGYGFERHMGYPTTEHLQALRTLGACPAHRRSFAP 191 Query: 204 LRNLSV 209 +R + Sbjct: 192 VRRCLL 197 >gi|29828995|ref|NP_823629.1| ribonuclease HII [Streptomyces avermitilis MA-4680] gi|39932356|sp|Q82KF0|RNH2_STRAW RecName: Full=Ribonuclease HII; Short=RNase HII gi|29606100|dbj|BAC70164.1| putative ribonuclease HII [Streptomyces avermitilis MA-4680] Length = 233 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 72/197 (36%), Positives = 110/197 (55%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A I P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTVK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L E++ ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTVLAEELRKWVTSYALGHASPEEIDALGMTAALRLAAVRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M ++ D+GF ++ GYP+ H+ Sbjct: 124 YLGSPWKVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGIEHADFGFAANAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFR 202 + E+GP+ HRL++ Sbjct: 184 AALAERGPTPYHRLSWA 200 >gi|256379913|ref|YP_003103573.1| ribonuclease H [Actinosynnema mirum DSM 43827] gi|255924216|gb|ACU39727.1| Ribonuclease H [Actinosynnema mirum DSM 43827] Length = 258 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 4/197 (2%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--DPNNIPFGINDSKKISHKKR 68 + +A + + + PVAG+DE GRGA AGP+VVAA +L G+ DSK ++ R Sbjct: 16 TWAFQAALDRRGLGPVAGVDEAGRGACAGPLVVAAAVLRTGDAARFAGLTDSKLLTAAAR 75 Query: 69 EELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + +++ + A ++ +D +H A ++ + AV L P L DG Sbjct: 76 DRMHDLVLERALDHAVVVVPADEVDAIGVHVANVEGMRRAVARLGTHPGYVLTDGF-PVP 134 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 L ++KGD ++ +AAAS++AKVTRDR+M H++ P YGFD H GY TA H Sbjct: 135 GLTAPNAPLVKGDRVAACVAAASVLAKVTRDRIMAELHEELPVYGFDVHKGYGTAAHTAA 194 Query: 188 IKEKGPSCIHRLTFRPL 204 + E GPS HR ++ + Sbjct: 195 LLEHGPSGQHRWSYANV 211 >gi|302554616|ref|ZP_07306958.1| ribonuclease HII [Streptomyces viridochromogenes DSM 40736] gi|302472234|gb|EFL35327.1| ribonuclease HII [Streptomyces viridochromogenes DSM 40736] Length = 233 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 73/197 (37%), Positives = 110/197 (55%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A I P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTIK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL E + + ++ AS + ID+ + A A A++ L V P + ++DG+ Sbjct: 64 RRTELAEVLRTWVTSFALGHASPEEIDELGMTAALRLAACRALDALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M + D+GF + GYP+ H+ Sbjct: 124 YLGAPWRVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGIDHADFGFADNAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFR 202 + E+GP+ HRL++ Sbjct: 184 AALAERGPTPYHRLSWA 200 >gi|223038412|ref|ZP_03608706.1| ribonuclease HII [Campylobacter rectus RM3267] gi|222880269|gb|EEF15356.1| ribonuclease HII [Campylobacter rectus RM3267] Length = 189 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 92/181 (50%), Gaps = 8/181 (4%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 + GIDE GRGALAGP+ VAA +L G NDSKK++ K+REEL+ +I ++ I+ Sbjct: 9 ICGIDEAGRGALAGPLAVAACVLKRE--IAGPNDSKKLTAKRREELFGQIAGNSEFLIAY 66 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 S++ ID+ + + A+ + + ++ D Sbjct: 67 FSNEQIDELGLSECLRRALRLFKSHFAGCEPLYDGNANYGTG-----VKTMVGADGKVAQ 121 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 ++AASI+AKV+RD LMR + YG+ +H GY T H I G S + R +FR ++ Sbjct: 122 VSAASILAKVSRDVLMRAWDGVHGGYGYAAHKGYGTKAHLDAIARLGDSPLQRRSFR-VK 180 Query: 206 N 206 + Sbjct: 181 S 181 >gi|317013110|gb|ADU83718.1| ribonuclease HII [Helicobacter pylori Lithuania75] Length = 204 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCNDQTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEVKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + A+ +EN + IDG + +IKG Sbjct: 64 FVVKKSTNEIDNLGLGACLKLAMQEILENGCSLANEIKIDGNTAFGLNKRYSNIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 124 DEKIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|301167133|emb|CBW26712.1| ribonuclease HII [Bacteriovorax marinus SJ] Length = 227 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 32/223 (14%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI---------PFGINDSKK 62 F+LE + + +AG DEVGRG LAGPVV +++D +++ GI DSKK Sbjct: 2 FDLEEI---GDFDFLAGCDEVGRGPLAGPVVGCCVLVDRDSLTVENVDFLLSHGITDSKK 58 Query: 63 ISHKKREELYEKITSSAI-----------------ISISSASHQYIDKHNIHKATLDAIY 105 IS KR+++ + + S+ S++ ID+ NI +A+L A+ Sbjct: 59 ISATKRKKILKSLGIEKYELASKNSLTLNKNLKISFSVREISNESIDQLNILRASLKAMG 118 Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK---GDSISLSIAAASIIAKVTRDRLMR 162 A + R+ L+ + DL + + GDS S I ASIIAK RD LM Sbjct: 119 DAFIDCFSGERTKLLIDGNKYIDLGLENVSEEFVIKGDSKSALIGLASIIAKEYRDNLMI 178 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 KKYP YG + H GYPT H+ I + G + IHR +F+ ++ Sbjct: 179 EMGKKYPGYGLEKHAGYPTKFHKDAISKLGVTPIHRKSFKGVK 221 >gi|297242877|ref|ZP_06926815.1| ribonuclease HII [Gardnerella vaginalis AMD] gi|296889088|gb|EFH27822.1| ribonuclease HII [Gardnerella vaginalis AMD] Length = 255 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 50/248 (20%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII----LDPNNIPFGIN 58 ++IP P F+ E + + V G+DEVGRG+LAGPV+V AA+I + N +P G+ Sbjct: 6 SNIPLVPSFKYEQDLLSEGYDWVIGLDEVGRGSLAGPVMVGAAVIGIKQVKENYMPEGLA 65 Query: 59 DSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSK +S K+REELYE + ++ S ++ ID+ I A A A+ ++ + Sbjct: 66 DSKLLSEKRREELYEPLQKWCTTWAVGSCTNTEIDEWGISYALGVAALKAISKVEEDIKK 125 Query: 118 ALIDGRSIPEDLPC-------------QAFAVIKGDSISLSIAAASIIAKV--------- 155 + + C + A++ G + A + A Sbjct: 126 LSFSVNADSGENTCAKLGADSGANSNFRIAAILDGPCDYIDKVANTFDAPYVPEPVKVHT 185 Query: 156 --------------------TRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGP 193 TRD LM K +Y Y + S+ GY + H+ IK+ GP Sbjct: 186 LVKADRQCASVAAAAVLAKVTRDNLMVSLAKNPQYAAYDWASNKGYGSLAHRNAIKKVGP 245 Query: 194 SCIHRLTF 201 S +HRL++ Sbjct: 246 SDLHRLSW 253 >gi|269469003|gb|EEZ80571.1| Ribonuclease HII [uncultured SUP05 cluster bacterium] Length = 171 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 98/170 (57%), Gaps = 3/170 (1%) Query: 39 GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHK 98 G V+ A+IL + + DSKK+S KKRE LY IT ++ A+ Q +D+ NI + Sbjct: 2 GSVIAGAVILPNDFNLPELTDSKKLSEKKREILYTLITQQCQWAVGEANTQEVDEINILQ 61 Query: 99 ATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD 158 AT+ A+ AVENL L+DG P+ C A+IKGD I+AASIIAKVTRD Sbjct: 62 ATMLAMRRAVENLNSQYDQVLVDGNRCPKLKNC--TAIIKGDLTEPVISAASIIAKVTRD 119 Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IHRLTFRPLRNL 207 R M + +YP+YGF H GY T H Q +++ G HR +F P+R L Sbjct: 120 RQMILLDAQYPEYGFAQHKGYGTRVHLQALEKFGAIKGQHRYSFAPVRKL 169 >gi|320159510|ref|YP_004172734.1| ribonuclease HII [Anaerolinea thermophila UNI-1] gi|319993363|dbj|BAJ62134.1| ribonuclease HII [Anaerolinea thermophila UNI-1] Length = 224 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 7/206 (3%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGIND 59 +P P E + + + VAG+DE GRGA AGPV AA+IL + G+ D Sbjct: 8 DLPHDPTLAFEQSLWQAGVLHVAGVDEAGRGAWAGPVAAAAVILPSGDSALLERLHGVRD 67 Query: 60 SKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SK+++ K RE E I +A + AS + I+ I AT A+ A++ + P Sbjct: 68 SKQMTAKAREGFAEVIRQTALAWGVGFASVEEIETQGIVPATRLAMMRALQACALSPTHL 127 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 LID +PE ++IKGD+ SLSIAAAS++AK RD LMR ++YP YGF+ H G Sbjct: 128 LIDALRLPEIP-LPQTSLIKGDARSLSIAAASVLAKTARDALMRDLARQYPQYGFELHKG 186 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPL 204 Y TA+H+ +++ GP +HR T+RP+ Sbjct: 187 YGTARHRAALEQWGPCPLHRRTYRPV 212 >gi|158522314|ref|YP_001530184.1| ribonuclease H [Desulfococcus oleovorans Hxd3] gi|158511140|gb|ABW68107.1| Ribonuclease H [Desulfococcus oleovorans Hxd3] Length = 195 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 85/194 (43%), Positives = 110/194 (56%), Gaps = 3/194 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E R +AG+DE GRG LAGPVV AA++ + I DSKK+S KKR LY Sbjct: 3 TYEDSARSDGFSIIAGLDEAGRGPLAGPVVAAAVVFPDDYTNDRITDSKKLSAKKRASLY 62 Query: 73 EKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + I A + I ID+ NI +A+L A+ AVENL P LIDG Sbjct: 63 DDIYRDALTVGIGIVDAVEIDRINILQASLLAMAMAVENLFPQPDFLLIDGTFTIPRPVG 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++KGDS S+SIAAASI+AKV+RD +M H YP++GF H GYPT H+ I + Sbjct: 123 -QRPIVKGDSASISIAAASIVAKVSRDNMMERYHLDYPEFGFSQHKGYPTKAHRNAIFQY 181 Query: 192 GPSCIHRLTFRPLR 205 GP+ IHR +F +R Sbjct: 182 GPTLIHRASF-TVR 194 >gi|283852127|ref|ZP_06369401.1| Ribonuclease H [Desulfovibrio sp. FW1012B] gi|283572517|gb|EFC20503.1| Ribonuclease H [Desulfovibrio sp. FW1012B] Length = 211 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 105/198 (53%), Gaps = 13/198 (6%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V GIDE GRG LAGPVV AA++L G+ DSKK+S KR+ L I A+ + Sbjct: 11 LVVGIDEAGRGCLAGPVVAAAVVLPEACQLPGLTDSKKLSATKRDRLAPAIKVQAVAWGL 70 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-------AFAV 136 A +D+ NI +AT A+ AV ++ P IDG A+ Sbjct: 71 GVAWPAEVDRINILQATFAAMARAVRAMRAAPTVLRIDGDKRIPAAYLNFLDEAPVQEAI 130 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I GD +I+AASI+AK +RDR+M + +++P YGF+ H GY A H +++ GP I Sbjct: 131 IGGDLTVPAISAASILAKTSRDRMMTVFARQFPGYGFEGHKGYGVAAHLAALRQLGPCRI 190 Query: 197 HRLTFRPL-----RNLSV 209 HRLTFR + R L + Sbjct: 191 HRLTFRGVLPETSRQLGL 208 >gi|116671022|ref|YP_831955.1| ribonuclease HII [Arthrobacter sp. FB24] gi|189043563|sp|A0JXT5|RNH2_ARTS2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|116611131|gb|ABK03855.1| Ribonuclease H [Arthrobacter sp. FB24] Length = 221 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 103/221 (46%), Gaps = 22/221 (9%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKI 63 + P + E +AGIDEVGRGA+AGPV V ++D + + DSK + Sbjct: 1 MSVAPTLDYEHRFLSSGARLLAGIDEVGRGAIAGPVTVGITVVDLSRPVLLDDVRDSKLL 60 Query: 64 SHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSAL 119 RE L + + ++ S + AS ID I A + + V P L Sbjct: 61 KESDRERLEPLVRNWSVASAVGHASAGEIDALGIIAALRTAGTRAWLQILAAGVTPDVVL 120 Query: 120 IDGRSIP----------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 +DG ++K D LS+AAASI+AKV RDR+MR Sbjct: 121 LDGSHNWLSPETQASLFDDAPAGPGCDAPVHTLVKADMQCLSVAAASILAKVERDRIMRS 180 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 H +YP +G+D + GY TA H++ ++ GPS HR++++ L Sbjct: 181 LHGEYPAFGWDENKGYGTASHKEALRAAGPSPYHRVSWQIL 221 >gi|326382879|ref|ZP_08204569.1| ribonuclease HII [Gordonia neofelifaecis NRRL B-59395] gi|326198469|gb|EGD55653.1| ribonuclease HII [Gordonia neofelifaecis NRRL B-59395] Length = 219 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 76/197 (38%), Positives = 111/197 (56%), Gaps = 4/197 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKKREE 70 LE + + + PVAG+DE GRGA AGP+VVAA +L + ++DSKK+S RE Sbjct: 21 TLEFTLARQGLGPVAGVDEAGRGACAGPLVVAACVLGAAQLKSLASLDDSKKLSEATRER 80 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY + A+ ++ + +D+ +H A ++ + AV L V P L DG L Sbjct: 81 LYTAVVRHAVSWNVVAIPAAEVDRLGVHVANIEGMRRAVAGLSVRPGYVLSDGF-QVPGL 139 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + VI GD+ + IAAAS++AKVTRDR+M + P Y F H GY TA H + Sbjct: 140 PAPSLPVIGGDANAACIAAASVLAKVTRDRMMVALDAELPGYEFAVHKGYSTALHMACLD 199 Query: 190 EKGPSCIHRLTFRPLRN 206 +GPS HR+++R +R+ Sbjct: 200 ARGPSVEHRMSYRNVRD 216 >gi|315637835|ref|ZP_07893025.1| ribonuclease HII [Campylobacter upsaliensis JV21] gi|315482076|gb|EFU72690.1| ribonuclease HII [Campylobacter upsaliensis JV21] Length = 174 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 6/176 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 GIDE GRGALAGP+ +AA L + DSKK+S KKRE+LY +I ++ I + Sbjct: 3 VGIDEAGRGALAGPLFMAACELLK--PLNELKDSKKLSEKKREKLYNEIILNSNYLILAF 60 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 S+ ID + K + +L + + DG + L + +IK DS+ + Sbjct: 61 SNAQIDTLGLSKC--LQRGLEIIHLHFEKQRKIFDGNTNYGVLGIEN--LIKADSLIAEV 116 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +AASI+AKV+RD++M+ KYP YGF+ H Y T H++ I + G +HRL+F+ Sbjct: 117 SAASILAKVSRDKVMQFLALKYPQYGFEIHKAYGTKAHRESIAKYGACKLHRLSFK 172 >gi|148652730|ref|YP_001279823.1| ribonuclease H [Psychrobacter sp. PRwf-1] gi|189043644|sp|A5WDY2|RNH2_PSYWF RecName: Full=Ribonuclease HII; Short=RNase HII gi|148571814|gb|ABQ93873.1| Ribonuclease H [Psychrobacter sp. PRwf-1] Length = 302 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 101/250 (40%), Gaps = 55/250 (22%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP------------NNIPFGIND 59 F + + G+DEVGRG L G VVVAA IL + + D Sbjct: 41 FSPDNQSQSGGFEFEIGVDEVGRGPLYGSVVVAAAILPKAWSGETEVGLLQDTPLAILTD 100 Query: 60 SKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SKK++ +KRE+L+E + A + ID+ NI +AT+ + A E L V Sbjct: 101 SKKLTERKREKLFEPVKQHALAYLVVEVPAGVIDEINILQATILGMRVACEQLMVEITKV 160 Query: 119 LIDGRSIPEDLPCQ------------------------------------------AFAV 136 D +P A A Sbjct: 161 WRDASELPTAPSTPLGFKLLIDGNKVPDLDEARLATHGICLADMTVTQPAGMVKFCAEAW 220 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGD+ +IAAAS++AKV RDR + +YP YG + H GYPT H + I G Sbjct: 221 VKGDARHNAIAAASVLAKVYRDRQLIADGARYPGYGLEGHKGYPTKAHVEAIARLGVLPE 280 Query: 197 HRLTFRPLRN 206 HR +F+P++ Sbjct: 281 HRRSFKPVQQ 290 >gi|297191618|ref|ZP_06909016.1| ribonuclease HII [Streptomyces pristinaespiralis ATCC 25486] gi|197719359|gb|EDY63267.1| ribonuclease HII [Streptomyces pristinaespiralis ATCC 25486] Length = 233 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 74/197 (37%), Positives = 109/197 (55%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAGIDEVGRGA AGPV V A + P G+ DSK I+ K Sbjct: 4 EPPTHAVERSIRATTGAKIVAGIDEVGRGAWAGPVTVCAAVTGLRRPPVGLTDSKLITPK 63 Query: 67 KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R E+ E + + AS + ID+ + A A A+E L V P + ++DG+ Sbjct: 64 RRAEMAELLEGWVTAHALGHASPEEIDELGMTAALRLAAGRALEGLPVRPDAIILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 +P Q VIKGD +++AAAS+IAKV RD +M +++ +GF + GYP+ H+ Sbjct: 124 YLGVPWQVRTVIKGDQSCVAVAAASVIAKVHRDAMMAQLPEEFTAFGFADNAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFR 202 ++E GP+ HRL++ Sbjct: 184 AALRELGPTPYHRLSWA 200 >gi|297624822|ref|YP_003706256.1| Ribonuclease H [Truepera radiovictrix DSM 17093] gi|297166002|gb|ADI15713.1| Ribonuclease H [Truepera radiovictrix DSM 17093] Length = 211 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 74/203 (36%), Positives = 110/203 (54%), Gaps = 3/203 (1%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS 64 +IP P + LE + ++ +AG+DE GRGALAGPVV AA++L + PF DSK +S Sbjct: 2 TIPTPPDWRLEHTLWQRGYGVLAGVDEAGRGALAGPVVAAAVVLPRGDHPF--RDSKTLS 59 Query: 65 HKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 RE L E++ A ++ AS +D+ N+ +AT A A+ L + Sbjct: 60 PAARETLAEEVRRRALAWAVGCASASEVDRLNVLQATHLAAQRALCALAGRVAVDGLVTD 119 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + P AV K D+ S+ +AAAS++AK RD LMR ++YP YGF H GY ++ Sbjct: 120 FLKLPFPGPVLAVPKADATSVQVAAASLLAKTVRDALMRRLGERYPAYGFARHKGYGSST 179 Query: 184 HQQVIKEKGPSCIHRLTFRPLRN 206 H + + GP HR +F P++ Sbjct: 180 HLRALAAHGPCPEHRRSFGPVQR 202 >gi|308064100|gb|ADO05987.1| ribonuclease HII [Helicobacter pylori Sat464] Length = 204 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 9/190 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS-- 78 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + Sbjct: 1 MILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGE 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAV 136 + S ID + A+ +EN + IDG + + Sbjct: 61 IKFWVVKKSANEIDNLGLGACLKLAVQEILENDHSLANQIKIDGNTAFGLNKRYPNIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|302525179|ref|ZP_07277521.1| ribonuclease HII [Streptomyces sp. AA4] gi|302434074|gb|EFL05890.1| ribonuclease HII [Streptomyces sp. AA4] Length = 257 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKRE 69 + L+ + + + PVAG+DE G GA AGP+VVA+ +L P + + DSK ++ K R+ Sbjct: 3 WGLQGALERRGLGPVAGVDEAGAGACAGPLVVASCVLRPGDAARLPELTDSKMLTAKARD 62 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 +Y+++ A+ + ++ + Sbjct: 63 RVYDRVLQRALDYSVIVIPSEQVDLLGIRVMNLEGMRRAVAGLRTHPGYVLTDGFPVPGI 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P AVIKGD SIAAAS++AKVTRDR+M H++ P YGFD H GY T+ H + Sbjct: 123 PAPNVAVIKGDRSVASIAAASVLAKVTRDRIMAGLHEELPVYGFDVHKGYSTSDHLAALS 182 Query: 190 EKGPSCIHRLTFRPL 204 E GPS +HR ++ + Sbjct: 183 EHGPSPVHRWSYTNV 197 >gi|254429946|ref|ZP_05043653.1| ribonuclease HII [Alcanivorax sp. DG881] gi|196196115|gb|EDX91074.1| ribonuclease HII [Alcanivorax sp. DG881] Length = 220 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 85/188 (45%), Positives = 113/188 (60%), Gaps = 3/188 (1%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITS 77 + M VAG+DEVGRG L G VV AA++LDP + G+ DSKKIS KKR L +I S Sbjct: 25 AWQPGM-LVAGVDEVGRGPLVGAVVTAAVVLDPQHPIAGLADSKKISEKKRLALEAEIKS 83 Query: 78 SA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A ++ A ID+ NI AT+ A+ AV L + ++ L+DG +P C + AV Sbjct: 84 HALGWALGRAEPAEIDELNILHATMLAMQRAVAGLPMAAQAVLVDGNRVPALP-CPSQAV 142 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 +KGD +I+AASI+AKV RDR M H +YP YGFD H GYPTA H +++ G Sbjct: 143 VKGDGRVPAISAASILAKVARDREMHALHARYPQYGFDRHKGYPTAVHMAALEQHGALAE 202 Query: 197 HRLTFRPL 204 HR +F P+ Sbjct: 203 HRRSFGPV 210 >gi|261840038|gb|ACX99803.1| ribonuclease HII [Helicobacter pylori 52] Length = 204 Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 9/190 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS-- 78 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + Sbjct: 1 MILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGE 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAV 136 + S ID+ + AI +EN + + IDG + + Sbjct: 61 VEFWVVKKSANEIDRLGLGACLKLAIQEILENNRSLANGIKIDGNTAFGLNKRYPNIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|171463285|ref|YP_001797398.1| Ribonuclease H [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238689054|sp|B1XTV7|RNH2_POLNS RecName: Full=Ribonuclease HII; Short=RNase HII gi|171192823|gb|ACB43784.1| Ribonuclease H [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 197 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 80/186 (43%), Positives = 111/186 (59%), Gaps = 4/186 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISI 83 V G+DE GRG L G VV A++LDPNN G+ DSKK++ +RE LYE+I A + Sbjct: 5 WVCGVDEAGRGPLVGAVVAGAVVLDPNNPIEGLKDSKKLTAARREYLYEQIMEKAKAWGV 64 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVI---PRSALIDGRSIPEDLPCQAFAVIKGD 140 AS ID+ NI +AT+ A+ A+E+L + + +LP A A+IKGD Sbjct: 65 GEASPTEIDEINILQATMLAMRRAIEDLATRLGAWPDKALIDGNRCPELPIAAEAIIKGD 124 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + +I+AASI+AKVTRDR M H+++P+YGF H+GYPT H +K+ G HR Sbjct: 125 TKEPAISAASIVAKVTRDRQMMSLHERHPEYGFAQHMGYPTEAHFAALKQYGACDQHRRC 184 Query: 201 FRPLRN 206 F P+R Sbjct: 185 FSPVRK 190 >gi|254779865|ref|YP_003057971.1| ribonuclease HII [Helicobacter pylori B38] gi|254001777|emb|CAX30008.1| Ribonuclease HII (RNase HII) [Helicobacter pylori B38] Length = 204 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 9/193 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS-- 78 V GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + Sbjct: 1 MVLGIDEAGRGCLAGSLFVAGVVCSEKTALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGE 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAV 136 + S ID + AI +EN + IDG + + Sbjct: 61 VGFFVVKKSANEIDSLGLGACLKLAIQEILENGCSLANEIKIDGNTAFGLNKRYSNIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR M H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAMSKLGATPF 180 Query: 197 HRLTFRPLRNLSV 209 HR +F L+N ++ Sbjct: 181 HRHSF-TLKNRTL 192 >gi|269792962|ref|YP_003317866.1| Ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100597|gb|ACZ19584.1| Ribonuclease H [Thermanaerovibrio acidaminovorans DSM 6589] Length = 188 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 81/182 (44%), Positives = 111/182 (60%), Gaps = 5/182 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-SAI 80 VAG+DE GRG LAGPVV AA +L + + G+ DSK +S ++RE L+E I S + Sbjct: 3 VAGVDEAGRGPLAGPVVAAAAVLTRDQARELMALGLKDSKALSPRRREALFEAIRSLNVQ 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +AS ID+ ++ KA+L A+ AV L V P+ L+DG E L V+KGD Sbjct: 63 WRAQAASWGRIDRTHVLKASLWAMGMAVMALPVRPQLVLVDGSVPIEGLRIPQRCVVKGD 122 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S SI AAS+IAKV RDR+M + YP Y F SH GYPT +H++++ + GPS +HR + Sbjct: 123 SKVPSIMAASVIAKVLRDRVMLALDRLYPQYRFASHKGYPTEEHRRILSQLGPSPVHRRS 182 Query: 201 FR 202 F Sbjct: 183 FS 184 >gi|320008134|gb|ADW02984.1| Ribonuclease H [Streptomyces flavogriseus ATCC 33331] Length = 236 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 5/200 (2%) Query: 8 ERPHFELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATSGARTVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL + + AS Q ID + A A A++ L V P + ++DG+ Sbjct: 64 RRAELAPTLEKWVTAYGLGHASPQEIDDVGMTAALRLAATRALDMLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK---YPDYGFDSHVGYPTA 182 P VIKGD +++AAAS+IAKV RD +M + Y D+ F ++ GYP+ Sbjct: 124 YLGPPWNVRTVIKGDQSCIAVAAASVIAKVHRDTMMAELGAESGQYADFAFGANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFR 202 H+ ++E+GP+ HRL++ Sbjct: 184 VHRAALEERGPTPHHRLSWA 203 >gi|78185595|ref|YP_378029.1| ribonuclease HII [Synechococcus sp. CC9902] gi|97189417|sp|Q3AW47|RNH2_SYNS9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|78169889|gb|ABB26986.1| RNase HII [Synechococcus sp. CC9902] Length = 199 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 72/183 (39%), Positives = 97/183 (53%), Gaps = 5/183 (2%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG L GPV AA++LD G+ DSKK+S K+R L I Sbjct: 11 SRVAGVDEVGRGCLFGPVFAAAVVLDEVAEQRLWQAGLTDSKKLSAKRRAGLVPLIEQHC 70 Query: 80 IIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 + + AS ID I AT A+ A++ L P L+DG V+ Sbjct: 71 LTRGLGQASAHEIDAVGIRGATERAMLRALQKLAHPPNVVLVDGNLPLRLWSGSQQTVVG 130 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GDS S +IAAAS++AK RD L+R ++P YG + H GY TA HQ+ + GP+ +HR Sbjct: 131 GDSRSAAIAAASVLAKEARDALIRRLSDQFPGYGLERHAGYGTALHQKALLALGPTSLHR 190 Query: 199 LTF 201 +F Sbjct: 191 RSF 193 >gi|157414103|ref|YP_001484969.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9215] gi|166991069|sp|A8G702|RNH2_PROM2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|157388678|gb|ABV51383.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9215] Length = 205 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 100/180 (55%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAII 81 GIDEVGRGA+ GPV A ++L N G+ DSKK++ KKR+ L KI S+ Sbjct: 19 VGIDEVGRGAIFGPVFSAVVVLTEKNKFLLKQLGVKDSKKLTPKKRKFLVPKILLLSSDY 78 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I +S + ID I AT ++ A++ L+ P ++DG + ++ GDS Sbjct: 79 GIGQSSVREIDNLGIRVATELSMIRALKKLKEKPSELIVDGPLLLRPWRGTQKNIVSGDS 138 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SIA+ASI+AKV+RD LM KKY Y + GY T +H +IK+ G + +HR +F Sbjct: 139 KFISIASASIVAKVSRDNLMMKLEKKYSGYLIFKNKGYGTREHLSLIKKNGVTNLHRKSF 198 >gi|207092749|ref|ZP_03240536.1| ribonuclease HII [Helicobacter pylori HPKX_438_AG0C1] Length = 204 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 91/187 (48%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA + D + G+ DSKK+S KKR L +KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVACDEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S + ID + AI +EN + IDG + +IKG Sbjct: 64 FVVKKSAEAIDSLGLGACLRLAIEEILENGCSLANEIKIDGNTAFGLNKRYPHIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR MR H + +YG+D + GY T +H + I + G + HR Sbjct: 124 DETIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|290956942|ref|YP_003488124.1| ribonuclease HII [Streptomyces scabiei 87.22] gi|260646468|emb|CBG69565.1| putative ribonuclease HII [Streptomyces scabiei 87.22] Length = 233 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 73/197 (37%), Positives = 110/197 (55%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTIK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +RE L E++ ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRESLSEELLKWVTSHALGHASPEEIDDLGMTAALRLAAVRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M + D+GF ++ GYP+ H+ Sbjct: 124 YLGSPWRVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGVDHADFGFAANAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFR 202 + E+GP+ HRL++ Sbjct: 184 AALAERGPTPYHRLSWA 200 >gi|298530722|ref|ZP_07018124.1| Ribonuclease H [Desulfonatronospira thiodismutans ASO3-1] gi|298510096|gb|EFI34000.1| Ribonuclease H [Desulfonatronospira thiodismutans ASO3-1] Length = 214 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 76/189 (40%), Positives = 105/189 (55%), Gaps = 4/189 (2%) Query: 19 REKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKIT 76 + PV AG+DE GRG LAGPVV A ++L + + DSKKI+ K RE L +I Sbjct: 13 LQSGFDPVPPAGLDEAGRGCLAGPVVAAVVVLPLDAQIARLTDSKKITSKVRESLIPEIK 72 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 S+ S+ A + ID+ NI +AT+ A+ AV +L + P L+DG L Sbjct: 73 STCLAWSLGLAWPREIDRINILQATMTAMKRAVLHLGLTPGQLLVDGN-QKIPLNIPQKC 131 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++ GD I+AASI+AK RD LM ++YP YGF H GY T KH Q +K G S Sbjct: 132 IVGGDMTEPCISAASILAKTFRDMLMTKLDRRYPGYGFGQHKGYGTRKHLQALKSLGASP 191 Query: 196 IHRLTFRPL 204 +HR +F+ + Sbjct: 192 MHRKSFKGV 200 >gi|145295936|ref|YP_001138757.1| ribonuclease HII [Corynebacterium glutamicum R] gi|189043588|sp|A4QF39|RNH2_CORGB RecName: Full=Ribonuclease HII; Short=RNase HII gi|140845856|dbj|BAF54855.1| hypothetical protein [Corynebacterium glutamicum R] Length = 209 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 67/190 (35%), Positives = 91/190 (47%), Gaps = 4/190 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITS 77 + PVAG+DE GRGA GP+ +AA IL P + DSK +S RE+L I Sbjct: 3 RNGLGPVAGVDEAGRGACCGPISIAACILPDKPIQELAALTDSKNLSASTREKLMPLIKK 62 Query: 78 SA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 A S+ S Q ID+ I A + + AV L P L D +P + Sbjct: 63 HALAWSVIVISAQDIDRFGIQHANISGMRRAVAALDTQPGYVLTDAMKVP-GFTVPYLPI 121 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 I GD+ + IAAAS++AK TRD +M YP YG + H GY T H ++ G S Sbjct: 122 IGGDASARCIAAASVLAKQTRDDIMTDMANDYPHYGLEIHKGYSTKIHMDAVRHHGASPE 181 Query: 197 HRLTFRPLRN 206 HR ++ + Sbjct: 182 HRYSYANVAK 191 >gi|167949995|ref|ZP_02537069.1| ribonuclease HII [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 162 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 100/158 (63%), Gaps = 2/158 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG LAGPVV AA+ILDP G+ DSKK+S K+RE+L E+I + + ++ Sbjct: 6 FVAGVDEVGRGPLAGPVVAAAVILDPAQPIEGLADSKKLSEKRREQLAEQIRTQSLAWAL 65 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 A + ID+ NI +A+L A+ AVE L + P+ L+DG L C A+I GDS Sbjct: 66 GRAEVEEIDQINILQASLLAMRRAVEALALTPQRVLVDG-KHAPQLACPVEAIIGGDSSV 124 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +I+AASIIA V RDR M + +P YG H GYPT Sbjct: 125 EAISAASIIANVARDREMVELDQHHPGYGLARHKGYPT 162 >gi|302831956|ref|XP_002947543.1| hypothetical protein VOLCADRAFT_87765 [Volvox carteri f. nagariensis] gi|300267407|gb|EFJ51591.1| hypothetical protein VOLCADRAFT_87765 [Volvox carteri f. nagariensis] Length = 678 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 117/247 (47%), Gaps = 48/247 (19%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGAL----------------AGPVVVAAIILDPNNI 53 P ++E +R + V G DE GRG L G + V A P Sbjct: 226 PTQDMETQLRAQGYLAVGGADEAGRGPLAGPVVAAVVVLPPRSDPGLMGVGAEGDAPWQP 285 Query: 54 PFGINDSKKISHKKREELYEKITSSAI--ISISSASHQYIDKHNIHKATLDAIYHAV--- 108 P G+NDSK +S ++RE +YE++T+ ++S H+ ID+ NI +A L A+ + Sbjct: 286 PPGLNDSKAMSEEEREAVYEQLTTDPRVKWAVSVVEHEEIDRINILQAALGAMRESAVKL 345 Query: 109 ---------------------------ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 L+DG +P+DLP AV+KGD+ Sbjct: 346 LQQKQQQGQQQQQQQDAGSAAADPPSAPPPSPALDFLLVDGNRLPKDLPVPGRAVVKGDA 405 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAAS IAKVTRDRLM ++YP YGF H GY H + I++ GPS +HR +F Sbjct: 406 TVSCIAAASCIAKVTRDRLMMKLDEQYPQYGFAQHKGYGVPAHMEAIRKYGPSAVHRRSF 465 Query: 202 RPLRNLS 208 P+++++ Sbjct: 466 EPVKSMT 472 >gi|260907251|ref|ZP_05915573.1| ribonuclease HII [Brevibacterium linens BL2] Length = 243 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 102/224 (45%), Gaps = 32/224 (14%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISH 65 E+ + + V G+DEVGRGALAGPV V + D +P GI+DSK++S Sbjct: 8 DLSYESALLAEGYEFVIGVDEVGRGALAGPVSVGVALFDLREVTAAEVPAGIHDSKQLSA 67 Query: 66 KKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENL---------QVIP 115 R+ +++ A + + S + +D+ + A A A+ + Sbjct: 68 LSRQTATDRVNGWARATSVGSTTPNELDELGMTMALNLAGRRALSEMLLECVGSTDFPPS 127 Query: 116 RSALIDGRSIPEDLPC-----------------QAFAVIKGDSISLSIAAASIIAKVTRD 158 L+DG+ P Q VIKGD IAAASI+AKV RD Sbjct: 128 TMILLDGKHDWLSAPLTLDCLGIFGDAADLQLPQVRTVIKGDGSVPVIAAASIVAKVQRD 187 Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 M K P YG+ S+VGY T KH++ I + GPS HR +FR Sbjct: 188 EEMIALAKANPQYGWQSNVGYGTMKHRRGIADFGPSIHHRRSFR 231 >gi|302557990|ref|ZP_07310332.1| ribonuclease HII [Streptomyces griseoflavus Tu4000] gi|302475608|gb|EFL38701.1| ribonuclease HII [Streptomyces griseoflavus Tu4000] Length = 233 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTVK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R +L E + ++ AS + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTQLAETLRGWVTSYALGHASPEEIDAMGMTAALRLAAGRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD++M + D+GF + GYP+ H+ Sbjct: 124 YLGTPWRVRTVIKGDQSCVAVAAASVIAKVQRDKMMAELGIDHADFGFADNAGYPSPVHR 183 Query: 186 QVIKEKGPSCIHRLTFR 202 ++ +GP+ HRL++ Sbjct: 184 AALEVRGPTPYHRLSWA 200 >gi|332674122|gb|AEE70939.1| ribonuclease HII [Helicobacter pylori 83] Length = 204 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCNEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + AI +EN + + IDG + +IKG Sbjct: 64 WVVKKSANEIDNLGLGVCLKLAIQEILENGRSLTNKIKIDGNTAFGLNKRYSNIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR M H + +YG+D + GY T +H + + + G + HR Sbjct: 124 DEKIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|110598302|ref|ZP_01386577.1| Ribonuclease H [Chlorobium ferrooxidans DSM 13031] gi|110340110|gb|EAT58610.1| Ribonuclease H [Chlorobium ferrooxidans DSM 13031] Length = 205 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 115/196 (58%), Gaps = 7/196 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKK 67 E + + V GIDE GRG LAGPVV AA++ P G +NDSKK+S + Sbjct: 4 SYEWPLWQT-SEFVCGIDEAGRGPLAGPVVAAAVVFSRWFSPEGSILEKLNDSKKLSSRV 62 Query: 68 REELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 REEL I ++A +++ + ID+ NI +AT+ A+ ++E L ++P L+DG Sbjct: 63 REELAPAIKAAALYWAVTEIEPEIIDRINIFQATMLAMNRSIEALGMLPELLLVDGNRFR 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 LP ++KGD+ SIAAAS++AK RD +M + +P+YGFD H GY TA+H + Sbjct: 123 PHLPIPYETIVKGDAKVFSIAAASVLAKTRRDEIMTACSRSWPEYGFDRHFGYATAEHVR 182 Query: 187 VIKEKGPSCIHRLTFR 202 I++ G +HR++FR Sbjct: 183 AIRQYGRCPLHRVSFR 198 >gi|255025707|ref|ZP_05297693.1| ribonuclease HII [Listeria monocytogenes FSL J2-003] gi|255028970|ref|ZP_05300921.1| ribonuclease HII [Listeria monocytogenes LO28] Length = 233 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 79/171 (46%), Positives = 108/171 (63%), Gaps = 3/171 (1%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ L+ Sbjct: 60 QYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALF 119 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 EKI AI I + H ID+ NI++AT A+ A+ L P LID + Sbjct: 120 EKIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMCEALNQLTPEPDFVLIDAMPLRYTEA- 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 ++IKGD+ S+SIAAASIIAKVTRDRLM++ +KYP Y F +++GY T Sbjct: 179 -ELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYDFANNMGYGTK 228 >gi|219848742|ref|YP_002463175.1| ribonuclease HII [Chloroflexus aggregans DSM 9485] gi|254807969|sp|B8GBB1|RNH2_CHLAD RecName: Full=Ribonuclease HII; Short=RNase HII gi|219543001|gb|ACL24739.1| Ribonuclease H [Chloroflexus aggregans DSM 9485] Length = 212 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 90/213 (42%), Gaps = 31/213 (14%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALA------------------GPVVVAAIILDPN 51 P +E + + +AGIDE GRG A G Sbjct: 3 PDLSIEQTLLARGYRVLAGIDEAGRGCWAGPVVAAAVVLAPIVYERPG------------ 50 Query: 52 NIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL 111 + ++DSK+++ RE Y + A ++ Sbjct: 51 -LLDAVDDSKQLTAVARERAYTLVQRYARGIGVGTVPAFLVDAYGILPATRLAMTLALLS 109 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 AL+ + ++++GD+ SLSIAAASIIAKVTRDRLM+ A + YP Y Sbjct: 110 LPCSVDALLIDAERLPGIRVPQESLVRGDARSLSIAAASIIAKVTRDRLMQTADRCYPQY 169 Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 GF H GY T H++ +++ GPS HR TF+P+ Sbjct: 170 GFALHKGYGTPVHRRALRQYGPSPFHRRTFQPV 202 >gi|260772236|ref|ZP_05881152.1| ribonuclease HII [Vibrio metschnikovii CIP 69.14] gi|260611375|gb|EEX36578.1| ribonuclease HII [Vibrio metschnikovii CIP 69.14] Length = 170 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 95/167 (56%), Gaps = 2/167 (1%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKA 99 +V AA+ILDP G+NDSKK+S KKR L +I + A S+ S ID+ NI +A Sbjct: 1 MVTAAVILDPAQPINGLNDSKKLSEKKRLALLPEIQAKALAWSVGRCSPSEIDQLNIFQA 60 Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 T+ A+ AV L + P L+DG +P+ A AV+KGD I+AASIIAKV RD+ Sbjct: 61 TMLAMQRAVAGLAIQPDLVLVDGNKVPKLPMA-AEAVVKGDLRVAQISAASIIAKVVRDQ 119 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 M YP +GF H GYPT H I++ G HR +F P++ Sbjct: 120 EMAELDLLYPQFGFAQHKGYPTKAHFAAIEQHGVIDQHRRSFSPVKR 166 >gi|317178386|dbj|BAJ56174.1| ribonuclease HII [Helicobacter pylori F30] Length = 204 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 9/190 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS-- 78 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + Sbjct: 1 MILGIDEAGRGCLAGSLFVAGVVCGEKTASEFLSMGLKDSKKLSPKKRFFLEDKIKTHGE 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAV 136 + S ID + AI +EN + + IDG + + Sbjct: 61 MKFWVVKKSANEIDGLGLGACLKLAIQEILENGRSLANKIKIDGNTAFGLNKRYSNIETI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR M H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMLKLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|7240593|gb|AAB33869.2| RNase HII [Caulobacter vibrioides] Length = 192 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 83/174 (47%), Positives = 103/174 (59%), Gaps = 3/174 (1%) Query: 33 GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYI 91 GR AGPV A+ILDP+ IP G+NDSKK+S K R L E+I AI + AS + I Sbjct: 7 GRAPWAGPVSAGAVILDPDRIPKGLNDSKKLSAKARAALEEEIKDVAISWCVGLASIEEI 66 Query: 92 DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151 + NI A A+ AVE L V P AL+DG + PC VIKGDS+S SIAAASI Sbjct: 67 AQLNILHAAGLAMRRAVEGLAVTPAFALVDGNYAFKL-PCPVKTVIKGDSLSCSIAAASI 125 Query: 152 IAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 +AK RDR+M A YP Y F H GY H + ++ GPS IHRL + P++ Sbjct: 126 LAKEARDRIMIEADALYPGY-FAGHKGYHAKVHVEGLRRLGPSPIHRLGWAPVK 178 >gi|285018804|ref|YP_003376515.1| ribonuclease hII (rnase hII, degrades rna of DNA-rna hybrids) protein [Xanthomonas albilineans GPE PC73] gi|283474022|emb|CBA16523.1| probable ribonuclease hII (rnase hII, degrades rna of dna-rna hybrids) protein [Xanthomonas albilineans] Length = 219 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 85/208 (40%), Positives = 119/208 (57%), Gaps = 13/208 (6%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-PFGIND 59 +F +P P AG+DE GRG LAGPV VAA++ DPN G++D Sbjct: 10 LFPEPLPPDPD-----------SRLYAGVDEAGRGPLAGPVAVAAVVFDPNQPRINGLDD 58 Query: 60 SKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 SK+++ +RE LY +I A + + ID+ NI++AT+ + AVE + + A Sbjct: 59 SKQLTAARRETLYPRIIERALAWQVVLIEAEEIDRLNIYQATMLGMRRAVEGVAHVAGFA 118 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 IDG +P+ LPC A A+I GD++ +I AASIIAKVTRDR+M+ H ++P YGFD H G Sbjct: 119 RIDGNRVPKGLPCPAEALIGGDALDRAIMAASIIAKVTRDRIMQHLHAEHPHYGFDLHKG 178 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 Y T H + GP HR +F P+R Sbjct: 179 YATPAHLAALAAHGPCPQHRRSFAPVRK 206 >gi|134102484|ref|YP_001108145.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338] gi|189043652|sp|A4FME5|RNH2_SACEN RecName: Full=Ribonuclease HII; Short=RNase HII gi|133915107|emb|CAM05220.1| ribonuclease HII [Saccharopolyspora erythraea NRRL 2338] Length = 228 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 2/193 (1%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 +++ + + + PVAG+DE GRGA AGP+VVAA L P + G+ DSK +S +RE L Sbjct: 1 MQSALDRRGLGPVAGVDEAGRGACAGPLVVAACALKPGDGRRFEGLTDSKVLSPAERERL 60 Query: 72 YEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 Y+ I + A+ + ++ L Sbjct: 61 YDVIQAKALSLSVIVIPADEVDALGIHVANLEGMRRAVAQLSVAPGYVLTDGFRVPGLGA 120 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + AV+KGD ++ +AAAS++AKVTRDR+M H+++P YGFD H GY T+ H + E Sbjct: 121 PSVAVVKGDLVAACVAAASVLAKVTRDRIMTGLHEQFPVYGFDEHKGYCTSDHTARLTEH 180 Query: 192 GPSCIHRLTFRPL 204 GP HR + + Sbjct: 181 GPCEEHRWCYANV 193 >gi|33864055|ref|NP_895615.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9313] gi|39932296|sp|Q7V4Z5|RNH2_PROMM RecName: Full=Ribonuclease HII; Short=RNase HII gi|33635639|emb|CAE21963.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9313] Length = 218 Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 62/181 (34%), Positives = 97/181 (53%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRG GPV A++L + G+ DSK ++ ++R L I +A Sbjct: 26 IAGVDEVGRGCWFGPVFAGAVVLTEVAAVELLAEGLTDSKALTVRRRARLVPLIEDAATA 85 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ AS + ID I AT A+ A++ L L+DG V++GD Sbjct: 86 WALGQASAREIDALGIRSATELAMLRALQRLPTPLELVLVDGVLPLRLWMGPQRTVVRGD 145 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S +IAAAS++AK RD L++ ++ YG + HVGY TA H++ + + GP+ +HR + Sbjct: 146 SKCAAIAAASVLAKQARDGLIKRLASRFYGYGLERHVGYGTAIHRRALLDLGPTELHRRS 205 Query: 201 F 201 F Sbjct: 206 F 206 >gi|317178062|dbj|BAJ55851.1| ribonuclease HII [Helicobacter pylori F16] Length = 204 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 9/190 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS-- 78 + GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + Sbjct: 1 MILGIDEAGRGCLAGSLFVAGVVCSEKTASEFLSMGLKDSKKLSPKKRFFLEDKIKTHGE 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAV 136 + S ID + AI +EN + + IDG + + Sbjct: 61 VEFWVVKKSANEIDSLGLGACLKLAIQEILENGRSLANGIKIDGNTAFGLNKRHSNIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDEKIAQIAMASVLAKAFKDREMRQLHALFEEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|220912962|ref|YP_002488271.1| ribonuclease HII [Arthrobacter chlorophenolicus A6] gi|219859840|gb|ACL40182.1| Ribonuclease H [Arthrobacter chlorophenolicus A6] Length = 260 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 72/215 (33%), Positives = 103/215 (47%), Gaps = 22/215 (10%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKK 67 P E + + + +AG+DEVGRGALAGPV V A + L+ G+ DSK + + Sbjct: 30 PTLRHERTFKAQGVRFLAGVDEVGRGALAGPVSVGIAVVDLERQKPLAGVRDSKLLRATE 89 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDGR 123 RE L + ++ S + AS ID I A + + VIP L+DG Sbjct: 90 RERLEPLVRRWSVASAVGHASAHEIDALGIIAALRLAGTRAWQDILAAGVIPDMVLLDGS 149 Query: 124 SIP----------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 +K D LS+AAAS+IAKV RDR MR H + Sbjct: 150 HNWLSPAEQLSLFDQEAPEAACDAPVHTKVKADMQCLSVAAASVIAKVERDRTMRELHAE 209 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 YPD+G+D + GY T H+ V++ GP+ HR+++R Sbjct: 210 YPDFGWDINNGYATVLHRDVLRAAGPTPYHRVSWR 244 >gi|108563693|ref|YP_628009.1| ribonuclease HII [Helicobacter pylori HPAG1] gi|123373683|sp|Q1CRT7|RNH2_HELPH RecName: Full=Ribonuclease HII; Short=RNase HII gi|107837466|gb|ABF85335.1| ribonuclease HII [Helicobacter pylori HPAG1] Length = 204 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA + + G+ DSKK+S KKR L +KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVACSEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVGF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S + ID + AI +EN + IDG + +IKG Sbjct: 64 FVVKKSAEAIDSLGLGACLKLAIEEILENGCSLANEIKIDGNTAFGLNKRYPNIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 124 DETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|282862315|ref|ZP_06271377.1| Ribonuclease H [Streptomyces sp. ACTE] gi|282562654|gb|EFB68194.1| Ribonuclease H [Streptomyces sp. ACTE] Length = 236 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 74/200 (37%), Positives = 107/200 (53%), Gaps = 5/200 (2%) Query: 8 ERPHFELEAMVRE-KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK IS K Sbjct: 4 EPPTHTVERSLRATSGAKTVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLISPK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL + S + AS + ID + A A A++ L V P + ++DG+ Sbjct: 64 RRAELAPVLESWVTAFGLGHASPEEIDDLGMTAALRLAAVRALDALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTA 182 P + VIKGD +++AAAS+IAKV RD +M +Y D+ F ++ GYP+ Sbjct: 124 YLGDPWKVRTVIKGDQSCIAVAAASVIAKVRRDTMMAELGADSDRYADFAFGANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFR 202 H+ ++E GP+ HRL++ Sbjct: 184 VHRAALEEWGPTPHHRLSWS 203 >gi|116075704|ref|ZP_01472963.1| Ribonuclease HII and HIII [Synechococcus sp. RS9916] gi|116067019|gb|EAU72774.1| Ribonuclease HII and HIII [Synechococcus sp. RS9916] Length = 193 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI-I 81 AG+DEVGRG GPV AA++L G+ DSK ++ + R L I +A Sbjct: 6 AGVDEVGRGCWFGPVFAAAVVLSEAAASALTAEGLTDSKALTARHRARLVPLIEDAAEAW 65 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ AS + ID H I +AT A+ A++ L P L+DG P +++GDS Sbjct: 66 ALGQASAREIDHHGIRRATELAMLRALQRLPQQPALVLVDGVLPLRLWPHSQQTIVRGDS 125 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SIAAAS++AK +RD L+R +++P YG + H GY TA H+Q + GP+ +HR +F Sbjct: 126 SKASIAAASVLAKESRDALIRRLAERFPGYGLERHAGYGTAVHRQALLAHGPTAMHRCSF 185 >gi|329939992|ref|ZP_08289274.1| ribonuclease HII [Streptomyces griseoaurantiacus M045] gi|329300818|gb|EGG44714.1| ribonuclease HII [Streptomyces griseoaurantiacus M045] Length = 233 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 110/197 (55%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A + P G+ DSK ++ K Sbjct: 4 EPPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAVTGLRRPPPGLTDSKLLTVK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL E + + ++ AS Q ID+ + A A A+E L V P + ++DG+ Sbjct: 64 RRTELAETLRTWVTSYALGHASPQEIDERGMTAALRLAAVRALEALPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS++AKV RD++M + D+ F ++ GYP+ H+ Sbjct: 124 YLGSPWKVRTVIKGDQSCVAVAAASVLAKVQRDKMMAELGVDHADFAFAANAGYPSPVHR 183 Query: 186 QVIKEKGPSCIHRLTFR 202 ++ +GP+ HRL++ Sbjct: 184 AALEVRGPTPYHRLSWA 200 >gi|282856252|ref|ZP_06265535.1| ribonuclease HII [Pyramidobacter piscolens W5455] gi|282586011|gb|EFB91296.1| ribonuclease HII [Pyramidobacter piscolens W5455] Length = 186 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 73/181 (40%), Positives = 104/181 (57%), Gaps = 5/181 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELY-EKITSSAII 81 G+DE GRG LAGPVV AA++L G+ DSKK++ +RE+++ + + + Sbjct: 4 VGVDEAGRGPLAGPVVAAAVVLTEAQREDLVGLGLRDSKKMTPPRREKVFARMLELNVVW 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 +SA + ID+ NI +ATL A+ AVE L + ++DG L A+I GD Sbjct: 64 RAASAPAERIDRLNILRATLWAMRRAVEKLPLDVDGVIVDGNQEIPGLSVYQQAIIGGDD 123 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 I I+AAS++AKV RDR+M + YPDY F H GY T H++ I E GP+ IHR +F Sbjct: 124 IYPQISAASVVAKVLRDRVMTVYDGIYPDYDFARHKGYGTEAHRRAIAELGPTPIHRRSF 183 Query: 202 R 202 Sbjct: 184 S 184 >gi|119963253|ref|YP_948173.1| ribonuclease HII [Arthrobacter aurescens TC1] gi|119950112|gb|ABM09023.1| putative ribonuclease HII [Arthrobacter aurescens TC1] Length = 256 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 66/214 (30%), Positives = 103/214 (48%), Gaps = 22/214 (10%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKK 67 P ++E + +AG+DEVGRGALAGPV V A + L+ + + + DSK + + Sbjct: 35 PTLDVERSFLSSGVRLLAGVDEVGRGALAGPVSVGIAVVNLENHGLLADVRDSKLLKPED 94 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDGR 123 R+ L + A+ S + AS + ID+ I A + + + P L+DG Sbjct: 95 RDRLEPLVREWAVASAVGHASSREIDQIGIIAALRLAGTRAWFEILAGGITPDVVLLDGS 154 Query: 124 SIP----------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 +K D LS+AAAS++AKV RDR+M H + Sbjct: 155 HNWLSPDVQASLFDTPDSGPWCEAPVHTRVKADMSCLSVAAASVLAKVARDRIMVDLHSE 214 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 P YG++ + GY T+ H+ VI+ +GPS HR ++ Sbjct: 215 IPSYGWNVNKGYATSAHRDVIRLQGPSAHHRTSW 248 >gi|317182569|dbj|BAJ60353.1| ribonuclease HII [Helicobacter pylori F57] Length = 204 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 92/187 (49%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + AI +ENL P + IDG + +IKG Sbjct: 64 WVVKKSANEIDNLGLGACLKLAIQEILENLSASPHAIKIDGNTAFGLNKRYSNIETIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + HR Sbjct: 124 DEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|87301873|ref|ZP_01084707.1| ribonuclease HII [Synechococcus sp. WH 5701] gi|87283441|gb|EAQ75396.1| ribonuclease HII [Synechococcus sp. WH 5701] Length = 198 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 5/184 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78 +AG+DEVGRG L GPV AA++L G+ DSK + + R+ L IT+ Sbjct: 3 HRVLAGVDEVGRGCLFGPVFAAAVVLPAQAAAPLAAAGLTDSKALRPRHRQRLVPLITAQ 62 Query: 79 AI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 A ++ AS ID I AT A+ A++ L P ++DG P + ++ Sbjct: 63 AEAWALGQASAADIDHIGIRAATEKAMVRALQRLPQAPALVVVDGVLPLRLWPGRQRTLV 122 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 GD L+IAAAS++AK RD L+ + +P YG + H GY TA H++ + GPS +H Sbjct: 123 HGDRRCLAIAAASVLAKQARDALIVRLAEGFPGYGLERHAGYGTALHREALIRLGPSRLH 182 Query: 198 RLTF 201 RL+F Sbjct: 183 RLSF 186 >gi|262202029|ref|YP_003273237.1| ribonuclease H [Gordonia bronchialis DSM 43247] gi|262085376|gb|ACY21344.1| Ribonuclease H [Gordonia bronchialis DSM 43247] Length = 228 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 80/195 (41%), Positives = 106/195 (54%), Gaps = 4/195 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREE 70 E + + PVAG+DE GRGA AGP+VVAA +L P ++DSK+++ + RE Sbjct: 18 TFEFALHRNGLGPVAGVDEAGRGACAGPLVVAACVLKPTQLTSLADLDDSKRLTERTRET 77 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY +T A S ID+ IH A ++ + AV L V P L DG +P L Sbjct: 78 LYRAVTRYAHSWSAVIIDAAEIDRIGIHVANIEGMRRAVAALDVTPGYVLSDGFKVP-GL 136 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 + VI GD + IAAASIIAKVTRDR+M ++P Y F H GY TA H I Sbjct: 137 TAPSLPVIGGDGAAACIAAASIIAKVTRDRIMVAMDDEHPGYDFAVHKGYSTAHHMSRID 196 Query: 190 EKGPSCIHRLTFRPL 204 GPS HR+++R + Sbjct: 197 TAGPSPQHRMSYRNV 211 >gi|261838642|gb|ACX98408.1| ribonuclease HII [Helicobacter pylori 51] Length = 204 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + + G+ DSKK+S KKR L +KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCNEKTALEFLSMGLKDSKKLSPKKRFFLEDKIKTHGEVKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + AI +EN + + IDG + +IKG Sbjct: 64 WVVKKSANEIDSLGLGVCLKLAIQEILENGRSLANKIKIDGNTAFGLNKRYSNIETIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS+IAK +DR MR H + +YG+D + GY T +H + + + G + HR Sbjct: 124 DEKIAQIAMASVIAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|88807950|ref|ZP_01123461.1| Ribonuclease HII and HIII [Synechococcus sp. WH 7805] gi|88787989|gb|EAR19145.1| Ribonuclease HII and HIII [Synechococcus sp. WH 7805] Length = 194 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 68/182 (37%), Positives = 102/182 (56%), Gaps = 5/182 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI 80 + G+DEVGRG L GPV AA+ L + G+ DSK +S ++R +L +I + A Sbjct: 1 MIVGVDEVGRGCLFGPVFAAAVSLTESAAAELTALGLTDSKALSARRRVDLVPQIQAKAS 60 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ S + ID H I AT A+ A++ L P L+DG ++++G Sbjct: 61 AWALGQGSAREIDAHGIRVATELAMLRALQKLPKHPELVLVDGVLPLRLWAGDQRSIVRG 120 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS SIAAAS++AKVTRD LM+ +++P YG + H GY T H+Q + GP+ +HR Sbjct: 121 DSKEASIAAASVLAKVTRDGLMQRLAERFPGYGLERHAGYGTVLHRQSLLAAGPTSMHRR 180 Query: 200 TF 201 +F Sbjct: 181 SF 182 >gi|297156716|gb|ADI06428.1| ribonuclease HII [Streptomyces bingchenggensis BCW-1] Length = 243 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 72/197 (36%), Positives = 105/197 (53%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R V GIDEVGRGA AGPV V A + P G+ DSK +S K Sbjct: 14 EPPTHRVERSLRATTGAKIVVGIDEVGRGAWAGPVTVCAAVTGLRRPPAGLTDSKLLSPK 73 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 KR L +++ + ++ AS + ID + A A A++ L V P + ++DG+ Sbjct: 74 KRTALAQELETWVTSYALGHASPEEIDALGMTAALRLAATRALDGLPVRPDAVILDGKHD 133 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD LM + D+ F + GYP+ H+ Sbjct: 134 YLGKPWKVRTVIKGDQSCVAVAAASVIAKVRRDTLMAELGAAHADFRFGDNAGYPSPAHR 193 Query: 186 QVIKEKGPSCIHRLTFR 202 + E GP+ HRL++ Sbjct: 194 AALTELGPTPYHRLSWA 210 >gi|217033640|ref|ZP_03439068.1| hypothetical protein HP9810_899g76 [Helicobacter pylori 98-10] gi|216943986|gb|EEC23420.1| hypothetical protein HP9810_899g76 [Helicobacter pylori 98-10] Length = 204 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L ++I S Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEKEIRSHDEVKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + AI +EN + + IDG + +IKG Sbjct: 64 WVVKKSANEIDNLGLGACLKLAIQEILENGRSLANGIKIDGNTAFGLNKRYPNIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + HR Sbjct: 124 DEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|317181045|dbj|BAJ58831.1| ribonuclease HII [Helicobacter pylori F32] Length = 204 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEDKIKTHGEIKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + AI +EN + + IDG + +IKG Sbjct: 64 WVVKKSANEIDNLGLGACLKLAIQEILENDRSLANQIKIDGNTAFGLNKRYSNIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + HR Sbjct: 124 DEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|315226326|ref|ZP_07868114.1| ribonuclease HII 2 [Parascardovia denticolens DSM 10105] gi|315120458|gb|EFT83590.1| ribonuclease HII 2 [Parascardovia denticolens DSM 10105] Length = 250 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 34/229 (14%) Query: 10 PHFELEAMVRE----KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDS 60 P +++E + + + + G DEVGRG LAGPV+V A + +IP G+ DS Sbjct: 22 PSWQVEEALLQEADDRRPQWIIGCDEVGRGCLAGPVMVGACLFRAEDIPLLPIPAGLKDS 81 Query: 61 KKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAV----------- 108 K ++ KKRE L + + +A ++ S ++ ID + I +A A A+ Sbjct: 82 KLLTPKKRESLLDPLRAWAAGTAVGSCDNRGIDSYGIMEALGAAAIQAIDQAVFGLIGAG 141 Query: 109 ----------ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD 158 + +L+ ++ + V+KGD +A AS+IAKVTRD Sbjct: 142 DRVAVILDGPYDYISPAFRSLLAPQARIDPDDMTVTTVVKGDRRCACVAGASVIAKVTRD 201 Query: 159 RLMRIAHKKYPD---YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 R M ++P+ Y + + GY +A+H++ IKE+GPS HRL++ + Sbjct: 202 RYMVDLADRHPEWEAYAWRKNKGYGSAEHREAIKEQGPSPYHRLSWHLV 250 >gi|124024062|ref|YP_001018369.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9303] gi|189043640|sp|A2CC94|RNH2_PROM3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|123964348|gb|ABM79104.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9303] Length = 200 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 5/181 (2%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI- 80 +AG+DEVGRG GPV A++L + G+ DSK ++ ++R L I +A Sbjct: 8 IAGVDEVGRGCWFGPVFAGAVVLTEVAAVELLAEGLTDSKALTVRRRARLVPLIEDAATA 67 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ AS + ID I AT ++ A++ L L+DG V++GD Sbjct: 68 WALGQASAREIDALGIRSATELSMLRALQRLPTPLELVLVDGVLPLRLWMGPQRTVVRGD 127 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S +IAAAS++AK RD L++ ++ YG + HVGY TA H++ + + GP+ +HR + Sbjct: 128 SKCAAIAAASVLAKQARDGLIKRLASRFYGYGLERHVGYGTAIHRRALLDLGPTALHRRS 187 Query: 201 F 201 F Sbjct: 188 F 188 >gi|308062608|gb|ADO04496.1| ribonuclease HII [Helicobacter pylori Cuz20] Length = 204 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 9/190 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS-- 78 + GIDE GRG LAG + VA ++ + G+ DSKK+ KKR L +KI + Sbjct: 1 MILGIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLGPKKRFFLEDKIKTHGE 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAV 136 + S ID + A+ +EN + IDG + + Sbjct: 61 IKFWVVKKSANEIDNLGLGVCLKLAVQEILENDHSLANQIKIDGNTAFGLNKRYPNIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDERIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|315587212|gb|ADU41593.1| ribonuclease H [Helicobacter pylori 35A] Length = 204 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLEMGLKDSKKLSPKKRFFLEGKIKTHGEVEF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID+ + AI +EN + + IDG + +IKG Sbjct: 64 WVVKKSANEIDRLGLGACLKLAIQEILENGRSLTNGIKIDGNTAFGLNKRYSNIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + HR Sbjct: 124 DEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|71065472|ref|YP_264199.1| ribonuclease HII [Psychrobacter arcticus 273-4] gi|97189215|sp|Q4FT93|RNH2_PSYA2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|71038457|gb|AAZ18765.1| probable ribonuclease HII [Psychrobacter arcticus 273-4] Length = 287 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 96/227 (42%), Gaps = 40/227 (17%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD------------PNNIPFGINDSKKISHKK 67 + G+DE GRG L G V VA+ IL + + DSK++S KK Sbjct: 57 DTGSALQIGVDEAGRGPLLGSVNVASAILPRAWSGLIEAQLLKDTPLSILTDSKQLSEKK 116 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA------------------- 107 R+ LY + AI I+ ID+ NI +AT+ + Sbjct: 117 RDLLYPLVQQYAIGYIIADIPAAVIDQINILQATMLGMRLCTEILLEVIAHHLNDMAQDI 176 Query: 108 --------VENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 + + + + ++ A +KGD+ SIAAASI+AKV+RD+ Sbjct: 177 HQLQTAVLFDGNRCPELNYTSLAQLGIKESMIDCQAWVKGDARHTSIAAASILAKVSRDK 236 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 M ++P+YG H GYPT H + I+ G HR +F P+R Sbjct: 237 TMYALDTEHPEYGIAKHKGYPTRAHMEAIETYGVLSAHRRSFAPVRK 283 >gi|219118288|ref|XP_002179922.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408975|gb|EEC48908.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 189 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 80/191 (41%), Positives = 108/191 (56%), Gaps = 11/191 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKIS-HKKREELYEKIT--SSAI 80 V G+DE GRG LAGPVV AA ++ + GI DSK ++ REELYEKI + Sbjct: 1 QYVIGVDEAGRGPLAGPVVAAAAVVPID--IVGIADSKTLTRESVREELYEKIVSSDNVR 58 Query: 81 ISISSASHQYIDKHNIHKATLDAIY------HAVENLQVIPRSALIDGRSIPEDLPCQAF 134 +++ ID+ NI +ATL + + + AL+DG +P+ + + Sbjct: 59 WAVAVIDSARIDEVNILQATLQGMRLAASAVAGISEVPDNAFYALLDGNRLPKKMAMRVE 118 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++KGDS SIAAASI+AKVTRDRLM K YP+Y H GYPTA H +++ G S Sbjct: 119 TMVKGDSREYSIAAASILAKVTRDRLMHGYDKLYPEYNLAQHKGYPTAAHMDAVRKYGAS 178 Query: 195 CIHRLTFRPLR 205 IHR TF PL+ Sbjct: 179 PIHRRTFAPLK 189 >gi|182435502|ref|YP_001823221.1| ribonuclease HII [Streptomyces griseus subsp. griseus NBRC 13350] gi|238688997|sp|B1VXS2|RNH2_STRGG RecName: Full=Ribonuclease HII; Short=RNase HII gi|178464018|dbj|BAG18538.1| putative ribonuclease HII [Streptomyces griseus subsp. griseus NBRC 13350] Length = 236 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 73/200 (36%), Positives = 110/200 (55%), Gaps = 5/200 (2%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK ++ + Sbjct: 4 EPPTHTVERSLRATTGARTVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPR 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL + S ++ AS Q ID + A A A+E L V P + ++DG+ Sbjct: 64 RRAELDPVLRSWVTAYALGDASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTA 182 +P + VIKGD +++AAAS+IAKV RDR+M + D+ F ++ GYP+ Sbjct: 124 YLGVPWKVRTVIKGDQSCIAVAAASVIAKVHRDRMMAELGAASEDCADFDFGANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFR 202 H+ ++E+GP+ HRL++ Sbjct: 184 VHRAALEERGPTAHHRLSWA 203 >gi|188528111|ref|YP_001910798.1| ribonuclease HII [Helicobacter pylori Shi470] gi|238691950|sp|B2UV86|RNH2_HELPS RecName: Full=Ribonuclease HII; Short=RNase HII gi|188144351|gb|ACD48768.1| ribonuclease HII [Helicobacter pylori Shi470] Length = 204 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 9/190 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS-- 78 + GIDE GRG LAG + VA ++ + G+ DSKK+ KKR L +KI + Sbjct: 1 MILGIDEAGRGCLAGSLFVAGVVCGEKTALEFLEMGLKDSKKLGPKKRFFLEDKIKTHGE 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAV 136 + S ID + A+ +EN + + IDG + + Sbjct: 61 IKFWVVKKSANEIDNLGLGACLKLAVQEILENGRSLANQIKIDGNTAFGLNKRYPNIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + Sbjct: 121 IKGDERIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|109946755|ref|YP_663983.1| ribonuclease HII [Helicobacter acinonychis str. Sheeba] gi|123173609|sp|Q17ZE2|RNH2_HELAH RecName: Full=Ribonuclease HII; Short=RNase HII gi|109713976|emb|CAJ98984.1| rnhB [Helicobacter acinonychis str. Sheeba] Length = 193 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKI--TSSAII 81 GIDE GRG L G + VA ++ + + G+ DSKK+S KR L +KI Sbjct: 4 GIDEAGRGCLVGSLFVAGVVCGEKIALDFLKMGLKDSKKLSQNKRFFLEDKIKSHDEVKF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID ++ A+ +E L + ++ IDG + +IKG Sbjct: 64 CVIKKSAGEIDSLSLGVCLKLAVQEILEKLSPLAQTINIDGNTAFGLNKRYSNLKTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK ++DR M H + +YG+D + GY T KH + I + G + HR Sbjct: 124 DEKIAQIAMASVLAKTSKDREMLELHALFKEYGWDKNCGYGTKKHIEAIAKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SFA-LKN 189 >gi|78211866|ref|YP_380645.1| RNase HII [Synechococcus sp. CC9605] gi|97189422|sp|Q3AMU2|RNH2_SYNSC RecName: Full=Ribonuclease HII; Short=RNase HII gi|78196325|gb|ABB34090.1| Ribonuclease H [Synechococcus sp. CC9605] Length = 199 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 77/188 (40%), Positives = 106/188 (56%), Gaps = 7/188 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAII 81 VAG+DEVGRG L GPV AA++L+ + G+ DSKK+S K+R L I S + Sbjct: 13 VAGVDEVGRGCLFGPVFAAAVVLEGSAAECLLKAGLTDSKKLSAKRRAALVPLIQSLCVA 72 Query: 82 S-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 S + AS + ID I AT A+ A++ L P L+DG VI GD Sbjct: 73 SALGQASAREIDACGIRVATERAMLRALQRLPQSPGLVLVDGNLPLRLWHGPQRTVIAGD 132 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 S S +IAAAS++AK RD L+R ++P YG + H GY TA+H+Q + + GP+ +HR T Sbjct: 133 SRSAAIAAASVLAKEARDALIRRLSARFPGYGLERHAGYGTAQHRQSLIDSGPTPLHRHT 192 Query: 201 FRPLRNLS 208 F L+ L Sbjct: 193 F--LKRLL 198 >gi|307637994|gb|ADN80444.1| Ribonuclease H II [Helicobacter pylori 908] gi|325996599|gb|ADZ52004.1| Ribonuclease HII [Helicobacter pylori 2018] gi|325998189|gb|ADZ50397.1| Ribonuclease HII [Helicobacter pylori 2017] Length = 191 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 88/187 (47%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG L G + VA ++ + G+ DSKK+S KKR L KI + Sbjct: 4 GIDEAGRGCLVGSLFVAGVVCGGKTALEFLEMGLKDSKKLSPKKRFFLENKIKTHDEVEF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S + ID + AI VEN + IDG + +IKG Sbjct: 64 FVVKKSAEAIDHLGLGACLKLAIQEIVENGCSLANEIKIDGNTAFGLNKRYPNIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 124 DETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|328885537|emb|CCA58776.1| Ribonuclease HII [Streptomyces venezuelae ATCC 10712] Length = 236 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 74/200 (37%), Positives = 105/200 (52%), Gaps = 5/200 (2%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK I+ K Sbjct: 4 EPPTHTVERSLRATTGAKIVAGVDEVGRGAWAGPVTVCAAVTGLRRAPEGLTDSKLITPK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R L ++ ++ AS Q ID+ + A A A+E L V P + ++DG+ Sbjct: 64 RRTTLAAELEGWVTAYALGDASPQEIDELGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTA 182 P Q VIKGD +++AAAS+IAKV RD M Y Y F ++ GYP+ Sbjct: 124 YLGGPWQVRTVIKGDQSCIAVAAASVIAKVRRDAFMAELETSAGDYAAYAFGANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFR 202 H+ ++E GP+ HRL++ Sbjct: 184 VHKAALEELGPTPHHRLSWS 203 >gi|93006331|ref|YP_580768.1| ribonuclease H [Psychrobacter cryohalolentis K5] gi|122415238|sp|Q1QAL9|RNH2_PSYCK RecName: Full=Ribonuclease HII; Short=RNase HII gi|92394009|gb|ABE75284.1| RNase HII [Psychrobacter cryohalolentis K5] Length = 286 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 94/219 (42%), Gaps = 39/219 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILD------------PNNIPFGINDSKKISHKKREELYEK 74 G+DE GRG L G V VA+ IL + + DSK++S KKR+ LY Sbjct: 64 IGVDEAGRGPLLGSVNVASAILPRAWSGLIEGQPLKDTPLSILTDSKQLSEKKRDMLYPL 123 Query: 75 ITSSAI-ISISSASHQYIDKHNIHKATLDAIYHA---------VENLQVIPRSALIDGRS 124 + AI I+ ID+ NI +AT+ + + + Sbjct: 124 VQQHAIGYVIADIPAAVIDQVNILQATMLGMRLCTEVMLEVIAYHLNDMAQDVHQLHAEV 183 Query: 125 IPEDLPCQ-----------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + C A IKGD+ SIAAASI+AKV+RD+ M + Sbjct: 184 LFDGNRCPELNYARLVELGVEEKVDCQAWIKGDARHTSIAAASILAKVSRDKTMYALDAQ 243 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 +P+YG H GYPT H + I+ G HR +F P+R Sbjct: 244 HPEYGIAKHKGYPTRAHMEAIETYGVLAAHRRSFAPVRK 282 >gi|288962307|ref|YP_003452602.1| ribonuclease HII [Azospirillum sp. B510] gi|288914573|dbj|BAI76058.1| ribonuclease HII [Azospirillum sp. B510] Length = 221 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 82/215 (38%), Positives = 110/215 (51%), Gaps = 29/215 (13%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAG---------------PVVVAAIILDPNN 52 +RP LEA V GIDEVGRG L G P + A Sbjct: 14 QRPDLSLEAGFGA--GRRVCGIDEVGRGPLCGPVVAAAVVLPAEGLPPEIAA-------- 63 Query: 53 IPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENL 111 I+DSK ++ + REE+ I + A +I+ AS ID+ NIH+ATL A+ A E L Sbjct: 64 ---QIDDSKAVTRRLREEIEPAIRAHALAFAIAEASAAEIDELNIHRATLLAMRRAYEAL 120 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 +P A + D+ C+ AV+KGDS SLSIAAASI+AKV RD M YP Y Sbjct: 121 PGVPPDAALIDGKFTPDIACERVAVVKGDSRSLSIAAASILAKVARDSEMLRLSAVYPHY 180 Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 G+D + GYPT +H + G + HR++F P++ Sbjct: 181 GWDRNAGYPTPEHLDALTRHGVTPHHRVSFAPVKR 215 >gi|294786711|ref|ZP_06751965.1| ribonuclease HII [Parascardovia denticolens F0305] gi|294485544|gb|EFG33178.1| ribonuclease HII [Parascardovia denticolens F0305] Length = 240 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 34/229 (14%) Query: 10 PHFELEAMVRE----KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDS 60 P +++E + + + + G DEVGRG LAGPV+V A + +IP G+ DS Sbjct: 12 PSWQVEEALLQEADDRRPQWIIGCDEVGRGCLAGPVMVGACLFRAEDIPLLPIPAGLKDS 71 Query: 61 KKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAV----------- 108 K ++ KKRE L + + +A ++ S ++ ID + I +A A A+ Sbjct: 72 KLLTPKKRESLLDPLRAWAAGTAVGSCDNRGIDSYGIMEALGAAAIQAIDQAVFGLIGAG 131 Query: 109 ----------ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD 158 + +L+ ++ + V+KGD +A AS+IAKVTRD Sbjct: 132 DRVAVILDGPYDYISPAFRSLLAPQARIDPDDMTVTTVVKGDRRCACVAGASVIAKVTRD 191 Query: 159 RLMRIAHKKYPD---YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 R M ++P+ Y + + GY +A+H++ IKE+GPS HRL++ + Sbjct: 192 RYMVDLADRHPEWEAYAWRKNKGYGSAEHREAIKEQGPSPYHRLSWHLV 240 >gi|319760422|ref|YP_004124360.1| ribonuclease HII [Candidatus Blochmannia vafer str. BVAF] gi|318039136|gb|ADV33686.1| ribonuclease HII [Candidatus Blochmannia vafer str. BVAF] Length = 208 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 81/189 (42%), Positives = 108/189 (57%), Gaps = 6/189 (3%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKITSSA 79 +AG+DEVG GAL GP++ +A+I P N G+ DSK ++ KKR +LY+ I + Sbjct: 16 LIAGVDEVGCGALMGPIIASAVIFPPFNNQKKINVAGLVDSKTLNSKKRVKLYKDIQKYS 75 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 SI S IDK N+ KA L A+ AV NL +IP L+DG P IK Sbjct: 76 LSWSIGVVSVSEIDKLNVLKARLLAMKRAVLNLSIIPDLILVDGNKAPFFKNIFYQCFIK 135 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD I+AASIIAKV RDR M I + +YP YG + + GYPT H Q + GP+ HR Sbjct: 136 GDVYIPIISAASIIAKVIRDRAMIILNTQYPQYGLNHNKGYPTNFHIQQLYFYGPTIYHR 195 Query: 199 LTFRPLRNL 207 TF P++++ Sbjct: 196 KTFSPVKHM 204 >gi|170079067|ref|YP_001735705.1| ribonuclease HII [Synechococcus sp. PCC 7002] gi|169886736|gb|ACB00450.1| ribonuclease HII [Synechococcus sp. PCC 7002] Length = 200 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 77/183 (42%), Positives = 107/183 (58%), Gaps = 5/183 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAA----IILDPNNIPFGINDSKKISHKKREELYEKITSSA- 79 +AG+DEVGRG L GPVV A I + G+ DSKK+S K+RE L +I + Sbjct: 3 LLAGVDEVGRGCLFGPVVAAVVVVNTIQEQALGELGVTDSKKLSAKRRETLVPQIQALVT 62 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 +I+SAS ID+ NI +AT A+ AVE LQ+ P +DGR L A+I+G Sbjct: 63 DWAIASASVAEIDQLNILQATFLAMTRAVEKLQIKPTEIFVDGRQTIPKLNYPQQAIIQG 122 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS +IAAASI+AKV RD+ + + YP+Y ++ GY T KH+Q I + G + HR Sbjct: 123 DSKVKAIAAASILAKVQRDQDIIQLAEHYPEYDLANNKGYGTQKHRQAIWQYGLTPHHRQ 182 Query: 200 TFR 202 +F+ Sbjct: 183 SFK 185 >gi|163846616|ref|YP_001634660.1| ribonuclease HII [Chloroflexus aurantiacus J-10-fl] gi|222524413|ref|YP_002568884.1| ribonuclease HII [Chloroflexus sp. Y-400-fl] gi|189043577|sp|A9WIH1|RNH2_CHLAA RecName: Full=Ribonuclease HII; Short=RNase HII gi|254807970|sp|B9LAL2|RNH2_CHLSY RecName: Full=Ribonuclease HII; Short=RNase HII gi|163667905|gb|ABY34271.1| Ribonuclease H [Chloroflexus aurantiacus J-10-fl] gi|222448292|gb|ACM52558.1| Ribonuclease H [Chloroflexus sp. Y-400-fl] Length = 212 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 67/211 (31%), Positives = 95/211 (45%), Gaps = 27/211 (12%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAG----------------PVVVAAIILDPNNI 53 P +E ++ + +AGIDE GRG AG P ++ Sbjct: 3 PDLSIEHDLQRRGYANLAGIDEAGRGCWAGPVVAAAVVLSPAVYRQP-----------DL 51 Query: 54 PFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113 G+NDSK+++ RE +Y I + A+ ++ Sbjct: 52 LAGVNDSKQLTAGARERIYTSIQTHALGVGVGIVPAFLIDAYGILPATRLAMIQALLALP 111 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 ALI + A+++GD SLSIAAASIIAKVTRDRLM A +P YGF Sbjct: 112 CAVDALIIDAVQLPGISLPQTALVRGDERSLSIAAASIIAKVTRDRLMATADHCFPHYGF 171 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 H GY TA H++ + + GPS +HR TF+P+ Sbjct: 172 ALHKGYGTAVHRRALAQYGPSPLHRRTFQPV 202 >gi|306845020|ref|ZP_07477601.1| ribonuclease HII [Brucella sp. BO1] gi|306274652|gb|EFM56441.1| ribonuclease HII [Brucella sp. BO1] Length = 194 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 93/188 (49%), Positives = 131/188 (69%), Gaps = 2/188 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ +RE LYE I + A Sbjct: 2 KRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILAKA 61 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I +S++S S + ID +I KA L+A+ AV L + P AL+DGR +P LPC A++K Sbjct: 62 ITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IH 197 GD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH+ I+ +GP +H Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKHRAAIESEGPVPGLH 181 Query: 198 RLTFRPLR 205 R TF P++ Sbjct: 182 RYTFAPIK 189 >gi|111225146|ref|YP_715940.1| ribonuclease HII [Frankia alni ACN14a] gi|123043979|sp|Q0RDP7|RNH2_FRAAA RecName: Full=Ribonuclease HII; Short=RNase HII gi|111152678|emb|CAJ64419.1| Endoribonuclease H. RNase H (RnhB) [Frankia alni ACN14a] Length = 241 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 3/196 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN---NIPFGINDSKKISHKKR 68 F E + + PVAG+DE GRGA AGP+VVAA++L P+ + + DSK ++ + R Sbjct: 15 FGYERALVRCGLGPVAGVDEAGRGACAGPLVVAAVVLGPDGRRRLSPRLADSKLLTEQVR 74 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E L++++ +A + ++ Sbjct: 75 EGLFDEVLRAAADWSAVVIPAAEIDRTGVHVANITGMRRAVARLGHRPGYVLTDGFAVAG 134 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 ++ AV+KGD ++ IAAASI+AKVTRDR+MR H +Y +Y F H GY TA H + Sbjct: 135 FGTESLAVVKGDRVAACIAAASIVAKVTRDRIMRALHTRYAEYDFAQHKGYVTAAHAAAL 194 Query: 189 KEKGPSCIHRLTFRPL 204 GP HR ++ + Sbjct: 195 ARYGPCDEHRKSYVNV 210 >gi|237750687|ref|ZP_04581167.1| ribonuclease HII [Helicobacter bilis ATCC 43879] gi|229373777|gb|EEO24168.1| ribonuclease HII [Helicobacter bilis ATCC 43879] Length = 207 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 10/195 (5%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREEL 71 + NM + GIDE GRG +AG + +A+++LD + I DSK+++ +R+E Sbjct: 4 QVYWAINMALICGIDEAGRGCVAGSLFIASVMLDECYFESFKKLDIRDSKQLTQTQRQER 63 Query: 72 YEKIT-----SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 + I + I S ID + + + + + + ++I + Sbjct: 64 ADSIQEFLREHGGRVKIVSFDSVNIDSKGLGQCMQMGLKELLLHAKKHQCKSIIFDGNTN 123 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + + +IKGDS + I+AASI+AK +D M H YP Y S+ GY T H + Sbjct: 124 FGVQ-EIDTLIKGDSKHVLISAASILAKTNKDSEMLTLHDLYPQYNLKSNKGYLTKAHIE 182 Query: 187 VIKEKGPSCIHRLTF 201 I + G S IHR ++ Sbjct: 183 SIAKHGYSPIHRKSY 197 >gi|254527238|ref|ZP_05139290.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9202] gi|221538662|gb|EEE41115.1| ribonuclease HII [Prochlorococcus marinus str. MIT 9202] Length = 205 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 72/188 (38%), Positives = 104/188 (55%), Gaps = 7/188 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAII 81 GIDEVGRGA+ GPV A ++L N G+ DSKK++ KKR+ L KI S+ Sbjct: 19 VGIDEVGRGAIFGPVFSAVVVLTEKNKFLLKQLGVKDSKKLTPKKRKFLVPKILLLSSDY 78 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I +S + ID I AT ++ A++ L+ P ++DG + ++ GDS Sbjct: 79 GIGQSSVKEIDNLGIRVATELSMIRALKKLKEKPSELIVDGPLLLRPWSGTQKNIVSGDS 138 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SIA+ASIIAKV+RD LM KKY Y + GY T +H +IK G + +HR +F Sbjct: 139 KFISIASASIIAKVSRDNLMMKLEKKYSGYLIFKNKGYGTREHLSLIKRNGVTNLHRKSF 198 Query: 202 RPLRNLSV 209 L+ L++ Sbjct: 199 --LKKLNL 204 >gi|291448253|ref|ZP_06587643.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998] gi|291351200|gb|EFE78104.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998] Length = 236 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 74/200 (37%), Positives = 108/200 (54%), Gaps = 5/200 (2%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A I P G+ DSK ++ + Sbjct: 4 EPPTHTVERSIRATTGARTVAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTPR 63 Query: 67 KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL + S + AS Q ID + A A A+E L V P + ++DG+ Sbjct: 64 RRAELEPVLRSWVTACALGDASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTA 182 P + VIKGD +++AAAS+IAKV RDR+M + + FD++ GYP+ Sbjct: 124 YLGAPWKVRTVIKGDQSCIAVAAASVIAKVHRDRMMAELGAASEDCGGFAFDANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFR 202 H+ ++E+GP+ HRL++ Sbjct: 184 VHRAALEERGPTVHHRLSWS 203 >gi|326776139|ref|ZP_08235404.1| Ribonuclease H [Streptomyces cf. griseus XylebKG-1] gi|326656472|gb|EGE41318.1| Ribonuclease H [Streptomyces cf. griseus XylebKG-1] Length = 236 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 72/200 (36%), Positives = 109/200 (54%), Gaps = 5/200 (2%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R VAG+DEVGRGA AGPV V A + P G+ DSK ++ + Sbjct: 4 EPPTHTVERSLRATTGARTVAGVDEVGRGAWAGPVTVCAAVTGLRRPPEGLTDSKLLTPR 63 Query: 67 KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R E+ + S + AS Q ID + A A A+E L V P + ++DG+ Sbjct: 64 RRAEIDPVLRSWVTAHALGDASPQEIDDLGMTAALRLAAVRALEGLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTA 182 +P + VIKGD +++AAAS+IAKV RDR+M + D+ F ++ GYP+ Sbjct: 124 YLGVPWKVRTVIKGDQSCIAVAAASVIAKVHRDRMMAELGAASEDCADFDFGANAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFR 202 H+ ++E+GP+ HRL++ Sbjct: 184 VHRAALEERGPTAHHRLSWA 203 >gi|302542045|ref|ZP_07294387.1| ribonuclease HII [Streptomyces hygroscopicus ATCC 53653] gi|302459663|gb|EFL22756.1| ribonuclease HII [Streptomyces himastatinicus ATCC 53653] Length = 233 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 70/197 (35%), Positives = 106/197 (53%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 + P +E +R V G+DEVGRGA AGPV V A + P G+ DSK +S K Sbjct: 4 QPPTHSVERSLRATTGAKIVVGVDEVGRGAWAGPVTVCAAVTGLRRPPTGLTDSKLLSPK 63 Query: 67 KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL ++ S + +S + ID + A A A+E L V P + ++DG+ Sbjct: 64 RRTELAHELESWVTAHALGHSSPEEIDDLGMTAALRLAATRALEGLPVRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P + VIKGD +++AAAS+IAKV RD LM + D+ F + GYP+ H+ Sbjct: 124 YLGAPWRVRTVIKGDQSCVAVAAASVIAKVRRDALMAELGGAHADFRFGDNAGYPSPVHR 183 Query: 186 QVIKEKGPSCIHRLTFR 202 ++++GP+ HRL++ Sbjct: 184 AALRDQGPTPHHRLSWA 200 >gi|171741370|ref|ZP_02917177.1| hypothetical protein BIFDEN_00451 [Bifidobacterium dentium ATCC 27678] gi|283455277|ref|YP_003359841.1| ribonuclease [Bifidobacterium dentium Bd1] gi|171276984|gb|EDT44645.1| hypothetical protein BIFDEN_00451 [Bifidobacterium dentium ATCC 27678] gi|283101911|gb|ADB09017.1| Putative ribonuclease [Bifidobacterium dentium Bd1] Length = 234 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 33/225 (14%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61 P +LE + + + G DEVGRG+LAGPV+V A + D ++P G+ DSK Sbjct: 7 PTLQLEREIAARGYDVIVGFDEVGRGSLAGPVMVGAAAIRTADLDGPDALDVPEGVADSK 66 Query: 62 KISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA--------------------T 100 ++ +RE ++E + SA ++ ++S+ ID+ I A Sbjct: 67 MLTEHRRETIFESLKSWSASWAVGASSNAEIDEWGISYALGVAALRALDEVERELGIADD 126 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ--AFAVIKGDSISLSIAAASIIAKVTRD 158 I G D+P +KGD ++A A++IAKVTRD Sbjct: 127 GRPIRVGAILDGPNDYITKALGTFDAPDVPVPATVTTKVKGDRYCATVATAAVIAKVTRD 186 Query: 159 RLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RLM + +Y Y + + GY +A H++ I GPS +HR+++ Sbjct: 187 RLMIELGERPEYAIYEWQRNKGYGSAAHREAIAAHGPSDLHRISW 231 >gi|218245925|ref|YP_002371296.1| Ribonuclease H [Cyanothece sp. PCC 8801] gi|257058973|ref|YP_003136861.1| ribonuclease H [Cyanothece sp. PCC 8802] gi|218166403|gb|ACK65140.1| Ribonuclease H [Cyanothece sp. PCC 8801] gi|256589139|gb|ACV00026.1| Ribonuclease H [Cyanothece sp. PCC 8802] Length = 205 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 80/190 (42%), Positives = 107/190 (56%), Gaps = 13/190 (6%) Query: 24 WPVAGIDEVGRGALAGPVV--------VAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 +AG+DEVGRG L GPVV + L G+ DSK++S KKR +L ++I Sbjct: 12 TLIAGVDEVGRGTLFGPVVAAVVVIPVSSTTYL----QEIGVKDSKQLSAKKRLKLAQEI 67 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 A IS AS + ID+ NI +A+L A+ AV +L V P L+DGR DL Sbjct: 68 KIVAKGYHISYASVKEIDRLNILQASLLAMKRAVLHLSVEPAICLVDGRQKIPDLTIPQQ 127 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +I GD +S IAAASI+AKV RD L+ KYP Y ++ GY T KH+ +++ G S Sbjct: 128 TIIGGDRLSPIIAAASILAKVWRDELIIRLDAKYPQYDLANNKGYGTLKHRLALEKYGVS 187 Query: 195 CIHRLTFRPL 204 HRL+FRP Sbjct: 188 PQHRLSFRPC 197 >gi|306837307|ref|ZP_07470190.1| ribonuclease HII [Brucella sp. NF 2653] gi|306407620|gb|EFM63816.1| ribonuclease HII [Brucella sp. NF 2653] Length = 194 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 93/188 (49%), Positives = 130/188 (69%), Gaps = 2/188 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 ++ +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ +RE LYE I + A Sbjct: 2 KRGSKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILAKA 61 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I +S++S S + ID +I KA L+A+ AV L + P AL+DGR +P LPC A++K Sbjct: 62 IAVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IH 197 GD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH+ I+ +GP +H Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYGTQKHRAAIESEGPVPGLH 181 Query: 198 RLTFRPLR 205 R TF P++ Sbjct: 182 RYTFAPIK 189 >gi|255603855|ref|XP_002538125.1| ribonuclease hii, putative [Ricinus communis] gi|223513694|gb|EEF24259.1| ribonuclease hii, putative [Ricinus communis] Length = 168 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 89/168 (52%), Gaps = 4/168 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-II 81 M + GIDE GRG LAG V AA+IL+P G+ DSKK+S KR+ L +I + A Sbjct: 1 MQRLCGIDEAGRGPLAGAVYAAAVILNPERPIAGLADSKKLSEAKRDALAIEIKAHALAW 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID---GRSIPEDLPCQAFAVIK 138 I+S S Q ID+ NI +A+L A+ A + + + A++K Sbjct: 61 GIASVSAQEIDEINILQASLLAMQRAYQAMVEQFGLHATLIQVDGNRCPKFELPCEAIVK 120 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 GDS I+AASI+AK RD + + +YP YGF H GYPTA H Sbjct: 121 GDSKVAEISAASILAKTARDASLLVLDAEYPQYGFAQHKGYPTALHLA 168 >gi|254391049|ref|ZP_05006257.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064] gi|294815520|ref|ZP_06774163.1| Ribonuclease [Streptomyces clavuligerus ATCC 27064] gi|326443870|ref|ZP_08218604.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064] gi|197704744|gb|EDY50556.1| ribonuclease HII [Streptomyces clavuligerus ATCC 27064] gi|294328119|gb|EFG09762.1| Ribonuclease [Streptomyces clavuligerus ATCC 27064] Length = 235 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 74/197 (37%), Positives = 110/197 (55%), Gaps = 2/197 (1%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R + +AG+DEVGRGA AGPV V A I P G+ DSK IS + Sbjct: 4 EPPTHTVERSIRARTGARIIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLISPR 63 Query: 67 KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R+EL ++ + AS Q ID + A A A++ L V P + ++DG+ Sbjct: 64 RRDELAAELERWVTAHALGHASPQEIDDLGMTAALRLAACRALDGLPVRPEAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 P VIKGD +++AAAS+IAKV RD LM +++ D+ F + GYP+ H+ Sbjct: 124 YLGAPWTVRTVIKGDRSCVAVAAASVIAKVRRDALMAELPQEFADFAFADNAGYPSPVHK 183 Query: 186 QVIKEKGPSCIHRLTFR 202 V++E+GP+ HRL++ Sbjct: 184 AVLEERGPTPYHRLSWA 200 >gi|289523589|ref|ZP_06440443.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503281|gb|EFD24445.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 193 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 76/183 (41%), Positives = 103/183 (56%), Gaps = 5/183 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS-A 79 V G+DE GRG LAGPVV AA+ + G+ DSK +S K+REE++ + Sbjct: 2 IVVGVDEAGRGPLAGPVVAAAVAATREKMSLLKSVGVTDSKALSSKRREEIFLLLRRYGF 61 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 I +A+ +ID+ NI +ATL A+ AV +L + P ++DG LP A+ K Sbjct: 62 IYRAQAANPWFIDRANILQATLWAMEKAVSSLSLSPDIVIVDGNQKIPGLPFPQKALPKA 121 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D L + AASI+AKV RDR+M K YP YGF H GYPT +H+ + G S IHR Sbjct: 122 DKNVLVVGAASIVAKVIRDRVMCAYDKLYPGYGFAVHKGYPTKEHRIALALMGASPIHRK 181 Query: 200 TFR 202 TF+ Sbjct: 182 TFK 184 >gi|306823660|ref|ZP_07457035.1| ribonuclease HII [Bifidobacterium dentium ATCC 27679] gi|309802965|ref|ZP_07697066.1| ribonuclease HII [Bifidobacterium dentium JCVIHMP022] gi|304553367|gb|EFM41279.1| ribonuclease HII [Bifidobacterium dentium ATCC 27679] gi|308220432|gb|EFO76743.1| ribonuclease HII [Bifidobacterium dentium JCVIHMP022] Length = 234 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 33/225 (14%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFGINDSK 61 P +LE + + + G DEVGRG+LAGPV+V A + D ++P G+ DSK Sbjct: 7 PTLQLEREIAARGYDVIVGFDEVGRGSLAGPVMVGAAAIRTADLDGPDALDVPEGVADSK 66 Query: 62 KISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA--------------------T 100 ++ +RE ++E + SA ++ ++S+ ID+ I A Sbjct: 67 MLTEHRRETIFESLKSWSASWAVGASSNAEIDEWGISYALGVAALRALDEVERELGIADD 126 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ--AFAVIKGDSISLSIAAASIIAKVTRD 158 +I G D+P +KGD ++A A++IAKVTRD Sbjct: 127 GRSIRVGAILDGPNDYITKALGTFDAPDVPVPATVTTKVKGDRYCATVATAAVIAKVTRD 186 Query: 159 RLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RLM + +Y Y + + GY +A H++ I GPS +HR+++ Sbjct: 187 RLMIELGERPEYAIYEWQRNKGYGSAAHREAIAAHGPSDLHRISW 231 >gi|108804231|ref|YP_644168.1| RNase HII [Rubrobacter xylanophilus DSM 9941] gi|108765474|gb|ABG04356.1| RNase HII [Rubrobacter xylanophilus DSM 9941] Length = 204 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 66/194 (34%), Positives = 102/194 (52%), Gaps = 5/194 (2%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + +A PVAG+DE GRGALAGP+V AA+ILD + G++DSK+++ RE L Sbjct: 13 YAFDAAWAASRRPPVAGVDEAGRGALAGPLVAAAVILD-GGVVEGLDDSKRLARPARERL 71 Query: 72 YEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ SA S+ +ID+H + A + + AV L L DG Sbjct: 72 LPEVLGSAEALSVVVFPAWWIDEHGLGAANREVLRRAVGRLLPRAGCCLADGNLRLGP-- 129 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 + + D S ++AAAS++AKV RD M +P YGF+ + GY T +H++ + Sbjct: 130 -RIDCLPGADGRSAAVAAASVVAKVLRDAAMSALGAAHPGYGFERNCGYGTPEHRRALAR 188 Query: 191 KGPSCIHRLTFRPL 204 GP +HRL++ + Sbjct: 189 LGPCRVHRLSYAGV 202 >gi|83594539|ref|YP_428291.1| ribonuclease HII [Rhodospirillum rubrum ATCC 11170] gi|97189243|sp|Q2RPE1|RNH2_RHORT RecName: Full=Ribonuclease HII; Short=RNase HII gi|83577453|gb|ABC24004.1| Ribonuclease H [Rhodospirillum rubrum ATCC 11170] Length = 218 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 78/202 (38%), Positives = 109/202 (53%), Gaps = 11/202 (5%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISH 65 P LE VAG+DEVGRG LAGPVV AA+++D ++DSKK+S Sbjct: 2 PDLSLERACG----GRVAGVDEVGRGPLAGPVVAAAVVIDAGRADPALLARLDDSKKLSA 57 Query: 66 KKREELYEKITSSAIISIS--SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 R+ L + + + + AS ID+ NI +AT A+ A+ L AL+DG Sbjct: 58 ALRQRLATALLADPGVEVGLGEASVAEIDRINILQATFLAMGRALAKLAPPVDLALVDGN 117 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +P C AV++GD +SLSIAAASI+AKV RD M + P YG++ + GY TA+ Sbjct: 118 RLPPLP-CPGQAVVRGDGLSLSIAAASIVAKVHRDAAMATLAQALPGYGWERNAGYGTAE 176 Query: 184 HQQVIKEKGPSCIHRLTFRPLR 205 H + G + HR +F P+R Sbjct: 177 HLAALDRLGATPHHRASFAPVR 198 >gi|189023629|ref|YP_001934397.1| ribonuclease HII [Brucella abortus S19] gi|189019201|gb|ACD71923.1| Ribonuclease HII/HIII [Brucella abortus S19] Length = 194 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 93/188 (49%), Positives = 131/188 (69%), Gaps = 2/188 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 ++ + +AGIDE GRG LAGPVV AA++LD N++P G++DSK+++ +RE LYE I + A Sbjct: 2 KRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLPEGLDDSKRLTAARREALYEIILTKA 61 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 I +S++S S + ID +I KA L+A+ AV L + P AL+DGR +P LPC A++K Sbjct: 62 ITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRDVPPGLPCPGSALVK 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC-IH 197 GD S+SIAAASI+AKVTRDR+M A +P YG + H GY T KH+ I+ +GP +H Sbjct: 122 GDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQKHRAAIESEGPVPGLH 181 Query: 198 RLTFRPLR 205 R TF P++ Sbjct: 182 RYTFAPIK 189 >gi|308177303|ref|YP_003916709.1| ribonuclease HII [Arthrobacter arilaitensis Re117] gi|307744766|emb|CBT75738.1| ribonuclease HII [Arthrobacter arilaitensis Re117] Length = 241 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 22/213 (10%) Query: 11 HFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG--INDSKKISHKK 67 E E + K + +A +DEVGRGALAGP+ V ++D + + DSK +S Sbjct: 10 TLEHERALAAKHGVRYIAAVDEVGRGALAGPITVGMTVIDIQQVTEFPALRDSKLLSPDT 69 Query: 68 REELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 R L + + A+ + AS ID+ + A A A+ + P +AL+DG Sbjct: 70 RMALVDPVRQWAVGYGVGHASATEIDELGVTGALRLAGSRAMVQCAIQPEAALLDGSYDW 129 Query: 127 ------------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 L ++KGD +IA ASI+AKV RD +M ++ Sbjct: 130 LTAPEPDLFDILADDREPVGLRIPVATIVKGDMTCQAIAGASILAKVERDVIMVGLATEH 189 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 PD+G++ + GY TA H+ I +GP HR ++ Sbjct: 190 PDFGWEINKGYATAAHRAAIVAQGPCDYHRKSW 222 >gi|154486645|ref|ZP_02028052.1| hypothetical protein BIFADO_00464 [Bifidobacterium adolescentis L2-32] gi|154084508|gb|EDN83553.1| hypothetical protein BIFADO_00464 [Bifidobacterium adolescentis L2-32] Length = 238 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 43/240 (17%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFG 56 S+ P ++E + + G DEVGRG+LAGPV+V A + P +P G Sbjct: 2 SVSIVPTLDMERAIAASGYDVIVGFDEVGRGSLAGPVMVGAAAIRTCDLAGSSPLQVPDG 61 Query: 57 INDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 + DSK ++ +RE ++E++ A ++ SAS+ ID I A A A+ Sbjct: 62 VADSKMLTEHRREAIFEELKSWCASWAVGSASNTEIDDWGISYALGIAALRAL---GQAE 118 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA---------------------- 153 IDG + + P + A++ G + ++ A + A Sbjct: 119 EKLGIDGDGMLDGKPVKVGAILDGPNDYITKALNTFDAPDVPVPAEVSTKVKGDRYCATV 178 Query: 154 -------KVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 KVTRDRLM +Y Y + + GY +A H+ I E GPS +HRL++ + Sbjct: 179 ATAAVIAKVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHRLSWHLV 238 >gi|116328318|ref|YP_798038.1| ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331044|ref|YP_800762.1| ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121062|gb|ABJ79105.1| Ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124733|gb|ABJ76004.1| Ribonuclease H [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 223 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 75/195 (38%), Positives = 99/195 (50%), Gaps = 20/195 (10%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP--------FGINDSKKISHKKREELYEKITSS 78 GIDE GRG AGP+ VA + N + G+ DSKK+S KKRE LY +I Sbjct: 23 CGIDEAGRGPYAGPLSVALVSFSQNTLHQILEGKLLKGLTDSKKLSEKKREALYPEILKI 82 Query: 79 AIISISSA-SHQYIDKHNIHKATLDAIYHAVEN-----------LQVIPRSALIDGRSIP 126 A IS + S YID+ I++A L+ I + +I + + Sbjct: 83 AQISCQTFLSPNYIDREGINRAVLEGIRKCAKMAIRGVSSTLPLQLLIDGNYNFNRYPEW 142 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 ++ KGD +SIAAASI+AKV+RDR M KKYPDY FD H GY T H++ Sbjct: 143 NYFKNRSSFYTKGDLRIVSIAAASILAKVSRDRYMTSISKKYPDYRFDRHKGYGTKLHEE 202 Query: 187 VIKEKGPSCIHRLTF 201 +I G S IHR +F Sbjct: 203 LILRYGLSDIHRRSF 217 >gi|312879567|ref|ZP_07739367.1| RNase HII [Aminomonas paucivorans DSM 12260] gi|310782858|gb|EFQ23256.1| RNase HII [Aminomonas paucivorans DSM 12260] Length = 189 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 72/183 (39%), Positives = 103/183 (56%), Gaps = 5/183 (2%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS-A 79 VAG DE GRG LAGPVV AA +L P+ + G+ DSK ++ ++RE L+ + Sbjct: 2 IVAGTDEAGRGPLAGPVVAAAAVLTPDQRRRLMQRGLGDSKALTPRRRESLFALMEELGV 61 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + +AS ID NI A+L A+ A L P ++DG + L + G Sbjct: 62 LWRAQAASAARIDGTNILAASLWAMGRATVALDPPPDLVVVDGNARIPGLSLPQRCLPGG 121 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D++ ++ AAS++AKV RDR M + YP YGF H GYPTA+H++ ++ GPS +HR Sbjct: 122 DALVPAVMAASVVAKVLRDRAMESLDRLYPGYGFAKHKGYPTAEHRRALERLGPSPVHRA 181 Query: 200 TFR 202 TFR Sbjct: 182 TFR 184 >gi|46203286|ref|ZP_00051740.2| COG0164: Ribonuclease HII [Magnetospirillum magnetotacticum MS-1] Length = 200 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 75/188 (39%), Positives = 106/188 (56%), Gaps = 5/188 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYE 73 R V G DEVGRGAL+GPV+VAA+ DP P + +DSK++ R L Sbjct: 7 ARAATYPAVIGCDEVGRGALSGPVMVAAVWFDPLAFPPELLARLDDSKRLDKATRTALTP 66 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I S A ++++++S + +D+ N+ ATLDA+ AV L + L+DGR L Sbjct: 67 LIRSHARVALAASSRRLVDRINVRAATLDAMRRAVTRLGLDAP-VLVDGRDTIPGLTQTC 125 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 AVI GD + IAAASIIAK RD +MR ++P YG++ + GY TA H + +G Sbjct: 126 RAVIGGDRLVPQIAAASIIAKTLRDDIMRRLAPRHPAYGWERNAGYGTAVHLAGLSAQGC 185 Query: 194 SCIHRLTF 201 S HR++F Sbjct: 186 SPHHRVSF 193 >gi|184200715|ref|YP_001854922.1| ribonuclease HII [Kocuria rhizophila DC2201] gi|183580945|dbj|BAG29416.1| ribonuclease HII [Kocuria rhizophila DC2201] Length = 266 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 37/236 (15%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD------------- 49 + RP +LE + VAG+DEVGRGALAGP V ++LD Sbjct: 26 VSPARPRPGLDLETELASSGARFVAGMDEVGRGALAGPASVGLVVLDVPRLLAGSGHDAA 85 Query: 50 -PNNIP------FGINDSKKISHKKREELYEKI-TSSAIISISSASHQYIDKHNIHKATL 101 P+ P G+ DSK +S +R L ++ T +A ++ A ID I A Sbjct: 86 APDPAPVSVPAWDGVRDSKALSAARRAVLAPRVATWAAGTAVGHAQPHEIDALGITAALR 145 Query: 102 DAIYHAVE----------------NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 A A+ + + A++ P LP ++K D+ +S Sbjct: 146 LAGLRALAAVTSGGTPVDALILDGSHNWLEAPAVLGQEEDPVALPPVVRTLVKADARCVS 205 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +AAASI+AKV RD +M +++P Y + ++ GY +A H+ + G + HR ++ Sbjct: 206 VAAASIVAKVERDAIMVELGQEHPAYEWGANKGYGSAAHRAALVTHGTTRHHRRSW 261 >gi|258542064|ref|YP_003187497.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01] gi|256633142|dbj|BAH99117.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01] gi|256636199|dbj|BAI02168.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-03] gi|256639254|dbj|BAI05216.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-07] gi|256642308|dbj|BAI08263.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-22] gi|256645363|dbj|BAI11311.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-26] gi|256648418|dbj|BAI14359.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-32] gi|256651471|dbj|BAI17405.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654462|dbj|BAI20389.1| ribonuclease HII [Acetobacter pasteurianus IFO 3283-12] Length = 215 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 81/212 (38%), Positives = 109/212 (51%), Gaps = 30/212 (14%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAG-------------PVVVAAIILDPNNIPFG 56 P F E + VAG+DEVGRG LAG P +AA+I Sbjct: 7 PDFTREQQLG----GRVAGVDEVGRGPLAGPVVAAAVVFGAGVPADLAAVI--------- 53 Query: 57 INDSKKISHKKREELYEKITSSAIISISSASH--QYIDKHNIHKATLDAIYHAVENLQVI 114 +DSKK+ RE + E++ I I + IDK NIH A A+ AV L + Sbjct: 54 -DDSKKLKPAVREAIAERLPQVPGIEIGIGAASTAEIDKLNIHHAAHLAMQRAVGRLPRL 112 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 P L+DG +P D C A A++ GD +SLSIAAASI+AKV RDR M ++PDYG++ Sbjct: 113 PDHVLVDGNKLP-DFGCDAQAIVGGDRVSLSIAAASIVAKVVRDRAMARLDARWPDYGWE 171 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 + GY TA H++ + G + HR TF +R Sbjct: 172 KNAGYGTAVHRKALISVGITPHHRKTFGTVRR 203 >gi|188580997|ref|YP_001924442.1| ribonuclease H [Methylobacterium populi BJ001] gi|179344495|gb|ACB79907.1| Ribonuclease H [Methylobacterium populi BJ001] Length = 232 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 75/188 (39%), Positives = 103/188 (54%), Gaps = 5/188 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYE 73 R V G DEVGRGAL GPV+VAA+ DP P I +DSK++ RE L Sbjct: 27 ARAATYPAVIGCDEVGRGALCGPVMVAAVWFDPLAFPAEILARLDDSKRLDRATREALTP 86 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A +S+++ S +D+ N+ ATLDA+ AV L + L+DGR L Sbjct: 87 LIRAHARVSLAAGSRALVDRVNVRGATLDAMRRAVAGLGLDAA-VLVDGRDGIPGLVQPC 145 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 AV+ GD + IAAASI+AK RD LMR ++P Y ++ + GY TA H + +G Sbjct: 146 RAVVGGDRLVPQIAAASIVAKTCRDDLMRRLALRHPAYAWERNAGYGTAAHLAGLTAQGR 205 Query: 194 SCIHRLTF 201 S HR++F Sbjct: 206 SPHHRVSF 213 >gi|189911146|ref|YP_001962701.1| ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775822|gb|ABZ94123.1| Ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 246 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 92/203 (45%), Gaps = 31/203 (15%) Query: 30 DEVGRGALAGPVVVAAIILDP--------NNIPFGINDSKKISHKKREELYEKI-TSSAI 80 DE GRG LAGPV V + I + DSKKI KR EL +I +A Sbjct: 28 DEAGRGTLAGPVSVGCVSFSSQTLEKIQSGTILKNLRDSKKIPEPKRFELRTEILQYAAY 87 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID------------------- 121 +S S ++ID+ NI++A I A+ L Sbjct: 88 WHVSFVSAKFIDRFNINQAIFYGISRALPVNPRQVTGHLHKTGIPLGTQTKETLAPFLFV 147 Query: 122 --GRSIPEDLPCQAF-AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + P + + ++ KGD + SI+AASI+AK RD M KYP YGF H G Sbjct: 148 DGNYKLKIHKPIEGYLSIPKGDDLVPSISAASILAKTYRDEYMEKMDAKYPGYGFAKHKG 207 Query: 179 YPTAKHQQVIKEKGPSCIHRLTF 201 Y T +H++ +++ G S IHRL+F Sbjct: 208 YGTEEHREALRKLGISPIHRLSF 230 >gi|225351148|ref|ZP_03742171.1| hypothetical protein BIFPSEUDO_02736 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158604|gb|EEG71846.1| hypothetical protein BIFPSEUDO_02736 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 249 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 48/243 (19%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAIILDPN----------------- 51 P +LE + E+ + G DEVGRG+LAGPV+V AA I + Sbjct: 7 PTLDLERAIAEQGYDVIVGFDEVGRGSLAGPVMVGAAAIWARDLDGPAGASQGGSQESSH 66 Query: 52 -NIPFGINDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA---------- 99 +P G+ DSK ++ KRE +++++ A ++ +AS++ ID+ I A Sbjct: 67 LEVPKGVADSKMLTEHKREAIFDELKSWCASWAVGAASNKEIDEWGISHALGVAALRALA 126 Query: 100 ----------------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + ++ L + +P +KGD Sbjct: 127 QAEAKLGIDGNGMLSGKPVKVGAILDGPNDYITKTLNTFDAPEVPVPANVTTKVKGDRYC 186 Query: 144 LSIAAASIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +++AAA++IAKVTRDRLM +Y Y + + GY +A H+ I E GPS +HRL++ Sbjct: 187 VAVAAAAVIAKVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHRLSW 246 Query: 202 RPL 204 + Sbjct: 247 HLV 249 >gi|289426375|ref|ZP_06428118.1| ribonuclease HII [Propionibacterium acnes SK187] gi|289153103|gb|EFD01821.1| ribonuclease HII [Propionibacterium acnes SK187] Length = 188 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 68/174 (39%), Positives = 87/174 (50%), Gaps = 4/174 (2%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREEL 71 E + + PVAG DE GRGA AGP+V AA+ILD G+ DSK +S KRE L Sbjct: 16 HERALARAGLGPVAGCDEAGRGACAGPLVAAAVILDDRRSGRIAGLADSKTLSAAKREAL 75 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 + I A +S D+ + +A + + AV L V P L DG L Sbjct: 76 FNVIMDKALAVSWVRVEADECDRLGMQEADISGLRRAVVRLGVEPGYVLSDGF-PVHGLT 134 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + KGDS+ +AAASI+AKV RDR+M + P Y F H GY TA H Sbjct: 135 VPDLGMWKGDSVCACVAAASIVAKVARDRIMIAMDAEIPGYDFAVHKGYATALH 188 >gi|92112710|ref|YP_572638.1| RNase HII [Chromohalobacter salexigens DSM 3043] gi|122420710|sp|Q1R019|RNH2_CHRSD RecName: Full=Ribonuclease HII; Short=RNase HII gi|91795800|gb|ABE57939.1| RNase HII [Chromohalobacter salexigens DSM 3043] Length = 200 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 75/184 (40%), Positives = 102/184 (55%), Gaps = 2/184 (1%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 +AG+DEVGRG L G VV AA+ILDP G+ DSK +S K+R L + I A Sbjct: 14 SRLAGVDEVGRGPLVGAVVAAAVILDPARPIEGLADSKTLSEKRRLALADAIREQAAACA 73 Query: 84 SSASHQY-IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + ID NI AT A+ A++ L V L+DG +P V+KGD Sbjct: 74 VAEASAEEIDALNIFHATHLAMRRAIDALPVTAEYLLVDGNRMP-GHHVPGQCVVKGDRR 132 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +I AASI+AKVTRD M H+++P+YGF H GYPT +H ++ GP HR +F Sbjct: 133 HAAIGAASILAKVTRDAQMVALHERHPEYGFARHKGYPTREHLAALERLGPLEEHRRSFA 192 Query: 203 PLRN 206 P++ Sbjct: 193 PVKQ 196 >gi|29469217|gb|AAO65330.1| putative ribonuclease HII [Streptomyces murayamaensis] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 5/200 (2%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A I P G+ DSK IS K Sbjct: 4 EPPTHTVERSIRATTGYKIIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLISPK 63 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R EL ++ S ++ +S Q ID+ + A A A++ L V P + ++DG+ Sbjct: 64 RRLELAGELESWVTAYALGHSSPQEIDELGMTAALRLAAVRALDGLPVKPEAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---HKKYPDYGFDSHVGYPTA 182 P VIKGD +++AAAS+IAKV RD +M + +GF + GYP+ Sbjct: 124 YLGDPWWVRTVIKGDQSCVAVAAASVIAKVRRDAMMAELGGAAGECAAFGFADNAGYPSP 183 Query: 183 KHQQVIKEKGPSCIHRLTFR 202 H+ + E GP+ HRL++ Sbjct: 184 THKTALVEWGPTPYHRLSWS 203 >gi|284045128|ref|YP_003395468.1| ribonuclease H [Conexibacter woesei DSM 14684] gi|283949349|gb|ADB52093.1| Ribonuclease H [Conexibacter woesei DSM 14684] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 67/197 (34%), Positives = 91/197 (46%), Gaps = 10/197 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKIS 64 F + + VAG DE GRG LAGP+V AA++ D I +NDSK+ + Sbjct: 23 FAFDRDL---GARFVAGADEAGRGCLAGPLVAAAVMFDYERITRSDLRALSALNDSKQQT 79 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 ++RE +Y I A + T A + Sbjct: 80 AERREAIYPVILRVATRVAVISRCAPGIDRRGLHVTNLAALRDALARVACDGCICLSDGF 139 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 DL AVI GD+ S SIAAAS++AKVTRDR M A +P + F SHVGY T +H Sbjct: 140 RVADLGHDQRAVIGGDARSASIAAASVVAKVTRDRFMHRADVLHPGWEFASHVGYATPEH 199 Query: 185 QQVIKEKGPSCIHRLTF 201 + I+ G + +HRL+F Sbjct: 200 RAAIERLGITPLHRLSF 216 >gi|195953419|ref|YP_002121709.1| Ribonuclease H [Hydrogenobaculum sp. Y04AAS1] gi|195933031|gb|ACG57731.1| Ribonuclease H [Hydrogenobaculum sp. Y04AAS1] Length = 213 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 66/196 (33%), Positives = 91/196 (46%), Gaps = 11/196 (5%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISH 65 E ++ + A +DE GRGALAGP+VV AI I DSKK+ Sbjct: 19 LIYEHQFLKRGLTL-ACVDEAGRGALAGPLVVGAILVDNLDIFFEEEYTLIKGDSKKLKE 77 Query: 66 KKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R ++ I S+ A+HQ ID I KAT A+ A+E L+ Sbjct: 78 ADRFWAFDTIKKYFKYSVGIATHQEIDDFGITKATKMAMKRALEALKGFDIVL----SDF 133 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 ++KGD S SI AS++AK TRD++M + + FD H GY T +H Sbjct: 134 INLEDYDCIPIVKGDEKSFSIRLASLVAKATRDKMMIDYASSFKPFSFDKHKGYGTKEHI 193 Query: 186 QVIKEKGPSCIHRLTF 201 + IK+ G S IHR +F Sbjct: 194 KEIKDFGLSSIHRRSF 209 >gi|329114181|ref|ZP_08242943.1| Ribonuclease HII [Acetobacter pomorum DM001] gi|326696257|gb|EGE47936.1| Ribonuclease HII [Acetobacter pomorum DM001] Length = 215 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 81/212 (38%), Positives = 109/212 (51%), Gaps = 30/212 (14%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAG-------------PVVVAAIILDPNNIPFG 56 P F E + VAG+DEVGRG LAG P +AA+I Sbjct: 7 PDFTREQQLG----GRVAGVDEVGRGPLAGPVVAAAVVFGAGVPADLAAVI--------- 53 Query: 57 INDSKKISHKKREELYEKITSSAIISISSASH--QYIDKHNIHKATLDAIYHAVENLQVI 114 +DSKK+ RE + E++ I I + IDK NIH A A+ AV L + Sbjct: 54 -DDSKKLKPAVREAIAERLPQVPGIEIGIGAASTAEIDKLNIHHAAHLAMQRAVGRLPRL 112 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 P L+DG +P D C A A++ GD +SLSIAAASI+AKV RDR M ++PDYG++ Sbjct: 113 PDHVLVDGNKLP-DFGCAAQAIVGGDRVSLSIAAASIVAKVVRDRAMARLDARWPDYGWE 171 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 + GY TA H++ + G + HR TF +R Sbjct: 172 KNAGYGTAVHRKALISVGITPHHRKTFGTVRR 203 >gi|88855258|ref|ZP_01129923.1| ribonuclease HII [marine actinobacterium PHSC20C1] gi|88815786|gb|EAR25643.1| ribonuclease HII [marine actinobacterium PHSC20C1] Length = 211 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 12/204 (5%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKK 67 P ++E + V G DEVGRGA+AGPV V + P + P G+ DSK +S K+ Sbjct: 6 PSNDIELELFSAGARTVIGCDEVGRGAIAGPVGVGMTAMTPAHGAWPIGLRDSKMLSQKR 65 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE L A +S + A +D I A A A+ L + + Sbjct: 66 RELLEPLTLEWAPLSAVGYADATEVDSIGITAALGLAGKRALIQLHEAGVDVMASVVLLD 125 Query: 127 EDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + +K D +S+AAAS++AKV RDRLM A +YP Y + S+ Sbjct: 126 GSTDWLSGALSVAPRVHTRVKADRDCVSVAAASVVAKVQRDRLMIEADGEYPGYHWPSNK 185 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTF 201 GY +A H I++ G + +HR T+ Sbjct: 186 GYGSAAHFDAIRQLGATELHRHTW 209 >gi|254560918|ref|YP_003068013.1| RNAse HII [Methylobacterium extorquens DM4] gi|254268196|emb|CAX24115.1| RNAse HII [Methylobacterium extorquens DM4] Length = 216 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 75/188 (39%), Positives = 102/188 (54%), Gaps = 5/188 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYE 73 V G DEVGRGAL GPV+VAA+ DP P I +DSK++ RE L Sbjct: 17 ALAATYPAVIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTP 76 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A +S+++ S +D+ N+ ATLDA+ AV L + L+DGR L Sbjct: 77 LIRAHARVSLAAGSRALVDRVNVRGATLDAMRRAVLGLGLDAT-VLVDGRDPIPGLTQGC 135 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 AVI GD + IAAASI+AK RD +MR ++P Y ++ + GY TA H + +G Sbjct: 136 RAVIGGDRLVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGR 195 Query: 194 SCIHRLTF 201 S HRL+F Sbjct: 196 SPHHRLSF 203 >gi|332978396|gb|EGK15114.1| ribonuclease HII [Psychrobacter sp. 1501(2011)] Length = 308 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 69/254 (27%), Positives = 99/254 (38%), Gaps = 68/254 (26%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD------------PNNIPFG 56 +P + + GIDEVGRG L G VVV+ IL + Sbjct: 58 KPTLQFD-----------IGIDEVGRGPLYGSVVVSGAILPCQWSAEIEQNPLQDTPLAI 106 Query: 57 INDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP 115 + DSKK++ KRE L+E I A I ID+ NI +ATL + A E + + Sbjct: 107 LTDSKKLTEAKRERLFEPIKQQALAYMIVEIPASVIDEVNILQATLMGMRLACEQIMIEM 166 Query: 116 RSA--------------------------------------------LIDGRSIPEDLPC 131 A Sbjct: 167 VQALQSNLDKSLEVEGFLDIHSSSQNHIAFNLLIDGNKVPDLDSQLLQHYNIGPELKHSV 226 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 A A +KGD+ +IAAAS++AKV+RDR + +P YG + H GYPT H + I++ Sbjct: 227 NAEAWVKGDARHSAIAAASVLAKVSRDRQLIKDGAAHPGYGLEGHKGYPTKAHIEAIQKL 286 Query: 192 GPSCIHRLTFRPLR 205 G HR +F+P++ Sbjct: 287 GVLPQHRRSFKPVQ 300 >gi|163851219|ref|YP_001639262.1| ribonuclease H [Methylobacterium extorquens PA1] gi|163662824|gb|ABY30191.1| Ribonuclease H [Methylobacterium extorquens PA1] Length = 216 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 77/199 (38%), Positives = 104/199 (52%), Gaps = 12/199 (6%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKK 62 P P V G DEVGRGAL GPV+VAA+ DP P I +DSK+ Sbjct: 13 PFDPTL-------AATYPAVIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKR 65 Query: 63 ISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 + RE L I + A +S+++ S +D+ N+ ATLDA+ AV L + L+DG Sbjct: 66 LDRAAREALTPLIRAHARVSLAAGSRALVDRVNVRGATLDAMRRAVLGLGLDAT-VLVDG 124 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 R L AVI GD + IAAASI+AK RD +MR ++P Y ++ + GY TA Sbjct: 125 RDPIPGLTQGCRAVIGGDRLVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTA 184 Query: 183 KHQQVIKEKGPSCIHRLTF 201 H + +G S HRL+F Sbjct: 185 AHLAGLTAQGRSPHHRLSF 203 >gi|254431100|ref|ZP_05044803.1| ribonuclease HII [Cyanobium sp. PCC 7001] gi|197625553|gb|EDY38112.1| ribonuclease HII [Cyanobium sp. PCC 7001] Length = 201 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 5/192 (2%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70 E +N AG+DEVGRG L GPV A++L G+ DSKK+S ++RE Sbjct: 3 EDPWFGRNPACCAGVDEVGRGCLFGPVFAGAVVLGAEAAAALTAQGLTDSKKLSARRREA 62 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 L I +A ++ AS ID I +AT A+ A+ L P L+DG Sbjct: 63 LLPLIREAAEAWALGQASAAEIDGFGIRQATERAMQRALAKLPQPPALLLVDGVLPLRGW 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 P + +++GDS + +IAAAS++AK RD+LMR ++P YG + H GY TA+H+ + Sbjct: 123 PGEQATLVRGDSRNAAIAAASVLAKQARDQLMRTLADRFPGYGLERHAGYGTAQHRAALL 182 Query: 190 EKGPSCIHRLTF 201 GP+ +HR +F Sbjct: 183 SLGPTALHRRSF 194 >gi|119025252|ref|YP_909097.1| ribonuclease HII [Bifidobacterium adolescentis ATCC 15703] gi|118764836|dbj|BAF39015.1| ribonuclease [Bifidobacterium adolescentis ATCC 15703] Length = 264 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 102/237 (43%), Gaps = 37/237 (15%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL--------DPNNIPFG 56 S+ P ++E + + G DEVGRG+LAGPV+V A + P +P G Sbjct: 28 SVSIVPTLDMERAIAASGYDVIVGFDEVGRGSLAGPVMVGAAAIRTCDLSGPSPLAVPDG 87 Query: 57 INDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA---------------- 99 + DSK ++ +RE ++E++ A ++ SAS+ ID I A Sbjct: 88 VADSKMLTEHRREAIFEELKSWCASWAVGSASNTEIDDWGISYALGVAALRALSEAETRL 147 Query: 100 --------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF--AVIKGDSISLSIAAA 149 + D+P A +KGD ++A A Sbjct: 148 GIDGNGLLDGRPVKVGAILDGPNDYITKALNTFDAPDVPVPAEVSTKVKGDRYCATVATA 207 Query: 150 SIIAKVTRDRLMRIAHK--KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 ++IAKVTRDRLM +Y Y + + GY +A H+ I E GPS +HRL++ + Sbjct: 208 AVIAKVTRDRLMVELGAQPQYEPYEWAHNKGYGSAAHRDAIAEFGPSDLHRLSWHLV 264 >gi|240138372|ref|YP_002962844.1| RNAse HII [Methylobacterium extorquens AM1] gi|240008341|gb|ACS39567.1| RNAse HII [Methylobacterium extorquens AM1] Length = 216 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 75/188 (39%), Positives = 102/188 (54%), Gaps = 5/188 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYE 73 V G DEVGRGAL GPV+VAA+ DP P I +DSK++ RE L Sbjct: 17 ALAATYPAVIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTP 76 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A +S+++ S +D+ N+ ATLDA+ AV L + L+DGR L Sbjct: 77 LIRAHARVSLAAGSRALVDRVNVRGATLDAMRRAVLGLGLDAT-VLVDGRDPIPGLTQGC 135 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 AVI GD + IAAASI+AK RD +MR ++P Y ++ + GY TA H + +G Sbjct: 136 RAVIGGDRLVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGR 195 Query: 194 SCIHRLTF 201 S HRL+F Sbjct: 196 SPHHRLSF 203 >gi|167043779|gb|ABZ08470.1| putative Ribonuclease HII [uncultured marine microorganism HF4000_APKG3D20] Length = 252 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 105/232 (45%), Gaps = 38/232 (16%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--------GIN 58 P + + K + G+DE GRG LAGPVV A++L +N Sbjct: 1 MPNPLWTHDRKA-SKGRAGIVGVDEAGRGCLAGPVVAGAMLLPTGFFKKASNRRRCVEVN 59 Query: 59 DSKKISHKKREELYEKITS-----SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113 DSK+++ ++RE+L++ I + A+ I+ NI AT A+ A++ L Sbjct: 60 DSKQLNEEQREKLFKTIERLRDLGELWFTTGEATVNEIESENIVGATCIAMRRAMDALGD 119 Query: 114 IP------------------------RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAA 149 R ++ + LP ++KGD++SL +A A Sbjct: 120 KCEGRWGPQDKDEAEGFFASEIEQSERWIVLVDGKPMKRLPHAHEGLVKGDTLSLGVAMA 179 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 SI AKVTRDR+MR + YP Y F S+ GY + H + + E GP+ +HR F Sbjct: 180 SIAAKVTRDRIMRKLDQSYPAYDFASNKGYGSPNHLRGLDEHGPTEVHRPRF 231 >gi|294056229|ref|YP_003549887.1| Ribonuclease H [Coraliomargarita akajimensis DSM 45221] gi|293615562|gb|ADE55717.1| Ribonuclease H [Coraliomargarita akajimensis DSM 45221] Length = 238 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 101/221 (45%), Gaps = 33/221 (14%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--------FGINDSKKIS 64 E +A + ++ W + GIDE GRG LAGPVV A +L + INDSK++S Sbjct: 6 EHDAELLQELDWLI-GIDEAGRGCLAGPVVAGACVLADDFFDNVSALERSARINDSKQLS 64 Query: 65 HKKREELYEKITSS-----AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR--- 116 RE Y + +++S + I + NI A A+ AV+ L V Sbjct: 65 ADAREGQYRLLEDLQGEGLIDFAVASGTVTEIAELNILGANRLAMQRAVDALAVRATGWE 124 Query: 117 ----------------SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 LI + P ++KGD SL+IA ASI AKVTRDRL Sbjct: 125 LPVLGAEDPLFAAQAAVKLIVDGRPLKPWPYAHEGIVKGDGKSLAIAMASIAAKVTRDRL 184 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 M ++YP YGF H GY T +H+ + +GP HR F Sbjct: 185 MLELDQQYPQYGFAQHKGYGTKQHRHALAAEGPCPEHRELF 225 >gi|294102509|ref|YP_003554367.1| Ribonuclease H [Aminobacterium colombiense DSM 12261] gi|293617489|gb|ADE57643.1| Ribonuclease H [Aminobacterium colombiense DSM 12261] Length = 195 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 73/191 (38%), Positives = 106/191 (55%), Gaps = 8/191 (4%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYE-KIT 76 +AG+DE GRG LAGPVV AA++L P+ + G+NDSKK++ KRE++++ ++ Sbjct: 2 GNRVIAGVDEAGRGPLAGPVVAAAVVLTPSQLDALAALGLNDSKKLTPLKREKIFKAMVS 61 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVEN-LQVIPRSALIDGRSIPEDLPCQAFA 135 +AS + ID+ NI +ATL A+ +V V + IP A Sbjct: 62 LGVAWRAQAASPRRIDQMNILQATLWAMSRSVNKLPHVFEEVIVDGSVLIPGLRSYPQKA 121 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 + KGDS+ +AAAS++AKV RDR M YP Y F H GYPT H++ I E G S Sbjct: 122 IPKGDSLVPEVAAASVVAKVLRDRAMVALDMAYPQYNFAKHKGYPTEDHRRRITEFGLSP 181 Query: 196 IHRLT--FRPL 204 IHR + ++ + Sbjct: 182 IHRRSFTWKTV 192 >gi|45657433|ref|YP_001519.1| ribonuclease HII [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600672|gb|AAS70156.1| ribonuclease HII [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 231 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 77/208 (37%), Positives = 104/208 (50%), Gaps = 24/208 (11%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISH 65 E +++ GIDE GRG AGP+ VA + IL I G+ DSKK+S Sbjct: 14 EHRFYSESIP--CGIDEAGRGPYAGPLSVALVSFSQNSLTQIL-EGKILKGLTDSKKLSE 70 Query: 66 KKREELYEKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSAL----- 119 KKRE LY +I +A S + YID+ I++A L+ I + + +S Sbjct: 71 KKRESLYPEIIKAAQFSYQTFISPNYIDRKGINRAVLEGILKCTKLINRFTQSKFPLKLL 130 Query: 120 ------IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + +L + IKGD +SIAAASI+AKV+RDR M KKYP Y F Sbjct: 131 IDGNYNFNRYPEWMNLKGCSTFYIKGDLRIVSIAAASILAKVSRDRYMISVSKKYPIYRF 190 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 D H GY T H+++I G S IHR +F Sbjct: 191 DQHKGYGTKLHEELILLHGLSDIHRRSF 218 >gi|212716712|ref|ZP_03324840.1| hypothetical protein BIFCAT_01647 [Bifidobacterium catenulatum DSM 16992] gi|212660416|gb|EEB20991.1| hypothetical protein BIFCAT_01647 [Bifidobacterium catenulatum DSM 16992] Length = 259 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 107/253 (42%), Gaps = 58/253 (22%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-------------------DP 50 P +LE + E+ + G DEVGRG+LAGPV+V A + P Sbjct: 7 PTLDLERAIAEQGYDVIVGFDEVGRGSLAGPVMVGAAAIWARDLDGAAGASQGGSQESSP 66 Query: 51 NNIPFGINDSKKISHKKREELYEKI-TSSAIISISSASHQYIDKHNIHKA---------- 99 +P G+ DSK ++ KRE +++++ A ++ +AS+ ID+ I A Sbjct: 67 LEVPKGVADSKMLTEHKREAIFDELEQWCAAWAVGAASNTEIDEWGISYALGVAALRALA 126 Query: 100 --------------------------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I ++ AL + +P Sbjct: 127 EAERKLGIGGGESAGIAGSSESSEALNNLKIGAILDGPNDYITKALNTFDAPDVPIPADV 186 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK--YPDYGFDSHVGYPTAKHQQVIKEK 191 +KGD ++A A++IAKVTRDRLM + Y Y + ++ GY +A H+ I E Sbjct: 187 TCKVKGDRHCATVATAAVIAKVTRDRLMVKLAAQPQYAPYEWANNKGYGSAAHRDAIAEF 246 Query: 192 GPSCIHRLTFRPL 204 GPS +HRL++ + Sbjct: 247 GPSDLHRLSWHLV 259 >gi|123969237|ref|YP_001010095.1| ribonuclease HII and HIII [Prochlorococcus marinus str. AS9601] gi|166226638|sp|A2BT77|RNH2_PROMS RecName: Full=Ribonuclease HII; Short=RNase HII gi|123199347|gb|ABM70988.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. AS9601] Length = 205 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 101/180 (56%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAII 81 GIDEVG+GA+ GPV AA++L N FG+ DSKK++ KKR+ L KI S+ Sbjct: 19 VGIDEVGKGAIFGPVFAAAVVLTEKNKFILKQFGVTDSKKLTPKKRKLLLPKILLLSSDY 78 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I +S + IDK I AT ++ A+ L+ P +IDG + ++ GDS Sbjct: 79 GIGQSSAREIDKLGIRVATELSMIRALRKLKEKPSELIIDGPLLLRPWNGIQKNIVSGDS 138 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SIA+ASI+AKV+RD LM K Y Y + GY T +H +IK+ G + +HR +F Sbjct: 139 KFISIASASIVAKVSRDNLMERLEKNYSGYLIFKNKGYGTREHLSLIKKNGITELHRKSF 198 >gi|294828096|ref|NP_712567.2| ribonuclease H II [Leptospira interrogans serovar Lai str. 56601] gi|293385944|gb|AAN49585.2| ribonuclease H II [Leptospira interrogans serovar Lai str. 56601] Length = 231 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 75/208 (36%), Positives = 101/208 (48%), Gaps = 24/208 (11%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISH 65 E +++ GIDE GRG AGP+ VA + IL I G+ DSKK+S Sbjct: 14 EHRFYSESIP--CGIDEAGRGPYAGPLSVALVSFSQNSLTQIL-EGKILKGLTDSKKLSE 70 Query: 66 KKREELYEKITSSAIISISSAS-HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 KKRE LY +I +A S + YID+ I++A L+ I + + +S Sbjct: 71 KKRESLYPEIIKAAQFSYQTFISPNYIDRKGINRAVLEGILKCTKLINRFTQSKFPLKLL 130 Query: 125 IPEDLPCQAFAVIK-----------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 I + + GD +SIAAASI+AKV+RDR M KKYP Y F Sbjct: 131 IDGNYNFNRYPEWMNLKDCSTFYIKGDLRIVSIAAASILAKVSRDRYMISVSKKYPIYRF 190 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 D H GY T H+++I G S IHR +F Sbjct: 191 DQHKGYGTKLHEELILLHGLSDIHRRSF 218 >gi|269219635|ref|ZP_06163489.1| ribonuclease HII [Actinomyces sp. oral taxon 848 str. F0332] gi|269210877|gb|EEZ77217.1| ribonuclease HII [Actinomyces sp. oral taxon 848 str. F0332] Length = 227 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 64/208 (30%), Positives = 94/208 (45%), Gaps = 16/208 (7%) Query: 10 PHFELEAMVREK--NMWPVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISH 65 P E+E +AG+DEVGRG+LAGPV V ++D + P G+ DSK +S Sbjct: 10 PSREIEIDALRSLPPGALIAGVDEVGRGSLAGPVSVGIALIDASTGDFPEGLRDSKAMSP 69 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 RE + + A +++ A ID I A A A+ L P + L+DG+ Sbjct: 70 AARERMAPLVREWAVDVAVGHAGPDVIDDVGIVAALRHAAKEALNGLSATPSAVLLDGKH 129 Query: 125 IPE-----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 +KGD+ IAAAS+ AKV RD LM + +P Y + Sbjct: 130 NWWAEDSLFDVDPLLPQIPVRMEVKGDARCAVIAAASVAAKVERDGLMVVLDGCFPGYDW 189 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + GY + H + + GPS HR ++ Sbjct: 190 ARNKGYASPSHIEGLARLGPSDHHRKSW 217 >gi|260460365|ref|ZP_05808617.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075] gi|259034010|gb|EEW35269.1| Ribonuclease H [Mesorhizobium opportunistum WSM2075] Length = 205 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 97/188 (51%), Positives = 131/188 (69%), Gaps = 2/188 (1%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 +WPVAG+DE GRG LAGPVV AA++LDP NIP G++DSK++SH +RE L+ +I SA Sbjct: 2 ADGLWPVAGMDEAGRGPLAGPVVAAAVVLDPANIPEGLDDSKRLSHLQREALFLRILGSA 61 Query: 80 I-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 +S++S S + ID NI KA+L+A+ A+ L V P+ AL DGR +P LPC+ A+IK Sbjct: 62 QAVSMASISAEGIDGSNILKASLEAMRRALVGLSVRPKLALADGRDVPPGLPCEGRALIK 121 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP-SCIH 197 GD S SIAAASI+AKV RDR+M YGF+ H+GY TA+H+ I+ GP + +H Sbjct: 122 GDQRSQSIAAASIVAKVMRDRMMCGCGSHNGRYGFEVHMGYATARHRTAIEAHGPVARLH 181 Query: 198 RLTFRPLR 205 R++F P R Sbjct: 182 RVSFSPFR 189 >gi|163839835|ref|YP_001624240.1| ribonuclease HII [Renibacterium salmoninarum ATCC 33209] gi|162953311|gb|ABY22826.1| ribonuclease HII [Renibacterium salmoninarum ATCC 33209] Length = 217 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 23/205 (11%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSS 78 + VAG DEVGRGALAGPV V +++D + G+ DSK +S ++RE L I Sbjct: 3 AGIRFVAGADEVGRGALAGPVSVGMVVVDASAQKPLAGVKDSKLLSAQERESLVPLIKHW 62 Query: 79 AI-ISISSASHQYIDKHNIHKATLD---AIYHAVENLQVIPRSALIDGRSIPE------- 127 A+ ++ AS ID + A ++ + V + ++DG Sbjct: 63 AVGHAVGHASAAEIDAGGLTSALRLAGTRAWNQLLAAGVRAETVILDGNHNWLASAQLSI 122 Query: 128 ----------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + IK D LS+AAAS++AKV RD ++ P +G+ + Sbjct: 123 FDTPTADEELGVDVPVQTKIKADLSCLSVAAASVLAKVERDAILIELDAANPQFGWKINK 182 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFR 202 GY TA H+ I G S HR+++R Sbjct: 183 GYATASHRNAIDLHGASQWHRMSWR 207 >gi|218530087|ref|YP_002420903.1| ribonuclease H [Methylobacterium chloromethanicum CM4] gi|218522390|gb|ACK82975.1| Ribonuclease H [Methylobacterium chloromethanicum CM4] Length = 216 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 75/188 (39%), Positives = 102/188 (54%), Gaps = 5/188 (2%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYE 73 V G DEVGRGAL GPV+VAA+ DP P I +DSK++ RE L Sbjct: 17 ALAATYPAVIGCDEVGRGALCGPVMVAAVWFDPVAFPPEILARLDDSKRLDRAAREALTP 76 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 I + A +S+++ S +D+ N+ ATLDA+ AV L + L+DGR L Sbjct: 77 LIRAHARVSLAAGSRALVDRVNVRGATLDAMRRAVLGLGLDAT-VLVDGRDPIPGLTQGC 135 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGP 193 AVI GD + IAAASI+AK RD +MR ++P Y ++ + GY TA H + +G Sbjct: 136 RAVIGGDRLVPQIAAASIVAKTFRDEIMRRLAPRHPAYAWERNAGYGTAAHLAGLTAQGR 195 Query: 194 SCIHRLTF 201 S HRL+F Sbjct: 196 SQHHRLSF 203 >gi|218458163|ref|ZP_03498254.1| ribonuclease HII [Rhizobium etli Kim 5] Length = 161 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 84/160 (52%), Positives = 112/160 (70%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 ++ P P F LE R+ WPVAG DE GRG LAGPVV AA+ILDP IP G+NDSK++ Sbjct: 1 DTAPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQL 60 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S ++REEL+ +I ++A +SI+S+S ID+ +I KA+LDA+ A+ +L V L DG Sbjct: 61 SAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAVPASYVLTDGL 120 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 +P L C AV+KGD+ S+SIAAASI+AKVTRDR+M Sbjct: 121 DVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMAR 160 >gi|269795662|ref|YP_003315117.1| ribonuclease HII [Sanguibacter keddieii DSM 10542] gi|269097847|gb|ACZ22283.1| ribonuclease HII [Sanguibacter keddieii DSM 10542] Length = 246 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 95/223 (42%), Gaps = 27/223 (12%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKIS 64 P E+E + +AG+DEVGRGALAGPV V ++D P G+ DSK ++ Sbjct: 9 PVFADLEVETGMLAAGARRLAGMDEVGRGALAGPVSVGVCVVDLSTGPCPVGLTDSKVLT 68 Query: 65 HKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + R E I ++ + + SAS ID I +A A A+ + Sbjct: 69 ARARTEYLPLIDDWSVATAVGSASAAEIDAVGIVRALRLAGQRALVAVARTAGPVDTVLL 128 Query: 124 SIPEDLPCQ------------------------AFAVIKGDSISLSIAAASIIAKVTRDR 159 D + +K D S+AAAS++AK RD Sbjct: 129 DGSHDWLTEPEPDLLTMLEGEEVAAPDGYLAPRVQTRVKADLSCASVAAASVVAKCERDA 188 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 M K +P YG+ + GY +A+H + E GPS HR+++R Sbjct: 189 SMVQLAKDHPHYGWIGNKGYGSAQHVAALGEHGPSPFHRVSWR 231 >gi|311744109|ref|ZP_07717915.1| ribonuclease HII [Aeromicrobium marinum DSM 15272] gi|311313239|gb|EFQ83150.1| ribonuclease HII [Aeromicrobium marinum DSM 15272] Length = 191 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 88/175 (50%), Gaps = 2/175 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE GRGA AGP+V AA+ILD G+ DSK ++ +RE +++I + A+ Sbjct: 2 AGVDEAGRGACAGPLVAAAVILD--RPVPGLADSKLLTPARREACHDEILTRAVDVSVVV 59 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 ++ + L A+ KGD ++ SI Sbjct: 60 VSAADCDRLGLHRANIEALRRALARLTRRPGYVLTDGFPVDGLGTPGLAMWKGDRVAASI 119 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AAAS++AKVTRDRLM H+++P Y F +H GY TA H+ ++ GP HR T+ Sbjct: 120 AAASVVAKVTRDRLMVELHEQFPAYDFGTHKGYATAAHEAALRRHGPCAEHRSTY 174 >gi|294867798|ref|XP_002765242.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983] gi|239865237|gb|EEQ97959.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983] Length = 630 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 79/201 (39%), Positives = 109/201 (54%), Gaps = 16/201 (7%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKIS-HKKREELYEKITSS 78 K + V G+DE GRG L GPVV AA+ ++ + IP+GI DSK IS + R+ +YE++T++ Sbjct: 5 KAVDIVIGVDEAGRGPLCGPVVAAAVYINQDTYIPYGICDSKTISNEEYRDMMYEQLTNN 64 Query: 79 --AIISISSASHQYIDKHNIHKATLDAIYHAV------------ENLQVIPRSALIDGRS 124 S+ ++ ID NI +AT A AV + +I + + Sbjct: 65 KGVKWSVGIVDNKVIDTINILQATFTAKTEAVLKLTKDGEGRKSKYHVLIDGNRVPPQLL 124 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 ++ Q ++KGDS IAAASIIAKVTRDR+M H P Y H GYPT H Sbjct: 125 NNNNINLQCTPIVKGDSKEYIIAAASIIAKVTRDRIMHHIHNNIPQYNVSQHKGYPTTAH 184 Query: 185 QQVIKEKGPSCIHRLTFRPLR 205 ++K GPS HRLTF PL+ Sbjct: 185 IALLKRLGPSKYHRLTFAPLK 205 >gi|289644815|ref|ZP_06476868.1| Ribonuclease H [Frankia symbiont of Datisca glomerata] gi|289505371|gb|EFD26417.1| Ribonuclease H [Frankia symbiont of Datisca glomerata] Length = 208 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 2/180 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREELYEKITSSAIISIS 84 AG+DE GRGA AGP+VVAA++L N + DSK++S + RE+++++I S A + Sbjct: 2 AGVDEAGRGACAGPLVVAAVVLPANGSRRLVDLADSKRLSPRLREQVFDEILSVAQAWAT 61 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A ++ L + AV+KGD + Sbjct: 62 VVIQSSEIDACGVHVANIAGMRRAVARLGRRPGYVLTDGFAVPGLGVASTAVLKGDQVVA 121 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +AAAS++AKVTRDR+M+ H ++P+Y F H GY TA H + GP HR+++ + Sbjct: 122 CVAAASVVAKVTRDRIMKDLHHRHPEYDFAQHKGYVTAGHAAALSAYGPCEQHRMSYVNV 181 >gi|291277271|ref|YP_003517043.1| ribonuclease HII [Helicobacter mustelae 12198] gi|290964465|emb|CBG40315.1| ribonuclease HII [Helicobacter mustelae 12198] Length = 243 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 11/191 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA--I 80 GIDE GRG+L G + V+ + + GI DSKK + R+ L + + Sbjct: 49 CGIDEAGRGSLCGSLFVSGVACTKDLAQMLQIQGIKDSKKTTKNTRKNLANLLIHTPGIH 108 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ---AFAVI 137 I + + ID+ + + + ++NLQ ++DG + P +I Sbjct: 109 FCIIEKTAKEIDEKGLSCCMRECLQSIIKNLQSFTSHFIMDGNTTFGFHPPPPLYLKTLI 168 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 KGD++ I+AAS++AK +D M K YP+YGF SH GY T+ H IK GP+ H Sbjct: 169 KGDALLPQISAASVLAKYAKDCEMMHLDKIYPNYGFASHSGYGTSAHIAQIKALGPTKEH 228 Query: 198 RLTFRPLRNLS 208 R F L++L+ Sbjct: 229 RRNF--LKDLT 237 >gi|170743460|ref|YP_001772115.1| ribonuclease H [Methylobacterium sp. 4-46] gi|168197734|gb|ACA19681.1| Ribonuclease H [Methylobacterium sp. 4-46] Length = 209 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 79/206 (38%), Positives = 111/206 (53%), Gaps = 13/206 (6%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKIS 64 RP E + G DEVGRGAL GPV+VAA+ DP +P + +DSK++ Sbjct: 3 RPFLARE----AARYPALIGCDEVGRGALCGPVIVAAVHFDPAALPPDLLEALDDSKRLD 58 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 R L ++ + A I+ + AS ID+ N+ ATLDA+ AV L + +DGR Sbjct: 59 AATRARLAARLPALARIAYAGASRDLIDRINVRAATLDAMARAVLRLGLAGP-VAVDGRD 117 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 P L + AVI G+ + IAAASI+AKV RDRLM + +++P Y + + GY TA H Sbjct: 118 RPPGLDGRVRAVIGGERLVPQIAAASILAKVLRDRLMAVLARRHPAYAWARNAGYGTAAH 177 Query: 185 QQVIKEKGPSCIHRLTF----RPLRN 206 + + +GPS HR +F P N Sbjct: 178 RAALLREGPSPHHRRSFRLGGAPCHN 203 >gi|220925905|ref|YP_002501207.1| ribonuclease HII/HIII [Methylobacterium nodulans ORS 2060] gi|219950512|gb|ACL60904.1| ribonuclease HII/HIII [Methylobacterium nodulans ORS 2060] Length = 211 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 74/184 (40%), Positives = 107/184 (58%), Gaps = 5/184 (2%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSS 78 + G DEVGRGAL GPV+VAA+ DP +P + +DSK++ R L ++ Sbjct: 13 YPVLIGCDEVGRGALCGPVIVAAVHFDPAALPPDLLEALDDSKRLDAATRRRLALRLRDC 72 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIK 138 A + + AS ID+ NI ATLDA+ +V L + +DGR +P L + AVI Sbjct: 73 AAFAYAGASRALIDRINIRAATLDAMARSVRRLGIAGS-VAVDGRDLPPGLDGRVQAVIG 131 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 G+ + IAAASI+AKV RD LM + +++P YG++ + GY TA H+ + +GPS HR Sbjct: 132 GERLVPQIAAASILAKVLRDHLMTVLARRHPAYGWERNAGYGTAAHRAAMLRQGPSPHHR 191 Query: 199 LTFR 202 +FR Sbjct: 192 RSFR 195 >gi|238796623|ref|ZP_04640130.1| Ribonuclease HII [Yersinia mollaretii ATCC 43969] gi|238719601|gb|EEQ11410.1| Ribonuclease HII [Yersinia mollaretii ATCC 43969] Length = 166 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 70/161 (43%), Positives = 94/161 (58%), Gaps = 2/161 (1%) Query: 47 ILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIY 105 ILDP G+ DSKK+S K+R LY++IT A S+ A + ID NI AT+ A+ Sbjct: 2 ILDPKRPIVGLADSKKLSEKRRLSLYDEITDKALSWSLGRAEPEEIDSLNILHATMLAMQ 61 Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 AV L + P LIDG P+ + AV+KGDS I+AASI+AKVTRDR M Sbjct: 62 RAVAGLHITPDYVLIDGNRCPKLAM-PSLAVVKGDSRVAEISAASILAKVTRDREMTELD 120 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 + +P+YGF H GYPTA H + + G + HR +F P++ Sbjct: 121 RDFPEYGFAQHKGYPTAVHLEKLYAFGATEHHRRSFGPVKR 161 >gi|134298779|ref|YP_001112275.1| ribonuclease H [Desulfotomaculum reducens MI-1] gi|134051479|gb|ABO49450.1| Ribonuclease H [Desulfotomaculum reducens MI-1] Length = 355 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 3/175 (1%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK-ISHKKREELYEKITSSA-IISIS 84 AGIDEVG ++AGP+V A ++L ++ GI K ++ K EE+ I A I+ Sbjct: 89 AGIDEVGVSSIAGPMVAAVVVLPHDHNIPGIPRDSKEMTLKSIEEISSLIFEKADFWHIA 148 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQ-VIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 S S + ID A ++ V P+ +I + AV KGDSI Sbjct: 149 SISPKEIDDIGPELAREKLWMECANKVRSVFPKIRIIVDGKDKIPGFTKQNAVSKGDSIF 208 Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 ++AA+I+AK D MRI H YP Y F + GYP +H IK G HR Sbjct: 209 SGVSAAAIVAKQYCDNEMRILHNYYPQYNFSKNKGYPVYEHYVAIKNYGICPSHR 263 >gi|302537359|ref|ZP_07289701.1| ribonuclease HII [Streptomyces sp. C] gi|302446254|gb|EFL18070.1| ribonuclease HII [Streptomyces sp. C] Length = 236 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 70/202 (34%), Positives = 108/202 (53%), Gaps = 9/202 (4%) Query: 8 ERPHFELEAMVREK-NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK 66 E P +E +R +AG+DEVGRGA AGPV V A I P G+ DSK ++ K Sbjct: 4 EAPTHTVERSLRATTGAKVIAGVDEVGRGAWAGPVTVCAAITGLRRPPEGLTDSKLLTPK 63 Query: 67 KREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 +R+ L E + + AS + ID+ + A A A+E L + P + ++DG+ Sbjct: 64 RRDALLEVLEDWVTAHALGHASPEEIDELGMTAALRLAAVRALEALPMRPDAVILDGKHD 123 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD-----YGFDSHVGYP 180 P + VIKGD +++AAAS+IAKV RDR+M + P + F ++ GYP Sbjct: 124 YLGPPWRVRTVIKGDQSCIAVAAASVIAKVRRDRMMAGLGE--PGDGVADFAFAANAGYP 181 Query: 181 TAKHQQVIKEKGPSCIHRLTFR 202 + H+ ++ +GP+ HRL++ Sbjct: 182 SPVHRAALEVRGPTAYHRLSWS 203 >gi|170750072|ref|YP_001756332.1| ribonuclease H [Methylobacterium radiotolerans JCM 2831] gi|170656594|gb|ACB25649.1| Ribonuclease H [Methylobacterium radiotolerans JCM 2831] Length = 232 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 75/179 (41%), Positives = 104/179 (58%), Gaps = 7/179 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKITSSAIIS 82 G DEVGRGAL GPVVVAA+ DP IP + +DSK++ RE L I + A ++ Sbjct: 52 IGCDEVGRGALCGPVVVAAVWFDPTAIPPDLLAALDDSKRVPEPVRERLAPLIRAHARVA 111 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 +++ S ID+ NI ATLDA+ AV L + + + AVI GD + Sbjct: 112 VAAGSRALIDRINIRGATLDAMARAVARLGLAAPVLVDGRDA---LPGLPGRAVIGGDHL 168 Query: 143 SLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 IAAASI+AKV RD+LMR +++P YG++ +VGY TA H+ + + G S HRL+F Sbjct: 169 VPQIAAASIVAKVLRDQLMRRLARRHPGYGWERNVGYGTAVHRAGLTQLGRSAHHRLSF 227 >gi|229818328|ref|ZP_04448609.1| hypothetical protein BIFANG_03630 [Bifidobacterium angulatum DSM 20098] gi|229784198|gb|EEP20312.1| hypothetical protein BIFANG_03630 [Bifidobacterium angulatum DSM 20098] Length = 239 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 41/234 (17%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL-------DPNNIPFGINDSKK 62 P +LE + ++ + G DEVGRG+LAGPV+V A + +P G+ DSK Sbjct: 4 PTLDLEHTLADRQYDVIVGFDEVGRGSLAGPVMVGACAIRAQDVRDGAKEVPQGVADSKM 63 Query: 63 ISHKKREELYEKI-TSSAIISISSASHQYIDKHNIHKA---------------------- 99 ++ +RE + +++ SA ++ +AS+ ID+ I A Sbjct: 64 LTEHRREAIVDELKDWSAAWAVGAASNTEIDEWGISYALGVAALRALAEVERTLGIGDDG 123 Query: 100 --------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151 T ++ ++ AL + +P +KGD ++AAA++ Sbjct: 124 TAVIGGVKTRASVGAILDGPNDYITKALNTFEAPVVPVPADVVTKVKGDQHCATVAAAAV 183 Query: 152 IAKVTRDRLMRIAHKKYPDY---GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 IAKVTRDRLM P Y ++ + GY + H+ I + GP+ +HR++++ Sbjct: 184 IAKVTRDRLMVSIAHSDPQYAPYEWEHNKGYGSKAHRAAIAQYGPTALHRISWK 237 >gi|78779978|ref|YP_398090.1| RNase HII [Prochlorococcus marinus str. MIT 9312] gi|97189158|sp|Q318P1|RNH2_PROM9 RecName: Full=Ribonuclease HII; Short=RNase HII gi|78713477|gb|ABB50654.1| RNase HII [Prochlorococcus marinus str. MIT 9312] Length = 205 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 98/180 (54%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAII 81 GIDEVGRGA+ GPV A ++L N FG+ DSKK++ KKR+ L KI S+ Sbjct: 19 VGIDEVGRGAVFGPVFSAVVVLTEKNKFILKQFGVKDSKKLTPKKRKLLLPKILLLSSDY 78 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I +S + ID I AT ++ A++ L+ P ++DG + ++ GDS Sbjct: 79 GIGQSSAREIDMLGIRVATELSMIRALKKLKEKPSEIIVDGPLLLRPWKGIQKNIVSGDS 138 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +IA+ASI+AKV RD LM KKY Y + GY T +H IK+ G + +HR +F Sbjct: 139 KITAIASASIVAKVARDNLMERLEKKYSGYLIFKNKGYGTREHFSNIKKNGITNLHRKSF 198 >gi|210135480|ref|YP_002301919.1| ribonuclease HII [Helicobacter pylori P12] gi|238056778|sp|B6JNG1|RNH2_HELP2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|210133448|gb|ACJ08439.1| ribonuclease hII [Helicobacter pylori P12] Length = 204 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 62/190 (32%), Positives = 91/190 (47%), Gaps = 9/190 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS-- 78 + GIDE GRG LAG + VA + + + G+ DSKK+S KKR L +KI + Sbjct: 1 MILGIDEAGRGCLAGSLFVAGVACNDQTALELLKMGLKDSKKLSLKKRFFLEDKIKTHGK 60 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAV 136 + S ID + AI +EN + + IDG + + Sbjct: 61 VKFFVVKKSANEIDNLGLGACLKLAIQEILENNRSLANEIKIDGNTAFGLNKRYPNIQTI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA AS++AK +DR M H + +YG+D + GY T +H + I + G + Sbjct: 121 IKGDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAITKLGATPF 180 Query: 197 HRLTFRPLRN 206 HR +F L+N Sbjct: 181 HRHSF-TLKN 189 >gi|210633137|ref|ZP_03297704.1| hypothetical protein COLSTE_01617 [Collinsella stercoris DSM 13279] gi|210159291|gb|EEA90262.1| hypothetical protein COLSTE_01617 [Collinsella stercoris DSM 13279] Length = 262 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 3/169 (1%) Query: 34 RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYID 92 RG++AGP+ V A+ L +GINDSK++S KRE L +I A + I + ID Sbjct: 85 RGSVAGPLTVCAVCLPDEPRLWGINDSKQLSPAKREILAVRIAECARAVGICHIPPERID 144 Query: 93 KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152 + + +A +A+ AV + + P L+DG + V+KGD+ IAAASI+ Sbjct: 145 EIGMARALREAVAGAVADTGLQPDCVLMDGNPLGAVPH--ERDVVKGDATVACIAAASIV 202 Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AKVTRD LM +YP Y GY +A+H Q I+E+G S IHR++F Sbjct: 203 AKVTRDELMVEYDAEYPGYHLAQSKGYASAEHIQAIRERGLSPIHRVSF 251 >gi|229815421|ref|ZP_04445753.1| hypothetical protein COLINT_02469 [Collinsella intestinalis DSM 13280] gi|229808954|gb|EEP44724.1| hypothetical protein COLINT_02469 [Collinsella intestinalis DSM 13280] Length = 262 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 3/169 (1%) Query: 34 RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYID 92 RG++AGP+ V A+ L +GINDSK+++ KRE L +I A + I + ID Sbjct: 85 RGSVAGPLTVCAVSLPSEPRIWGINDSKQLTPAKREMLAVRIAEVATAVGICHIAPSRID 144 Query: 93 KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152 + + +A +A+ AV + + P L+DG P V+KGD+ IAAASI+ Sbjct: 145 EIGMARALREAVAGAVADTGLEPDCVLMDGN--PLGAVPNERDVVKGDAKVACIAAASIV 202 Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AKVTRD LM +YP+Y GY +A+H Q IK+ G S +HR++F Sbjct: 203 AKVTRDELMVELDTEYPEYHLAQSKGYASAEHIQAIKDHGLSPVHRVSF 251 >gi|126697031|ref|YP_001091917.1| ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9301] gi|166226635|sp|A3PEZ1|RNH2_PROM0 RecName: Full=Ribonuclease HII; Short=RNase HII gi|126544074|gb|ABO18316.1| Ribonuclease HII and HIII [Prochlorococcus marinus str. MIT 9301] Length = 205 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 99/180 (55%), Gaps = 5/180 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS-SAII 81 GIDEVGRG++ GPV A + L N G+ DSKK++ KKR+ L KI S+ Sbjct: 19 VGIDEVGRGSIFGPVFSAVVELTEKNKFTLKKLGVTDSKKLTPKKRKLLLPKILLLSSDY 78 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 I +S + IDK I AT ++ A++ L+ P L+DG + + GDS Sbjct: 79 GIGQSSAREIDKLGIRVATELSMIRALKKLKKKPSELLVDGPLLLRPWKGTQKNIESGDS 138 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 +SIA+ASI+AKV+RD LM +KY Y + GY T +H +IK+ G + +HR +F Sbjct: 139 KFISIASASIVAKVSRDNLMVRLERKYSGYLIFKNKGYGTREHLSLIKKNGITKLHRKSF 198 >gi|139439754|ref|ZP_01773145.1| Hypothetical protein COLAER_02176 [Collinsella aerofaciens ATCC 25986] gi|133774904|gb|EBA38724.1| Hypothetical protein COLAER_02176 [Collinsella aerofaciens ATCC 25986] Length = 262 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 3/169 (1%) Query: 34 RGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYID 92 RG++AGP+ V A+ L +GINDSKK++ +RE L KI A I + + ID Sbjct: 85 RGSVAGPLTVCAVCLPMEPRVWGINDSKKLTPARRELLSVKIAEVATAIGFCHIAPKDID 144 Query: 93 KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152 + + +A A+ AV + + P L+DG P V+KGD+ IAAASI+ Sbjct: 145 EMGMARAIRTAVAGAVADTGLEPDCVLMDGN--PLGAVPNERDVVKGDAKIACIAAASIM 202 Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 AKVTRD +M +YP+Y GY + +H + I++ G +HR++F Sbjct: 203 AKVTRDEMMVEYDAEYPEYHLAESKGYASPEHIEAIRKHGLCPLHRVSF 251 >gi|182413915|ref|YP_001818981.1| ribonuclease H [Opitutus terrae PB90-1] gi|177841129|gb|ACB75381.1| Ribonuclease H [Opitutus terrae PB90-1] Length = 261 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 92/215 (42%), Gaps = 37/215 (17%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI--------NDSKKISHKKREELY 72 + + + G+DE GRGALAGPVV A+++ + NDSK+++ REEL+ Sbjct: 16 EGLSGLIGVDEAGRGALAGPVVAGAVMVTKEFLEGRWAVTKAGRVNDSKQLTPAMREELW 75 Query: 73 EKI-----TSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN----------------- 110 + + A +++ NI AT A+ A+E Sbjct: 76 AEFEELVNQGQIHATFGVADVAEVEQLNILGATKLAMQRALEAIYPPSAFQQKTEPDLFT 135 Query: 111 -------LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 Q ++ P ++I GD+ SL IA ASI+AKV RDRLM Sbjct: 136 SAEELAAYQPTVSCRILLDGLAMRKFPYPHHSIISGDARSLCIAMASIVAKVQRDRLMCE 195 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 K+P YGF H GY T +H + + G HR Sbjct: 196 LELKHPGYGFAQHKGYGTPEHCEALLRLGRCAQHR 230 >gi|239917439|ref|YP_002956997.1| ribonuclease HII [Micrococcus luteus NCTC 2665] gi|281414071|ref|ZP_06245813.1| ribonuclease HII [Micrococcus luteus NCTC 2665] gi|239838646|gb|ACS30443.1| ribonuclease HII [Micrococcus luteus NCTC 2665] Length = 250 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 27/215 (12%) Query: 18 VREKNMW--PVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKKREELYE 73 + + + VAG+DEVGRGALAGPVVV A+ L + DSK ++ ++R L Sbjct: 27 LAARGVDRVLVAGMDEVGRGALAGPVVVGVCAVWLPAAGQIPAVRDSKALTDRRRRALVP 86 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRSALIDGRSIP-- 126 +I A +++ AS ID H + A A + P + ++DGR Sbjct: 87 QIEDWAAGVALGEASPAEIDAHGVSAALGLAGRRAWAALCAAVGQEPVALVLDGRDDWLS 146 Query: 127 ------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 LP +++ + ++AAASI AKV RD +M ++P YG+ Sbjct: 147 RSDPDAGPAPAPRPLPPVPTMLVRAEDRCATVAAASIAAKVARDDVMIALDAEHPGYGWA 206 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 + GY +A H+ + E+G S HR ++ NL + Sbjct: 207 GNKGYGSAAHRAALTERGASEQHRRSW----NLGL 237 >gi|317010006|gb|ADU80586.1| ribonuclease HII [Helicobacter pylori India7] Length = 204 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA ++ + G+ DSKK+S KKR L +KI + Sbjct: 4 GIDEAGRGCLAGSLFVAGVVCSEKTALEFLKMGLKDSKKLSKKKRFFLEDKIKTHGEMGF 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + AI +EN + IDG + + +IKG Sbjct: 64 FVVKKSANEIDSLGLGACLKLAIQEILENACSLANEIKIDGNTAFGLNERYPNIQTIIKG 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR MR H + +YG+D + GY T +H + I + G + HR Sbjct: 124 DEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGVTPFHRH 183 Query: 200 TFRPLRN 206 +F L+N Sbjct: 184 SF-TLKN 189 >gi|308276686|gb|ADO26585.1| ribonuclease HII [Corynebacterium pseudotuberculosis I19] Length = 204 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 69/175 (39%), Positives = 94/175 (53%), Gaps = 4/175 (2%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREE 70 E + + + PVAGIDE GRG+ GP+ +AA IL P + DSKK+S + REE Sbjct: 30 TFEGTLEKWGLGPVAGIDEAGRGSCCGPITIAACILPSRPIAALATLTDSKKLSSRMREE 89 Query: 71 LYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 LY I A+ SI S ID++ I A + + A+ L P LID +P L Sbjct: 90 LYPLIKKYAVAWSILHISASEIDRYGIQHANISGMRRAIALLSKQPGYVLIDAMRVP-GL 148 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 C + +I GD+ + IAAAS++AK +RD LM ++YP YG H GY T H Sbjct: 149 TCPSLPIIGGDTAARCIAAASVLAKQSRDELMIDLDREYPGYGLGDHKGYGTKSH 203 >gi|15645936|ref|NP_208115.1| ribonuclease HII [Helicobacter pylori 26695] gi|2500560|sp|P56121|RNH2_HELPY RecName: Full=Ribonuclease HII; Short=RNase HII gi|2314491|gb|AAD08367.1| ribonuclease HII (rnhB) [Helicobacter pylori 26695] Length = 209 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 88/187 (47%), Gaps = 9/187 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG LAG + VA + + + G+ DSKK+S KKR L KI + Sbjct: 9 GIDEAGRGCLAGSLFVAGVACNEKTALEFLKMGLKDSKKLSLKKRFFLEYKIKTHGEVGF 68 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKG 139 + S ID + A+ +EN + IDG + +IKG Sbjct: 69 FVVKKSANEIDSLGLGACLKLAVQEILENGCSLVDEIKIDGNTAFGLNKRYPHIQTIIKG 128 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D IA AS++AK +DR M H + +YG+D + GY T +H + I + G + HR Sbjct: 129 DETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRH 188 Query: 200 TFRPLRN 206 +F L+N Sbjct: 189 SF-TLKN 194 >gi|219121434|ref|XP_002185941.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582790|gb|ACI65411.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 194 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 67/194 (34%), Positives = 102/194 (52%), Gaps = 15/194 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI- 80 V G DE G G +AGPVV A+ + N G++DSK +S K RE +YE I + Sbjct: 1 VIGSDESGSGCIAGPVVTASCCVRDNAADGLWIDGVDDSKSLSTKDRERIYEAIVQNPSR 60 Query: 81 --ISISSASHQYIDKHNIHKATLDAIYHAVEN--------LQVIPRSALIDGRSIPEDLP 130 SI S ID+ + ATL+ ++E+ +++DG P+ Sbjct: 61 YLWSIQERSAAEIDEQSATNATLNCFQDSIEDVVSQLRAEYPHCQPYSIVDGHRSPKVDG 120 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKE 190 C + +GD+ ++A ASI+A+VTRDR M +A KYP Y FD + GYP+ H +++ + Sbjct: 121 CTSRPWKQGDAYVYTVALASILARVTRDRHMALAAVKYPLYDFDRNGGYPSRAHTEILHQ 180 Query: 191 KGPSCIHRLTFRPL 204 G S IHR + +P+ Sbjct: 181 HGYSPIHRQSCKPV 194 >gi|289704584|ref|ZP_06501017.1| ribonuclease HII [Micrococcus luteus SK58] gi|289558704|gb|EFD51962.1| ribonuclease HII [Micrococcus luteus SK58] Length = 250 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 99/215 (46%), Gaps = 27/215 (12%) Query: 18 VREKNMW--PVAGIDEVGRGALAGPVVV--AAIILDPNNIPFGINDSKKISHKKREELYE 73 + + + VAG+DEVGRGALAGPVVV A+ L + DSK ++ ++R L Sbjct: 27 LAARGVDRVLVAGMDEVGRGALAGPVVVGVCAVWLPAAGQIPPVRDSKALTDRRRRVLIP 86 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDA----IYHAVENLQVIPRSALIDGRSIP-- 126 +I A +++ A ID I A A + P + ++DGR Sbjct: 87 QIEDWAAGVALGEAGPAEIDALGISAALGLAGRRAWAALCAAVGQEPVALVLDGRDDWLS 146 Query: 127 ------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 LP + +++ + ++AAASI AKV RD +M +P YG+ Sbjct: 147 RSDPDAGPAPAPRPLPPEPTMLVRAEDRCATVAAASIAAKVARDDVMIALDAAHPGYGWA 206 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 + GY +A H+ + E+G S HR ++ NL + Sbjct: 207 GNKGYGSAAHRAALAERGASEQHRRSW----NLGL 237 >gi|256371394|ref|YP_003109218.1| Ribonuclease H [Acidimicrobium ferrooxidans DSM 10331] gi|256007978|gb|ACU53545.1| Ribonuclease H [Acidimicrobium ferrooxidans DSM 10331] Length = 200 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 65/198 (32%), Positives = 96/198 (48%), Gaps = 15/198 (7%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAI---------ILDPNNIPFGINDSKKISHKK 67 M+ + + + GIDEVGRGA AGPVVV A IL + G+ DSK +S Sbjct: 1 MLHQPSGDRLVGIDEVGRGAWAGPVVVGAARGSVAAAAAIL--AHPRGGVRDSKALSPAA 58 Query: 68 REELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 RE + ++ + + SAS + IDK + A A + A+ ++ +P Sbjct: 59 REAALGALEAAGLELTVGSASAREIDKLGLTGALRLAAHRAL---GAASELEVLLDGRVP 115 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + ++ GD IAAASI+AKV RD M + YGF H GY TA+H++ Sbjct: 116 YVEAGRVHCIVGGDRRHPLIAAASIVAKVRRDAFMVALDELAAGYGFARHKGYGTAEHRR 175 Query: 187 VIKEKGPSCIHRLTFRPL 204 + E G + HR +F P+ Sbjct: 176 ALSEHGVTPWHRRSFGPI 193 >gi|218437055|ref|YP_002375384.1| ribonuclease H [Cyanothece sp. PCC 7424] gi|218169783|gb|ACK68516.1| Ribonuclease H [Cyanothece sp. PCC 7424] Length = 212 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 79/190 (41%), Positives = 110/190 (57%), Gaps = 13/190 (6%) Query: 24 WPVAGIDEVGRGALAGPVV--------VAAIILDPNNIPFGINDSKKISHKKREELYEKI 75 +AG+DEVGRGAL GPVV A G+ DSK++S K+R EL ++I Sbjct: 22 TLIAGVDEVGRGALFGPVVAGAVVVPVSAI----DQLTQLGVKDSKQLSPKRRVELAQQI 77 Query: 76 TSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 AI +S A+ ID+ NI +A+L A+Y AV L++ P L+DGR +L + Sbjct: 78 KGLAIDSHVSFATVGEIDQINILQASLKAMYRAVVKLKINPAVCLVDGRHPLPNLEIRQE 137 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 +IKGD S IAAASI+AKV RD L+ +KYP Y ++ GY T +H++ + + G S Sbjct: 138 NIIKGDERSPVIAAASILAKVWRDNLIVRLAQKYPQYDLIANKGYGTLRHREALLKYGAS 197 Query: 195 CIHRLTFRPL 204 HRL+FRP Sbjct: 198 PQHRLSFRPC 207 >gi|315452719|ref|YP_004072989.1| ribonuclease HII [Helicobacter felis ATCC 49179] gi|315131771|emb|CBY82399.1| ribonuclease HII [Helicobacter felis ATCC 49179] Length = 195 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 60/186 (32%), Positives = 84/186 (45%), Gaps = 8/186 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG G + VA + D N + + +SK++S KR E +I Sbjct: 1 MILGIDEAGRGCWCGSLFVAGVSCDQNVASAFVRLELKESKQLSRTKRFEFATQIIQDTR 60 Query: 81 IS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG--RSIPEDLPCQAFAV 136 I+ + S S ID + +AI V L I L + A+ Sbjct: 61 ITSVVVSKSAPEIDHKGLSVCMQEAITEIVSKLPTIKHVRLDGNTLFKLEFAHLESFEAI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA ASI+AK +DR M + ++YP+YGF H GY T H I + G Sbjct: 121 IKGDDKIPQIAMASILAKAHKDREMSVLDERYPEYGFARHCGYGTCTHALAIAKYGLIQE 180 Query: 197 HRLTFR 202 HR +F+ Sbjct: 181 HRKSFK 186 >gi|940885|gb|AAC44577.1| RnhB [Vibrio cholerae C6706] Length = 162 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 95/158 (60%), Gaps = 2/158 (1%) Query: 50 PNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAV 108 PN G+NDSKK+S KKR L+ +I A ++ S Q ID+ NI +AT+ A+ AV Sbjct: 1 PNRPIMGLNDSKKLSEKKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAV 60 Query: 109 ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 L++ P LIDG IP+ +A AV+KGD I+AASIIAKV RD+ M K+Y Sbjct: 61 AGLRIQPDLVLIDGNKIPKLPM-EAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQY 119 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 P +GF +H GYPTA H I++ G HR +F P++ Sbjct: 120 PQFGFANHKGYPTAAHFAAIEQHGVIEQHRKSFGPVKR 157 >gi|225155690|ref|ZP_03724178.1| Ribonuclease H [Opitutaceae bacterium TAV2] gi|224803484|gb|EEG21719.1| Ribonuclease H [Opitutaceae bacterium TAV2] Length = 278 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 66/215 (30%), Positives = 97/215 (45%), Gaps = 37/215 (17%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDP--------NNIPFGINDSKKISHKKREELY 72 + G+DE GRGALAGPVV AA+++ + +NDSK++S +R+ L Sbjct: 41 AGHAELIGVDEAGRGALAGPVVAAAVLVRRVFLESRWVAHNASRVNDSKQLSAPERDALA 100 Query: 73 EKITSSA-----IISISSASHQYIDKHNIHKATLDAIYHAVEN----------------- 110 + + A + A I++ NI AT A+ A+E Sbjct: 101 FEFETLAVENAIRVGCGVAEVSEIEQFNILGATKLAMRRALECIHPPEAFQQQVEPDLFS 160 Query: 111 -------LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + +I + P ++KGD+ SL IA ASIIAKVTRDRL+ Sbjct: 161 TEAELAAWRNRVSCRIIIDGLPLKSFPYPHLGIVKGDARSLCIAMASIIAKVTRDRLLTE 220 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 ++P YGF H GY T +H++ + GP HR Sbjct: 221 LDARHPGYGFAQHKGYGTEEHREAVLRLGPCVQHR 255 >gi|309811499|ref|ZP_07705281.1| ribonuclease HII [Dermacoccus sp. Ellin185] gi|308434550|gb|EFP58400.1| ribonuclease HII [Dermacoccus sp. Ellin185] Length = 233 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 97/220 (44%), Gaps = 27/220 (12%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV------AAIILDPNNIPFGINDSKKI 63 P LE + VAG+DEVGRGALAGPV V AA + +P G+ DSK + Sbjct: 6 PTLRLERQLLRTGYTLVAGMDEVGRGALAGPVSVGVSVVDAA----TSTVPQGVKDSKLV 61 Query: 64 SHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG 122 KR +L ++ A ++ AS ID + +A A A+ L V P ++DG Sbjct: 62 PEPKRPDLARRVRRWALDGAVGHASPTEIDALGMTRALRLAGTRALAQLSVRPDVVILDG 121 Query: 123 RSIP----------------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 + IK D S+A AS++AKV RD +M A + Sbjct: 122 KHDWLSEPETVGLLGLLEPESAPTWHVVTQIKADMRCSSVAGASLLAKVERDAMMVDAAR 181 Query: 167 KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 +P YG+ + GY H I G +HR +++ R+ Sbjct: 182 DHPVYGWGINKGYSAPDHLAAIAAHGACDLHRRSWKTFRD 221 >gi|332701663|ref|ZP_08421751.1| Ribonuclease H [Desulfovibrio africanus str. Walvis Bay] gi|332551812|gb|EGJ48856.1| Ribonuclease H [Desulfovibrio africanus str. Walvis Bay] Length = 211 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 75/190 (39%), Positives = 105/190 (55%), Gaps = 4/190 (2%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DE GRG LAGPVV AA++L G+ DSK +S +R L I + A Sbjct: 7 ADKAGRVAGVDEAGRGCLAGPVVAAAVVLPAYVKLPGLADSKLLSPAERARLEPLIKTRA 66 Query: 80 -IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL---PCQAFA 135 ++ + ID+ N+ +ATL A+ AV L++ P L+DG + A Sbjct: 67 LAWAVGVSWPPEIDERNVLRATLLAMSRAVRALKLSPDELLVDGNQCIPEGLVGFIPQRA 126 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 ++ GD + I+AAS++AK RDRLM + YP YGF H GY T +H Q + E GPS Sbjct: 127 IVDGDRLVRCISAASVLAKTFRDRLMGKLERLYPGYGFARHKGYGTREHLQALVELGPSR 186 Query: 196 IHRLTFRPLR 205 +HRLTFR ++ Sbjct: 187 MHRLTFRGVK 196 >gi|57505767|ref|ZP_00371693.1| ribonuclease HII [Campylobacter upsaliensis RM3195] gi|57016040|gb|EAL52828.1| ribonuclease HII [Campylobacter upsaliensis RM3195] Length = 174 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 6/176 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 GIDE GRGALAGP+ +AA L + DSKK++ KKR++LY +I S++ I + Sbjct: 3 VGIDEAGRGALAGPLFIAACELLK--PLNELKDSKKLNEKKRKKLYGEIISNSNYLILAF 60 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 S+ ID + K + +L + + DG + L + +IK DS+ + Sbjct: 61 SNAQIDTLGLSKC--LQKGLEIIHLHFEKQRKIFDGNTNYGVLGIEN--LIKADSLIAEV 116 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +AASI+AKV+RD++M+ KYP YGF+ H Y T H++ I + G +HRL+F+ Sbjct: 117 SAASILAKVSRDKVMQFLALKYPQYGFEIHKAYGTKAHRESIAKYGACKLHRLSFK 172 >gi|294790566|ref|ZP_06755724.1| ribonuclease HII [Scardovia inopinata F0304] gi|294458463|gb|EFG26816.1| ribonuclease HII [Scardovia inopinata F0304] Length = 279 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 112/272 (41%), Gaps = 80/272 (29%) Query: 10 PHFELEAMVRE--KNMWPVAGIDEVGRGALAGPVVVAAIIL------DPNN--------- 52 PH+ +EA + N + G DEVGRG LAGPV+V A P+ Sbjct: 3 PHWRVEAALAAGPDNPQWIIGCDEVGRGCLAGPVMVGACAFRLPDLRPPDYASEHKFDYE 62 Query: 53 ----------IPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATL 101 IP G+ DSK ++ KKRE LY+ + S + ++ SAS++ ID+ I A Sbjct: 63 SDYESAMTASIPSGLKDSKLLTEKKREALYDPLASWSDTWAVGSASNKEIDQVGIISALG 122 Query: 102 DAIYHAVENLQ------------------------------------------------- 112 A A++ + Sbjct: 123 LAAVRALDQIGQTISGSSSEAVDASEETEDTDDHSSREARGLSQLPASLILDGPYDYISP 182 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD-- 170 ++ L D V+KGD S+AAAS++AKVTRDR M K P Sbjct: 183 ILQSILLPDQIRSRFAFRLSVTTVVKGDQTCASVAAASVMAKVTRDRYMIRLADKNPQWE 242 Query: 171 -YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 YG+ + GY TA+H++ IK+ GP+ HR+++ Sbjct: 243 PYGWARNKGYGTAQHRRAIKDLGPTSYHRVSW 274 >gi|291456102|ref|ZP_06595492.1| ribonuclease HII [Bifidobacterium breve DSM 20213] gi|291382511|gb|EFE90029.1| ribonuclease HII [Bifidobacterium breve DSM 20213] Length = 286 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 105/283 (37%), Gaps = 87/283 (30%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAII----LDPNNI------- 53 + P +LE + + + G DEVGRGALAGPV+V A I L P+ Sbjct: 1 MMITPTLDLERSLASQGYDLIVGFDEVGRGALAGPVMVGCAAIWARDLKPDADGELAQAA 60 Query: 54 -----------------------------PFGINDSKKISHKKREELYEKIT-SSAIISI 83 P G+ DSK ++ +RE +++++ A ++ Sbjct: 61 GSAASSRVSGDNGTDAGVITPNPAPYLSVPAGVADSKMLTEHRREAIFDELCSWCAAYAV 120 Query: 84 SSASHQYIDKHNIHKA-------------TLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +S+ ID+ I A + + + +GR +P P Sbjct: 121 GQSSNAEIDEWGITYALGVAALRALNQVERDLGVGSEFGSPREGSCLTATEGRPLPSRRP 180 Query: 131 CQAFAVIKGDSISLSIAAASIIA-----------------------------KVTRDRLM 161 A++ G S ++ A + A KVTRDRLM Sbjct: 181 ITIGAILDGPSDYITKALNTFDAPDVPIPADVTTKVKGDQHCATVATAAVIAKVTRDRLM 240 Query: 162 RIAHK---KYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 + +Y Y +D + GY +A H+ I E GP+ +HR ++ Sbjct: 241 VSIAQGNPRYAAYEWDHNKGYGSAAHRAAIAEYGPTPLHRTSW 283 >gi|293189838|ref|ZP_06608552.1| ribonuclease HII [Actinomyces odontolyticus F0309] gi|292821253|gb|EFF80198.1| ribonuclease HII [Actinomyces odontolyticus F0309] Length = 223 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 69/215 (32%), Positives = 100/215 (46%), Gaps = 26/215 (12%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA-AII-LDPNNIPFGINDSKKISHKKR 68 +LE + + VAG+DEVGRGALAGPV V A I +D +P G+ DSK ++ ++R Sbjct: 5 SRDLEVSLARR-WGIVAGMDEVGRGALAGPVAVGVAFIGIDAAPVPEGLTDSKALTTRRR 63 Query: 69 EELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAV------------------- 108 E L + + + + AS Q ID I A A + A+ Sbjct: 64 EALVDPVREWTLACAVGYASPQEIDDWGIIAALRLAGWRALAEVASHGLVPGGVLLDGSH 123 Query: 109 -ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 IDG P + +K D+ +AAAS++AKV RD LM + Sbjct: 124 DWLSAPDDLFGAIDGPGDPFGVDLPVQMQVKADASCAVVAAASVLAKVERDHLMAEL--E 181 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 P YG+ S+ GY +A H + I E G S HR +++ Sbjct: 182 DPGYGWASNKGYGSAAHTRAIVELGVSDQHRRSWK 216 >gi|332670021|ref|YP_004453029.1| ribonuclease H [Cellulomonas fimi ATCC 484] gi|332339059|gb|AEE45642.1| Ribonuclease H [Cellulomonas fimi ATCC 484] Length = 272 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 22/217 (10%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISH 65 PH E ++ VAG+DEVGRG+LAGPV V +++D P G+ DSK ++ Sbjct: 18 PGPHLRHERVLLRDGARLVAGMDEVGRGSLAGPVSVGVVVVDVATRSAPRGVADSKLLTP 77 Query: 66 KKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 R L + + + AS + ID I A A A+E + + Sbjct: 78 AARTALLPALGRWGVARAVGHASAEEIDAVGIIAALRLAGTRALETVHAAVGPVDVVLLD 137 Query: 125 IPEDL-------------------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 D P + +K D ++AAAS++AK RD +M Sbjct: 138 GSHDWLSGPTQQDLFAAVDASAPTPPRVLTRVKADRTCATVAAASVLAKCERDAVMVDLA 197 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 ++P+Y +D + GY + H +++ GP +HR ++R Sbjct: 198 ARHPEYRWDENKGYSSPDHLAALRDHGPCVLHRRSWR 234 >gi|326333667|ref|ZP_08199904.1| ribonuclease HII [Nocardioidaceae bacterium Broad-1] gi|325948573|gb|EGD40676.1| ribonuclease HII [Nocardioidaceae bacterium Broad-1] Length = 218 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 93/205 (45%), Gaps = 21/205 (10%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKIT 76 + + +DEVGRGAL GPV + +++ P G+ DSK ++ + RE L K+ Sbjct: 2 LRDGITHLGAVDEVGRGALCGPVSIGIVVISAATRTAPQGVRDSKLLTPEARETLAPKVR 61 Query: 77 SSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--------- 126 A ++ A ID+ I A A A+ L V P + L+DG Sbjct: 62 RWAVDSAVGHALASEIDEVGIMAAMRLAGQRALSALDVRPDALLLDGNHNYLTPPAQEGL 121 Query: 127 ---------EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 E +IK D ++AAASI+AK +RD LM H++YPDY + + Sbjct: 122 FGEVSAMVEEIEVPPVTTMIKADMKCAAVAAASILAKTSRDALMVALHEEYPDYAWADNK 181 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFR 202 GY H ++ GPS HR ++ Sbjct: 182 GYSAPAHIAALERLGPSAYHRRSWS 206 >gi|227497524|ref|ZP_03927752.1| possible ribonuclease H [Actinomyces urogenitalis DSM 15434] gi|226833027|gb|EEH65410.1| possible ribonuclease H [Actinomyces urogenitalis DSM 15434] Length = 253 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 92/232 (39%), Gaps = 42/232 (18%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD---PNNIPFGINDSKKISH 65 RP ELE + VAG+DEVGRGALAGPV V ++D P++ P G+ DSK++S Sbjct: 12 RPDRELETTLLAS-HRVVAGMDEVGRGALAGPVSVGVALVDTTTPDHFPHGLADSKQLSP 70 Query: 66 KKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +RE L +++ A ID + A A A+ + + Sbjct: 71 TRREALQAPCRDWVLDCAVAHAWPAEIDALGMVGALRLAGLRALVEVASRGHRPDVVILD 130 Query: 125 IPEDL-----------------------------------PCQAFAVIKGDSISLSIAAA 149 D +K D+ +AAA Sbjct: 131 GVADWLSEPATDLLTELSASQPVHPAVAEVRHQMDSLGLATPPVRMQVKADARCAVVAAA 190 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 S++AKV RD LM P YG+ S+ GY +A H + G S HR ++ Sbjct: 191 SVLAKVERDALMTELDD--PGYGWASNKGYASAAHVAGLGRLGASDQHRRSW 240 >gi|269955973|ref|YP_003325762.1| Ribonuclease H [Xylanimonas cellulosilytica DSM 15894] gi|269304654|gb|ACZ30204.1| Ribonuclease H [Xylanimonas cellulosilytica DSM 15894] Length = 272 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 91/223 (40%), Gaps = 33/223 (14%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV------AAIILDPNNIPFGINDSK 61 P E + VAG+DEVGRGALAGPV V AA P G+ DSK Sbjct: 16 PTPTLRTERALISSGARLVAGMDEVGRGALAGPVSVGVVVVDAA----TRTAPKGVADSK 71 Query: 62 KISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 ++ RE L ++ + ++ A ID H I A A A+ ++ + + Sbjct: 72 LLTPAAREALVPQLQRWPVAWAVGHAGPAEIDAHGIIAALRIAGRRALSQVRRVCGDVDL 131 Query: 121 DGRSIPEDLPCQ----------------------AFAVIKGDSISLSIAAASIIAKVTRD 158 D + ++K D S+AAAS++AKV RD Sbjct: 132 VLLDGSHDWLTRPQADLFEAVELDVAGAPETDPTVRTLVKADLQCASVAAASVLAKVERD 191 Query: 159 RLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 L+ ++YP Y +D + GY H ++ G + HR ++ Sbjct: 192 LLLTRLARQYPAYAWDQNKGYSAPAHLDALRLHGTTPQHRRSW 234 >gi|86742269|ref|YP_482669.1| ribonuclease HII [Frankia sp. CcI3] gi|123764526|sp|Q2J702|RNH2_FRASC RecName: Full=Ribonuclease HII; Short=RNase HII gi|86569131|gb|ABD12940.1| Ribonuclease H [Frankia sp. CcI3] Length = 240 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 2/195 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKRE 69 F E + + PVAG+DE GRGA AGP+V+AA+IL P + DSK ++ + RE Sbjct: 15 FGYERALNRHGLGPVAGVDEAGRGACAGPLVIAAVILAPEARQRLARLADSKLLTEQIRE 74 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 ++E + ++A + ++ Sbjct: 75 SVFEDVMAAAAAWSTVVISAAEIDRVGLHVANITGMRRAVARLSARPGYVLTDGFAVAGF 134 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 ++ AV+KGD + +AAAS++AKVTRDR+MR H +Y +Y F H GY TA H + Sbjct: 135 GVESLAVVKGDRVVACVAAASVVAKVTRDRIMRALHTRYAEYDFAQHKGYVTAAHAAALA 194 Query: 190 EKGPSCIHRLTFRPL 204 GP HR+++ + Sbjct: 195 RCGPCDEHRMSYVNV 209 >gi|183601863|ref|ZP_02963232.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis HN019] gi|219682777|ref|YP_002469160.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis AD011] gi|241190353|ref|YP_002967747.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195759|ref|YP_002969314.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218748|gb|EDT89390.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis HN019] gi|219620427|gb|ACL28584.1| ribonuclease [Bifidobacterium animalis subsp. lactis AD011] gi|240248745|gb|ACS45685.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250313|gb|ACS47252.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793340|gb|ADG32875.1| ribonuclease HII [Bifidobacterium animalis subsp. lactis V9] Length = 258 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 99/253 (39%), Gaps = 61/253 (24%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNN--IPFGINDSKK 62 P F LE + + G DEVGRG+LAGPV+V A LD +P + DSK Sbjct: 3 PSFALERQIAADGFDVIVGFDEVGRGSLAGPVMVGAAAFLARNLDEAQTAMPQYLADSKT 62 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------------ 109 ++ +RE LYE + + +I SAS+ ID I A A A++ Sbjct: 63 LTEHRRESLYEPLQAWVDGFAIGSASNAEIDAWGISHALGIAALRALDGVERALGMGSPG 122 Query: 110 ---------NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA------- 153 + A A++ G + +S A + A Sbjct: 123 DSEIRGFDERCKYSGTWAYTKHSPQQHADGLHVGAILDGPNDYISKALGTFEAPAVPMPA 182 Query: 154 ----------------------KVTRDRLMRIA---HKKYPDYGFDSHVGYPTAKHQQVI 188 KVTRDRLM H +Y YG++ + GY + H++ I Sbjct: 183 QVRTLVKADAQCASVAAAAVLAKVTRDRLMEQLARDHAEYARYGWERNKGYGSKAHREAI 242 Query: 189 KEKGPSCIHRLTF 201 + GPS +HR+++ Sbjct: 243 AQCGPSDLHRVSW 255 >gi|289178076|gb|ADC85322.1| Ribonuclease HII [Bifidobacterium animalis subsp. lactis BB-12] Length = 290 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 99/253 (39%), Gaps = 61/253 (24%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII-----LDPNN--IPFGINDSKK 62 P F LE + + G DEVGRG+LAGPV+V A LD +P + DSK Sbjct: 35 PSFALERQIAADGFDVIVGFDEVGRGSLAGPVMVGAAAFLARNLDEAQTAMPQYLADSKT 94 Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE------------ 109 ++ +RE LYE + + +I SAS+ ID I A A A++ Sbjct: 95 LTEHRRESLYEPLQAWVDGFAIGSASNAEIDAWGISHALGIAALRALDGVERALGMGSPG 154 Query: 110 ---------NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA------- 153 + A A++ G + +S A + A Sbjct: 155 DSEIRGFDERCKYSGTWAYTKHSPQQHADGLHVGAILDGPNDYISKALGTFEAPAVPMPA 214 Query: 154 ----------------------KVTRDRLMRIA---HKKYPDYGFDSHVGYPTAKHQQVI 188 KVTRDRLM H +Y YG++ + GY + H++ I Sbjct: 215 QVRTLVKADAQCASVAAAAVLAKVTRDRLMEQLARDHAEYARYGWERNKGYGSKAHREAI 274 Query: 189 KEKGPSCIHRLTF 201 + GPS +HR+++ Sbjct: 275 AQCGPSDLHRVSW 287 >gi|258653296|ref|YP_003202452.1| ribonuclease H [Nakamurella multipartita DSM 44233] gi|258556521|gb|ACV79463.1| Ribonuclease H [Nakamurella multipartita DSM 44233] Length = 244 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 31/225 (13%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHK 66 RPH +E + + +A +DEVGRGALAGPV V +++ P +P G+ DSK ++ + Sbjct: 6 RPHLRVEKQLMRDGVTRLAAMDEVGRGALAGPVSVGVVVVTPEVRRVPPGLADSKLLTPE 65 Query: 67 KREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 R+ L + ++ AS ID I A A A+ L + L+DG Sbjct: 66 ARQRLVAPVRRWVQEYAVGHASADEIDAIGIIAALRTAGRRALAELSGPVDAILLDGNHN 125 Query: 126 PEDLPCQ----------------------------AFAVIKGDSISLSIAAASIIAKVTR 157 P IK D ++A AS++AK R Sbjct: 126 YLREPAAPAAAPDPLAAPLFEVAAEAVAPADPEPAVHVRIKADMTCAAVAGASVLAKTER 185 Query: 158 DRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 D ++ YP YGF + GY T +H ++E GP +HR ++R Sbjct: 186 DAILTGLGPDYPAYGFAVNKGYGTPEHLAALREHGPCAVHRRSWR 230 >gi|37521076|ref|NP_924453.1| ribonuclease H [Gloeobacter violaceus PCC 7421] gi|35212072|dbj|BAC89448.1| ribonuclease H [Gloeobacter violaceus PCC 7421] Length = 198 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 6/181 (3%) Query: 29 IDEVGRGALAGPVVVAAIILDPNNIPF---GINDSKKISHKKREELYEKITSSAI-ISIS 84 +DEVGRGALAG VV AA++L P+ GI DSK + +RE L+E+I + A + I Sbjct: 1 MDEVGRGALAGCVVAAAVVLPPDIPLAALAGITDSKLLDRPRREALHERILALASAVGIG 60 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 SAS ID+ NI +AT A+ A+ V P ++ +L A++ GD SL Sbjct: 61 SASVGEIDRLNILRATALAMGRALHR--VAPVEHVLVDGLPVAELGITQTAIVGGDRTSL 118 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 SIAAASI+AKVTRDR M +++ +G+ ++ GY TA H++ + G + +HR +F P+ Sbjct: 119 SIAAASIVAKVTRDRWMERLDRRFAGFGWATNAGYGTAFHREALARLGVTPLHRRSFAPV 178 Query: 205 R 205 R Sbjct: 179 R 179 >gi|262167732|ref|ZP_06035434.1| ribonuclease HII [Vibrio cholerae RC27] gi|262023797|gb|EEY42496.1| ribonuclease HII [Vibrio cholerae RC27] Length = 157 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 68/152 (44%), Positives = 92/152 (60%), Gaps = 2/152 (1%) Query: 56 GINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVI 114 G+NDSKK+S KKR L+ +I A ++ S Q ID+ NI +AT+ A+ AV L++ Sbjct: 2 GLNDSKKLSEKKRLALFPEIQVKALAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQ 61 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 P LIDG IP+ +A AV+KGD I+AASIIAKV RD+ M K+YP +GF Sbjct: 62 PDLVLIDGNKIPKLPM-EAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFA 120 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 H GYPTA H I++ G HR +F P++ Sbjct: 121 KHKGYPTAAHFAAIEQHGVIEQHRKSFGPVKR 152 >gi|224437531|ref|ZP_03658489.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818] gi|313143983|ref|ZP_07806176.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818] gi|313129014|gb|EFR46631.1| ribonuclease HII [Helicobacter cinaedi CCUG 18818] Length = 239 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 84/230 (36%), Gaps = 52/230 (22%) Query: 27 AGIDEVGRGALAGPVVVAAII-LDPNNIPFGINDSKKISHKKREELYEKITSSAI----- 80 AGIDE GRG + G + VA +I + N FG DSKK+S K+RE +Y+ + S Sbjct: 4 AGIDEAGRGCICGALFVAGVIGREENIAHFGAKDSKKLSPKQRERIYQTLLESQHKGEIG 63 Query: 81 --------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 I K+ I + A + + + + Sbjct: 64 LFVAQIEAWEIDKFGLSIAMKNGIEQILCRIADFATLQNLIGQNVEQNTAKHNLLEQDVE 123 Query: 133 A--------------------------------------FAVIKGDSISLSIAAASIIAK 154 ++K D I ++ ASI+AK Sbjct: 124 QNPTDSTDSKNALQEIIMDGNTTFQAKIPHILTQSGVGVQTLVKADDIMPIVSCASIVAK 183 Query: 155 VTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 V++DR M K YP Y + GY T +H++ I + G HR +F+ L Sbjct: 184 VSKDRQMHELDKLYPQYFLAKNKGYGTLQHKKAIAKNGYCPHHRKSFKIL 233 >gi|1296968|emb|CAA65177.1| rnhB [Porphyromonas gingivalis] Length = 168 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 85/159 (53%), Gaps = 1/159 (0%) Query: 47 ILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIY 105 IL + +NDSK++S K+R L I S I I S Q ID+ NI +A+ A++ Sbjct: 1 ILPADFSHPLLNDSKQLSEKQRYTLRPVIESETIGWGIGIVSPQEIDEINILRASFLAMH 60 Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 A+E L P LIDG ++ GD+ SIAAASI+AK RD M + Sbjct: 61 RAIEQLPFRPERLLIDGNRFDPFEQIPHHCIVGGDARYRSIAAASILAKTYRDDSMLRLN 120 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 K +P YG++ + GYP+ H+ I+ G S HRLTFR + Sbjct: 121 KDFPMYGWERNKGYPSPAHKSAIRRFGVSPHHRLTFRGV 159 >gi|300869375|ref|ZP_07113962.1| Ribonuclease HII [Oscillatoria sp. PCC 6506] gi|300332602|emb|CBN59160.1| Ribonuclease HII [Oscillatoria sp. PCC 6506] Length = 178 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 66/178 (37%), Positives = 92/178 (51%), Gaps = 12/178 (6%) Query: 41 VVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHN 95 +V AA IL P + G+ DSK++S R L KI + A I AS + ID+ N Sbjct: 1 MVAAACILPPEALEELTALGVRDSKQLSPAARSRLAVKIQAMAVDCQIGVASVREIDRIN 60 Query: 96 IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-------AFAVIKGDSISLSIAA 148 I +A+L A+ A+ L +P LIDG +L +I+GD SL IAA Sbjct: 61 ILQASLLAMKRAILKLNTLPELCLIDGNQRIPNLVVPKAGYPYAQQTMIQGDRRSLVIAA 120 Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 ASI+AKV RD L+ K+P+Y ++ GY T KH+ ++ G S HR +F P R Sbjct: 121 ASIVAKVWRDELIVRMAVKFPEYDLTNNKGYGTPKHRLGLERYGVSPFHRTSFSPCRK 178 >gi|313680749|ref|YP_004058488.1| RNAse HII [Oceanithermus profundus DSM 14977] gi|313153464|gb|ADR37315.1| RNase HII [Oceanithermus profundus DSM 14977] Length = 197 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 71/197 (36%), Positives = 111/197 (56%), Gaps = 6/197 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LE + + VAG+DE GRGALAGPVV AA++L P P+ DSK+++ ++RE+L + Sbjct: 2 LEREFWRQGLR-VAGVDEAGRGALAGPVVAAAVVLAPGRHPY--RDSKRLTPRRREQLLD 58 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 + A + + S +D+ + +AT A A+ L++ P++ + D + + Sbjct: 59 HLQRHALAWGVGACSAAEVDRLGVLRATHCAAQRALARLRIAPQALVTD--YLFLETELP 116 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 A + ++ S S+AAASI+AKV RDR+M H++YP YGF H GY TA+H + G Sbjct: 117 LLAPARAEAQSPSVAAASILAKVVRDRIMVGLHRRYPGYGFARHKGYGTAEHLACLARLG 176 Query: 193 PSCIHRLTFRPLRNLSV 209 P HR F P+ + Sbjct: 177 PCPQHRRRFAPVAQAGL 193 >gi|154509166|ref|ZP_02044808.1| hypothetical protein ACTODO_01687 [Actinomyces odontolyticus ATCC 17982] gi|153798800|gb|EDN81220.1| hypothetical protein ACTODO_01687 [Actinomyces odontolyticus ATCC 17982] Length = 223 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 68/215 (31%), Positives = 98/215 (45%), Gaps = 26/215 (12%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVA-AII-LDPNNIPFGINDSKKISHKKR 68 +LE + + VAG+DEVGRGALAGPV V A I +D +P G+ DSK ++ ++R Sbjct: 5 SRDLEVSLARR-WGIVAGMDEVGRGALAGPVAVGVAFIGIDAAPVPEGLTDSKALTARRR 63 Query: 69 EELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAV------------------- 108 E L + + + + AS Q ID I A A A+ Sbjct: 64 EALVDPVREWTLACAVGYASPQEIDDWGIIAALRLAGRRALAEVASHGLVPGGVLLDGSH 123 Query: 109 -ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 IDG P + +K D+ +AAAS++AKV RD LM + Sbjct: 124 DWLSAPDDLFGAIDGPGDPFGVDLPVQMQVKADASCAVVAAASVLAKVERDHLMAEL--E 181 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 P YG+ S+ GY + H + I E G S HR +++ Sbjct: 182 DPGYGWASNKGYGSTAHTRAIVELGVSDQHRRSWK 216 >gi|315185664|gb|EFU19432.1| RNase HII [Spirochaeta thermophila DSM 6578] Length = 193 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 63/182 (34%), Positives = 87/182 (47%), Gaps = 6/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V GIDEVGRG LAGPVV AA++L P G+ DSKK+S ++RE L+ I +A Sbjct: 4 VCGIDEVGRGPLAGPVVAAAVVLTPGTSLPGLKDSKKLSPEERERLFPLIQEAAAAVGVG 63 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIP------RSALIDGRSIPEDLPCQAFAVIKG 139 + + + + + ++ A AV+K Sbjct: 64 WAWPHEVDRLNIHNATLKAMERAYEMLIQKLSPSLVPTEVVIDGRHAPPSITHARAVVKA 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 D+ + AASI+AKV RD M+I H+ P+Y F H GYPT H++ I G IHR Sbjct: 124 DTFVPEVMAASIVAKVFRDEWMKIYHRFLPEYTFSQHKGYPTRLHRERILTIGSCPIHRR 183 Query: 200 TF 201 TF Sbjct: 184 TF 185 >gi|300813510|ref|ZP_07093850.1| ribonuclease HII [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512378|gb|EFK39538.1| ribonuclease HII [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 168 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 94/168 (55%), Gaps = 5/168 (2%) Query: 35 GALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDK 93 G+L G V+ AII+ ++ G+NDSKK++ KKR+ELY KI + + I A + IDK Sbjct: 1 GSLFGDVLSCAIIMKEDSNIEGVNDSKKLTAKKRKELYNKILKDSLAVGIGRADAKTIDK 60 Query: 94 HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ----AFAVIKGDSISLSIAAA 149 NI AT ++ A+ENL+ + ++ + + + ++IKGD SIA A Sbjct: 61 LNIKMATHLSMVRAIENLRDSQGNLVVPDLVLIDAENIETTIFQHSIIKGDENCYSIACA 120 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIH 197 SIIAKV RD L YP YG + H GY T H++ +K GPS +H Sbjct: 121 SIIAKVYRDSLCDKWATIYPGYGIEKHKGYGTKFHREALKAYGPSPMH 168 >gi|75764884|ref|ZP_00744243.1| Ribonuclease HII [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487629|gb|EAO51486.1| Ribonuclease HII [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 167 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 4/167 (2%) Query: 42 VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKAT 100 + AA+ + + DSKK+S KRE Y++I AI I + S Q ID NI++AT Sbjct: 1 MTAAVSF-QRFLYSRLYDSKKLSEAKRERFYDEIKVQAIAIGVGIVSPQVIDDINIYQAT 59 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 A+ AV L P+ LID +P P ++IKGD+ S+SI+AASIIAKVTRDR+ Sbjct: 60 KQAMLDAVAYLSCTPQHLLIDAMKLPT--PIPQTSIIKGDAKSISISAASIIAKVTRDRM 117 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 M+ +KYP+YGF+ H+GY T +H + I+ G HR +F P++++ Sbjct: 118 MKELGEKYPEYGFEQHMGYGTKQHLEAIEVHGVLDEHRKSFAPIKDM 164 >gi|307718734|ref|YP_003874266.1| ribonuclease HII [Spirochaeta thermophila DSM 6192] gi|306532459|gb|ADN01993.1| ribonuclease HII [Spirochaeta thermophila DSM 6192] Length = 193 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 64/182 (35%), Positives = 87/182 (47%), Gaps = 6/182 (3%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V GIDEVGRG LAGPVV AA++L P G+ DSKK+S ++RE L+ I +A Sbjct: 4 VCGIDEVGRGPLAGPVVAAAVVLTPGTSLPGLKDSKKLSPEERERLFPLILEAAAAVGVG 63 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIP------RSALIDGRSIPEDLPCQAFAVIKG 139 + + + + + ++ A AV+K Sbjct: 64 WAWPHEVDRFNIHNATLKAMERAYEMLIQKLSPSLVPTEVVIDGRHAPPSITHARAVVKA 123 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRL 199 DS + AASI+AKV RD M+I H+ P+Y F H GYPT H++ I G IHR Sbjct: 124 DSFVPEVMAASIVAKVFRDEWMKIYHRFLPEYTFSQHKGYPTRLHRERILTIGSCPIHRR 183 Query: 200 TF 201 TF Sbjct: 184 TF 185 >gi|322379000|ref|ZP_08053403.1| ribonuclease HII [Helicobacter suis HS1] gi|322380765|ref|ZP_08054871.1| ribonuclease HII [Helicobacter suis HS5] gi|321146769|gb|EFX41563.1| ribonuclease HII [Helicobacter suis HS5] gi|321148492|gb|EFX42989.1| ribonuclease HII [Helicobacter suis HS1] Length = 194 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 8/186 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG L G + VA + G+ +SK++ +KR E ++I Sbjct: 1 MILGIDEAGRGCLCGSLFVAGVGCTAEIAAFFNKQGLKESKQLKREKRFEFAKQIQEHRE 60 Query: 81 I---SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA-FAV 136 + ++ ++ + K + ++ + + A+ Sbjct: 61 VLSLVVAKSALEIDTKGLSVCVQEAITQIVLRFPHILHVKLDGNTLFHLHFSHLRYFEAI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 IKGD IA ASI+AK +D+ M K YP YGF H GY T +H++ I G Sbjct: 121 IKGDCQITQIAMASILAKAAKDKEMLALDKAYPAYGFVRHCGYGTQEHRKAITHLGYLKE 180 Query: 197 HRLTFR 202 HR +F+ Sbjct: 181 HRKSFK 186 >gi|320532025|ref|ZP_08032917.1| ribonuclease HII [Actinomyces sp. oral taxon 171 str. F0337] gi|320135759|gb|EFW27815.1| ribonuclease HII [Actinomyces sp. oral taxon 171 str. F0337] Length = 240 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 94/226 (41%), Gaps = 36/226 (15%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISH 65 RP LE + E V G+DEVGRGALAGPV V I+ + P G+ DSK+++ Sbjct: 8 RPDRCLEKALLET-YDCVGGLDEVGRGALAGPVSVGLAIVARRTDDGFPEGLADSKQLTA 66 Query: 66 KKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + R L + + S +++ AS ID+ I A A A++ + + I Sbjct: 67 RARRGLVDPVRSWLVDHAVAHASPAEIDERGIVGALRMAGLRALQQVADRGHAPGIIILD 126 Query: 125 IPEDL-----------------------------PCQAFAVIKGDSISLSIAAASIIAKV 155 D +K D+ +AAASI+AKV Sbjct: 127 GVADWLTAPQPDLLTALEGAPPFRFAPEPVAVPSTPPVLMEVKADARCAVVAAASILAKV 186 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RD LM P YG+ S+ GY + H + + G S HR ++ Sbjct: 187 ERDALMVDLDD--PGYGWASNKGYASPAHIKGLSALGASDQHRRSW 230 >gi|46200090|ref|YP_005757.1| ribonuclease HII [Thermus thermophilus HB27] gi|73917834|sp|Q72GR0|RNH2_THET2 RecName: Full=Ribonuclease HII; Short=RNase HII gi|46197718|gb|AAS82130.1| ribonuclease HII [Thermus thermophilus HB27] Length = 203 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 70/192 (36%), Positives = 101/192 (52%), Gaps = 6/192 (3%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE 73 LEA K + VAG+DE GRGA A + ++ + DSK +S + RE L E Sbjct: 6 LEAPFWRKGL-LVAGLDEAGRGAWA--GPIVVGVVVLPPGEYPFRDSKLLSPRARERLAE 62 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 K+ A ++ A +D+ + KATL A A+ +L + P + + D +P P Sbjct: 63 KVKEVALAFALGVAEAAEVDRLGVLKATLLAAERALLSLPLAPEALVTD--YLPLPTPLP 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 + K D S ++AAASI+AKV RDR+M + YP YGF H GY T +HQ+ + G Sbjct: 121 LLSPPKADEKSPTVAAASILAKVHRDRIMAELDRLYPGYGFARHKGYGTPEHQEALLALG 180 Query: 193 PSCIHRLTFRPL 204 PS +HR F P+ Sbjct: 181 PSPVHRKRFAPV 192 >gi|323359714|ref|YP_004226110.1| ribonuclease HII [Microbacterium testaceum StLB037] gi|323276085|dbj|BAJ76230.1| ribonuclease HII [Microbacterium testaceum StLB037] Length = 217 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 15/207 (7%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISH 65 P LE + +++ +A DEVGRGALAGPV V A ++DP +P G+ DSK + Sbjct: 4 PTLTLERRLLKEHALVIA-CDEVGRGALAGPVAVGAAVIDPSRSRKRVPTGLRDSKLVPE 62 Query: 66 KKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 +R E+ + + S + AS + ID+ I +A A A+ +L+ Sbjct: 63 ARRPEVAARAAAFVQHSAVGWASSEEIDEIGIIRALGLAAVRAIADLRAHGVVPEDALVI 122 Query: 125 IPEDLPC---------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 + + + ++K D S AAAS+IAKV RD +M H P YG+ Sbjct: 123 LDGNHDYITPAGESGLRVQPIVKADRDCASAAAASVIAKVARDTVMTYLHDDLPAYGWAR 182 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + GY + H++ I G S HR ++ Sbjct: 183 NKGYASLDHREAISAHGMSVHHRHSWA 209 >gi|225677449|ref|ZP_03788413.1| ribonuclease HII [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590507|gb|EEH11770.1| ribonuclease HII [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 149 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 1/148 (0%) Query: 59 DSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 DSKK++ + R+ LYEKI S A I AS + I+ +NI +AT ++ A+ +L + Sbjct: 1 DSKKLTPQCRQVLYEKIISVAKFGIGMASVEEINSYNILQATKLSMKRALIDLDLELDYV 60 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 L+DG P ++ Q +++ GD++S SIAAASI+AKVTRDRLM+ H K+P+Y + + G Sbjct: 61 LVDGN-QPPEVKWQVKSIVNGDNLSTSIAAASIVAKVTRDRLMQELHNKHPEYNWYKNKG 119 Query: 179 YPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 Y T +H I G + HR F P+ Sbjct: 120 YGTKEHLNAIGLYGITEHHRKNFAPISR 147 >gi|227875952|ref|ZP_03994075.1| possible ribonuclease H [Mobiluncus mulieris ATCC 35243] gi|227843484|gb|EEJ53670.1| possible ribonuclease H [Mobiluncus mulieris ATCC 35243] Length = 271 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 96/259 (37%), Gaps = 68/259 (26%) Query: 10 PHFELEAMVR-------------------EKNMWPVAGIDEVGRGALAGPVVVAAIILDP 50 P E+ + V G+DEVGRGALAGPV + ++ Sbjct: 13 PDLSWESAALGGVNGCAVSGDYFAASGGTAAPVTLVGGMDEVGRGALAGPVCIGVTVVSA 72 Query: 51 NN----IPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIY 105 P G+NDSK ++ ++RE L + I S +I A++ ID+ I A A + Sbjct: 73 TELAAGFPPGLNDSKALTARRREALVQPIQSWVKDFAIGEATNMEIDEMGIMAAMRLAGW 132 Query: 106 HAVEN--------------LQVIPRSALIDGRSIPEDLPC-------------------- 131 A+ V A Sbjct: 133 RALNQLDARGHLPQKLLLDGNVDYLQAEHQANLFDAQWHLMNPAQPAQPAQPAMGTTPAH 192 Query: 132 --------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + ++K D + ++A A+++AKV RD M + P YG+ +VGY T Sbjct: 193 NPPPAPLLKVQTLVKADQHAATVAGAAVLAKVYRDAFMSRL--EDPGYGWSHNVGYGTKA 250 Query: 184 HQQVIKEKGPSCIHRLTFR 202 H++ I GPS HR T++ Sbjct: 251 HREAISRLGPSRWHRHTWK 269 >gi|296129323|ref|YP_003636573.1| Ribonuclease H [Cellulomonas flavigena DSM 20109] gi|296021138|gb|ADG74374.1| Ribonuclease H [Cellulomonas flavigena DSM 20109] Length = 279 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 46/229 (20%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI------------PFGI 57 PH E + + VAG+DEVGRG+LA P ++ P G+ Sbjct: 30 PHLRHERALLRTGLRYVAGMDEVGRGSLA----------GPVSVGVVVVDVGTRSAPRGV 79 Query: 58 NDSKKISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR 116 DSK ++ R L + + + AS ID I A A A+ ++ + Sbjct: 80 ADSKLLTPAARAALLPSLGRWGVARAVGHASPTEIDDRGIVAALRLAGTRALRSVLEVVE 139 Query: 117 SALIDGRSIPEDLPCQ-----------------------AFAVIKGDSISLSIAAASIIA 153 D +K D ++AAAS++A Sbjct: 140 QVDAVVLDGSHDWLTPPEPDLFGTQSELFAPSPDLRVPAVHLRVKADRSCATVAAASVLA 199 Query: 154 KVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 K RD LM +P+Y +D + GY + +H ++E GP+ +HR ++R Sbjct: 200 KCERDALMVQHAAAHPEYRWDENKGYASPEHVAALRELGPTPLHRRSWR 248 >gi|315604543|ref|ZP_07879606.1| ribonuclease HII [Actinomyces sp. oral taxon 180 str. F0310] gi|315313555|gb|EFU61609.1| ribonuclease HII [Actinomyces sp. oral taxon 180 str. F0310] Length = 231 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 73/214 (34%), Positives = 102/214 (47%), Gaps = 25/214 (11%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKR 68 ELE + ++ VAG+DEVGRGALAGPV V ++ + P G+ DSK +S ++R Sbjct: 5 SRELEYSLAQR-WGVVAGMDEVGRGALAGPVAVGVALVGADAPAVPGGLTDSKALSPRRR 63 Query: 69 EELYEKITSSAII-SISSASHQYIDKHNIHKATLDAIYHAVENL---------------- 111 E L E I S + ++ AS ID+ I A A A+ + Sbjct: 64 EALVEPIHSWVLASCVAYASAAEIDRWGIVCALRLAGRRALAGVVAKGHAPGGVLLDGSH 123 Query: 112 ---QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + DG P+ +K D+ +AAAS++AKV RDRLMR + Sbjct: 124 DWLSIPDDLCAADGPDYPDCGALPVHTQVKADASCAVVAAASVLAKVARDRLMRE--AED 181 Query: 169 PDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 P YG+ S+ GY +A H Q I G S HR T+R Sbjct: 182 PGYGWASNKGYGSAAHAQAIARLGVSDFHRRTWR 215 >gi|309790097|ref|ZP_07684670.1| ribonuclease H [Oscillochloris trichoides DG6] gi|308227822|gb|EFO81477.1| ribonuclease H [Oscillochloris trichoides DG6] Length = 207 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 67/211 (31%), Positives = 90/211 (42%), Gaps = 27/211 (12%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAG----------------PVVVAAIILDPNNI 53 P E + AGIDE GRG AG P ++ Sbjct: 3 PTITHEQAWHARGYSNCAGIDEAGRGCWAGPVVAAAVVLAPSVFQQP-----------DL 51 Query: 54 PFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113 G+NDSK++ R L+ +I A+ Y+ + Sbjct: 52 LAGVNDSKQLDAATRGRLFGQIHHYALGVGVGIVPAYLIDAYGIVPATRLAMLSALLSLP 111 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 AL+ DL A+IKGD+ SLSIAAAS++AKVTRD LM+ A +P YGF Sbjct: 112 CRVDALLIDALTLPDLSLPQEALIKGDARSLSIAAASVVAKVTRDHLMQTADHVFPGYGF 171 Query: 174 DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 +H GY TA HQ+ + G +HR TF+PL Sbjct: 172 AAHKGYGTAAHQRALAIHGSCALHRRTFQPL 202 >gi|304389808|ref|ZP_07371767.1| ribonuclease HII [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326984|gb|EFL94223.1| ribonuclease HII [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 235 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 96/233 (41%), Gaps = 43/233 (18%) Query: 11 HFELEAMVREKNMW-----------PVAGIDEVGRGALAGPVVVAAIILD---------P 50 E + + G+DEVGRGALAGPV V +LD P Sbjct: 3 DLSWETAALAELAQCGSDGHEGRLPLIGGMDEVGRGALAGPVCVGVAVLDQRSLDNPDFP 62 Query: 51 NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE 109 P G+NDSK+++ ++R L + I + +I AS+ ID+ I A A + A+ Sbjct: 63 QGFPVGLNDSKQLTARRRVALQDPIQAWVRDFAIGQASNTEIDELGIMPALRLAGWRALN 122 Query: 110 NLQVIPRSALIDGRSIPEDL--------------------PCQAFAVIKGDSISLSIAAA 149 L D ++KGD + IAAA Sbjct: 123 ELDARGHLPQRLLLDGNFDYLASPRQPDLFAEAGNLVSSPEVSVETLVKGDGKAAVIAAA 182 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +++AKV RD MR H P YG+ +VGY T H+ + E G S HR T++ Sbjct: 183 AVLAKVYRDAFMRSLHD--PGYGWARNVGYGTPAHKAGLAELGASVWHRKTWK 233 >gi|298346453|ref|YP_003719140.1| putative ribonuclease H [Mobiluncus curtisii ATCC 43063] gi|298236514|gb|ADI67646.1| possible ribonuclease H [Mobiluncus curtisii ATCC 43063] Length = 235 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 96/233 (41%), Gaps = 43/233 (18%) Query: 11 HFELEAMVREKNMW-----------PVAGIDEVGRGALAGPVVVAAIILD---------P 50 E + + G+DEVGRGALAGPV V +LD P Sbjct: 3 DLSWETAALAELAQCGSYGHEGRLPLIGGMDEVGRGALAGPVCVGVAVLDQRSLDNPDFP 62 Query: 51 NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE 109 P G+NDSK+++ ++R L + I + +I AS+ ID+ I A A + A+ Sbjct: 63 QGFPVGLNDSKQLTARRRVALQDPIQAWVRDFAIGQASNTEIDELGIMPALRLAGWRALN 122 Query: 110 NLQVIPRSALIDGRSIPEDL--------------------PCQAFAVIKGDSISLSIAAA 149 L D ++KGD + IAAA Sbjct: 123 ELDARGHLPQRLLLDGNFDYLASPRQPDLFAEAGNLVSSPEVSVETLVKGDGKAAVIAAA 182 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +++AKV RD MR H P YG+ +VGY T H+ + E G S HR T++ Sbjct: 183 AVLAKVYRDAFMRSLHD--PGYGWARNVGYGTPAHKAGLAELGASVWHRKTWK 233 >gi|315657113|ref|ZP_07909997.1| ribonuclease HII [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492216|gb|EFU81823.1| ribonuclease HII [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 235 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 96/233 (41%), Gaps = 43/233 (18%) Query: 11 HFELEAMVREKNMW-----------PVAGIDEVGRGALAGPVVVAAIILD---------P 50 E + + G+DEVGRGALAGPV V +LD P Sbjct: 3 DLSWETAALAELAQCGSYGHEGRLPLIGGMDEVGRGALAGPVCVGVAVLDQRSLENPDFP 62 Query: 51 NNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE 109 P G+NDSK+++ ++R L + I + +I AS+ ID+ I A A + A+ Sbjct: 63 QGFPVGLNDSKQLTARRRVALQDPIQAWVRDFAIGQASNTEIDELGIMSALRLAGWRALN 122 Query: 110 NLQVIPRSALIDGRSIPEDL--------------------PCQAFAVIKGDSISLSIAAA 149 L D ++KGD + IAAA Sbjct: 123 ELDARGHLPQRLLLDGNFDYLASPRQPDLFAGAGNLVSSPEVSVETLVKGDGKAAVIAAA 182 Query: 150 SIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +++AKV RD MR H P YG+ +VGY T H+ + E G S HR T++ Sbjct: 183 AVLAKVYRDAFMRSLHD--PGYGWARNVGYGTPAHKAGLAELGASVWHRKTWK 233 >gi|306819232|ref|ZP_07452943.1| ribonuclease HII [Mobiluncus mulieris ATCC 35239] gi|304648014|gb|EFM45328.1| ribonuclease HII [Mobiluncus mulieris ATCC 35239] Length = 274 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 96/262 (36%), Gaps = 71/262 (27%) Query: 10 PHFELEAMVR-------------------EKNMWPVAGIDEVGRGALAGPVVVAAIILDP 50 P E+ + V G+DEVGRGALAGPV + ++ Sbjct: 13 PDLSWESAALGGVNGCAVSGDYFAASGGTAAPVTLVGGMDEVGRGALAGPVCIGVTVVSA 72 Query: 51 NN----IPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIY 105 P G+NDSK ++ ++RE L + I S +I A++ ID+ I A A + Sbjct: 73 TELAAGFPPGLNDSKALTARRREALVQPIQSWVKDFAIGEATNMEIDEMGIMAAMRLAGW 132 Query: 106 HAVEN--------------LQVIPRSALIDGRSIPEDLPC-------------------- 131 A+ V A Sbjct: 133 RALNQLDARGHLPQKLLLDGNVDYLQAEHQANLFDAQWHLMNPAQPAQPAQPAQPAMGTT 192 Query: 132 -----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + ++K D + ++A A+++AKV RD M + P YG+ +VGY Sbjct: 193 PAHNPPPAPLLKVQTLVKADQHAATVAGAAVLAKVYRDAFMSRL--EDPGYGWSHNVGYG 250 Query: 181 TAKHQQVIKEKGPSCIHRLTFR 202 T H++ I GPS HR T++ Sbjct: 251 TKAHREAISRLGPSRWHRHTWK 272 >gi|205355751|ref|ZP_03222521.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8421] gi|205346528|gb|EDZ33161.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni CG8421] Length = 159 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 5/162 (3%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKAT 100 +++AA L+ G+ DSKK+S KKREELYE I ++ I + S + ID + Sbjct: 1 MMMAACKLNK--QLDGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCL 58 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + ++ + ++ + IK D+ L ++AASI+AKV++DR+ Sbjct: 59 KKGLKLIKKHFKTENNFLYDGNTNLGING---IKTQIKADTSILQVSAASILAKVSKDRV 115 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 M K +P Y F+ + Y T H++ I + G +HR +F+ Sbjct: 116 MNFLAKDFPCYEFEKNKAYGTKAHKEFIAKFGICKLHRKSFK 157 >gi|254173516|ref|ZP_04880188.1| ribonuclease HII [Thermococcus sp. AM4] gi|214032208|gb|EEB73038.1| ribonuclease HII [Thermococcus sp. AM4] Length = 230 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 28/208 (13%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS- 78 +AGIDE GRG + GP+V+AA+++D + G+ DSKK++ ++RE L+++I + Sbjct: 5 RKLAGIDEAGRGPVIGPMVIAAVVVDEDKLGNLEELGVKDSKKLTPRRRERLFDEIIAQL 64 Query: 79 AIISISSASHQYIDKHNIHKATL--DAIYHAVENLQVIPRSALIDGRSIPEDLPCQA--- 133 I + ID + + A+ +L+V P ID + E +A Sbjct: 65 DDYVIIELWPEEIDSRKVTLNEFEVENFAKALNSLKVRPDVVYIDAADVKEGRFGEAVGR 124 Query: 134 --------FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184 A + D + ++AASI+AKV RDR + ++Y + G GYP+ + Sbjct: 125 LLSFKAEIVAEHRADDKFVPVSAASILAKVVRDRAIERLKREYGEIG----SGYPSDPRT 180 Query: 185 QQVI----KEKG-PSCIHRLTFRPLRNL 207 ++ + +E G I R T++ ++ + Sbjct: 181 REFLEKYYREHGDFPPIVRKTWKTVKKI 208 >gi|297571158|ref|YP_003696932.1| ribonuclease H [Arcanobacterium haemolyticum DSM 20595] gi|296931505|gb|ADH92313.1| Ribonuclease H [Arcanobacterium haemolyticum DSM 20595] Length = 224 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 18/211 (8%) Query: 10 PHFELEAMVREK--NMWPVAGIDEVGRGALAGPVVVAAIILDPN---NIPFGINDSKKIS 64 P +E + + +AG+DEVGRG++AGP V +++ + P G+ DSK IS Sbjct: 6 PDRTVERELLAQLPAGTYLAGVDEVGRGSIAGPASVGIALVNTDTVDEFPVGLRDSKMIS 65 Query: 65 HKKREELYEKITSS-AIISISSASHQYIDKHNI------------HKATLDAIYHAVENL 111 RE L E + + ++ AS Q +++ I + I + + Sbjct: 66 AHVRESLVEPVHEWVSAYAVGHASPQDVNEAGILGALRIAAARALEQLDGFEIAGVLLDG 125 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 S+ + +KGD+ +AAAS++AKV RDR+M + + +P Y Sbjct: 126 SHDWWSSDGLFDAGATLPVLPVRMEVKGDARCAVVAAASVLAKVERDRIMVESAEAFPGY 185 Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 GF+ + GY +A+H ++ G S HR ++ Sbjct: 186 GFERNKGYASAEHIHGLETLGASAFHRTAWK 216 >gi|307700238|ref|ZP_07637279.1| ribonuclease HII [Mobiluncus mulieris FB024-16] gi|307614620|gb|EFN93848.1| ribonuclease HII [Mobiluncus mulieris FB024-16] Length = 257 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 95/256 (37%), Gaps = 65/256 (25%) Query: 10 PHFELEAMVR-------------------EKNMWPVAGIDEVGRGALAGPVVVAAIILDP 50 P E+ + V G+DEVGRGALAGPV + ++ Sbjct: 2 PDLSWESAALGGVNGCAVSGDYFAASGGTAAPVALVGGMDEVGRGALAGPVCIGVTVVSA 61 Query: 51 NN----IPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIY 105 P G+NDSK ++ ++RE L + I S +I A++ ID+ I A A + Sbjct: 62 TELAAGFPPGLNDSKALTARRREALVQPIQSWVKDFAIGEATNMEIDEMGIMAAMRLAGW 121 Query: 106 HAVEN--------------LQVIPRSALIDGRSIPEDLPC-------------------- 131 A+ V A Sbjct: 122 RALNQLDARGHLPQKLLLDGNVDYLQAEHQANLFDAQWHLMNPAQPAQPAMGTTPAHNPP 181 Query: 132 -----QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 + ++K D + ++A A+++AKV RD M + P YG+ +VGY T H++ Sbjct: 182 PAPLLKVQTLVKADQHAATVAGAAVLAKVYRDAFMSRL--EDPGYGWSHNVGYGTKAHRE 239 Query: 187 VIKEKGPSCIHRLTFR 202 I G S HR T++ Sbjct: 240 AISRLGSSRWHRHTWK 255 >gi|253315602|ref|ZP_04838815.1| ribonuclease HII [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 232 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 71/164 (43%), Positives = 98/164 (59%), Gaps = 4/164 (2%) Query: 14 LEAM-VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E ++E + GIDEVGRG LAGPVV A IL+ N+ G++DSKK+ KR EL Sbjct: 61 FENEILKEHPNAIICGIDEVGRGPLAGPVVACATILNSNHNYLGLDDSKKVPITKRLELN 120 Query: 73 EKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 E + + + A+ + ID+ NI+KAT A+ A++ L V P LID ++ D Sbjct: 121 EALKNEVTAFAYGIATAEEIDEFNIYKATQIAMQRAIDGLSVQPTHLLID--AMTLDNAL 178 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 ++IKGD+ S+SIAAASI+AKV RD M K YP+YGF+ Sbjct: 179 PQVSLIKGDARSVSIAAASIMAKVFRDDYMTQLSKDYPEYGFEK 222 >gi|77386118|gb|ABA77535.1| ribonuclease HII [Campylobacter jejuni] Length = 159 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 5/162 (3%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKAT 100 +++AA L+ G+ DSKK+S KKREELYE I ++ I + S + ID + Sbjct: 1 MMMAACKLNKK--LDGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCL 58 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + ++ + ++ + IK D+ L ++AASI+AKV++DR+ Sbjct: 59 KTGLKLIKKHFKTENNFLYDGNTNLGING---IKTQIKADASILQVSAASILAKVSKDRV 115 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 M K +P Y F+ + Y T H+++I + G +HR +F+ Sbjct: 116 MNFLAKDFPCYEFEKNKAYGTKAHKELIAKFGICKLHRKSFK 157 >gi|240103148|ref|YP_002959457.1| ribonuclease HII [Thermococcus gammatolerans EJ3] gi|239910702|gb|ACS33593.1| Ribonuclease HII (rnhB) [Thermococcus gammatolerans EJ3] Length = 226 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 28/208 (13%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS- 78 +AGIDE GRG + GP+V+AA+++D + G+ DSKK++ +RE L+++I + Sbjct: 3 RKIAGIDEAGRGPVIGPMVIAAVVVDEEKLKSLEELGVRDSKKLTPGRRERLFDEIIAQL 62 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHA-------------VENLQVIPRSALIDGRSI 125 I + ID + + + + + + Sbjct: 63 DDYVIIELWPEEIDSREVTLNEFEVENFSKALNSLKVKPDVVYIDAADVKEGRFGEAIGK 122 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184 + A + D + ++AASI+AKV RDR + ++Y + G GYP+ + Sbjct: 123 LLKFKAEIVAEHRADDKFVPVSAASILAKVVRDRAIEKLKEEYGEIG----SGYPSDPRT 178 Query: 185 QQVI----KEKG-PSCIHRLTFRPLRNL 207 + + +E G I R T++ + + Sbjct: 179 RDFLERYYREHGDFPPIVRRTWKTVEKI 206 >gi|207108743|ref|ZP_03242905.1| ribonuclease HII [Helicobacter pylori HPKX_438_CA4C1] Length = 189 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 9/178 (5%) Query: 37 LAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSS--AIISISSASHQY 90 +AG + VA + D + G+ DSKK+S KKR L +KI + + S + Sbjct: 1 MAGSLFVAGVACDEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVKFFVVKKSAEA 60 Query: 91 IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIKGDSISLSIAA 148 ID + AI +EN + IDG + +IKGD IA Sbjct: 61 IDSLGLGACLRLAIEEILENGCSLANEIKIDGNTAFGLNKRYPHIQTIIKGDETIAQIAM 120 Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AS++AK +DR MR H + +YG+D + GY T +H + I + G + HR +F L+N Sbjct: 121 ASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAIIKLGATPFHRHSF-TLKN 177 >gi|325067038|ref|ZP_08125711.1| putative ribonuclease H [Actinomyces oris K20] Length = 244 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 96/226 (42%), Gaps = 36/226 (15%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISH 65 RP LE + E V G+DEVGRGALAGPV V I+ ++ P G+ DSK+++ Sbjct: 8 RPDRSLEKALLET-YDYVGGLDEVGRGALAGPVSVGLAIVARRTDDDFPEGLADSKQLTA 66 Query: 66 KKREELYEKITSS-AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + R L E + +++ AS ID+H I A A A++ + + I Sbjct: 67 RARTGLVEPVRGWLVDHAVAHASPAEIDEHGIVAALRMAGLRALQQVADRGHAPRIIILD 126 Query: 125 IPEDL-----------------------------PCQAFAVIKGDSISLSIAAASIIAKV 155 D +K D+ +AAAS++AKV Sbjct: 127 GVADWLTAAQPDLLTALEGAHVSETAPAPAEVLSTPPVHMEVKADARCAVVAAASVLAKV 186 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RDRLM P YG+ S+ GY + H + + G S HR ++ Sbjct: 187 ERDRLMADLDD--PGYGWASNKGYASPAHVRGLTVLGASDQHRRSW 230 >gi|315655024|ref|ZP_07907928.1| ribonuclease HII [Mobiluncus curtisii ATCC 51333] gi|315490680|gb|EFU80301.1| ribonuclease HII [Mobiluncus curtisii ATCC 51333] Length = 236 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 65/208 (31%), Positives = 94/208 (45%), Gaps = 32/208 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD---------PNNIPFGINDSKKISHKKREELYEKI 75 + G+DEVGRGALAGPV V ++D P P G+NDSK+++ ++R L + I Sbjct: 29 LIGGMDEVGRGALAGPVCVGVAVVDQRSLENPDFPQGFPVGLNDSKQLTARRRVALQDPI 88 Query: 76 TSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL----- 129 + +I AS+ ID+ I A A + A+ L D Sbjct: 89 QAWVRDFAIGQASNTEIDELGIMPALRLAGWRALNELDARGHLPQRLLLDGNFDYLASPR 148 Query: 130 ---------------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 ++KGD + IAAA+++AKV RD MR H P YG+ Sbjct: 149 QPDLFAGAGNLVSSPEVSVETLVKGDGKAAVIAAAAVLAKVYRDAFMRSLHD--PGYGWT 206 Query: 175 SHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +VGY T H+ + E G S HR T++ Sbjct: 207 RNVGYGTPAHKAGLAELGASVWHRKTWK 234 >gi|326771770|ref|ZP_08231055.1| ribonuclease HII [Actinomyces viscosus C505] gi|326637903|gb|EGE38804.1| ribonuclease HII [Actinomyces viscosus C505] Length = 240 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 96/225 (42%), Gaps = 36/225 (16%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIPFGINDSKKISHK 66 P LE + E V G+DEVGRGALAGPV V I+ ++ P G+ DSK+++ + Sbjct: 9 PDRSLEKALLET-YDYVGGLDEVGRGALAGPVSVGLAIVARRTDDDFPEGLADSKQLTAR 67 Query: 67 KREELYEKITSS-AIISISSASHQYIDKHNIHKATL---DAIYHAVENLQVIPRSALIDG 122 R L E + +++ AS ID+H I A V + P ++DG Sbjct: 68 ARTVLIEPVRGWLVDHAVAHASPAEIDEHGIIGALRVAGLRALQQVADRGHAPGVIILDG 127 Query: 123 RSIPEDLPC--------------------------QAFAVIKGDSISLSIAAASIIAKVT 156 + P +K D+ +AAAS++AKV Sbjct: 128 VADWLTAPQPDLLTTLESTHAPKDSPEPAEVPSTPPVRMEVKADARCAVVAAASVLAKVE 187 Query: 157 RDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RDRLM P YG+ S+ GY + H + + G S HR ++ Sbjct: 188 RDRLMADLDD--PGYGWASNKGYASPAHIRGLTSLGASDQHRRSW 230 >gi|254467826|ref|ZP_05081232.1| ribonuclease HII [beta proteobacterium KB13] gi|207086636|gb|EDZ63919.1| ribonuclease HII [beta proteobacterium KB13] Length = 179 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 82/178 (46%), Positives = 108/178 (60%), Gaps = 4/178 (2%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISS 85 GIDEVGRG +AGPVV AA+++D + ++DSK +S K+RE L ++I SIS Sbjct: 3 IGIDEVGRGCVAGPVVAAAVVIDESFDVL-VSDSKLLSAKRRESLDKEIKKKCVDFSISV 61 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLS 145 + + +D+ NIHKA+L A+ A NL S DG+ P+ A A + GD + Sbjct: 62 INSKIVDEINIHKASLLAMEQAYINLCHQSGSIKCDGKFTPKIDG--AVAHVNGDKLYTE 119 Query: 146 IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRP 203 I+AASIIAKV RD LM KYPDY FD H GY T H + I++ GP IHRLTF+P Sbjct: 120 ISAASIIAKVYRDHLMNYISLKYPDYHFDKHKGYLTKLHLEAIEQYGPCNIHRLTFKP 177 >gi|255020983|ref|ZP_05293038.1| Ribonuclease HII [Acidithiobacillus caldus ATCC 51756] gi|254969588|gb|EET27095.1| Ribonuclease HII [Acidithiobacillus caldus ATCC 51756] Length = 168 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 63/165 (38%), Positives = 89/165 (53%), Gaps = 5/165 (3%) Query: 41 VVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKA 99 + VAA+IL G+ DSKK+S +R L +KI + A +I+SA I+++N+ +A Sbjct: 1 MTVAAVIL--ARPLPGLADSKKLSPLRRAVLSQKIRAEAWAWAIASAGSWEIERYNVLQA 58 Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 TL A+ A+ L P +DG QA +++GDS +IAAASI+AK RD Sbjct: 59 TLRAMDRALRALPPGPWRVAVDGNRA--LPHWQAETLVRGDSRLDAIAAASILAKTARDA 116 Query: 160 LMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 M + P Y F H GYPT H ++ GPS IHR F P+ Sbjct: 117 EMDALDRHLPGYAFGQHRGYPTPLHLAALQRLGPSLIHRRGFAPV 161 >gi|134045249|ref|YP_001096735.1| ribonuclease HII [Methanococcus maripaludis C5] gi|189043624|sp|A4FWE5|RNH2_METM5 RecName: Full=Ribonuclease HII; Short=RNase HII gi|132662874|gb|ABO34520.1| RNase HII [Methanococcus maripaludis C5] Length = 239 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 32/217 (14%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 E N + G+DE GRG + GP+V+A++ ++ ++P G+ DSK++S KKREELY KI Sbjct: 14 ESNGKIIVGLDEAGRGPVIGPMVIASVKINEKDLPRLDDLGLRDSKQLSKKKREELYTKI 73 Query: 76 TSSAIISISSASHQYIDKHN------------------IHKATLDAIYHAVENLQVIPRS 117 + + + + ID+ + I ++ +S Sbjct: 74 SEICDVKKVVINPEKIDEQMEIINLNKIELGAFSKLANHFIKENENISIYIDACSSNEQS 133 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 ++ + + A K D ++AASIIAKVTRD ++ K + + G Sbjct: 134 FSNQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKKTFGEIG----S 189 Query: 178 GYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP+ K ++ +K G I R ++ +NL Sbjct: 190 GYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLL 226 >gi|150402543|ref|YP_001329837.1| ribonuclease HII [Methanococcus maripaludis C7] gi|189043625|sp|A6VGW0|RNH2_METM7 RecName: Full=Ribonuclease HII; Short=RNase HII gi|150033573|gb|ABR65686.1| ribonuclease HII [Methanococcus maripaludis C7] Length = 239 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 32/215 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 N + G+DE GRG + GP+V+A++ ++ N++P G+ DSK+++ KKREELY KI+ Sbjct: 16 NGKIIVGLDEAGRGPVIGPMVIASVKINENDLPKLHDLGLKDSKQLTKKKREELYIKISE 75 Query: 78 SAIISISSASHQYIDKHN------------------IHKATLDAIYHAVENLQVIPRSAL 119 + + ID+ + I ++ +S Sbjct: 76 ICDVKKIVIDPEKIDEQMEIINLNKIELGAFSKLANHFIKENENISIYIDACSSNEQSFS 135 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 ++ + + A K D ++AASIIAKVTRD ++ + + + G GY Sbjct: 136 NQFKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKEIFGEIG----SGY 191 Query: 180 PT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 P+ K ++ +K G I R ++ +NL Sbjct: 192 PSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLL 226 >gi|32265505|ref|NP_859537.1| ribonuclease HII [Helicobacter hepaticus ATCC 51449] gi|32261553|gb|AAP76603.1| ribonuclease HII [Helicobacter hepaticus ATCC 51449] Length = 207 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 25/203 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAI--- 80 VAGIDE GRG + G + +A II + FG DSKK+ K+R +Y + S Sbjct: 2 WVAGIDEAGRGCICGGLFIAGIIANEQVIAQFGAKDSKKMLPKQRVRVYNALLDSQKRGE 61 Query: 81 --ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC------- 131 ++ IDK+ + A I + L I ++ P D+ Sbjct: 62 IGFYVAQIQAWDIDKYGLSWAMRSGIEEVLSYLGSYMLEQNILVQNQPLDIVIDGNTTFG 121 Query: 132 ------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +IKGD + I+ AS++AKV++D M + YP Y + GY Sbjct: 122 AHIPTFLAHKDVHLKTLIKGDELMPIISCASVVAKVSKDSQMYMLDNLYPQYLLAKNKGY 181 Query: 180 PTAKHQQVIKEKGPSCIHRLTFR 202 T +H++ I G HR +F+ Sbjct: 182 ATLEHKKQIMRYGYCPHHRKSFK 204 >gi|2352484|gb|AAC46185.1| RNAseH II [Lactococcus lactis subsp. cremoris MG1363] Length = 166 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 45 AIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDA 103 A+IL N G+NDSKK+ K + +I A I + + ID+ NI++AT A Sbjct: 1 AVILPKNCKIRGLNDSKKVPKSKHHAILSEIQEKALAIGVGIVDAEKIDEVNIYEATKIA 60 Query: 104 IYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + AV L + P LID ++ DLP +I GD+ S SIAAASI+AKVTRD +M+ Sbjct: 61 MIQAVSKLSLKPEHLLID--AMVLDLPIAQTKIIHGDARSASIAAASIVAKVTRDEMMKD 118 Query: 164 AHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 ++P+Y F+ + GY TAKH + + G + IHR ++ P++++ Sbjct: 119 FALEFPEYDFEHNAGYGTAKHLAALTKYGITRIHRKSYEPIKSM 162 >gi|270700822|ref|ZP_06223058.1| ribonuclease HII [Haemophilus influenzae HK1212] gi|270315846|gb|EFA27947.1| ribonuclease HII [Haemophilus influenzae HK1212] Length = 137 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 78/126 (61%) Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ A ID+ NI +A+L A+ AV++L++ P L+DG IP+DL A AV+KGD Sbjct: 7 WALGRAEANEIDEINILQASLLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGD 66 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 SI I+AASI+AKV RD+ M K+YP+Y F H GYPT H + + E G HR + Sbjct: 67 SIVAEISAASILAKVARDQEMEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQHRRS 126 Query: 201 FRPLRN 206 F P++ Sbjct: 127 FAPVKK 132 >gi|134104117|pdb|2DFF|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-204)-C Length = 213 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 28/207 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 82 SISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE----- 127 + + + A ++ + + + R E Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 + + A K D I ++AASI+AKVTRDR + ++Y + G GYP+ + + Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178 Query: 187 VI----KEKG-PSCIHRLTFRPLRNLS 208 + +E G I R ++ L+ ++ Sbjct: 179 FLENYYREHGEFPPIVRKGWKTLKKIT 205 >gi|134104118|pdb|2DFH|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-212)-C Length = 221 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 28/207 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 82 SISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE----- 127 + + + A ++ + + + R E Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 + + A K D I ++AASI+AKVTRDR + ++Y + G GYP+ + + Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178 Query: 187 VI----KEKG-PSCIHRLTFRPLRNLS 208 + +E G I R ++ L+ ++ Sbjct: 179 FLENYYREHGEFPPIVRKGWKTLKKIA 205 >gi|14278500|pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From Hyperthermophilic Archaeon, Thermococcus Kodakaraensis Kod1 Length = 213 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 28/207 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 82 SISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE----- 127 + + + A ++ + + + R E Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 + + A K D I ++AASI+AKVTRDR + ++Y + G GYP+ + + Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178 Query: 187 VI----KEKG-PSCIHRLTFRPLRNLS 208 + +E G I R ++ L+ ++ Sbjct: 179 FLENYYREHGEFPPIVRKGWKTLKKIA 205 >gi|57640740|ref|YP_183218.1| ribonuclease HII [Thermococcus kodakarensis KOD1] gi|7227922|sp|O74035|RNH2_PYRKO RecName: Full=Ribonuclease HII; Short=RNase HII gi|3551209|dbj|BAA32803.1| ribonuclease HII [Thermococcus kodakaraensis] gi|57159064|dbj|BAD84994.1| ribonuclease HII [Thermococcus kodakarensis KOD1] Length = 228 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 28/207 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 82 SISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE----- 127 + + + A ++ + + + R E Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 + + A K D I ++AASI+AKVTRDR + ++Y + G GYP+ + + Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178 Query: 187 VI----KEKG-PSCIHRLTFRPLRNLS 208 + +E G I R ++ L+ ++ Sbjct: 179 FLENYYREHGEFPPIVRKGWKTLKKIA 205 >gi|159905682|ref|YP_001549344.1| ribonuclease HII [Methanococcus maripaludis C6] gi|238686969|sp|A9A9T9|RNH2_METM6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|159887175|gb|ABX02112.1| ribonuclease HII [Methanococcus maripaludis C6] Length = 239 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 32/213 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 + G+DE GRG + GP+V+A++ ++ + G+ DSK++S KKREELY KI+ Sbjct: 18 KIIVGLDEAGRGPVIGPMVIASVKINEKDLYKLQDLGLKDSKQLSKKKREELYVKISEIC 77 Query: 80 IISISSASHQYIDKHN------------------IHKATLDAIYHAVENLQVIPRSALID 121 + + + ID+ + I ++ +S Sbjct: 78 NVKKIVIAPEKIDEQMEITNLNKIELSAFSKLANHFIKENENISIYIDACSSNEQSFSNQ 137 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 ++ + + A K D ++AASIIAKVTRD ++ K + + G GYP+ Sbjct: 138 FKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKKTFGEIG----SGYPS 193 Query: 182 -AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 K ++ +K+ G I R ++ +NL Sbjct: 194 DPKTKKFLKKYVHENKGLPKIARKSWATSKNLL 226 >gi|229140479|ref|ZP_04269034.1| Ribonuclease [Bacillus cereus BDRD-ST26] gi|228643040|gb|EEK99316.1| Ribonuclease [Bacillus cereus BDRD-ST26] Length = 147 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 65/146 (44%), Positives = 94/146 (64%), Gaps = 3/146 (2%) Query: 63 ISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S KRE Y++I + AI I + S Q ID+ NI++AT A+ AV NL P+ LID Sbjct: 1 MSEAKRERFYDEIKAQAIAIGVGIVSPQVIDEINIYQATKQAMLDAVANLSCTPQYLLID 60 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +P P ++IKGD+ S+SI+AASIIAKVTRDR+M+ +KYP YGF+ H+GY T Sbjct: 61 AMKLPT--PIPQTSIIKGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGT 118 Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRNL 207 +H + I+ G HR +F P++++ Sbjct: 119 KQHLEAIEAHGILEEHRKSFAPIKDM 144 >gi|212223919|ref|YP_002307155.1| ribonuclease HII [Thermococcus onnurineus NA1] gi|226736826|sp|B6YVT5|RNH2_THEON RecName: Full=Ribonuclease HII; Short=RNase HII gi|212008876|gb|ACJ16258.1| ribonuclease HII [Thermococcus onnurineus NA1] Length = 227 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 28/205 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS-SAII 81 AGIDE GRG + GP+V+AA+++D N+P G+ DSKK++ K+RE L+++I Sbjct: 4 AGIDEAGRGPVLGPMVIAAVVVDEGNVPKLEELGVKDSKKLTPKRRERLFDEIVQLLDDY 63 Query: 82 SISSASHQYIDKH-------------NIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 I + ID + + + + + D Sbjct: 64 VILELWPEEIDSREGTLNEFEVENFVKALNSLKVKPDVVYIDAADVKEARFGEEIKAKLD 123 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQV 187 A K D + ++AASI+AKV RDR + +Y + G GYP+ + + Sbjct: 124 FEADIIAEHKADDKFVPVSAASILAKVARDRAIEKLKDQYGEIG----SGYPSDPRTRTF 179 Query: 188 I----KEKG-PSCIHRLTFRPLRNL 207 + ++ G I R T++ L+ + Sbjct: 180 LEEYYRKHGEFPPIVRRTWKTLKKI 204 >gi|315230435|ref|YP_004070871.1| ribonuclease HII [Thermococcus barophilus MP] gi|315183463|gb|ADT83648.1| ribonuclease HII [Thermococcus barophilus MP] Length = 227 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 28/204 (13%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS-SAIIS 82 GIDE GRG + GP+V+AA+++D N G+ DSKK++ ++RE+L+ +I + Sbjct: 8 GIDEAGRGPVIGPLVIAAVVIDEKNLSKLEALGVRDSKKLTPRRREKLFNEIIELLDDYA 67 Query: 83 ISSASHQYIDK----HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC------- 131 I S + ID+ N + ++ Sbjct: 68 IIELSPEQIDEREGTMNEFEIENFVRVLNSLKVKPDVLYIDAADIKEKRFGEIIGKGLNF 127 Query: 132 --QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188 + A K D+ L ++AASI+AKVTRD+ + K+Y + G GYP+ + ++ + Sbjct: 128 SPKIIAEHKADAKYLPVSAASILAKVTRDKAIEKLKKQYGEIG----SGYPSDPRTRKFL 183 Query: 189 ----KEKG-PSCIHRLTFRPLRNL 207 KE G I R +++ LR + Sbjct: 184 EEYYKEHGEFPPIVRKSWKTLRKI 207 >gi|224006103|ref|XP_002292012.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972531|gb|EED90863.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 341 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 63/257 (24%) Query: 12 FELEAMVREKNMWPVAGIDEVG-RGALAGPVVVAAIIL---------------------- 48 LE + + V G D+ G G +AGPVVVA+ L Sbjct: 83 LALETDLHSRGYQFVIGSDDSGGAGCIAGPVVVASCCLLQPFSAVLPLDVSTKQSTAADK 142 Query: 49 ----DPNNIPFGINDSKKISHKKREELYEKITSSAIIS---ISSASHQYIDKHNIHKATL 101 I +NDSK ++ ++R ++Y I + + ++ S Q ID N+ +AT Sbjct: 143 LLSQSEMEIMAIVNDSKTLTPQQRIDVYNVICAHPDVFAVSVAQRSPQEIDDINLTRATQ 202 Query: 102 DAIYHAVENLQVIPRSALIDGRSIPEDLPCQ----------------------------- 132 A ++E+L +I + Sbjct: 203 LAFAESIESLVENYNLPFDKIYAIVDGKVSPKLYALQSSDTESSMQQQQSTQQSQQAAPK 262 Query: 133 ---AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIK 189 GD+ ++A +SI+A+V+RD ++ H +YP YGFD ++GY + +H + + Sbjct: 263 RFSVRPYTNGDANVFTVALSSIVARVSRDAIIAELHDQYPSYGFDENLGYGSREHVEAVH 322 Query: 190 EKG-PSCIHRLTFRPLR 205 G + +HRL+F+ ++ Sbjct: 323 RLGALTGVHRLSFKQVK 339 >gi|229821017|ref|YP_002882543.1| Ribonuclease H [Beutenbergia cavernae DSM 12333] gi|229566930|gb|ACQ80781.1| Ribonuclease H [Beutenbergia cavernae DSM 12333] Length = 273 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 87/230 (37%), Gaps = 49/230 (21%) Query: 10 PHFELEAMVREK-NMWPVAGIDEVGRGALA--------------GPVVVAAIILDPNNIP 54 P E + E VAG+DEVGRG LA G P Sbjct: 18 PSRAFERELAESVPGGLVAGMDEVGRGCLAGPVSVGVVVVGPATG------------RTP 65 Query: 55 FGINDSKKISHKKREELYEKITSSAIISISSASHQ-YIDKHNIHKATLDAIYHAVENLQV 113 G+ DSK ++ RE L + A S + + ID+ I A A + A+ +L Sbjct: 66 AGLRDSKLLTPAARERLVPPVRRWAFASAVAHASAAEIDEIGIIAALRLAGHRALGSLAA 125 Query: 114 IPRSALIDGRSIPEDL---------------------PCQAFAVIKGDSISLSIAAASII 152 D +K D +AAAS++ Sbjct: 126 DGVVPGALILDGSHDWLTPPQPDLFEALEPPVAPTAFVPPVRMRVKADLTCSVVAAASVL 185 Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 AK RD LMR+ H +PD+ + S+ GY +H ++E GP+ +HR ++R Sbjct: 186 AKCERDGLMRVLHDDHPDFDWASNKGYAAPEHLAALRELGPTVLHRRSWR 235 >gi|329947878|ref|ZP_08294810.1| ribonuclease HII [Actinomyces sp. oral taxon 170 str. F0386] gi|328523502|gb|EGF50600.1| ribonuclease HII [Actinomyces sp. oral taxon 170 str. F0386] Length = 240 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 84/226 (37%), Gaps = 36/226 (15%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAII---LDPNNIPFGINDSKKISH 65 RP LE + E V G+DEVGRGALAGPV V I + P + DSK+++ Sbjct: 8 RPDRSLENELLEA-HEYVGGLDEVGRGALAGPVSVGLAIVGRCTDDAFPVDLADSKQLTA 66 Query: 66 KKR----EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 + R E + + A+ S A + V + P ++D Sbjct: 67 RMRTDLVEPVRGWLLDHAVAHASPAEIDERGIVGALRLAGRRALRQVADRGHAPGIIILD 126 Query: 122 GRSIP-----------EDLPCQAFAVIKGDSISLSIAA---------------ASIIAKV 155 G + + A + + + AS++AKV Sbjct: 127 GVADWLTAPQPDLLTTWGDGQPSQAWHEATAEPPTPPVRMEVKADARCAVVAAASVLAKV 186 Query: 156 TRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 RD LM P YG+ S+ GY + H + + G S HR ++ Sbjct: 187 ERDSLMTDLTD--PGYGWASNKGYASPAHVAGLADLGASDQHRRSW 230 >gi|18978153|ref|NP_579510.1| ribonuclease HII [Pyrococcus furiosus DSM 3638] gi|24638181|sp|Q8U036|RNH2_PYRFU RecName: Full=Ribonuclease HII; Short=RNase HII gi|18893958|gb|AAL81905.1| RNaseH II [Pyrococcus furiosus DSM 3638] Length = 224 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 28/206 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-I 80 + GIDE GRG GP+VVA +++D NI G+ DSK+++ +R+ L+ +ITS A Sbjct: 3 IGGIDEAGRGPAIGPLVVATVVVDEKNIEKLRNIGVKDSKQLTPHERKNLFSQITSIADD 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED------------ 128 I S + ID + L+ A+ + + ALI + D Sbjct: 63 YKIVIVSPEEIDNRSGTMNELEVEKFALALNSLQIKPALIYADAADVDANRFASLIERRL 122 Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 + A K D+ ++AASI+AKV RD + K+Y D+G GYP+ K ++ Sbjct: 123 NYKAKIIAEHKADAKYPVVSAASILAKVVRDEEIEKLKKQYGDFG----SGYPSDPKTKK 178 Query: 187 VIKEK-----GPSCIHRLTFRPLRNL 207 ++E I R T+ +R + Sbjct: 179 WLEEYYKKHNSFPPIVRRTWETVRKI 204 >gi|242398404|ref|YP_002993828.1| Ribonuclease HII [Thermococcus sibiricus MM 739] gi|259494074|sp|C6A1I4|RNH2_THESM RecName: Full=Ribonuclease HII; Short=RNase HII gi|242264797|gb|ACS89479.1| Ribonuclease HII [Thermococcus sibiricus MM 739] Length = 224 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 28/204 (13%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA-IIS 82 GIDE GRG + GP+V+AA+++D + I G+ DSKK+S KKREEL+EKI Sbjct: 5 GIDEAGRGPVVGPLVIAAVVIDESKIEKFEALGVKDSKKLSPKKREELFEKIIELVDDYF 64 Query: 83 ISSASHQYIDKHNIHKATLDAIYH-------------AVENLQVIPRSALIDGRSIPEDL 129 I S + IDK + + + Sbjct: 65 ILELSPEDIDKREGTMNDFEVENFAKVLNSLKIKPDLVYIDAADVNEERFGIVVREKLSF 124 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188 + A K DS + +AAASI+AKVTRD+ + + Y + G GYP+ ++ + Sbjct: 125 YPKIIAEHKADSKYIPVAAASILAKVTRDKAIERLKEIYGNIG----SGYPSDPITRKFL 180 Query: 189 ----KEKG-PSCIHRLTFRPLRNL 207 KE G + R +++ L+ + Sbjct: 181 EEYYKEHGSFPPVVRRSWKTLKKI 204 >gi|237752170|ref|ZP_04582650.1| rnase [Helicobacter winghamensis ATCC BAA-430] gi|229376412|gb|EEO26503.1| rnase [Helicobacter winghamensis ATCC BAA-430] Length = 161 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 5/158 (3%) Query: 50 PNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVE 109 P ++ + DSK +S KKR+ L + A I ID + +A+ + Sbjct: 7 PESLKNSLRDSKTLSQKKRDALANILKDYATFKIIKKEANEIDTKGLSACIKEALQEILS 66 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + + KGDS +I+AASI+AK +D M H YP Sbjct: 67 TIYAPFYIFDGNCNFKIPH----LKTLTKGDSKLHTISAASILAKSAKDAEMLEFHALYP 122 Query: 170 DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 Y F + GY T H Q I G S IHR ++R +++L Sbjct: 123 HYDFARNKGYGTKAHIQAIATHGLSPIHRKSYR-IKSL 159 >gi|88602504|ref|YP_502682.1| ribonuclease HII [Methanospirillum hungatei JF-1] gi|115305550|sp|Q2FP80|RNH2_METHJ RecName: Full=Ribonuclease HII; Short=RNase HII gi|88187966|gb|ABD40963.1| RNase HII [Methanospirillum hungatei JF-1] Length = 212 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 25/205 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAIIS 82 + G+DE G+G++ GP+VVAA+ + G+ DSKK+S K RE++ I + S Sbjct: 1 MICGVDEAGKGSVLGPMVVAAVGCTDMDDLIALGVADSKKLSSKSREKISADIKAQFPFS 60 Query: 83 I-------------SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 I + ++ + + + A + + + S Sbjct: 61 IVIRTAHDIDELRRTMTMNEIVARSHAEALIPLNCTCAYVDACDVSEERYEETVSSFSPP 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188 C A K DS+ ++AASIIAKV RDR++ K+Y D G GYP+ + Sbjct: 121 DCTIVARHKADSLFPPVSAASIIAKVERDRIIEELSKEYGDIG----SGYPSDPVTITYL 176 Query: 189 KEK-----GPSCIHRLTFRPLRNLS 208 + P I R ++ ++NL Sbjct: 177 TKYIRHHNQPPVIARSSWETVKNLL 201 >gi|70606743|ref|YP_255613.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639] gi|109896186|sp|Q4JA60|RNH2_SULAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|68567391|gb|AAY80320.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639] Length = 212 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 24/202 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81 GIDE GRG+L GP+VVA + +D N + F G+ DSKK++ KKRE L+ I + I Sbjct: 4 VGIDEAGRGSLIGPMVVAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLFGVILEYSYAI 63 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR--------SIPEDLPCQA 133 S+ A + ID N+++ T A+ + ++ V S + + ++ Sbjct: 64 SLVKAYPEEIDSENLNEITYRAMIQIIHSMSVYNPSIVTVDKVGNASAVEREIININSSP 123 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY-PTAKHQQVIKEK- 191 D + ++AASIIAKV RD ++ K Y D+G GY K + IK+ Sbjct: 124 RVENNADVKYVEVSAASIIAKVVRDNIINELKKTYGDFG----SGYPGDKKTVEWIKDLY 179 Query: 192 --GPS---CIHRLTFRPLRNLS 208 P+ I R +++ L++++ Sbjct: 180 SRQPTYALPIIRRSWKILQDIA 201 >gi|145636492|ref|ZP_01792160.1| ribonuclease HII [Haemophilus influenzae PittHH] gi|145270317|gb|EDK10252.1| ribonuclease HII [Haemophilus influenzae PittHH] Length = 111 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 48/106 (45%), Positives = 67/106 (63%) Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + A+ AV++L++ P L+DG IP+DL A AV+KGDSI I+AASI+AKV RD+ Sbjct: 1 MLAMTRAVKSLKIQPHFVLVDGNKIPKDLDIPAQAVVKGDSIVAEISAASILAKVARDQE 60 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 M K+YP+Y F H GYPT H + + E G HR +F P++ Sbjct: 61 MEELDKQYPEYAFAKHKGYPTKLHLEKLAEFGTLPQHRRSFAPVKK 106 >gi|327401115|ref|YP_004341954.1| ribonuclease HII [Archaeoglobus veneficus SNP6] gi|327316623|gb|AEA47239.1| ribonuclease HII [Archaeoglobus veneficus SNP6] Length = 212 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 24/204 (11%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI 80 VAGIDE G+G + GP+VV + G+ DSK++S K+REEL +I + Sbjct: 3 RVAGIDEAGKGPVIGPMVVCGVCCSEEELVELEKIGVRDSKRLSPKRREELAREIKKLSN 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHA-----------VENLQVIPRSALIDGRSIPEDL 129 + + + +D+ K + + + + ++ + Sbjct: 63 VYVIKLEPEKLDRLMEKKTINEILTDCYAEIINELNPDLTFVDSPDVIPERLSEALKKRT 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188 + A+ + D + ++AASI+AKV RDR + K+ G D GY + + + + Sbjct: 123 GKEVKAMHRADVLKPVVSAASIVAKVERDREIEKIKKEL---GVDFGSGYASDKRTIEFL 179 Query: 189 ----KEKG-PSCIHRLTFRPLRNL 207 KE G R +++ L + Sbjct: 180 KEYFKEHGRFPPYVRRSWKTLDRI 203 >gi|332157881|ref|YP_004423160.1| ribonuclease HII [Pyrococcus sp. NA2] gi|331033344|gb|AEC51156.1| ribonuclease HII [Pyrococcus sp. NA2] Length = 219 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 28/207 (13%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS-A 79 + G+DE GRG + GP+V+ A+++ + G+ DSK+++ ++RE ++++I + Sbjct: 2 RIGGVDEAGRGPVIGPLVIVAVVISEDMLSDLRSIGVRDSKQLTPEQRERIFDEIVNVLD 61 Query: 80 IISISSASHQYIDKHN--------IHKATLDAIYHAVENLQVIPRSALIDGR-----SIP 126 S+ S Q ID + A + + + + + + R Sbjct: 62 DYSVVVVSPQEIDNRSSSLNLLEVEKFALALNSLNVKPSRIYVDSADVDEKRFASLIRAK 121 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQ 185 + + A K D+ +AAASI+AKV RDR + ++Y D+G GYP+ + + Sbjct: 122 LNYNAEVIAEHKADAKYEVVAAASILAKVIRDREIEKLKERYGDFG----SGYPSDPRTR 177 Query: 186 QVI----KEKG-PSCIHRLTFRPLRNL 207 + + KE G I R ++ ++ + Sbjct: 178 RWLEEYYKEYGEFPPIVRRSWDTVKRI 204 >gi|154151483|ref|YP_001405101.1| ribonuclease HII [Candidatus Methanoregula boonei 6A8] gi|166226624|sp|A7I9P7|RNH2_METB6 RecName: Full=Ribonuclease HII; Short=RNase HII gi|154000035|gb|ABS56458.1| ribonuclease HII [Methanoregula boonei 6A8] Length = 213 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 25/205 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAII- 81 + G+DE G+G++ GP+V+A + + + FG+ DSK++S +RE L+ I + Sbjct: 1 MICGVDEAGKGSVLGPMVIAGVGVGSTEMIDGFGLRDSKQLSPSERERLFVLIKKKCKVA 60 Query: 82 -------SISSASHQYIDKHNIHKAT-----LDAIYHAVENLQVIPRSALIDGRSIPEDL 129 I + + + +A A A + + + Sbjct: 61 TVVISAAEIDAFRREMTLNTCVARAHAVVIAQLAPEIAYVDACDVNPFRYAETVRGYLSS 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188 PC+ + DS ++AASI+AKVTRDR + KKY G GYP+ + + Sbjct: 121 PCEIVSEHHADSTYPVVSAASIVAKVTRDREIAKLAKKYGQIG----SGYPSDPETIAYL 176 Query: 189 KEK-----GPSCIHRLTFRPLRNLS 208 P I R +++ + L Sbjct: 177 NAYIDEHRIPPPIARKSWKTVSTLL 201 >gi|134104116|pdb|2DFE|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-200)-C Length = 209 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 28/206 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 82 SISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE----- 127 + + + A ++ + + + R E Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 + + A K D I ++AASI+AKVTRDR + ++Y + G GYP+ + + Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178 Query: 187 VI----KEKG-PSCIHRLTFRPLRNL 207 + +E G I R ++ +++ Sbjct: 179 FLENYYREHGEFPPIVRKGWKTTQDM 204 >gi|14591420|ref|NP_143500.1| ribonuclease HII [Pyrococcus horikoshii OT3] gi|7227917|sp|O59351|RNH2_PYRHO RecName: Full=Ribonuclease HII; Short=RNase HII gi|50513813|pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus Horikoshii Ot3 gi|50513814|pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus Horikoshii Ot3 gi|3258079|dbj|BAA30762.1| 220aa long hypothetical ribonuclease H II [Pyrococcus horikoshii OT3] Length = 220 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 28/206 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK-ITSSAI 80 VAG+DE GRG + GP+V+ ++D NI G+ DSK+++ +RE+L+ K I Sbjct: 3 VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDILDD 62 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED------------ 128 + + + ID+ + L+A V + + I S D Sbjct: 63 YYVLLVTPKEIDERHHSMNELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKAGL 122 Query: 129 -LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 A K D+ ++AASIIAKVTRDR + +KY ++G GYP+ + ++ Sbjct: 123 KYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQKYGEFG----SGYPSDPRTKE 178 Query: 187 VI----KEKG-PSCIHRLTFRPLRNL 207 + K+ G I R T+ R + Sbjct: 179 WLEEYYKQYGDFPPIVRRTWETARKI 204 >gi|145640735|ref|ZP_01796318.1| ribonuclease HII [Haemophilus influenzae R3021] gi|145274661|gb|EDK14524.1| ribonuclease HII [Haemophilus influenzae 22.4-21] Length = 111 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 46/106 (43%), Positives = 66/106 (62%) Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + A+ AV++L++ P L+DG IP+DL AV+KGDS+ I+AASI+AKV RD+ Sbjct: 1 MLAMTRAVKSLKIQPHFVLVDGNKIPKDLAIPVQAVVKGDSLVAEISAASILAKVARDQE 60 Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 M K+YP+Y F H GYPT H + + E G HR +F P++ Sbjct: 61 MEELDKQYPEYAFAQHKGYPTKLHLEKLAELGALPQHRRSFAPVKK 106 >gi|69246757|ref|ZP_00604105.1| Ribonuclease H [Enterococcus faecium DO] gi|68195111|gb|EAN09571.1| Ribonuclease H [Enterococcus faecium DO] Length = 151 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 2/126 (1%) Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I I Q ID NI++A+ A+ AVE L ++P LID ++ DLP Q +IKGD Sbjct: 25 IGIGIVDQQTIDDVNIYEASKLAMIQAVEKLSIVPSYLLID--AMTLDLPIQQEKIIKGD 82 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + S+SIAAASIIAKV RD+LM+ YP YGF + GY T +H + ++ +G + IHR + Sbjct: 83 ARSVSIAAASIIAKVYRDQLMKEYDVLYPGYGFSHNAGYGTKEHLEGLERQGITPIHRKS 142 Query: 201 FRPLRN 206 F P++ Sbjct: 143 FAPVKK 148 >gi|45358937|ref|NP_988494.1| ribonuclease HII [Methanococcus maripaludis S2] gi|73917612|sp|Q6LXH7|RNH2_METMP RecName: Full=Ribonuclease HII; Short=RNase HII gi|45047803|emb|CAF30930.1| Ribonuclease HII [Methanococcus maripaludis S2] Length = 242 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 32/213 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 + G+DE GRG + GP+V+A++ +D N + DSK++S KKREELY I Sbjct: 21 KIIVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELYIIINEMC 80 Query: 80 IISISSASHQYIDKHN------------------IHKATLDAIYHAVENLQVIPRSALID 121 + + IDK D I ++ +S Sbjct: 81 DVEKIVIDPETIDKQMEIINLNKIELSAFSKLSNHFIRENDNISIYIDACSSSEQSFSNQ 140 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 ++ + + A K D ++AASIIAKVTRDR++ + + + G GYP+ Sbjct: 141 FKAKLINKNVEIIAEHKADENYKIVSAASIIAKVTRDRVIEEYKETFGEIG----SGYPS 196 Query: 182 -AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 K ++ +K I R ++ +NL Sbjct: 197 DPKTKKFLKNYVYENRTLPKIARKSWATSKNLL 229 >gi|149004282|ref|ZP_01829059.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69] gi|147757776|gb|EDK64790.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69] Length = 134 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 56/129 (43%), Positives = 82/129 (63%), Gaps = 2/129 (1%) Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 I I +Q ID+ NI++AT A+ A+ L P LID + DLP ++IKGD Sbjct: 3 IGIGIIDNQVIDQVNIYEATKLAMQEAISQLSPQPEHLLIDAMKL--DLPISQTSIIKGD 60 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + SLSIAAASI+AKVTRD LM+ +++P Y F ++ GY TAKH + + + G + IHR + Sbjct: 61 ANSLSIAAASIVAKVTRDELMKEYDQQFPGYDFATNAGYGTAKHLEGLTKLGVTPIHRTS 120 Query: 201 FRPLRNLSV 209 F P+++L + Sbjct: 121 FEPVKSLVL 129 >gi|73670221|ref|YP_306236.1| ribonuclease HII [Methanosarcina barkeri str. Fusaro] gi|97182902|sp|Q468N6|RNH2_METBF RecName: Full=Ribonuclease HII; Short=RNase HII gi|72397383|gb|AAZ71656.1| RNase HII [Methanosarcina barkeri str. Fusaro] Length = 224 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 35/215 (16%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 +AGIDE G+G + GP+ + + ++ + G+ DSKK++ KKRE+L +I A Sbjct: 2 MIAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLAAQIKKHAD 61 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVE--------------------NLQVIPRSAL 119 + S ID+ + + Sbjct: 62 GFFVLEVSPSQIDELRKIMTMNEIMVVCFSKVLEQLKPDLLYADAADVNAERFATNIRKQ 121 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + + ++ + D+ ++AASIIAKV RD L+ K ++G D GY Sbjct: 122 YSKTNPDHAKEIEIISMHQADATYPVVSAASIIAKVRRDELIEELKK---EWGLDFGSGY 178 Query: 180 PT-AKHQQVIKEKG------PSCIHRLTFRPLRNL 207 P+ K ++ + G I R +++ + N+ Sbjct: 179 PSDPKTKEFLLNWGKEHSGEFPEIVRQSWQTVENI 213 >gi|284161145|ref|YP_003399768.1| ribonuclease HII [Archaeoglobus profundus DSM 5631] gi|284011142|gb|ADB57095.1| ribonuclease HII [Archaeoglobus profundus DSM 5631] Length = 211 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 25/205 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 +AGIDE G+G + GP+V+ ++ D + + G+ DSKK+ +KREELY I S Sbjct: 1 MIAGIDEAGKGPVIGPLVICGVLCDEETVEYLKSVGVKDSKKLDRRKREELYNIIKSLCK 60 Query: 81 ISISSASHQYIDKHNIHKATLD-------AIYHAVENLQVIPRSALIDGRSIPEDLP--- 130 + + S + +++ + + + I ++ V I+ ++ Sbjct: 61 VKVLKISVEDLNRLMEYMSINEILKRAYVEIIRSLMPKVVYIDCPDINVERFKHEIEERT 120 Query: 131 -CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVI 188 + FA K D I ++ ASI+AKV RD + K Y D+G GYP+ + + + Sbjct: 121 GVEVFASHKADEIYPIVSIASIVAKVERDFEIDKLKKIYGDFG----SGYPSDLRTIEFL 176 Query: 189 KEK-----GPSCIHRLTFRPLRNLS 208 + I R ++ L+ L+ Sbjct: 177 RSYLREHKSFPPIVRKRWKTLKRLT 201 >gi|15920736|ref|NP_376405.1| ribonuclease HII [Sulfolobus tokodaii str. 7] gi|74574695|sp|Q974Z3|RNH2_SULTO RecName: Full=Ribonuclease HII; Short=RNase HII gi|15621519|dbj|BAB65514.1| 208aa long hypothetical ribonuclease HII [Sulfolobus tokodaii str. 7] Length = 208 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 23/203 (11%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 V GIDE GRG+L GP++VA + + + + F G+ DSK+++ +RE+L++ I S + Sbjct: 2 IVVGIDEAGRGSLIGPMIVAGVAIKNDRLKFLKNIGVKDSKQLTRNRREKLFDIICSYSE 61 Query: 81 -ISISSASHQYIDKHN----IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 +I S + ID N +KA + IY VE + + + E + Sbjct: 62 GFTIVKVSPEEIDSENLNELTYKAMIKIIYSLVEFKPIRISIDKVGNTKVVEQEIIKLGM 121 Query: 136 VI----KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE 190 D + +AASIIAKV RD ++ KY D+G GYP+ K +K Sbjct: 122 EPNIVTNADVYFVEASAASIIAKVIRDNIIDTLKSKYGDFG----SGYPSDPKTVNWVKN 177 Query: 191 -----KGPSCIHRLTFRPLRNLS 208 P I R +++ L+ ++ Sbjct: 178 VYKEYLTPPPIIRRSWKILQEIA 200 >gi|320096209|ref|ZP_08027796.1| ribonuclease HII [Actinomyces sp. oral taxon 178 str. F0338] gi|319976857|gb|EFW08613.1| ribonuclease HII [Actinomyces sp. oral taxon 178 str. F0338] Length = 225 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 65/212 (30%), Positives = 93/212 (43%), Gaps = 26/212 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN--NIPFGINDSKKISHKKREEL 71 E + ++ VAG+DEVGRG+LAGPV V + P + P G+ DSK ++ K+RE L Sbjct: 10 FEQSLADQ-FGVVAGVDEVGRGSLAGPVAVGVALTSPGAADPPAGLVDSKALTAKRREAL 68 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAV--------------------EN 110 + A ++ A ID+ I A A A+ Sbjct: 69 APAVRQWALDCAVGWAGPDEIDQWGIVAALRLAGLRALDELAGRGRVPGAVVLDGSHNWL 128 Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + G P P A +K D+ +AAAS+IAKV RDRLM P Sbjct: 129 AMPEDLLGGLGGPDYPPPCPAPIRARVKADASCAVVAAASVIAKVERDRLMAELDD--PG 186 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 Y + + GY +A H + E GPS HR +++ Sbjct: 187 YEWSRNKGYASAAHIAALAELGPSAHHRRSWK 218 >gi|119719808|ref|YP_920303.1| ribonuclease HII [Thermofilum pendens Hrk 5] gi|189043673|sp|A1RYM0|RNH2_THEPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|119524928|gb|ABL78300.1| RNase HII [Thermofilum pendens Hrk 5] Length = 213 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 35/216 (16%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78 M VAGIDE GRG + GP+VVA ++ +P G+ DSK +S ++R L I S Sbjct: 1 MGRVAGIDEAGRGPMLGPMVVAIVVCPEEKVPLLRNMGVRDSKALSPRRRLLLSRAIPSV 60 Query: 79 -AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL-------- 129 + + Q ID + + + + L +G + Sbjct: 61 GCSVKVRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGELEVVYMDSPDPVPS 120 Query: 130 ------------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + A D + AASI+AK TRD ++ K Y D+G Sbjct: 121 RFEERVRALLKGQVRIVAENGADEKYTIVGAASIVAKETRDEIINALKKTYGDFG----S 176 Query: 178 GYPT-AKHQ----QVIKEKG-PSCIHRLTFRPLRNL 207 GYP+ + + +++ G P I R + + L Sbjct: 177 GYPSDPRTLRFAEEWVRKHGEPPPIARKEWATWKRL 212 >gi|21228916|ref|NP_634838.1| ribonuclease HII [Methanosarcina mazei Go1] gi|34395785|sp|Q8PTA3|RNH2_METMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|20907449|gb|AAM32510.1| Ribonuclease [Methanosarcina mazei Go1] Length = 220 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 35/215 (16%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 +AGIDE G+G + GP+ + + +D + G+ DSKK++ KKRE+L +I A Sbjct: 2 MIAGIDEAGKGPVIGPMCIGGVKIDESKAHILKVLGVADSKKLTPKKREQLASQIKKHAD 61 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAV--------------------ENLQVIPRSAL 119 I S ID+ + + + Sbjct: 62 GYFIFEVSPSQIDELRKIMSMNEIMVVCFAKVLEQLKPDIVYADAADVKAERFAENLLRQ 121 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 S + ++ + D+I ++AASIIAKV RD L+ + ++ D GY Sbjct: 122 YAKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDELIEELKR---EWCIDFGSGY 178 Query: 180 PT-AKHQQVI----KEKG--PSCIHRLTFRPLRNL 207 P+ K + + KE G I R +++ + N+ Sbjct: 179 PSDPKTRGFLLKWGKEHGGDFPDIVRQSWQTVENI 213 >gi|297520198|ref|ZP_06938584.1| ribonuclease HII [Escherichia coli OP50] Length = 128 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 51/119 (42%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 ID+ NI AT+ A+ AV L + P LIDG P+ + AV+KGDS I+ Sbjct: 5 PYEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPM-PSMAVVKGDSRVPEIS 63 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 AASI+AKVTRD M +P YGF H GYPTA H + + E G + HR +F P++ Sbjct: 64 AASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEYGATEHHRRSFGPVKR 122 >gi|291533379|emb|CBL06492.1| Ribonuclease HII [Megamonas hypermegale ART12/1] Length = 136 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 1/119 (0%) Query: 89 QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAA 148 + ID+ NI++A ++ +Y A+ L P + LID E L ++IKGD+ S SIAA Sbjct: 15 KTIDRVNIYQAAMNGMYEAIYGLNPKPDAVLIDAM-PLESLDIYHQSIIKGDAKSASIAA 73 Query: 149 ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 ASI+AKV RDR+M K YP YGF + GY T++H + +++ GP IHR +F P++++ Sbjct: 74 ASIVAKVERDRMMNEFDKIYPQYGFAKNKGYGTSEHLEALRKYGPCEIHRKSFEPIKSM 132 >gi|266625575|ref|ZP_06118510.1| ribonuclease HII [Clostridium hathewayi DSM 13479] gi|288862520|gb|EFC94818.1| ribonuclease HII [Clostridium hathewayi DSM 13479] Length = 130 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 52/126 (41%), Positives = 71/126 (56%), Gaps = 3/126 (2%) Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 ++ + ID+ NI +AT +A+ AV L P L++ L +IKGD Sbjct: 5 FAVGVVGPERIDEINILQATYEAMRLAVSQL-TNPPQVLLNDAVTIPGLDILQVPIIKGD 63 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLT 200 + S+SIAA SI+AKVTRD +M K +P+YGF H GY TA H +KE GP IHR + Sbjct: 64 AKSVSIAAGSIMAKVTRDHMMVEYDKLFPEYGFAKHKGYGTAAHIAALKEFGPCAIHRRS 123 Query: 201 FRPLRN 206 F +RN Sbjct: 124 F--IRN 127 >gi|14278646|pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus gi|14278647|pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt Hexammine Chloride Length = 225 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 22/208 (10%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELYEKI 75 + + AGIDE G+G + GP+VVA + + G+ DSKK+S +REEL E+I Sbjct: 14 LVPRGSHMKAGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEI 73 Query: 76 TSSAIISISSASHQYIDKHN-----------IHKATLDAIYHAVENLQVIPRSALIDGRS 124 + S + +D+ + + + + + R Sbjct: 74 RKICRTEVLKVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRE 133 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AK 183 + E + A K D +AAASIIAKV R+R + +K+ D+G GY + + Sbjct: 134 LEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG----SGYASDPR 189 Query: 184 HQQVIKEK---G-PSCIHRLTFRPLRNL 207 ++V+KE G R+ ++ + NL Sbjct: 190 TREVLKEWIASGRIPSCVRMRWKTVSNL 217 >gi|15679041|ref|NP_276158.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta H] gi|7227913|sp|O27102|RNH2_METTH RecName: Full=Ribonuclease HII; Short=RNase HII gi|2622126|gb|AAB85519.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta H] Length = 206 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 22/202 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG + GP+VVA +++ G+ DSKK++ ++R L KI A + Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMIPERKFSILRKMGVKDSKKLTPERRRFLARKIRRIARV 62 Query: 82 SISSASH-------------QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 S I+K I + +A V V + ++ Sbjct: 63 FTVKISASDIDRMRERGFNLNEIEKIAIKRIIPEAQPDRVIIDSVDVKPERLEEEIRSHF 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQV 187 + A D+ +AAASIIAKV RD + KK G D GYP+ + ++ Sbjct: 123 GEIEVTAEHGADTRYYPVAAASIIAKVERDLEIESIQKKNRKLG-DIGSGYPSDPRTREF 181 Query: 188 IKEK---GPSCIHRLTFRPLRN 206 ++ R ++ ++ Sbjct: 182 LESFTYDELPDFVRRSWATVQK 203 >gi|307595739|ref|YP_003902056.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429] gi|307550940|gb|ADN51005.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429] Length = 218 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 30/210 (14%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSSAII- 81 V GIDE GRG + GP+V+A + + N GI DSK++S R L+ + S+ Sbjct: 4 LVGGIDEAGRGPVIGPMVMAIAVTNDMNRLKAMGIRDSKELSPAGRARLFSILKSTLNYI 63 Query: 82 SISSASHQYIDKHNIHKATLDAI-----------------YHAVENLQVIPRSALIDGRS 124 + ID + A + D Sbjct: 64 DYEIVEPRVIDNYVYMNALNILEVEIAIKLINRALNSVSPQVVYIDSPDPRPERYRDMVK 123 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AK 183 + A+ D + ++AASI+AKV RD ++ H++Y D+G GYP+ + Sbjct: 124 RGVVGNVEVVAMNNADKLIPVVSAASIVAKVIRDSIIEELHREYGDFG----SGYPSDPR 179 Query: 184 H----QQVIKEKG-PSCIHRLTFRPLRNLS 208 + +K G I R ++ +R L Sbjct: 180 TMAFLRDWVKRHGDLPPIVRRSWSTVRKLL 209 >gi|16082425|ref|NP_394911.1| ribonuclease HII [Thermoplasma acidophilum DSM 1728] gi|11387092|sp|P57673|RNH2_THEAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|10640800|emb|CAC12578.1| probable ribonuclease HII [Thermoplasma acidophilum] Length = 212 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 21/199 (10%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK-ISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V++ + D + + K ++ K+R EL+EKI + Sbjct: 8 CGIDEAGRGPVIGPMVISLVCCDLSFLKEIRVKDSKALTRKRRSELFEKIMGRCSVRYRI 67 Query: 86 ASHQYIDKHNIHKATL----------DAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 + +++ ++ + + I Q Sbjct: 68 LHPKDLNRMMAAESLNKIEEDEIVDLLRYADDLVYIDCYDVIEERAQEIIQMRSGRQVVC 127 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK--- 191 K D+I +++AASI++KV RD + H ++ D+G GYP+ + +K+ Sbjct: 128 KHKADAIFPAVSAASIVSKVIRDAEIDRLHDRFGDFG----SGYPSDPRTIDFLKKYLKE 183 Query: 192 --GPSCIHRLTFRPLRNLS 208 PS I R+ + ++ L Sbjct: 184 NQDPSEIVRIHWSTVQRLL 202 >gi|289524535|ref|ZP_06441389.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502226|gb|EFD23390.1| ribonuclease HII [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 129 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 50/116 (43%), Positives = 68/116 (58%) Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 + +ID+ NI +ATL A+ A +L + P ++DG DL A+ K D L + Sbjct: 5 NPWFIDRANILQATLWAMEKAASSLPLSPDIVIVDGNQKIPDLSFPQKALPKADKNVLVV 64 Query: 147 AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 AASI+AKV RDR+M K YPDYGF H GYPT +H++ + G S IHR TF+ Sbjct: 65 GAASIVAKVIRDRVMCAYDKLYPDYGFAVHKGYPTKEHRRALALMGASPIHRKTFK 120 >gi|321159924|pdb|3P83|D Chain D, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus. gi|321159925|pdb|3P83|E Chain E, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus. gi|321159926|pdb|3P83|F Chain F, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus Length = 217 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 22/199 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIISIS 84 AGIDE G+G + GP+VVA + + G+ DSKK+S +REEL E+I + Sbjct: 15 AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 74 Query: 85 SASHQYIDKHN-----------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 S + +D+ + + + + + R + E + Sbjct: 75 KVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRV 134 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 A K D +AAASIIAKV R+R + +K+ D+G GY + + ++V+KE Sbjct: 135 VAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG----SGYASDPRTREVLKEWI 190 Query: 192 --G-PSCIHRLTFRPLRNL 207 G R+ ++ + NL Sbjct: 191 ASGRIPSCVRMRWKTVSNL 209 >gi|298674468|ref|YP_003726218.1| ribonuclease HII [Methanohalobium evestigatum Z-7303] gi|298287456|gb|ADI73422.1| ribonuclease HII [Methanohalobium evestigatum Z-7303] Length = 218 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 84/214 (39%), Gaps = 34/214 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA-I 80 VAGIDE G+G + G + +A +++D I G+ DSKKIS +KREEL KI Sbjct: 3 VAGIDEAGKGPVIGSMCIAGVVVDEAKINSLKNLGVTDSKKISPRKREELAHKIKKYVDN 62 Query: 81 ISISSASHQYIDKHNIHKATL----DAIYHAVENLQVIPRSALIDGRSIPED-------- 128 I + ID+ + VENL Sbjct: 63 YFIFEITPSQIDELRNVMSMNDIMVLGFSRVVENLNPELVYVDSADVKPERFAEKIRSEY 122 Query: 129 --------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + + D + ++AASIIAKV RD L+ +++ G D GYP Sbjct: 123 SKSNKTASENIKIISEHEADVVYSVVSAASIIAKVRRDELVNNLKEEF---GVDFGSGYP 179 Query: 181 ----TAKH-QQVIKEKG-PSCIHRLTFRPLRNLS 208 T + +K G I R +++ + L Sbjct: 180 SDPKTKQFLLDWVKRYGSLPDIVRHSWKTAQKLL 213 >gi|11498229|ref|NP_069455.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304] gi|7388077|sp|O29634|RNH2_ARCFU RecName: Full=Ribonuclease HII; Short=RNase HII gi|2650000|gb|AAB90620.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304] Length = 205 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 22/199 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIISIS 84 AGIDE G+G + GP+VVA + + G+ DSKK+S +REEL E+I + Sbjct: 3 AGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVL 62 Query: 85 SASHQYIDKHN-----------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 S + +D+ + + + + + R + E + Sbjct: 63 KVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRV 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 A K D +AAASIIAKV R+R + +K+ D+G GY + + ++V+KE Sbjct: 123 VAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG----SGYASDPRTREVLKEWI 178 Query: 192 --G-PSCIHRLTFRPLRNL 207 G R+ ++ + NL Sbjct: 179 ASGRIPSCVRMRWKTVSNL 197 >gi|304315158|ref|YP_003850305.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg] gi|302588617|gb|ADL58992.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg] Length = 207 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 22/202 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG + GP+VVA +++ GI DSKK++ ++R+ L KI + + Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMVPERKFSILRKMGIRDSKKLTPERRKFLARKIRRISRV 62 Query: 82 SISSASH-------------QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 S I+K I + +A +V V + + Sbjct: 63 FTVKISASDIDRMREKGFNLNEIEKIAIKRIIAEAQPDSVIIDSVDVKPERLTEEIRSHF 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQV 187 + A D+ +AAASIIAKV RD + K+ G D GYP+ + + Sbjct: 123 GDIEVKAEHGADAKYYPVAAASIIAKVERDLEIERIQKRNRKLG-DIGSGYPSDPRTRAF 181 Query: 188 IKEK---GPSCIHRLTFRPLRN 206 ++ R ++ ++ Sbjct: 182 LESFSYDELPDFVRKSWATVQK 203 >gi|170289973|ref|YP_001736789.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8] gi|170174053|gb|ACB07106.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8] Length = 217 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 83/207 (40%), Gaps = 30/207 (14%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 GIDE GRG + GP+VVAA+IL G+ DSK +S ++REEL+ I SA Sbjct: 2 GIDEAGRGPVIGPMVVAAVILKRREAKRLKEMGVTDSKLLSAERREELFPMIIESAESYL 61 Query: 83 ISSASHQYIDKHNIHKATLD--------------AIYHAVENLQVIPRSALIDGRSIPED 128 I + ID+ V++ R R D Sbjct: 62 IKVIEPKRIDEAVSKNMLNLLEAEVMSELIRELRPARVIVDSPMRNCRKFSDVLREFLGD 121 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY-PTAKHQQV 187 + A K DS + +A+ASIIAKV RDR +R + G + GY K ++ Sbjct: 122 SSVKIIAENKADSKYIQVASASIIAKVERDRRIRELSELT---GVEIGSGYPGDPKTREA 178 Query: 188 IK------EKGPSCIHRLTFRPLRNLS 208 I+ E P R + + L Sbjct: 179 IRMILKGAEF-PRDQVRWKWATINRLL 204 >gi|14520734|ref|NP_126209.1| ribonuclease HII [Pyrococcus abyssi GE5] gi|11387114|sp|Q9V1A9|RNH2_PYRAB RecName: Full=Ribonuclease HII; Short=RNase HII gi|5457950|emb|CAB49440.1| rnhB ribonuclease HII [Pyrococcus abyssi GE5] Length = 224 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 28/206 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKIT---SS 78 VAG DE GRG + GP+V+ A +++ + I G+ DSK+++ +RE+L+++I Sbjct: 3 VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQREKLFDEIVKVLDD 62 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID-----------GRSIPE 127 + I S K ++++ ++ A+ +L+V P ID Sbjct: 63 YSVVIVSPQDIDGRKGSMNELEVENFVKALNSLKVKPEVIYIDSADVKAERFAENIRSRL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 + A K D+ ++AASI+AKV RDR + +Y D+G GYP+ + ++ Sbjct: 123 AYEAKVVAEHKADAKYEIVSAASILAKVIRDREIEKLKAEYGDFG----SGYPSDPRTKK 178 Query: 187 VIK----EKG-PSCIHRLTFRPLRNL 207 ++ + G I R T+ + + Sbjct: 179 WLEEWYSKHGNFPPIVRRTWDTAKKI 204 >gi|256824957|ref|YP_003148917.1| ribonuclease HII [Kytococcus sedentarius DSM 20547] gi|256688350|gb|ACV06152.1| ribonuclease HII [Kytococcus sedentarius DSM 20547] Length = 252 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 87/221 (39%), Gaps = 48/221 (21%) Query: 15 EAMVREKNMWPVAGIDEVGRGALA----------------GPVVVAAIILDPNNIPFGIN 58 E + + VAG+DEVGRGALA PV G+ Sbjct: 24 ERELLRQGARRVAGMDEVGRGALAGPVSVGVVVVDAAVGTAPV--------------GVR 69 Query: 59 DSKKISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 DSK +S +RE L +++ + + A + ID H I A A A+ V Sbjct: 70 DSKDLSAARREGLVPQLSRWGVARGVGHAGPEEIDAHGIMAALRMAGRRALAAAGVEVDV 129 Query: 118 ALIDGRSIPEDLPCQ-------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 L+DG P + K D S+AAAS++AKV RD +M Sbjct: 130 VLLDGNHDWLTDPLRSGLFGLQGVAGPAVVTRTKADRTCSSVAAASVLAKVERDGIMTDL 189 Query: 165 HKKYPD---YGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 P YG++ + GY H+ + GPS HR ++R Sbjct: 190 AGA-PGCAAYGWERNKGYAAGDHRAALGSLGPSVHHRRSWR 229 >gi|229583211|ref|YP_002841610.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51] gi|228013927|gb|ACP49688.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51] Length = 212 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 23/199 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81 GIDE GRGAL GP++VA + + + + F G+ DSK+++ ++RE+L++ I + Sbjct: 3 IGIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLFDIIAITVDAF 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC--------QA 133 ++ ID +N++ T DA+ + +L V + + E ++ Sbjct: 63 TVVKVFPYEIDNYNLNDLTYDAVSKIILSLSVFNPEIVTVDKVGEEKPVIELIRKLGYKS 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 V K D + + +AASIIAKV RD + K Y D+G GYP + + +K Sbjct: 123 NVVHKADVLFVEASAASIIAKVIRDNYIDELKKVYGDFG----SGYPADPRTIKWLKSFY 178 Query: 192 ----GPSCIHRLTFRPLRN 206 P I R +++ LR+ Sbjct: 179 EKNPNPPPIVRRSWKILRS 197 >gi|329571610|gb|EGG53291.1| ribonuclease HII [Enterococcus faecalis TX1467] Length = 103 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 40/84 (47%), Positives = 59/84 (70%) Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 ++ D+P ++IKGD+ S+SIAAASIIAKVTRDRLM + YP YGF ++ GY T + Sbjct: 19 AMQLDVPQPQESLIKGDARSISIAAASIIAKVTRDRLMEEYDELYPGYGFKNNAGYGTKE 78 Query: 184 HQQVIKEKGPSCIHRLTFRPLRNL 207 H +++ G + IHR TF P++++ Sbjct: 79 HLLGLEKYGVTPIHRRTFAPIKDM 102 >gi|305663629|ref|YP_003859917.1| ribonuclease HII [Ignisphaera aggregans DSM 17230] gi|304378198|gb|ADM28037.1| ribonuclease HII [Ignisphaera aggregans DSM 17230] Length = 232 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 31/207 (14%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG L G + +A I+++ + + + G+ DSK++S +KR + + I ++ Sbjct: 4 HICGIDEAGRGPLIGDMFIAMIVINTDALKYLENIGVRDSKRLSREKRIKFFPIIIENSE 63 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVE----------------NLQVIPRSALIDGR 123 + IS + +D+ NI+K L+ + ++ I+ Sbjct: 64 LVLISRLTPSQLDEENINKLELNTVCRLIKKSISIVSTISEIYIDAFANPNKLLHYINSN 123 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-A 182 I + + D+ + + AASI+AKV RD + K Y D+G GYP+ Sbjct: 124 CIASNRSINVYIEHGADNKYVVVGAASIVAKVLRDTHIDNLKKVYGDFG----SGYPSDK 179 Query: 183 KHQQVIKEK-----GPSCIHRLTFRPL 204 K + ++ I R ++ + Sbjct: 180 KTIEWLRNYYAKHNALPPIVRKSWSTI 206 >gi|119872804|ref|YP_930811.1| ribonuclease HII [Pyrobaculum islandicum DSM 4184] gi|189043646|sp|A1RU36|RNH2_PYRIL RecName: Full=Ribonuclease HII; Short=RNase HII gi|119674212|gb|ABL88468.1| RNase HII [Pyrobaculum islandicum DSM 4184] Length = 195 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 20/199 (10%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKREELYEKITSSAII-- 81 + GIDE GRG + GP+V+AA+ D + G+ DSK +S KRE +Y +I A Sbjct: 1 MICGIDEAGRGPVVGPMVIAAVAGDGERLLQLGVRDSKTLSPTKREVIYARIIEVADCVN 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC---------Q 132 + H + + +++ P + Sbjct: 61 YVVVEPHIIDEYVRRRMLNSLELDFTARLIELCPAELYYVDSPDVNSRRYGDALSFITGR 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKEK 191 + G +AAASI+AKV RDRL+ I ++ D+G GYP+ K + ++ Sbjct: 121 RVVALHGGESVPQVAAASIVAKVIRDRLIDILKREIGDFG----SGYPSDVKTIEWLR-L 175 Query: 192 G--PSCIHRLTFRPLRNLS 208 G P R ++R LR L+ Sbjct: 176 GKIPVECVRRSWRTLRYLN 194 >gi|307353890|ref|YP_003894941.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571] gi|307157123|gb|ADN36503.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571] Length = 212 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 25/204 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIIS 82 + GIDE G+G++ GP+V+ + + G DSK +S ++RE+ YE+I + + Sbjct: 1 MICGIDEAGKGSVLGPMVIGGVAGKDLSEFVKKGFADSKTLSPRRREQFYEEIVAEFKTT 60 Query: 83 I-------------SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 S ++ + + + T A + + + S Sbjct: 61 TVVLSAAMIDELRSSMTMNEIVARSHARAITDLMPDTAYVDACDVNEVRYAETISGFLKN 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188 + K D + ++AASI+AKVTRDR++ ++ + G GYP+ + Sbjct: 121 DIAIVSKHKADDLYAVVSAASIVAKVTRDRMIEDLKSQWGNIG----SGYPSDPDTIAFL 176 Query: 189 KEK-----GPSCIHRLTFRPLRNL 207 K P I R++++ + N+ Sbjct: 177 KRYIEERGEPPSIARMSWKTISNM 200 >gi|227826588|ref|YP_002828367.1| ribonuclease HII [Sulfolobus islandicus M.14.25] gi|227829230|ref|YP_002831009.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15] gi|229577999|ref|YP_002836397.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14] gi|229583752|ref|YP_002842253.1| ribonuclease HII [Sulfolobus islandicus M.16.27] gi|238618674|ref|YP_002913499.1| ribonuclease HII [Sulfolobus islandicus M.16.4] gi|284996585|ref|YP_003418352.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5] gi|227455677|gb|ACP34364.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15] gi|227458383|gb|ACP37069.1| ribonuclease HII [Sulfolobus islandicus M.14.25] gi|228008713|gb|ACP44475.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14] gi|228018801|gb|ACP54208.1| ribonuclease HII [Sulfolobus islandicus M.16.27] gi|238379743|gb|ACR40831.1| ribonuclease HII [Sulfolobus islandicus M.16.4] gi|284444480|gb|ADB85982.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5] gi|323473667|gb|ADX84273.1| ribonuclease HII [Sulfolobus islandicus REY15A] gi|323476318|gb|ADX81556.1| ribonuclease HII [Sulfolobus islandicus HVE10/4] Length = 212 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 23/199 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81 GIDE GRGAL GP++VA + + + + F G+ DSK+++ ++RE+L++ I S+ Sbjct: 3 IGIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLFDIIASTVDAF 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC--------QA 133 ++ ID +N++ T DA+ + +L V + + E ++ Sbjct: 63 TVVKVFPYEIDNYNLNDLTYDAVSKIILSLSVFNPEIVTVDKVGEEKPVIELIRKLGYKS 122 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 V K D + + +AASIIAKV RD + K Y D+G GYP + + +K Sbjct: 123 NVVHKADVLFVEASAASIIAKVIRDNYIDELKKVYGDFG----SGYPADPRTIKWLKSFY 178 Query: 192 ----GPSCIHRLTFRPLRN 206 P I R +++ LR+ Sbjct: 179 EKNPNPPPIVRRSWKILRS 197 >gi|294623977|ref|ZP_06702767.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601724|gb|EFF45671.1| ribonuclease HII [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 132 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 44/89 (49%), Positives = 58/89 (65%) Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 A IDG +P+ LPC A A+I GD++ +I AASI+AKVTRDRLM H ++P+Y FD H Sbjct: 14 FARIDGNRVPKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMHELHTRHPEYRFDQH 73 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 GY T H ++ GP HR +F P+R Sbjct: 74 KGYSTPVHLAALQTHGPCPQHRRSFAPVR 102 >gi|20090807|ref|NP_616882.1| ribonuclease HII [Methanosarcina acetivorans C2A] gi|34395791|sp|Q8TPF4|RNH2_METAC RecName: Full=Ribonuclease HII; Short=RNase HII gi|19915872|gb|AAM05362.1| ribonuclease Hii [Methanosarcina acetivorans C2A] Length = 223 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 35/215 (16%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 +AGIDE G+G + GP+ + + ++ + G+ DSKK++ KKRE+L +I A Sbjct: 2 MIAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLASQIKKHAD 61 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAV--------------------ENLQVIPRSAL 119 I + ID+ + + + Sbjct: 62 GFFILEITPAQIDELRKIMSMNEIMVICFAKVLEQLKPDIVYADAADVKAERFAENLRRQ 121 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + + ++ + D+I ++AASIIAKV RD L+ K ++ D GY Sbjct: 122 YAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDELIEEIKK---EWSVDFGSGY 178 Query: 180 PT-AKHQQVIKEKG------PSCIHRLTFRPLRNL 207 P+ K + + + G I R +++ + N+ Sbjct: 179 PSDPKTKAFLLKWGKEHDGKFPEIVRQSWQTVENI 213 >gi|84490178|ref|YP_448410.1| ribonuclease HII [Methanosphaera stadtmanae DSM 3091] gi|115305551|sp|Q2NEI6|RNH2_METST RecName: Full=Ribonuclease HII; Short=RNase HII gi|84373497|gb|ABC57767.1| RnhB [Methanosphaera stadtmanae DSM 3091] Length = 212 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 25/204 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG++ GP+V+ +++ I F G+ DSK+++ KKR + KI A Sbjct: 9 ILGIDEAGRGSVIGPLVIGGVLMKKKKIRFLNRIGVKDSKQLNMKKRTIISRKIKKIAQF 68 Query: 82 SISSASHQYIDKHNI-----HKATLDAIYHAVENLQVIPRSALIDGRSIPEDL------- 129 ID+ ++ + + ++ ++ Sbjct: 69 KTIIIPAHTIDEKRNNDINLNEIETEGMEEIIKIMKPNACYIDCIDVRENRFHDKIQKIN 128 Query: 130 -PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH---- 184 K D ++AASIIAKV RD+ + I ++Y G GYP+ K+ Sbjct: 129 PNMTVVTEHKADETYKIVSAASIIAKVERDKQLEIIRQEYGSVG----SGYPSDKNTINY 184 Query: 185 QQVIKEKGPSCIHRLTFRPLRNLS 208 + IK I R T++ + N++ Sbjct: 185 LKTIKNNQFPPIIRKTWKTIENIT 208 >gi|4514315|dbj|BAA75362.1| RNaseH [Bacillus halodurans] Length = 192 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + K VAG+DEVGRG LAGPVV AA+IL + G+ DSKK++ + RE Sbjct: 62 LAYEKDLWAKGYEHVAGLDEVGRGPLAGPVVTAAVILPKDVQLPGLTDSKKLAKETRESF 121 Query: 72 YEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVEN 110 Y++I A S++ ID+ NI++AT + A++ Sbjct: 122 YDRIKEVALAWSVAIVPVTVIDEVNIYQATKQGMMSAIDQ 161 >gi|88191784|pdb|1X1P|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42) Length = 212 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 28/198 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 +AGIDE GRG + GP+V+AA+++D N++P + DSKK++ K+RE+L+ +I Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62 Query: 82 SISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE----- 127 + + + A ++ + + + R E Sbjct: 63 YVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERL 122 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 + + A K D I ++AASI+AKVTRDR + ++Y + G GYP+ + + Sbjct: 123 NFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRA 178 Query: 187 VI----KEKG-PSCIHRL 199 + +E G I R Sbjct: 179 FLENYYREHGEFPPIVRK 196 >gi|78047020|ref|YP_363195.1| ribonuclease HII [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035450|emb|CAJ23095.1| ribonuclease HII [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 129 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 44/89 (49%), Positives = 58/89 (65%) Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 A IDG +P+ LPC A A+I GD++ +I AASI+AKVTRDRLM H ++P+Y FD H Sbjct: 14 FARIDGNRVPKGLPCPAEALIGGDALDRAIMAASIVAKVTRDRLMHELHTRHPEYRFDQH 73 Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 GY T H ++ GP HR +F P+R Sbjct: 74 KGYSTPVHLAALQTHGPCPQHRRSFAPVR 102 >gi|329571609|gb|EGG53290.1| putative ribonuclease HII [Enterococcus faecalis TX1467] Length = 137 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 36/67 (53%), Positives = 44/67 (65%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E +K +AGIDEVGRG LAGPVV AA+IL + G+NDSKK+S KKRE LY Sbjct: 61 QFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRETLY 120 Query: 73 EKITSSA 79 +I A Sbjct: 121 NQIQEQA 127 >gi|159042290|ref|YP_001541542.1| ribonuclease HII [Caldivirga maquilingensis IC-167] gi|189043570|sp|A8MAH5|RNH2_CALMQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|157921125|gb|ABW02552.1| ribonuclease HII [Caldivirga maquilingensis IC-167] Length = 209 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 22/200 (11%) Query: 27 AGIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAII---- 81 AGIDE GRG + GP+V+A + + G+ DSK+++ R LY+ I S A Sbjct: 9 AGIDEAGRGPVIGPMVIAIVGWSNSEAEGIGVKDSKQLTPSGRSRLYKLIVSKAPCVRHV 68 Query: 82 -----SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ---A 133 I ++ + + I +V S + + + Sbjct: 69 IVEPSEIDYYVNRGLLNELEAIKMSELIKACSGVTRVYVDSPDPNPSRFRGFINVKDVEL 128 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE-- 190 + D ++AASI+AKV RD ++ + Y D+G GYP+ + ++ Sbjct: 129 IVLNHADESIPLVSAASIVAKVIRDTIISRLKETYGDFG----SGYPSDPRTISALRRWI 184 Query: 191 -KG-PSCIHRLTFRPLRNLS 208 G I R ++R ++ ++ Sbjct: 185 NNGTLPPIVRRSWRTIKRMT 204 >gi|313609088|gb|EFR84798.1| ribonuclease HII [Listeria monocytogenes FSL F2-208] Length = 142 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 33/67 (49%), Positives = 45/67 (67%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + E + ++ +AG+DEVGRG LAGPVV AA+IL + GINDSK++S KR+ LY Sbjct: 60 QYEKDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVVGINDSKQLSEAKRDALY 119 Query: 73 EKITSSA 79 E I + A Sbjct: 120 ETIQTEA 126 >gi|312137140|ref|YP_004004477.1| rnase hii [Methanothermus fervidus DSM 2088] gi|311224859|gb|ADP77715.1| RNase HII [Methanothermus fervidus DSM 2088] Length = 200 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 20/199 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAIISI 83 + GIDE GRG + GP++V +++D N + DSK +S ++R+ L ++I + I Sbjct: 3 ILGIDEAGRGPVLGPLIVCGVLVDDENKLKKLNVRDSKLLSPRRRKILAKEIKKVSKCFI 62 Query: 84 SSASHQYIDKHNI-----HKATLDAIYHAVENLQVIPRSALIDGRSIP------EDLPCQ 132 IDK I ++ A+ ++N + + Sbjct: 63 VKIQAYEIDKLRIAGISLNEIERIAMSKIIKNANPKKVIVDSIDIKPKRLKKKLQKENIE 122 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK 191 K D ++AASI+AKV RD + K+ Y D GYP K + +K+ Sbjct: 123 VIVEHKADEKYPVVSAASIVAKVERDSEIEKLKKR---YNCDLGSGYPNDPKTIKFLKKF 179 Query: 192 ---GPSCIHRLTFRPLRNL 207 R T+ + L Sbjct: 180 KRSELPDFVRKTWNTVEKL 198 >gi|124486303|ref|YP_001030919.1| ribonuclease HII [Methanocorpusculum labreanum Z] gi|189043623|sp|A2STJ6|RNH2_METLZ RecName: Full=Ribonuclease HII; Short=RNase HII gi|124363844|gb|ABN07652.1| RNase HII [Methanocorpusculum labreanum Z] Length = 212 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 23/202 (11%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIISI 83 + G+DE G+G + GP++ A +++ GI DSKK+S KKRE L+E+IT S Sbjct: 3 ICGVDEAGKGPVLGPMITAGVLVSDMSELEMLGIKDSKKLSPKKRESLFEEITFSWKTYT 62 Query: 84 SSASHQYID-----------KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 + ID + + + + Sbjct: 63 VVRTPFDIDSREGTMNAFTASCHADVVRALCADFVYLDACDVNAKRFGENVLRLSGSSAH 122 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK 191 + K D+ + AASI+AKVTRDR + ++Y + G GYP+ + E Sbjct: 123 VCSEHKADAKYAVVGAASIVAKVTRDRCIADLKEEYGEIG----SGYPSDPATISFLTEY 178 Query: 192 -----GPSCIHRLTFRPLRNLS 208 R +++ ++++ Sbjct: 179 IRTRGEVPLCARRSWQTVQDIL 200 >gi|34395818|sp|Q97CG6|RNH2_THEVO RecName: Full=Ribonuclease HII; Short=RNase HII Length = 212 Score = 99.7 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 24/199 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V++ + G+ DSK +S K+RE L++KIT + S Sbjct: 7 CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 66 Query: 86 ASHQYIDKHNIHKATL----------DAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 S + ++K ++ + + + + I E + Sbjct: 67 VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 126 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE---K 191 K DSI +++AASI++KV RDR + +KY +G GYP+ + +++ + Sbjct: 127 KHKADSIYPAVSAASIVSKVIRDREIDKIAEKYGFFG----SGYPSDPRTIDFLRKAMQQ 182 Query: 192 G-----PSCIHRLTFRPLR 205 G + IH T++ ++ Sbjct: 183 GLDLRSVARIHWETYKKIK 201 >gi|13540964|ref|NP_110652.1| ribonuclease HII [Thermoplasma volcanium GSS1] Length = 219 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 24/199 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V++ + G+ DSK +S K+RE L++KIT + S Sbjct: 14 CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 73 Query: 86 ASHQYIDKHNIHKATL----------DAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 S + ++K ++ + + + + I E + Sbjct: 74 VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 133 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE---K 191 K DSI +++AASI++KV RDR + +KY +G GYP+ + +++ + Sbjct: 134 KHKADSIYPAVSAASIVSKVIRDREIDKIAEKYGFFG----SGYPSDPRTIDFLRKAMQQ 189 Query: 192 G-----PSCIHRLTFRPLR 205 G + IH T++ ++ Sbjct: 190 GLDLRSVARIHWETYKKIK 208 >gi|325960150|ref|YP_004291616.1| ribonuclease Hii [Methanobacterium sp. AL-21] gi|325331582|gb|ADZ10644.1| ribonuclease HII [Methanobacterium sp. AL-21] Length = 204 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 25/205 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG++ GP+VV + ++ + + DSKK++ K+R LY KI A Sbjct: 3 IVGIDEAGRGSVLGPLVVCGVSIEEERLKYLERLKLKDSKKVTPKRRIVLYRKIKKIADC 62 Query: 82 S-------------ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + I+K I + + + + Sbjct: 63 HPVHISAADIDLLRSKDVNLNEIEKIAIKQIIGNCDPDISYIDCIDVKPERFTNEIENFQ 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQV 187 + A D ++AASI+AKV RD+ + K++ + G GYP+ K Sbjct: 123 ENLKVVAEHGADDTYPIVSAASIVAKVERDQEISRLKKEFGEIG----SGYPSDPKTVAY 178 Query: 188 IKE---KGPSCIHRLTFRPLRNLSV 209 +K K R ++ + + + Sbjct: 179 LKATPYKELPIFVRRSWSTVEKMRL 203 >gi|14324349|dbj|BAB59277.1| ribonuclease HII [Thermoplasma volcanium GSS1] Length = 218 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 24/199 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISISS 85 GIDE GRG + GP+V++ + G+ DSK +S K+RE L++KIT + S Sbjct: 13 CGIDEAGRGPVIGPMVISIVCCKEEYLREIGVKDSKMLSRKRREYLFDKITKNCAYSYVV 72 Query: 86 ASHQYIDKHNIHKATL----------DAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 S + ++K ++ + + + + I E + Sbjct: 73 VSPETLNKDMASESLNKIEENYILELLSKAEGIVYIDCFDVIEERAEKYIREKSGKEVVC 132 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE---K 191 K DSI +++AASI++KV RDR + +KY +G GYP+ + +++ + Sbjct: 133 KHKADSIYPAVSAASIVSKVIRDREIDKIAEKYGFFG----SGYPSDPRTIDFLRKAMQQ 188 Query: 192 G-----PSCIHRLTFRPLR 205 G + IH T++ ++ Sbjct: 189 GLDLRSVARIHWETYKKIK 207 >gi|257076035|ref|ZP_05570396.1| ribonuclease HII [Ferroplasma acidarmanus fer1] Length = 205 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 26/202 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN---IPFGINDSKKISHKKREELYEKI--TSSAII 81 GIDE GRG L GP+V+A IL + G+ DSKK+S +RE L+ ++ + Sbjct: 4 CGIDEAGRGPLIGPMVMA--ILCGDRESLEIIGVADSKKLSPGRRESLFARLQSYKYNFV 61 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI---------PEDLPCQ 132 IS + +H + + + + +D + E+ Q Sbjct: 62 IISPSEIDRYVEHQKLNVLEETYASKLASWAPASSTVYVDSFDVNELRLQSLLMENTKRQ 121 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK-- 189 K D I ++AASIIAKV RDR + HK Y D+G GYP+ + +K Sbjct: 122 IVCRHKADEIYPCVSAASIIAKVIRDREIDKLHKDYGDFG----SGYPSDPRTINFVKNA 177 Query: 190 -EKGPS--CIHRLTFRPLRNLS 208 + G + I R ++ +++ Sbjct: 178 LKNGINIDSIVRHQWKTYKSML 199 >gi|296233041|ref|XP_002761859.1| PREDICTED: ribonuclease H2 subunit A-like [Callithrix jacchus] Length = 278 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 20/199 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAII 81 V G+DE GRG + GP+V A + + DSK +S +RE L K+ Sbjct: 30 VVGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERERLLGKMQEDGNF 89 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + + + ++ V + + R + K D+ Sbjct: 90 VGWALDVLSPNLISTSMLGRFSLSRKVVFVDTVGMPETYQKRLQQSFPGIEVTVKAKADA 149 Query: 142 ISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK--- 191 + ++AASI AKV RD + + DYG GYP K + +KE Sbjct: 150 LYPVVSAASICAKVARDQAVKNWQFVEKLQDLDTDYG----SGYPNDPKTKVWLKEHVEP 205 Query: 192 --GPSCIHRLTFRPLRNLS 208 G R ++R + + Sbjct: 206 VFGFPQFVRFSWRTAQTIL 224 >gi|292656107|ref|YP_003536004.1| ribonuclease H II [Haloferax volcanii DS2] gi|291372875|gb|ADE05102.1| ribonuclease H II [Haloferax volcanii DS2] Length = 215 Score = 98.9 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 28/205 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE G+G + GP+V AA+ DP+ +P GI DSK+++ ++REEL ++ IS+ A Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGDPDALPDGIADSKRLAPERREELAAELRERDDISVGVA 62 Query: 87 S--------HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ------ 132 + +A ++A + + A S + Sbjct: 63 FVEPETIDDPETDMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRFGRRVREGLAEAG 122 Query: 133 ----AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH---- 184 A + D + AASI+AKV RDR + +Y + G GYP+ Sbjct: 123 VSVAVRAQHRADDEHAIVGAASIVAKVERDRRVEAIADEYGEVG----SGYPSDGTTREF 178 Query: 185 -QQVIKEKGP-SCIHRLTFRPLRNL 207 ++ +++ G R ++ +L Sbjct: 179 LREYVRDHGILPDCARKSWSTCADL 203 >gi|183221052|ref|YP_001839048.1| putative ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779474|gb|ABZ97772.1| Putative ribonuclease H [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 154 Score = 98.9 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 32/67 (47%), Positives = 44/67 (65%) Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++ KGD + SI+AASI+AK RD M KYP YGF H GY T +H++ +++ G S Sbjct: 72 SIPKGDDLVPSISAASILAKTYRDEYMEKMDAKYPGYGFAKHKGYGTEEHREALRKLGIS 131 Query: 195 CIHRLTF 201 IHRL+F Sbjct: 132 PIHRLSF 138 >gi|330835291|ref|YP_004410019.1| ribonuclease HII [Metallosphaera cuprina Ar-4] gi|329567430|gb|AEB95535.1| ribonuclease HII [Metallosphaera cuprina Ar-4] Length = 208 Score = 98.9 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 23/198 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI-IS 82 GIDE GRG L GP++VA I+LD G+ DSK+++ K+REEL+ I + I+ Sbjct: 4 GIDEAGRGCLIGPMIVAGIVLDEKGREELKELGVKDSKRLTRKRREELFNAIIERSKGIA 63 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-------- 134 ++ A ID +N++ T + + +L + + + E + Sbjct: 64 VAKAEPLEIDSNNLNALTYRKVSEIISSLSWLNPKIVTVDKVGKETEVIELIERLGFVAN 123 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK-- 191 V K D + + ++ASIIAKV RD ++ KY D+G GYP+ K + +K+ Sbjct: 124 VVHKADELFIEASSASIIAKVIRDNIIERLKLKYGDFG----SGYPSDPKTIRWVKDLVS 179 Query: 192 ---GPSCIHRLTFRPLRN 206 P I R +++ L+ Sbjct: 180 KGEEPPNIIRKSWKLLQK 197 >gi|169806222|ref|XP_001827856.1| ribonuclease HII [Enterocytozoon bieneusi H348] gi|161779304|gb|EDQ31327.1| ribonuclease HII [Enterocytozoon bieneusi H348] Length = 252 Score = 98.5 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 81/221 (36%), Gaps = 36/221 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAA-IILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 + GIDE GRG + GP+V AA ++ DSK+++ R+ Y + + A I Sbjct: 13 EVIVGIDEAGRGPVIGPMVYAAYVMHTNERRIRQFIDSKQLTPNTRKNYYATMMNFAYIV 72 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVE--------NLQVIPRSALIDGRSIPEDLPCQAF 134 I ++I A V+ V G QA Sbjct: 73 IEPIYITTYMNNHIKNLNQIAEEAVVQLLNEINNKCKNVKMVYIDALGNVSNYKKNLQAH 132 Query: 135 AVIK------GDSISLSIAAASIIAKVTRDRLM----RIAHKKYP---DY-------GFD 174 D+ ++AASI+AK+ RD H+ Y Y F+ Sbjct: 133 FKFNFTIEAKADATYEVVSAASIVAKINRDAFFSSKTNNIHENYYTKLGYEELTSIKDFN 192 Query: 175 S-HVGYPTAKH-QQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP+ H QQ +K+ G + I R ++ +++L Sbjct: 193 HCGSGYPSDPHTQQWLKDNFHPISGFNSIVRHSWSTIQSLL 233 >gi|288931994|ref|YP_003436054.1| ribonuclease HII [Ferroglobus placidus DSM 10642] gi|288894242|gb|ADC65779.1| ribonuclease HII [Ferroglobus placidus DSM 10642] Length = 211 Score = 98.5 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 23/201 (11%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 +AGIDE G+G + GP+VV + + + G+ DSK++S +KR+EL EK+ Sbjct: 3 IAGIDEAGKGPVIGPLVVCGVSCEEKDVEALKKLGVKDSKRLSPEKRKELAEKLKEIVEH 62 Query: 82 SISSASHQYIDKHNIH--KATLDAIYHAVENLQVIPRSALIDGRSIPEDL--------PC 131 S + ++ + ++ P +D + + Sbjct: 63 ETIVISPEELNSKMEKTTINEILKEACVEIISKLNPDVVFVDSFDVKPERLEEELKRLTG 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKE 190 + + + +AAASIIAK RD ++ ++Y D+G GY + K ++ ++E Sbjct: 123 KKVVAMHEGEREVVVAAASIIAKCLRDEIIEELKREYGDFG----SGYASDEKTRRWLEE 178 Query: 191 K---G-PSCIHRLTFRPLRNL 207 + G I R ++ + NL Sbjct: 179 QIKRGKIPEIVRKRWKTVENL 199 >gi|281202692|gb|EFA76894.1| hypothetical protein PPL_09646 [Polysphondylium pallidum PN500] Length = 1257 Score = 98.5 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 89/246 (36%), Gaps = 48/246 (19%) Query: 3 CNSIPERPHFELEAMVREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNN----IPFGI 57 + P+ P + ++ + + V GIDE GRG + GP+V AA + N Sbjct: 971 NETAPDIPLY-MDMELDKSEYGVVTMGIDEAGRGPVLGPLVYAACYVPDCNLERMRKLRF 1029 Query: 58 NDSKKISHKKREELYEKITSSAI---------------ISISSASHQYIDKHNIHKATLD 102 +DSKK++ +RE L++ I + + S +D + A Sbjct: 1030 DDSKKLTEAQRETLFKTILGNYELLGFVSDVNEPSMLSEKMLSKQQVSLDSISHGSAFNL 1089 Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPC--------QAFAVIKGDSISLSIAAASIIAK 154 + + G + K DS+ ++AASI AK Sbjct: 1090 IQQVLDKGYNIESLYVDTVGPPAKYEAKIRVAFPSIKNVVVSKKADSLYPIVSAASICAK 1149 Query: 155 VTRDRLMRIAHKKYPDYG---------FDSH--VGYPT-AKHQQVIKE-----KGPSCIH 197 V RDR+++ + YG +++ GYP+ + ++ G I Sbjct: 1150 VIRDRIIKATD--FEKYGSNASGQNAPINTNIGSGYPSDPATKSWLRNNRDKVFGYPDIV 1207 Query: 198 RLTFRP 203 R +++ Sbjct: 1208 RFSWKT 1213 >gi|19173027|ref|NP_597578.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi GB-M1] gi|19168694|emb|CAD26213.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi GB-M1] Length = 239 Score = 98.5 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 32/210 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSS-AII 81 V GIDE GRG + G +V A+++ + G DSK ++ +R ++ I Sbjct: 17 EVVVGIDEAGRGPVVGYMVYGALVVPRGVLEDVGFKDSKVLTPAQRYNFFQMIKKKGFGY 76 Query: 82 SISSASHQYIDKHNIHKATLDAI-------------YHAVENLQVIPRSALIDGRSIP-- 126 + + YI + ++ + I AL D R Sbjct: 77 AYHCSHPDYITEMMQVRSVSLNEVSIGSVLRILDEVQSKCRRVDTIYVDALGDCRKYKER 136 Query: 127 --EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AK 183 +D P + + DS ++ ASI+AKV RD L+ ++G D GYP+ + Sbjct: 137 LEKDYPYRFVVEERADSKFQVVSGASIVAKVQRDMLIS-------EFGEDLGSGYPSDPE 189 Query: 184 HQQVIKE-----KGPSCIHRLTFRPLRNLS 208 + +++ G R ++ ++ + Sbjct: 190 TIRWLRKNINVVFGFPPGVRYSWATVKKML 219 >gi|156101113|ref|XP_001616250.1| ribonuclease H1 large subunit [Plasmodium vivax SaI-1] gi|148805124|gb|EDL46523.1| ribonuclease H1 large subunit , putative [Plasmodium vivax] Length = 288 Score = 98.5 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 81/226 (35%), Gaps = 35/226 (15%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72 + + V GIDE GRG + GP+V A + + I+DSKKIS RE ++ Sbjct: 9 LYKFGDEEVRLGIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMF 68 Query: 73 EKITSSA---IISISSASHQYIDKHN-------------------IHKATLDAIYHAVEN 110 K+ +S+ I Q I I Sbjct: 69 HKLNNSSLPFGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIIDHVISRGCNLTEVF 128 Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + + + ++ + + + K DS+ ++AASI AKVTRD L++ + P Sbjct: 129 VDTVGKPSVYEEKLKRLFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEPL 188 Query: 171 YGFDS--HVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 D GY + +K G I R ++ N+ Sbjct: 189 VNIDKGFGSGYPGDPITKNFLKNNFDTVFGFPSIVRFSWSTADNML 234 >gi|261402294|ref|YP_003246518.1| ribonuclease HII [Methanocaldococcus vulcanius M7] gi|261369287|gb|ACX72036.1| ribonuclease HII [Methanocaldococcus vulcanius M7] Length = 233 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 79/222 (35%), Gaps = 42/222 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKR------------ 68 + G+DE GRG + GP+VV A ++ + G+ DSK +S KR Sbjct: 4 IIVGVDEAGRGPVLGPMVVCAFAIEKDREDLLRDLGVKDSKLLSKSKRSQLKKQLERIGY 63 Query: 69 ----------------EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ 112 + +I +A + ++ + + Sbjct: 64 VKKKILTANEINTLMNKINLNEIEINAFSEVIMGLINDLNLKDEYLEIYVDACSTNAKKF 123 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 I ++L + A K D +++ASIIAK RD ++ KKY + G Sbjct: 124 ENELKNRIKDIENQKNLKIKVIAEHKADLKYPIVSSASIIAKADRDEIIEQYKKKYGEIG 183 Query: 173 FDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP+ K + +++ I R+ ++ + + Sbjct: 184 ----SGYPSDPKTIKFLEKYFEEYGSLPNIARVHWKTCKRIL 221 >gi|213029071|ref|ZP_03343518.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 109 Score = 98.1 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 52/89 (58%) Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 ++ + +LP + AV+KGDS I+AASI+AKVTRD M +P YGF H Sbjct: 15 YVLIDGNRCPELPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFAQHK 74 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 GYPTA H + + + G + HR +F P++ Sbjct: 75 GYPTAFHLEKLAQYGATAHHRRSFAPVKR 103 >gi|148643039|ref|YP_001273552.1| ribonuclease HII [Methanobrevibacter smithii ATCC 35061] gi|222445276|ref|ZP_03607791.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii DSM 2375] gi|261350165|ref|ZP_05975582.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374] gi|189043626|sp|A5ULV6|RNH2_METS3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|148552056|gb|ABQ87184.1| ribonuclease HII, RnhB [Methanobrevibacter smithii ATCC 35061] gi|222434841|gb|EEE42006.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii DSM 2375] gi|288860951|gb|EFC93249.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374] Length = 207 Score = 98.1 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 21/202 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG++ GP+V+A +I+ G+ DSK+++ +R L K+ Sbjct: 3 VLGIDEAGRGSVLGPLVIAGVIVPEKMDIVLERMGVKDSKRLTPNRRTILSRKLKKMFEY 62 Query: 82 --------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP----EDL 129 I + I+ + I + ++ I + + I + I D Sbjct: 63 DLVVISAQDIDNMRADGINLNEIERIGMEKILSNLNPEKAIVDAVDIKAERFQNKLANDT 122 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188 A K D + ++AASIIAK RD + +K Y G GYP+ ++ + Sbjct: 123 GVNVVAEHKADDNYIEVSAASIIAKQERDAHIAEINKDYIKMG-GIGSGYPSDPITKKFL 181 Query: 189 KEKGP---SCIHRLTFRPLRNL 207 R ++ + + Sbjct: 182 TNFTYDEMPDFVRKSWATVEKM 203 >gi|150401039|ref|YP_001324805.1| ribonuclease HII [Methanococcus aeolicus Nankai-3] gi|189043622|sp|A6UUM1|RNH2_META3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|150013742|gb|ABR56193.1| ribonuclease HII [Methanococcus aeolicus Nankai-3] Length = 277 Score = 98.1 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 85/234 (36%), Gaps = 49/234 (20%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI 75 N + G+DE GRG + GP+V+A + + N I DSKK S +REEL+E I Sbjct: 16 NDNNKLIIGLDEAGRGPVLGPMVIALVKIKGQDLKNFEKLDIKDSKKHSKNRREELFEMI 75 Query: 76 TSSAIISISSASHQYIDKHNIHKA-----------------------------------T 100 ++ + + IDK Sbjct: 76 INNYDVRYEILEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQTATPQ 135 Query: 101 LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 ++ A + + + + + ++ + A K D ++AASIIAKV RDR Sbjct: 136 IEIYIDACSSNEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKVIRDRK 195 Query: 161 MRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 + K Y + G GYP+ Q+ + I R ++ + L Sbjct: 196 IEEYKKIYGEIG----SGYPSDKITQKYLANYVEKNRELPEIARKSWNTSKKLL 245 >gi|221057860|ref|XP_002261438.1| ribonuclease H1 large subunit [Plasmodium knowlesi strain H] gi|194247443|emb|CAQ40843.1| ribonuclease H1 large subunit, putative [Plasmodium knowlesi strain H] Length = 288 Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 81/226 (35%), Gaps = 35/226 (15%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72 + + V GIDE GRG + GP+V A + + I+DSKKIS RE ++ Sbjct: 9 LYKFGDEEVRLGIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMF 68 Query: 73 EKITSS---AIISISSASHQYI------------DKHNIHKATLDAIYHAVENLQVIPRS 117 K+ +S I Q I ++ + A + + Sbjct: 69 HKLNNSKLPFGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIINHVISRGCNLTEVF 128 Query: 118 ALIDGRSIPE-------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 G++ + K DS+ ++AASI AKVTRD L++ + P Sbjct: 129 VDTVGKANVYEEKLTKLFPHIKCTVREKADSLYPVVSAASICAKVTRDFLIKKWKYEEPL 188 Query: 171 YGFDS--HVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 D GY + +K G I R ++ N+ Sbjct: 189 VNIDKGFGSGYPGDPITKNFLKNNFDSVFGFPSIVRFSWSTADNML 234 >gi|15899137|ref|NP_343742.1| ribonuclease HII [Sulfolobus solfataricus P2] gi|284173748|ref|ZP_06387717.1| ribonuclease HII [Sulfolobus solfataricus 98/2] gi|74539626|sp|Q97W56|RNH2_SULSO RecName: Full=Ribonuclease HII; Short=RNase HII gi|13815686|gb|AAK42532.1| Ribonuclease HII (rnhB) [Sulfolobus solfataricus P2] gi|261600886|gb|ACX90489.1| ribonuclease HII [Sulfolobus solfataricus 98/2] Length = 212 Score = 97.8 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 23/199 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81 GIDE GRGAL GP++VA +++ + F G+ DSK+++ ++RE+L++ + ++ Sbjct: 3 VGIDEAGRGALIGPMIVAGVVISDTKLKFLKGIGVKDSKQLTRERREKLFDIVANTVEAF 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV----- 136 ++ ID +N++ T DA+ + +L + + E + Sbjct: 63 TVVKVFPYEIDNYNLNDLTYDAVSKIILSLSSFNPEIVTVDKVGDEKPVIELINKLGYKS 122 Query: 137 ---IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 K D + + +AASIIAKV RD + + Y D+G GYP + + +K Sbjct: 123 NVVHKADVLFVEASAASIIAKVIRDNYIDELKQVYGDFG----SGYPADPRTIKWLKSFY 178 Query: 192 ----GPSCIHRLTFRPLRN 206 P I R +++ LR+ Sbjct: 179 EKNPNPPPIIRRSWKILRS 197 >gi|221132373|ref|XP_002166509.1| PREDICTED: similar to ribonuclease H2, large subunit [Hydra magnipapillata] Length = 300 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 73/219 (33%), Gaps = 44/219 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V + G DSK ++ +KR+ L I ++ Sbjct: 32 GIDEAGRGPVLGPMVYSVCYCPISMIKKLSDLGFADSKTLTEEKRDNLLSVIENNCDFIG 91 Query: 81 ISISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSA-------LID 121 +I S I A + Sbjct: 92 WAIKIISPTEISNEMLRRYKVTLNEISHGAAIELTRKTINAGANITEMYVDTVGDALKYQ 151 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD------YGFDS 175 + K D++ ++AASI AKV RDR ++ ++P+ YG Sbjct: 152 NKLSEVFDGISVKVTPKADALFPIVSAASICAKVARDRCIQNW--QFPEGDIKEDYG--- 206 Query: 176 HVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP K +Q +K+ G R ++ N+ Sbjct: 207 -SGYPADPKTKQWLKDVVDPVFGFPQFVRFSWSTCANIL 244 >gi|269977901|ref|ZP_06184855.1| ribonuclease HII [Mobiluncus mulieris 28-1] gi|269933867|gb|EEZ90447.1| ribonuclease HII [Mobiluncus mulieris 28-1] Length = 278 Score = 97.0 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 85/277 (30%), Gaps = 86/277 (31%) Query: 10 PHFELEAMVR-------------------EKNMWPVAGIDEVGRGALAGP------VVVA 44 P E+ + V G+DEVGRGALAGP VV A Sbjct: 2 PDLSWESAALGGVNGCAVSGDYFAASGGTAAPVTLVGGMDEVGRGALAGPVCIGVTVVSA 61 Query: 45 ---AIILDP-----------------------------------NNIPFGINDSKKISHK 66 A P GI + +++ Sbjct: 62 TELAAGFPPGLNDSKALTARRREALVQPIQSWVKDFAIGEATNMEIDEMGIMAAMRLAGW 121 Query: 67 K-------REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 + R L +K+ + A HQ A + A Sbjct: 122 RALNQLDARGHLPQKLLLDGNVDYLQAEHQANLFDAQWHLMNPAQPAQPAQPAQPAQPAQ 181 Query: 120 IDGRSIPEDLPC--------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 + P + ++K D + ++A A+++AKV RD M Sbjct: 182 PAQPAQPAQPAMGTTPAHNPPPAPLLKVQTLVKADQHAATVAGAAVLAKVYRDAFMSRL- 240 Query: 166 KKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + P YG+ +VGY T H++ I GPS HR T++ Sbjct: 241 -EDPGYGWSHNVGYGTKAHREAISRLGPSRWHRHTWK 276 >gi|254167831|ref|ZP_04874680.1| ribonuclease HII [Aciduliprofundum boonei T469] gi|289596631|ref|YP_003483327.1| ribonuclease HII [Aciduliprofundum boonei T469] gi|197623122|gb|EDY35688.1| ribonuclease HII [Aciduliprofundum boonei T469] gi|289534418|gb|ADD08765.1| ribonuclease HII [Aciduliprofundum boonei T469] Length = 212 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 25/201 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISI-- 83 G+DE GRG + GP+VVA + + + I + DSKK+S K+RE L E+I A + Sbjct: 3 CGVDEAGRGPVIGPLVVAGVCGEESKIASLRVKDSKKLSPKRRERLAEEIKKVASKIVVI 62 Query: 84 ------------SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ + + + + + Sbjct: 63 KIEPEEIDALREKMTLNEIEVELFARVISQLNGDKVYVDAADVNEDRFAEEIKKKLGKDV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQ- 186 + + K DS ++AASIIAKV RDR++ K+ ++G GYP T + + Sbjct: 123 EIISEHKADSKYPMVSAASIIAKVERDRIINELKKELGEFG----SGYPADERTKRFLEK 178 Query: 187 VIKEK-GPSCIHRLTFRPLRN 206 +KE R +++ + Sbjct: 179 YVKEHNELPPHTRHSWKSAKR 199 >gi|146303444|ref|YP_001190760.1| ribonuclease HII [Metallosphaera sedula DSM 5348] gi|145701694|gb|ABP94836.1| RNase HII [Metallosphaera sedula DSM 5348] Length = 208 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 23/195 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI-I 81 GIDE GRG L GP+VV + L+ +I G+ DSKK++ KKREEL++ I S + + Sbjct: 3 IGIDEAGRGCLIGPMVVVGVALNERSIVALKQSGVKDSKKLTRKKREELFDLILSESEGV 62 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF------- 134 +++ A + ID +N++ T + ++ L + + + E +A Sbjct: 63 AVAKALPEEIDNNNLNSLTYTKVIEIIDALSWLNPEVVTVDKVGKEIEVIRAIEDLGFKP 122 Query: 135 -AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK- 191 V K D + + ++ASI+AKV RDRL+ K++ D+G GYP+ K Q + + Sbjct: 123 NVVHKADELFVEASSASIVAKVIRDRLIESLKKEFGDFG----SGYPSDRKTVQWVLDLV 178 Query: 192 ----GPSCIHRLTFR 202 P I R +++ Sbjct: 179 SRGEEPPNIIRRSWK 193 >gi|218887966|ref|YP_002437287.1| ribonuclease H [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758920|gb|ACL09819.1| Ribonuclease H [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 292 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 33/73 (45%), Positives = 46/73 (63%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 AV+ GD++ +++AASI+AK RD+LM +++P YG H GY TA+H I E G Sbjct: 209 QRAVVGGDALVPAVSAASILAKTFRDQLMTALDRRFPHYGLAVHKGYGTAEHMAAIAEHG 268 Query: 193 PSCIHRLTFRPLR 205 P HR TFR +R Sbjct: 269 PCPQHRATFRGVR 281 Score = 84.7 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 23/126 (18%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-------- 52 + N P P P GIDE GRG LAGPVV AA+IL P+ Sbjct: 5 LLANLAPPHPS------------TPYVGIDEAGRGCLAGPVVAAAVILPPHADAATLADL 52 Query: 53 --IPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVE 109 G+ DSKK++ KRE L +I A+ + + I++ NI +AT A++ AV Sbjct: 53 LPDLAGLTDSKKLTAAKREALAPRIRQHAVAWGLGVVWPRDIERINILQATFHAMWRAVR 112 Query: 110 NLQVIP 115 L+ Sbjct: 113 FLRPGH 118 >gi|321262130|ref|XP_003195784.1| ribonuclease HI large subunit [Cryptococcus gattii WM276] gi|317462258|gb|ADV23997.1| Ribonuclease HI large subunit, putative [Cryptococcus gattii WM276] Length = 260 Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 81/213 (38%), Gaps = 33/213 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + GIDE GRG + GP+V AA + P G +DSK +S + R+ L+E + Sbjct: 36 GWIMGIDEAGRGPVLGPMVYAAAYCPLSFKPTLESIGFDDSKALSAETRQRLWETFEVHS 95 Query: 80 --IISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSA 118 S S+ S Q I I A I + + + Sbjct: 96 PLCYSSSTLSPQDISSSMLRKVPINLNRQAEDSTVGLIQAALNRGINVTECYVDALGPAP 155 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 R + K DS+ + AASI+AKVTRDR + + + G Sbjct: 156 QWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVHGWSEDEEE--VIRGSG 213 Query: 179 YPT-AKHQQVIKE-----KGPSCIHRLTFRPLR 205 YP+ K Q +K+ G I R ++ ++ Sbjct: 214 YPSDPKTQAYLKKSIDPVFGYKGIVRFSWATIK 246 >gi|171184725|ref|YP_001793644.1| ribonuclease HII [Thermoproteus neutrophilus V24Sta] gi|254807995|sp|B1YB67|RNH2_THENV RecName: Full=Ribonuclease HII; Short=RNase HII gi|170933937|gb|ACB39198.1| ribonuclease HII [Thermoproteus neutrophilus V24Sta] Length = 198 Score = 95.8 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 20/193 (10%) Query: 28 GIDEVGRGALAGPVVVAAIILDPN-NIPFGINDSKKISHKKREELYEKITSSAII----S 82 G+DE GRG + GP+V+A ++ D G+ DSK++S ++RE LY+ I +A Sbjct: 7 GVDEAGRGPVVGPMVIAVVVGDGGVLARLGVRDSKRLSPERRERLYQLILEAADCVNYVV 66 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID-------GRSIPEDLPCQAFA 135 + A + A + L + S E + + Sbjct: 67 VEPAVVDTYVWRGLLNALELDYTAKLIELCPADVYYVDSPDVDPRRYGSALEFITGRRVV 126 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKG-- 192 + +AAASI+AKV RDRL+ + K+ D+G GYP+ + ++ +K G Sbjct: 127 AMHKGESVPQVAAASIVAKVVRDRLVALLKKEVGDFG----SGYPSDPRTREWLK-WGRL 181 Query: 193 PSCIHRLTFRPLR 205 P R ++R LR Sbjct: 182 PPECVRWSWRTLR 194 >gi|209877739|ref|XP_002140311.1| ribonuclease HI large subunit [Cryptosporidium muris RN66] gi|209555917|gb|EEA05962.1| ribonuclease HI large subunit, putative [Cryptosporidium muris RN66] Length = 286 Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 76/236 (32%), Gaps = 44/236 (18%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70 E + + GIDE GRG + GP+V A N I+DSKK++ RE+ Sbjct: 10 ENICLFNKRPVILGIDEAGRGPVLGPMVFACFYYPTENEKLLKLMNIDDSKKLTENSREK 69 Query: 71 LYEKITSS---AIISISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIP 115 + + I ++ I QY+ A + V Sbjct: 70 INKDIRNNKNQFGWGIYILLPQYLSCQMLKKQKYNLNEISHTAAINLIKSVLQHGVNVTH 129 Query: 116 RSALIDGRSIPE-------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 G K DS+ ++ ASI+AKV RD + + Sbjct: 130 IYIDTVGPPESYKKKLKLLFPSINITVTPKADSLYPCVSGASILAKVERDHFLSNWWS-F 188 Query: 169 PD---YG--------FDSHVGYP----TAKHQQVI--KEKGPSCIHRLTFRPLRNL 207 P Y ++ GYP T + + I K G I R ++ + Sbjct: 189 PGHDRYDHNGNNLSIYEQGSGYPGDPKTKQFLKQIFHKVFGFPNIVRFSWSTADQI 244 >gi|49115760|gb|AAH73515.1| LOC443655 protein [Xenopus laevis] Length = 305 Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 83/253 (32%), Gaps = 55/253 (21%) Query: 7 PERPHFE-LEA-----MVREKNMWPVA-------GIDEVGRGALAGPVVVAAIILD---- 49 P RP E E + + + GIDE GRG + GP+V Sbjct: 1 PTRPELEEFERNNSQSRLLSSPVPQICRTEDCCLGIDEAGRGPVLGPMVYGICYCPVARK 60 Query: 50 PNNIPFGINDSKKISHKKREELYEKITSSAI---ISISSASHQYIDKHNIHKATLDAIYH 106 + + DSK +S RE L+EK+ S+ ++ S I +A + Sbjct: 61 KDLQDSKVADSKTLSEADRERLFEKLNGSSDYIGWALHILSPNIISTSMQQRAKYNLNAL 120 Query: 107 AVE-------------------NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 + + + + + + K DS+ ++ Sbjct: 121 SHDTAIGLIQFALDAGVQLTEVFVDTVGPAEKYQEKLKKIFPELDVTVRPKADSLFPVVS 180 Query: 148 AASIIAKVTRDR------LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK-----GPSC 195 AASI AKV RDR + + DYG GYP K ++ + G Sbjct: 181 AASICAKVARDRVVKDWKFVEDLGELDADYG----SGYPNDPKTKEWLSRHLDPVFGYPQ 236 Query: 196 IHRLTFRPLRNLS 208 R ++ + + Sbjct: 237 FVRFSWSTAQTIL 249 >gi|118355616|ref|XP_001011067.1| ribonuclease HII family protein [Tetrahymena thermophila] gi|89292834|gb|EAR90822.1| ribonuclease HII family protein [Tetrahymena thermophila SB210] Length = 284 Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 40/233 (17%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKR 68 E +KN+ V GIDE GRG + GP+V + P G NDSK+++ +KR Sbjct: 3 TFENK--KKNLDWVMGIDEAGRGPVLGPMVYGCCVWPIQYEPELKLEGFNDSKQLTEQKR 60 Query: 69 EELYEKI----TSSAIISISSASHQYIDKHN------------IHKATLDAIYHAVENLQ 112 ++LY ++ + S +++ + A + Sbjct: 61 DQLYARMEELKNDKLYFEVRILSAEFLSNRMLAKNRDSLNELSFNAAYSLIDSVMSQGFN 120 Query: 113 VIPRSALIDGR-----------SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 V G+ + K D+ + AASI AKVTRD + Sbjct: 121 VTQVFLDTVGKEETYQAKLYQDYKYTYPQLKFTVSSKADAKFPVVGAASICAKVTRDLQI 180 Query: 162 RIAHKKYP-DYGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 + P D + GYP+ ++ ++E G R ++ + N+ Sbjct: 181 TNNDMREPLDLSKATGSGYPSDPNTKKWLQEVFDPVFGFPSNVRYSWSTVDNI 233 >gi|255994295|ref|ZP_05427430.1| ribonuclease HII [Eubacterium saphenum ATCC 49989] gi|255993008|gb|EEU03097.1| ribonuclease HII [Eubacterium saphenum ATCC 49989] Length = 283 Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 35/70 (50%), Positives = 46/70 (65%) Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 ++I+GD S SIAA+SI+AKV RD +M+ A + YP Y F S+ GY T +H + IK Sbjct: 212 PVHSIIRGDEKSYSIAASSIVAKVIRDEMMKKADEMYPGYDFKSNKGYGTKRHYEGIKLY 271 Query: 192 GPSCIHRLTF 201 G S IHR TF Sbjct: 272 GISDIHRKTF 281 Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 2/101 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 + P AG+DEVGRG +AGPVV A + + ++ GI+DSKK++ R +L Sbjct: 18 LAFDKEYYIGGKIP-AGMDEVGRGPIAGPVVSACVCMKADSEILGIDDSKKVTKAGRIKL 76 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAVENL 111 ++KI A I I H ID+ NI AT A+ A+ ++ Sbjct: 77 FDKIIEDARAIGIGIVPHNIIDRINILNATKLAMRAALYDM 117 >gi|149004283|ref|ZP_01829060.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69] gi|147757777|gb|EDK64791.1| ribonuclease HII [Streptococcus pneumoniae SP14-BS69] Length = 134 Score = 95.1 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 37/56 (66%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKK 67 E + ++ + +AGIDEVGRG LAGPVV AA+IL N G+NDSKKI K+ Sbjct: 58 LSYEKELYKQGLTLIAGIDEVGRGPLAGPVVAAAVILPKNCKIKGLNDSKKIPKKE 113 >gi|219111921|ref|XP_002177712.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410597|gb|EEC50526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 393 Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 83/244 (34%), Gaps = 51/244 (20%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP---NNIPFGI 57 + + IP+ V GIDE GRG++ GP+V A +P + IP Sbjct: 97 LLISDIPDS---------CRNKQGVVVGIDEAGRGSILGPMVYGAAFWNPCDEDRIPNDF 147 Query: 58 NDSKKISHKKREELYEKITSSAIIS---------------ISSASHQYIDKHNIHKATLD 102 NDSK++S KR L KI + +++ + A Sbjct: 148 NDSKQLSEDKRAMLLHKIMYDTPEMGFAVRVLHASEISRNMLRTESYNLNQMSHDAAAGI 207 Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV-------IKGDSISLSIAAASIIAKV 155 + +Q+ G + Q K D+ +A S++AK Sbjct: 208 IEHLLEAGVQIGACFIDTVGNADHYKRRLQQEFPGIDFTVESKADAKYPPCSAGSVVAKN 267 Query: 156 TRDRLMRIAH------KKYPDYGFDSHVGYPT----AKHQQ---VIKEKGPSCIHRLTFR 202 RDR+M K+ P +G GYP+ + K G + R ++ Sbjct: 268 VRDRMMESFQYSEMSLKRDPKFG----SGYPSDPVCKDWMENNQNCKVFGYPDVVRFSWN 323 Query: 203 PLRN 206 P + Sbjct: 324 PAKK 327 >gi|118575753|ref|YP_875496.1| ribonuclease HII [Cenarchaeum symbiosum A] gi|189043576|sp|A0RV25|RNH2_CENSY RecName: Full=Ribonuclease HII; Short=RNase HII gi|118194274|gb|ABK77192.1| ribonuclease HII [Cenarchaeum symbiosum A] Length = 205 Score = 94.7 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 V G+DE GRG+L GP+V+A + + N + G+ DSKK++ K RE LY +I + A Sbjct: 2 LVCGVDEAGRGSLVGPLVIAGVAIKRNRMRELKSMGVRDSKKLTRKARESLYPEIVNMAD 61 Query: 81 -ISISSASH------QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ- 132 IS N +A A + + Sbjct: 62 SYHISRVPPGVVDRSVGRHMLNDLEARYMARVITRLGHGTTYVDSCDVNPRRFGGRVSEM 121 Query: 133 ----AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQV 187 + + D + ++AASI+AKV RDR + K + D GYP+ + Sbjct: 122 SGRTVRSYHRADDRFVIVSAASILAKVARDRSIERLRKSH-----DVGSGYPSDRRTVGF 176 Query: 188 IK----EKGP-SCIHRLTFRPLR 205 ++ + G R ++RP R Sbjct: 177 VRGYYNKNGAMPPFVRRSWRPAR 199 >gi|41614859|ref|NP_963357.1| hypothetical protein NEQ063 [Nanoarchaeum equitans Kin4-M] gi|74579762|sp|Q74MH3|RNH2_NANEQ RecName: Full=Ribonuclease HII; Short=RNase HII gi|40068583|gb|AAR38918.1| NEQ063 [Nanoarchaeum equitans Kin4-M] Length = 200 Score = 94.3 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 16/187 (8%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE GRG + GP+V+A +I D G+ DSK ++ ++REEL+ +I ++++ Sbjct: 5 GVDEAGRGPIIGPMVIALVIGDSGYLKELGVKDSKLLTKEQREELFNEIVKNSLVKYEIV 64 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV---------I 137 S ID++N+++ + + +++ +ID PE+ + Sbjct: 65 SPSLIDRYNLNELEAKVTANLINSIEDEISHIVIDSPERPENYKLRILKYLKKRVKIITK 124 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK--GPS 194 +AAASI+AKV RDR + + G D GYP+ + ++ +++ Sbjct: 125 NKGEEDPLVAAASIVAKVIRDREIEKIKE---QTGIDFGSGYPSDKRTRKALEQYYRILK 181 Query: 195 CIHRLTF 201 R + Sbjct: 182 PYIRKKW 188 >gi|254167925|ref|ZP_04874774.1| ribonuclease HII [Aciduliprofundum boonei T469] gi|197623216|gb|EDY35782.1| ribonuclease HII [Aciduliprofundum boonei T469] Length = 212 Score = 94.3 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 25/201 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISI-- 83 G+DE GRG + GP+VVA + + + I + DSKK+S K RE L E+I A + Sbjct: 3 CGVDEAGRGPVIGPLVVAGVCGEESKIASLRVKDSKKLSPKSRERLAEEIKKVASKIVVI 62 Query: 84 ------------SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ + + + + + Sbjct: 63 KIEPEEIDALRERMTLNEIEVELFARVISQLNGDKVYVDAADVNEDRFAEEIKKKLGKDV 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQ- 186 + + K DS ++AASIIAKV RDR++ ++ ++G GYP T + + Sbjct: 123 EIISEHKADSKYPMVSAASIIAKVERDRIIEELKEELGEFG----SGYPSDDRTKRFLEK 178 Query: 187 VIKEK-GPSCIHRLTFRPLRN 206 +KE R +++ + Sbjct: 179 YVKEHNELPPHTRHSWKSAKR 199 >gi|322372194|ref|ZP_08046735.1| ribonuclease HII [Haladaptatus paucihalophilus DX253] gi|320548203|gb|EFW89876.1| ribonuclease HII [Haladaptatus paucihalophilus DX253] Length = 212 Score = 94.3 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 26/201 (12%) Query: 28 GIDEVGRGALAGPVVVAAI-ILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE GRG + G + AA+ I DP+++P GI+DSK +S ++REEL + + +++ A Sbjct: 3 GVDEAGRGPVLGSMFAAAVAIDDPDDLPDGIDDSKNLSPERREELAAALRADEAVAVGVA 62 Query: 87 --------SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP-------EDLPC 131 + A +AI V + A S Sbjct: 63 EITTTRIDDPETDMNTLTVAAHGEAISRIVSGGERGIVDACDTSESRFARRVAAAVGPEI 122 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE 190 A D + AASI+AKV RD + +++ G GYP+ ++ ++E Sbjct: 123 TVEAEHGADETHAIVGAASIVAKVERDAHVARLAEQHGGVG----SGYPSDPNTREFLRE 178 Query: 191 K-----GPSCIHRLTFRPLRN 206 R +++ ++ Sbjct: 179 YVEAHGELPECARASWQTSKD 199 >gi|221122753|ref|XP_002163480.1| PREDICTED: similar to ribonuclease H2, large subunit [Hydra magnipapillata] Length = 339 Score = 94.3 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 74/219 (33%), Gaps = 44/219 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V + G DSK ++ +KR+ L I ++ Sbjct: 32 GIDEAGRGPVLGPMVYSVCYCPISMIKKLSDLGFADSKTLTEEKRDNLLSVIENNCDFIG 91 Query: 81 ISISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRS-------ALID 121 +I S I A + + Sbjct: 92 WAIKIISPTEISNEMLRRYKVTLNEISHGAAIELTRKTINAGANITEMYVDTVGDASKYQ 151 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD------YGFDS 175 + K D++ ++AASI AKV RDR ++ ++P+ YG Sbjct: 152 NKLSEVFDGVSVKVTPKADALFPIVSAASICAKVARDRCIQGW--QFPEGDIKEDYG--- 206 Query: 176 HVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP K +Q +K+ G R ++ N+ Sbjct: 207 -SGYPADPKTKQWLKDVVDPVFGFPQFVRFSWSTCVNIL 244 >gi|147920602|ref|YP_685601.1| ribonuclease H (RNase H) [uncultured methanogenic archaeon RC-I] gi|121688011|sp|Q0W5R8|RNH2_UNCMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|110620997|emb|CAJ36275.1| ribonuclease H (RNase H) [uncultured methanogenic archaeon RC-I] Length = 224 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 27/202 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + GIDE GRG + GP+VV II++ ++P G+ DSKK+S KKREE + + Sbjct: 9 IMGIDEAGRGPVIGPLVVCGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAAALKNKYKY 68 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVE--------------NLQVIPRSALIDGRSIPE 127 +S Q ID + L+ + + + Sbjct: 69 ELSVLPPQEIDARFESEDNLNRLEVNCFAGLIRSAKPTIAYLDACDVNAERFGINIKKCL 128 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ 186 D + + + DS ++AASIIAKV RD L+R +K G D GYP Sbjct: 129 DFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIREISEKM---GEDVGSGYPADPVTIS 185 Query: 187 VIKEK-----GPSCIHRLTFRP 203 +K R +++ Sbjct: 186 FLKNYYMKHKCLPDCARKSWKT 207 >gi|116284049|gb|AAH29252.1| Rnaseh2a protein [Mus musculus] Length = 254 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 73/221 (33%), Gaps = 42/221 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SS 78 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89 Query: 79 AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSAL 119 ++ S I I A + + + Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGF 173 R + K DS+ ++AASI AKV RD+ + DYG Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +++ G R ++ + + Sbjct: 209 ---SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAIL 246 >gi|58037175|ref|NP_081463.1| ribonuclease H2 subunit A [Mus musculus] gi|85541053|sp|Q9CWY8|RNH2A_MOUSE RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|312208159|pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key Interaction Interfaces Relevant To Enzyme Function And Human Disease gi|23273263|gb|AAH38158.1| Ribonuclease H2, large subunit [Mus musculus] gi|74138850|dbj|BAE27230.1| unnamed protein product [Mus musculus] Length = 301 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 73/221 (33%), Gaps = 42/221 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SS 78 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89 Query: 79 AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSAL 119 ++ S I I A + + + Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGF 173 R + K DS+ ++AASI AKV RD+ + DYG Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +++ G R ++ + + Sbjct: 209 ---SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAIL 246 >gi|12845627|dbj|BAB26828.1| unnamed protein product [Mus musculus] Length = 301 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 73/221 (33%), Gaps = 42/221 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SS 78 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89 Query: 79 AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSAL 119 ++ S I I A + + + Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDRNVNVTQVFVDTVGMPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGF 173 R + K DS+ ++AASI AKV RD+ + DYG Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +++ G R ++ + + Sbjct: 209 ---SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAIL 246 >gi|156938224|ref|YP_001436020.1| RNase HII [Ignicoccus hospitalis KIN4/I] gi|156567208|gb|ABU82613.1| RNase HII [Ignicoccus hospitalis KIN4/I] Length = 215 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 20/198 (10%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 VAGIDE GRG + G + VA + ++ + + G+ +SK ++ KR Y I +A Sbjct: 5 IVAGIDEAGRGPVIGSMFVALVAIEQDQLEKLVSLGLKESKMLTPNKRRYFYNLIMKTAK 64 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYH---------AVENLQVIPRSALIDGRSIPEDLP 130 + I + IDK N+ + T++ + ++ + V R ++ Sbjct: 65 LVLIKEVKAEEIDKRNLSELTIEVMKELLETALNKVKIDVVCVDIVGNGAKQRRALGEVF 124 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK 189 + KGD+ + AAASI+AK R+R + +Y D+G GYP+ K + + Sbjct: 125 PDVIVMKKGDASCPAAAAASIVAKEARERHVSQLRARYGDFG----SGYPSDPKTLRWLS 180 Query: 190 -EKGPSCIHRLTFRPLRN 206 + I R ++ +R Sbjct: 181 VTRPLPPIVRKKWKTIRR 198 >gi|123502031|ref|XP_001328204.1| ribonuclease HII family protein [Trichomonas vaginalis G3] gi|121911144|gb|EAY15981.1| ribonuclease HII family protein [Trichomonas vaginalis G3] Length = 269 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 31/218 (14%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKREELYEKIT--- 76 K + GIDE GRG GP+V + I P ++DSKK++ ++REE++++I Sbjct: 16 KGIELEMGIDEAGRGPALGPMVYSGAIAPNKYEWPKDVDDSKKLTAEQREEIFDEIKKLP 75 Query: 77 ------------SSAIISISSASHQYIDKHNIHKATLDAI-------YHAVENLQVIPRS 117 SA + ++ + H A + + + Sbjct: 76 VGFAVRVISAEEISAKQTALVNPPISLNTVSHHAARDLVQAFLDKGLNIKALYVDTVGIA 135 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS-- 175 + + K D+ + AASI AKVTRDRL+ + P Sbjct: 136 ESYQDWLQDKFPNIKVTVRAKADATYKVVGAASICAKVTRDRLLADFKFEEPGLEISHDW 195 Query: 176 HVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 GYP+ K ++ G + R ++P++ + Sbjct: 196 GSGYPSDPKTSNWLETNFDPVFGYPSVARFDWKPIKMM 233 >gi|58271424|ref|XP_572868.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|57229127|gb|AAW45561.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 260 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 80/215 (37%), Gaps = 33/215 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + GIDE GRG + GP+V AA + P G +DSK +S + R+ L+E Sbjct: 34 GEGWIMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFGV 93 Query: 78 SA--IISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPR 116 S S+ S Q I + I A I + + Sbjct: 94 HPPLCYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTECYVDALGP 153 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + R + K DS+ + AASI+AKVTRDR + + + Sbjct: 154 APQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVHGWSQDEEE--VIRG 211 Query: 177 VGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLR 205 GYP+ K Q +K G I R ++ ++ Sbjct: 212 SGYPSDPKTQAYLKGSIDPVFGYKGIVRFSWATVK 246 >gi|18312482|ref|NP_559149.1| ribonuclease HII [Pyrobaculum aerophilum str. IM2] gi|74564756|sp|Q8ZXL6|RNH2_PYRAE RecName: Full=Ribonuclease HII; Short=RNase HII gi|18159942|gb|AAL63331.1| ribonuclease HII (rnhB) [Pyrobaculum aerophilum str. IM2] Length = 212 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 20/195 (10%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF-GINDSKKISHKKREELYEKITSSA---- 79 + GIDE GRG + GP+V+A ++ + +++ G+ DSK++S RE +YEKI A Sbjct: 1 MIGGIDEAGRGPVIGPMVIAIVVGESDDMIKIGVRDSKRLSPGAREAVYEKILRVAACVN 60 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID-------GRSIPEDLPCQ 132 + I A + A + NL + S + Sbjct: 61 YVVIEPAEIDAYVSRGMLNALELKYTAQLINLCPAEYYYVDSPDVNPKRYESGLVFATGK 120 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK 191 + +AAASI+AKV RDRL+++ K+ D+G GYP+ + Q ++E Sbjct: 121 RVIALHKGEAVPQVAAASIVAKVVRDRLIQLLKKEVGDFG----SGYPSDPRTLQRLRE- 175 Query: 192 G--PSCIHRLTFRPL 204 G PS R ++ + Sbjct: 176 GRMPSECIRWQWKTV 190 >gi|126466172|ref|YP_001041281.1| RNase HII [Staphylothermus marinus F1] gi|126014995|gb|ABN70373.1| RNase HII [Staphylothermus marinus F1] Length = 244 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 31/207 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA-II 81 GIDE GRG L G +V+A ++++ + I G+ DSK+++ R + +KI A + Sbjct: 10 IGIDEAGRGPLIGDLVIAVLMINRDKIKNLISIGVRDSKQLTRHTRLIMAKKILKLADNV 69 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF------- 134 SI S + ID +NI+K + I A+ L I I E + + Sbjct: 70 SIIYISPEMIDSYNINKIIAEKIIIALRMLSQIINHYRTVSIYIDEIKGYKNYILTNLSK 129 Query: 135 ---------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184 D ++AASI+AK RD+ + K Y ++G GYP+ Sbjct: 130 YINNIEEYVMEPNADQKYPVVSAASILAKTIRDKNIDFLKKIYGNFG----SGYPSDKIT 185 Query: 185 QQVI-----KEKGPSCIHRLTFRPLRN 206 + + +E P I R T+ LR Sbjct: 186 IKWLTKTYNEENEPPLIIRRTWSTLRK 212 >gi|328774049|gb|EGF84086.1| hypothetical protein BATDEDRAFT_8789 [Batrachochytrium dendrobatidis JAM81] Length = 290 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 75/219 (34%), Gaps = 36/219 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAII-LDPNNIPF---GINDSKKISHKKR-------EELYEK 74 + G+DE GRG + GP+V A L + G DSK ++ +R E+ E Sbjct: 63 ILGVDEAGRGPVLGPMVYAVCYTLISHQDKLKDIGFADSKVLNETQRDKLFATIEKQSEW 122 Query: 75 ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ----------------VIPRSA 118 I +A + + + + + A + +Q V + Sbjct: 123 IGWAATVCSPQDISESMLRRAKYNLNALAHDTTINLIQSVLDQGVNIQEVYVDTVGSPES 182 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---DS 175 + + K DS+ ++AASI AKVTRD ++ P Sbjct: 183 YQAKLAKRFPKIGKIVVSKKADSLFPIVSAASICAKVTRDAILCNWEFVEPGIDSTQRAF 242 Query: 176 HVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K +K+ G I R ++ L Sbjct: 243 GSGYPADPKTVAWLKKHLDPVFGFPRIVRFSWSTTAKLL 281 >gi|124027720|ref|YP_001013040.1| ribonuclease HII [Hyperthermus butylicus DSM 5456] gi|189043606|sp|A2BL34|RNH2_HYPBU RecName: Full=Ribonuclease HII; Short=RNase HII gi|123978414|gb|ABM80695.1| ribonuclease HII [Hyperthermus butylicus DSM 5456] Length = 240 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 79/212 (37%), Gaps = 27/212 (12%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI 75 + GIDE GRG + GP+VV + + N+I G+ DSK+++ R +LY +I Sbjct: 3 RRRCRYAIGIDEAGRGPVIGPMVVVGVAVCSNDIDKLVALGVRDSKQLTPVVRAKLYGEI 62 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ--- 132 A+ S+ + + + + + P + Sbjct: 63 LRVALHSVIVKLPPALLDAVNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEKLAA 122 Query: 133 ---------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-A 182 A D ++AASI+AKV RD +R+ + Y GYPT Sbjct: 123 RLSGRLGVRVIAEPGADKTYPIVSAASIVAKVVRDAEIRMLRRLYGV----RGSGYPTDP 178 Query: 183 KHQQVIKEK------GPSCIHRLTFRPLRNLS 208 + + E+ P R T+ L+ ++ Sbjct: 179 ETIAWLAEEYRRNPANPPWFVRRTWSTLKRIA 210 >gi|61557385|ref|NP_001013252.1| ribonuclease H2 subunit A [Rattus norvegicus] gi|81889649|sp|Q5U209|RNH2A_RAT RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|55562777|gb|AAH86345.1| Rnaseh2a protein [Rattus norvegicus] gi|55824706|gb|AAH86539.1| Ribonuclease H2, subunit A [Rattus norvegicus] gi|149037817|gb|EDL92177.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus] gi|149037820|gb|EDL92180.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus] Length = 301 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 74/221 (33%), Gaps = 42/221 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SS 78 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89 Query: 79 AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSAL 119 ++ S I I A + + + Sbjct: 90 VGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGF 173 R + K DS+ ++AASIIAKV RD + + DYG Sbjct: 150 YQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +++ G R ++ + + Sbjct: 209 ---SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAIL 246 >gi|268324099|emb|CBH37687.1| ribonuclease HII [uncultured archaeon] gi|268326416|emb|CBH40004.1| ribonuclease HII [uncultured archaeon] Length = 210 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 26/202 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE GRG + G + VA ++ G+ DSK++S +RE L + I + + + Sbjct: 6 IGVDEAGRGPVIGSMFVAGVLNYDGLEELGVKDSKRLSASRREHLAKIIEDATEVHVVEM 65 Query: 87 SHQYIDKHNI----HKATLDAIYHAVENLQVIPRSALIDGRSIPED-----------LPC 131 + IDK +K T++ + + Q Sbjct: 66 TASEIDKAREERTLNKITVELFSEVINHFQPARAFVDAADVKPERFAANLRSNYKRVGEL 125 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE 190 + + K D ++AASI+AKV RDR +R+ + G + GYP K Q +K Sbjct: 126 EIISEWKADDHYPVVSAASIVAKVHRDRSIRVLEA---EIGAEIGSGYPADPKTIQFLKG 182 Query: 191 K--G-----PSCIHRLTFRPLR 205 G R +++ + Sbjct: 183 LLKGKELDNIPAYVRRSWKTVH 204 >gi|84370099|ref|NP_001033623.1| ribonuclease H2 subunit A [Bos taurus] gi|110816412|sp|Q2TBT5|RNH2A_BOVIN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|83638655|gb|AAI09683.1| Ribonuclease H2, subunit A [Bos taurus] gi|296485915|gb|DAA28030.1| ribonuclease H2 subunit A [Bos taurus] Length = 299 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 42/221 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SS 78 V G+DE GRG + GP+V A + + DSK +S +R+ L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGDF 89 Query: 79 AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSAL 119 ++ S I + A + A + + Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGLPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGF 173 R + K D++ ++AASI AKV RD + + DYG Sbjct: 150 YQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +++ G R ++R +++ Sbjct: 209 ---SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSIL 246 >gi|294495980|ref|YP_003542473.1| RNase HII [Methanohalophilus mahii DSM 5219] gi|292666979|gb|ADE36828.1| RNase HII [Methanohalophilus mahii DSM 5219] Length = 215 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 33/212 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 +AGIDE G+G + GP+ VA +I+D + I G+ DSKK+S K+RE L +I A Sbjct: 3 IAGIDEAGKGPVIGPMCVAGVIMDESKINALKNLGVADSKKLSPKRRENLARQIRKYADG 62 Query: 82 S----ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID---------------- 121 I + + + + +V + + Sbjct: 63 IFIQEIEACQIDELRNIMSMNDIMIRGFSSVLENLKPDLAYVDAADVNAERFGKKLLAAF 122 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP- 180 + + + + D I ++AASIIAKV RD L+ + D GYP Sbjct: 123 EKKHEREKKPEIISEHGADDIYPIVSAASIIAKVRRDELIGNIKTAINE---DFGSGYPS 179 Query: 181 ---TAKHQ-QVIKEKG-PSCIHRLTFRPLRNL 207 T K + + + G R +++ L Sbjct: 180 DPKTKKFLQEWMDKNGNLPDFVRHSWKTAAKL 211 >gi|126178454|ref|YP_001046419.1| ribonuclease HII [Methanoculleus marisnigri JR1] gi|125861248|gb|ABN56437.1| RNase HII [Methanoculleus marisnigri JR1] Length = 205 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 25/200 (12%) Query: 29 IDEVGRGALAGPVVVAAIILD--PNNIPFGINDSKKISHKKREELYEKITSSAIISI--- 83 +DE G+G++ GP+VVAA+ + I DSK + K+RE LYE + I+I Sbjct: 1 MDEAGKGSVLGPMVVAAVGCREIEDLATLPIRDSKVLRPKQREALYEILFRDFSIAIVTI 60 Query: 84 ----------SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 + + + + + +A + + + D PC+ Sbjct: 61 DAAGIDDARSRMSMNTCVAELHAEALMSLQPEYAYVDACDVNAERYGRTVAELLDYPCEI 120 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ----VI 188 A D+ + AAS++AKVTRDR +R ++Y G GYP+ + I Sbjct: 121 VAEHHADARHKVVGAASVVAKVTRDRAIRELEQQYGAIG----SGYPSDPATIEFLRGYI 176 Query: 189 KEKG-PSCIHRLTFRPLRNL 207 + G P R +++ + NL Sbjct: 177 RSHGSPPACARRSWKTVTNL 196 >gi|15668305|ref|NP_247101.1| ribonuclease HII [Methanocaldococcus jannaschii DSM 2661] gi|2495822|sp|Q57599|RNH2_METJA RecName: Full=Ribonuclease HII; Short=RNase HII gi|1590900|gb|AAB98116.1| ribonuclease HII (rnhB) [Methanocaldococcus jannaschii DSM 2661] Length = 230 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 78/222 (35%), Gaps = 42/222 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELY-------- 72 + GIDE GRG + GP+VV A + + G+ DSK+++ KR L Sbjct: 2 IIIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGY 61 Query: 73 --------------------EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ 112 I +A ++ + ++ + Sbjct: 62 VEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKF 121 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 I+ +L + A K D+ ++AASIIAK RD ++ K Y D G Sbjct: 122 EDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDIG 181 Query: 173 FDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP+ K + +++ I R ++ + + Sbjct: 182 ----SGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRIL 219 >gi|325974872|gb|ADZ47886.1| ribonuclease H2 subunit A [Capra hircus] Length = 286 Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 75/221 (33%), Gaps = 42/221 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SS 78 V G+DE GRG + GP+V A + + DSK +S +R+ L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDGDF 89 Query: 79 AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSAL 119 ++ S I + A + A + Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTGGLPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGF 173 R + K D++ ++AASI AKV RD + + DYG Sbjct: 150 YQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQDLDTDYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +++ G R ++R +++ Sbjct: 209 ---SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSIL 246 >gi|116754092|ref|YP_843210.1| ribonuclease HII [Methanosaeta thermophila PT] gi|121694604|sp|A0B796|RNH2_METTP RecName: Full=Ribonuclease HII; Short=RNase HII gi|116665543|gb|ABK14570.1| RNase HII [Methanosaeta thermophila PT] Length = 211 Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 79/207 (38%), Gaps = 27/207 (13%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 + G+DE G+G + G + VA ++ +I G+ DSK +S +RE + KI S A Sbjct: 3 LILGVDEAGKGPVIGSMFVAGVVFSEEDIFDLAACGVKDSKLLSPTRRESMERKILSIAR 62 Query: 81 I--------------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 + + ++ + + + + A+ + + Sbjct: 63 ESFVLEVTAQQIDDLRMVMSMNEIMVRAHSRVVSRLQADRAILDAADVNAERFAQRVREV 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH- 184 P A D + +AAASIIAKV RDR +R G GYP+ Sbjct: 123 SGKPIDILAEHNADRKHIVVAAASIIAKVARDRSIRDLEAAL---GRPLGSGYPSDPATV 179 Query: 185 ---QQVIKEKG-PSCIHRLTFRPLRNL 207 ++ I+E G R ++ + L Sbjct: 180 RFLKEWIEENGDLPSFVRKSWSTAQRL 206 >gi|150399435|ref|YP_001323202.1| ribonuclease HII [Methanococcus vannielii SB] gi|189043627|sp|A6UQ18|RNH2_METVS RecName: Full=Ribonuclease HII; Short=RNase HII gi|150012138|gb|ABR54590.1| ribonuclease HII [Methanococcus vannielii SB] Length = 244 Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 32/215 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 N + G+DE GRG + GP+V++ + + ++ + DSK+++ K+REE Y I Sbjct: 21 NEKIILGLDEAGRGPVLGPMVISVVKVTEKDLDKINSLDLKDSKQLTKKRREEYYNIINE 80 Query: 78 SAIISISSASHQYIDKHNIHKA------------------TLDAIYHAVENLQVIPRSAL 119 + + + ID++ + + ++ +S L Sbjct: 81 CFEVQKIVLAPEKIDEYMKTSNLNKIELSAFSKLSNHFLKEYENVKIFIDACSSSEQSFL 140 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 ++ + + A K D ++AASIIAKVTRD ++ +++ D G GY Sbjct: 141 NQFKAKLINKKVEIIAEHKADEKYKIVSAASIIAKVTRDNIIESYKEEFGDIG----SGY 196 Query: 180 -PTAKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 K ++ +K I R ++ + L Sbjct: 197 PGDPKTKEFLKRFVKEHKKLPKIARGSWATSKKLL 231 >gi|282165631|ref|YP_003358016.1| ribonuclease HII [Methanocella paludicola SANAE] gi|282157945|dbj|BAI63033.1| ribonuclease HII [Methanocella paludicola SANAE] Length = 217 Score = 92.4 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 31/205 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 +AGIDE GRG + GP+VV + + + G+ DSK ++ KKREE KI Sbjct: 1 MIAGIDEAGRGPVIGPMVVCGVSVSEKKLRKIKSMGLKDSKLLTPKKREEFAVKIKDVCE 60 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENL--------------QVIPRSALIDGRSIP 126 + + ID + L+ + + + Sbjct: 61 YELVVVGPERIDSRANDELNLNELEVECFSNILKALRPATAYVDACDVNAERFGINVKKG 120 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK-HQ 185 D + + D ++AASI+AKV RD L++ G + GY + Sbjct: 121 LDFEVEVISRHNADRDYPVVSAASILAKVHRDALIKEICDS---IGENVGSGYSHDQVTI 177 Query: 186 QVIKEKGP-------SCIHRLTFRP 203 + +K G R +++ Sbjct: 178 EFLK--GYYKKNKCMPPFARKSWKT 200 >gi|34329831|gb|AAQ64005.1| ribonuclease H2 [Homo sapiens] Length = 299 Score = 92.4 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 74/220 (33%), Gaps = 41/220 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSA 79 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ T Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89 Query: 80 IISISSASHQYIDKHNIHK-------------------ATLDAIYHAVENLQVIPRSALI 120 ++ S I + A + + + Sbjct: 90 GWALDVLSPNLISTSMLGWVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFD 174 R + K D++ ++AASI AKV RD + + DYG Sbjct: 150 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG-- 207 Query: 175 SHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +KE G R ++R + + Sbjct: 208 --SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTIL 245 >gi|311248923|ref|XP_003123380.1| PREDICTED: ribonuclease H2 subunit A-like [Sus scrofa] Length = 301 Score = 92.4 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 42/221 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SS 78 V G+DE GRG + GP+V A + + DSK +S +R+ L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMEEDGDF 89 Query: 79 AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSAL 119 ++ S I + A + A + + Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGF 173 R + K D++ ++AASI AKV RD + + DYG Sbjct: 150 YQERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +++ G R ++R +++ Sbjct: 209 ---SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSIL 246 >gi|145329613|ref|NP_001077956.1| ribonuclease HII family protein [Arabidopsis thaliana] gi|330252564|gb|AEC07658.1| Ribonuclease H2 subunit A [Arabidopsis thaliana] Length = 277 Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 14/191 (7%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYE--KITSSAII 81 GIDE GRG + GP+V + + DSK + +KREELYE K+ S Sbjct: 18 GIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKSLGW 77 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ + + + K + L + + + K DS Sbjct: 78 AVDVIDPRELSAKMLAKVLDMGVLLTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADS 137 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGY-PTAKHQQVIKEK-----GP 193 + ++ ASI+AKVTRDR ++ + + + GY + + + + G Sbjct: 138 LFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGF 197 Query: 194 SCIHRLTFRPL 204 + R ++ Sbjct: 198 PSLVRFSWGTC 208 >gi|55648379|ref|XP_512415.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Pan troglodytes] Length = 299 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 74/220 (33%), Gaps = 41/220 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSA 79 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ T Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89 Query: 80 IISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSALI 120 ++ S I I A + + + Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALYQGVNVTQVFVDTVGMPETY 149 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFD 174 R + K D++ ++AASI AKV RD + + DYG Sbjct: 150 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSDTDYG-- 207 Query: 175 SHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +KE G R ++R + + Sbjct: 208 --SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTIL 245 >gi|315364763|pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex gi|315364766|pdb|3PUF|D Chain D, Crystal Structure Of Human Rnase H2 Complex gi|315364769|pdb|3PUF|G Chain G, Crystal Structure Of Human Rnase H2 Complex gi|315364772|pdb|3PUF|J Chain J, Crystal Structure Of Human Rnase H2 Complex gi|315364775|pdb|3PUF|M Chain M, Crystal Structure Of Human Rnase H2 Complex gi|315364778|pdb|3PUF|P Chain P, Crystal Structure Of Human Rnase H2 Complex Length = 302 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 74/220 (33%), Gaps = 41/220 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSA 79 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ T Sbjct: 33 VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 92 Query: 80 IISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSALI 120 ++ S I I A + + + Sbjct: 93 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 152 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFD 174 R + K D++ ++AASI AKV RD + + DYG Sbjct: 153 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG-- 210 Query: 175 SHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +KE G R ++R + + Sbjct: 211 --SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTIL 248 >gi|48145799|emb|CAG33122.1| JUNB [Homo sapiens] Length = 299 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 74/220 (33%), Gaps = 41/220 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSA 79 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ T Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89 Query: 80 IISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSALI 120 ++ S I I A + + + Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFD 174 R + K D++ ++AASI AKV RD + + DYG Sbjct: 150 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG-- 207 Query: 175 SHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +KE G R ++R + + Sbjct: 208 --SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTIL 245 >gi|38455391|ref|NP_006388.2| ribonuclease H2 subunit A [Homo sapiens] gi|20981704|sp|O75792|RNH2A_HUMAN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Aicardi-Goutieres syndrome 4 protein; Short=AGS4; AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|15079910|gb|AAH11748.1| Ribonuclease H2, subunit A [Homo sapiens] gi|119604719|gb|EAW84313.1| ribonuclease H2, large subunit [Homo sapiens] gi|189067523|dbj|BAG37728.1| unnamed protein product [Homo sapiens] Length = 299 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 74/220 (33%), Gaps = 41/220 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSA 79 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ T Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89 Query: 80 IISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSALI 120 ++ S I I A + + + Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFD 174 R + K D++ ++AASI AKV RD + + DYG Sbjct: 150 QARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG-- 207 Query: 175 SHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +KE G R ++R + + Sbjct: 208 --SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTIL 245 >gi|257052068|ref|YP_003129901.1| ribonuclease HII [Halorhabdus utahensis DSM 12940] gi|256690831|gb|ACV11168.1| ribonuclease HII [Halorhabdus utahensis DSM 12940] Length = 234 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 27/203 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 AG+DE G+G + G + A ++ DP ++P ++DSK +S ++REEL I A S Sbjct: 25 AGVDEAGKGPVLGSMFAACVVADPADLPDDVDDSKDLSAERREELATVIRDRAHAVAVSE 84 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-------------- 132 + E L+ + L + + Sbjct: 85 IPVARIDDTETDMNTLTVVAHAEALEPVASDGLATYLDAGDTNAVRFERRVADRIEADLD 144 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQ-V 187 A D+ + AASIIAKV RD + +Y D G GYP T + Sbjct: 145 LRAEHGADAAYPIVGAASIIAKVERDAHVAELAAEYGDLG----SGYPGDSTTRDFLEDY 200 Query: 188 IKEKG-PSCIHRLTFRP---LRN 206 I E G R +++ +RN Sbjct: 201 IAEHGELPACARESWQTSRDVRN 223 >gi|297380504|gb|ADI35391.1| Ribonuclease HII [Helicobacter pylori v225d] Length = 154 Score = 91.6 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 3/128 (2%) Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP--EDLPCQAFAVIK 138 + S ID + AI +EN + IDG ++ +IK Sbjct: 13 FWVVKKSANEIDNLGLGACLKLAIQKILENGCSLANQIKIDGNTVFGLNKRYPNIQTIIK 72 Query: 139 GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHR 198 GD IA AS++AK +DR MR H + +YG+D + GY T +H + + + G + HR Sbjct: 73 GDEKIAQIAMASVLAKAFKDREMRQLHALFKEYGWDKNCGYGTKQHIEAMIKLGATPFHR 132 Query: 199 LTFRPLRN 206 +F L+N Sbjct: 133 HSF-TLKN 139 >gi|288561094|ref|YP_003424580.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1] gi|288543804|gb|ADC47688.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1] Length = 219 Score = 91.6 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 25/205 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G+DE GRG + GP+VVA I++ G+ DSK+I+ K+R LY K+T Sbjct: 5 GLDEAGRGPVLGPMVVAGIVIPEKKEKIIERMGVKDSKRITPKRRAVLYRKLTRMFDYET 64 Query: 84 SSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS---------IPEDL 129 S + ID N+++ A+ + L+ Sbjct: 65 VEISAKDIDLLRAKGVNLNQIEKLAMMRIIAKLKADTIIIDSLDIKEGRLEEEMQNFVGE 124 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY---PDYGFDSHVGYPT-AKHQ 185 + A K D + + AASIIAK RD ++ +K+Y GYP+ K + Sbjct: 125 GSKVIAEHKADDKYIVVGAASIIAKTKRDEIINQINKEYIRSTGNKDGIGSGYPSDPKTK 184 Query: 186 QVIKEKGP---SCIHRLTFRPLRNL 207 +K R ++ ++ + Sbjct: 185 NFLKNYKYDEMPDFVRRSWGTVQRI 209 >gi|332252995|ref|XP_003275638.1| PREDICTED: ribonuclease H2 subunit A-like [Nomascus leucogenys] Length = 299 Score = 91.6 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 72/220 (32%), Gaps = 41/220 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSA 79 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDRDFV 89 Query: 80 IISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSALI 120 ++ S I I A + + + Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFD 174 + K D++ ++AASI AKV RD + + DYG Sbjct: 150 QAWLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG-- 207 Query: 175 SHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +KE G R ++R + + Sbjct: 208 --SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTIL 245 >gi|27382791|ref|NP_774320.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110] gi|27355964|dbj|BAC52945.1| blr7680 [Bradyrhizobium japonicum USDA 110] Length = 111 Score = 91.6 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 1/98 (1%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREEL 71 E + E VAG+DE G LAGPV A+IL P GI+DSKK+ REEL Sbjct: 2 LRFETSLWESGHAAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLDAAAREEL 61 Query: 72 YEKITSSAI-ISISSASHQYIDKHNIHKATLDAIYHAV 108 ++I A ++ + ID NI+ A + A+ AV Sbjct: 62 AKEIKEKAESWCVAFVEVEEIDAINIYWAGIQAMQRAV 99 >gi|48478335|ref|YP_024041.1| ribonuclease HII [Picrophilus torridus DSM 9790] gi|73917829|sp|Q6KZK4|RNH2_PICTO RecName: Full=Ribonuclease HII; Short=RNase HII gi|48430983|gb|AAT43848.1| ribonuclease HII [Picrophilus torridus DSM 9790] Length = 199 Score = 91.6 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 24/199 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V GIDE GRG + GP+V+A + ++I F +NDSK ++ KR ++ ++ Sbjct: 3 VCGIDEAGRGPVIGPMVMAMVC--ADDINFYVNDSKLLTRNKRSLIFNDVSGLYHKYYII 60 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC----------QAFA 135 + D H +A + + + + + Sbjct: 61 NPAEIDDAVKKHSLNNLEEQYAEKLILKAECEKIYIDCFDVNESRLERILKDRTGKEVIC 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKGPS 194 D ++AASIIAKV RD + Y D+G GYP+ K + + E Sbjct: 121 RHHADRDIKIVSAASIIAKVLRDNEIEKLKSIYGDFG----SGYPSDPKTLRFL-EHSII 175 Query: 195 CI------HRLTFRPLRNL 207 R ++ +NL Sbjct: 176 NHDNIDNIVRKEWKTYKNL 194 >gi|296108883|ref|YP_003615832.1| ribonuclease HII [Methanocaldococcus infernus ME] gi|295433697|gb|ADG12868.1| ribonuclease HII [Methanocaldococcus infernus ME] Length = 223 Score = 91.2 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 34/208 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE GRG + GP+VV A + DSKK+S +KRE+L +++ I I Sbjct: 3 IGVDEAGRGPVIGPLVVCA---YASEEEIEAEDSKKLSKEKREKLRKELEKKGIFEIVKV 59 Query: 87 SHQYIDKHNIHKA-------------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA 133 S + +++ K H ++++++ S + L + Sbjct: 60 SAEELNRLMKSKNLNEIEVELFAKAIKNLIEKHNLKDVEIYVDSCSPNREKFKRKLLSKL 119 Query: 134 F--------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184 K D ++AASIIAK RDR + K Y D+G GYP+ K Sbjct: 120 RGLSIKDLIVEHKADEKYKVVSAASIIAKTERDREIEELKKIYGDFG----SGYPSDPKT 175 Query: 185 QQVIKEK-----GPSCIHRLTFRPLRNL 207 ++ + I R + + + Sbjct: 176 KRFLLYYYNEYREFPSIVREHWETCKRI 203 >gi|3334761|emb|CAB09725.1| ribonuclease HI large subunit [Homo sapiens] Length = 299 Score = 91.2 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 74/220 (33%), Gaps = 41/220 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSA 79 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ T Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89 Query: 80 IISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSALI 120 ++ S I I A + + + Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFD 174 + + K D++ ++AASI AKV RD + + DYG Sbjct: 150 QAQLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG-- 207 Query: 175 SHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +KE G R ++R + + Sbjct: 208 --SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTIL 245 >gi|73986851|ref|XP_542041.2| PREDICTED: similar to Ribonuclease HI large subunit (RNase HI large subunit) (RNase H(35)) (Ribonuclease H2) (RNase H2) [Canis familiaris] Length = 299 Score = 91.2 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 42/221 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKI---TSS 78 V G+DE GRG + GP+V A + + DSK +S +R+ L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLGDLEALKVADSKTLSESERDRLFVKMEKDRDF 89 Query: 79 AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSAL 119 ++ S I + A + A + + Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGF 173 R + K D++ ++AASI AKV RD+ + DYG Sbjct: 150 YQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKSWHFVEKLQDLDADYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +++ G R ++R +++ Sbjct: 209 ---SGYPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSIL 246 >gi|76801839|ref|YP_326847.1| ribonuclease HII [Natronomonas pharaonis DSM 2160] gi|115305552|sp|Q3IRF6|RNH2_NATPD RecName: Full=Ribonuclease HII; Short=RNase HII gi|76557704|emb|CAI49287.1| ribonuclease H II [Natronomonas pharaonis DSM 2160] Length = 212 Score = 91.2 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 78/204 (38%), Gaps = 23/204 (11%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 M P+ G+DE G+G + G + VAA+ +P GI+DSK+++ +RE L +++ + I Sbjct: 1 MTPLVGVDEAGKGPVVGSMFVAAVRAPTEALPDGIDDSKRLTDDRREALADRLRDADRID 60 Query: 83 ISSASHQ--------YIDKHNIHKATLDA-----IYHAVENLQVIPRSALIDGRSIPEDL 129 ++ Q D A + + + D + L Sbjct: 61 VAVVECQPADIDDANMNDLTVAAHAAALDGVAASGETVLCDAGDVDAGRFADRVAAAATL 120 Query: 130 PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI- 188 A D + AASIIAK R+R + ++Y G GYP+ + Sbjct: 121 DVSVAAEHGADGSDDLVGAASIIAKSARERHVEQLSEQYGAVG----SGYPSDPTTKAFL 176 Query: 189 -----KEKGPSCIHRLTFRPLRNL 207 +E G R ++ + Sbjct: 177 REAFEQEGGFPPCVRTSWSTCERI 200 >gi|301171214|ref|NP_001180335.1| ribonuclease H2, subunit A [Xenopus laevis] gi|71051192|gb|AAH99334.1| Unknown (protein for MGC:116529) [Xenopus laevis] Length = 302 Score = 91.2 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 54/246 (21%) Query: 13 ELEA-----MVREKNMWPVA-------GIDEVGRGALAGPVVVAAIILD----PNNIPFG 56 E E + + + GIDE GRG + GP+V + Sbjct: 5 EFERDNSQSRLLSSPVPEICRTEDCCLGIDEAGRGPVLGPMVYGICYCPVARKKDLQDSK 64 Query: 57 INDSKKISHKKREELYEKITSSAI---ISISSASHQYIDKHNIHKATLDAIYHAVE---- 109 + DSK +S RE L+EK+ S+ ++ S I +A + + + Sbjct: 65 VADSKTLSEADRERLFEKLNGSSDYIGWALHILSPNVISTSMQQRAKYNLNALSHDTAIG 124 Query: 110 ---------------NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 + + + + K DS+ ++AASI AK Sbjct: 125 LIQFALDAGVQLTEVFVDTVGPAEKYQEKLKKIFPELDVTVRPKADSLFPVVSAASICAK 184 Query: 155 VTRDR------LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFR 202 V RDR + + DYG GYP K ++ + G R ++ Sbjct: 185 VARDRVVKDWKFVEDLGELDADYG----SGYPNDPKTKEWLSRHLDPVFGYPQFVRFSWS 240 Query: 203 PLRNLS 208 + + Sbjct: 241 TAQTIL 246 >gi|303388657|ref|XP_003072562.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506] gi|303301703|gb|ADM11202.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506] Length = 239 Score = 91.2 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 77/218 (35%), Gaps = 32/218 (14%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEK 74 + + E + V GIDE GRG + G +V A+I G DSK ++ +R + ++ Sbjct: 9 SSLEEISEEVVVGIDEAGRGPVIGYMVYGALISSRTTLENTGFRDSKVLTSGQRHDFFKM 68 Query: 75 ITSS-AIISISSASHQYIDKHNIHKATLDAIYHAV-----------ENLQVIPRSALIDG 122 I YI + K+T + + +V G Sbjct: 69 IKERGFGYVYHCTHPDYITEMMQVKSTSLNEISLISVLKILEEIKAKCKKVDTVYVDALG 128 Query: 123 RSIPED------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 P + K DS ++ ASI+AKV RD L+ +G + Sbjct: 129 DCEKYKARLEEAYPYKFVIEEKADSKFQIVSGASIVAKVQRDILIS-------QFGSNLG 181 Query: 177 VGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP+ + +K G R ++ ++ + Sbjct: 182 SGYPSDPDTIKWLKRNANAVFGFPPGVRYSWATVKRIL 219 >gi|145590574|ref|YP_001152576.1| ribonuclease HII [Pyrobaculum arsenaticum DSM 13514] gi|189043645|sp|A4WHQ7|RNH2_PYRAR RecName: Full=Ribonuclease HII; Short=RNase HII gi|145282342|gb|ABP49924.1| RNase HII [Pyrobaculum arsenaticum DSM 13514] Length = 198 Score = 90.8 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 24/199 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIISIS 84 V GIDE GRG + GP+V+A ++ D G+ DSK +S + RE LY KI A + ++ Sbjct: 5 VGGIDEAGRGPVVGPLVLAIVVGDSEALSKIGVRDSKSLSPRAREVLYGKILEMA-VCVN 63 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP------------CQ 132 A + + + +++ D+ + Sbjct: 64 YAVVEPYEIDLHVSRGMLNALEMKYAAKLMELCPADLYYVDSPDVKAARFGDGLSFLTGR 123 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK 191 + +AAASI+AKV RDRL+ + K+ D+G GYP+ K ++ ++ Sbjct: 124 RVVSLHKGEAVPQVAAASIVAKVVRDRLVEMLRKEVGDFG----SGYPSDRKTREWLR-- 177 Query: 192 G---PSCIHRLTFRPLRNL 207 G P R ++ + L Sbjct: 178 GGRIPHECVRWSWETVGKL 196 >gi|289192478|ref|YP_003458419.1| ribonuclease HII [Methanocaldococcus sp. FS406-22] gi|288938928|gb|ADC69683.1| ribonuclease HII [Methanocaldococcus sp. FS406-22] Length = 230 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 77/222 (34%), Gaps = 42/222 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELY-------- 72 V GIDE GRG + GP+VV A + + G+ DSK+++ KR L Sbjct: 2 IVIGIDEAGRGPVLGPMVVCAFAIEKDKEEELKKLGVRDSKELTKNKRAYLKKLLEDLGY 61 Query: 73 --------------------EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ 112 +I +A ++ + + + Sbjct: 62 VEKLILEAEKINQLMSTINLNEIEINAFSKVAENLIEKLGIKDEKIEIYLDACSTNAKKF 121 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 +D +L + A K D+ ++AASIIAK RD ++ K Y D G Sbjct: 122 ENDFKEKLDNIIKERNLNVKIIAEHKADAKYSVVSAASIIAKAERDEIIDNYKKIYGDIG 181 Query: 173 FDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP+ K + ++ I R ++ + + Sbjct: 182 ----SGYPSDPKTIKFLENYFKKHKKLPDIARTHWKTCKRIL 219 >gi|86171485|ref|XP_966221.1| ribonuclease HII, putative [Plasmodium falciparum 3D7] gi|46361187|emb|CAG25051.1| ribonuclease HII, putative [Plasmodium falciparum 3D7] Length = 288 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 81/221 (36%), Gaps = 35/221 (15%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72 + E V GIDE GRG + GP+V + + + I+DSKKI+ RE+++ Sbjct: 9 LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCNKEHEKLLKEMKIDDSKKITEADREKMF 68 Query: 73 EKITSS---AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVEN 110 K+ +S + Q I I Sbjct: 69 VKLNNSKLPFGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVF 128 Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + + ++++ + + + K DS+ ++AASI AKVTRD L++ + P Sbjct: 129 VDTVGKASVYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYEEPI 188 Query: 171 YGFDS--HVGY-PTAKHQQVIKE-----KGPSCIHRLTFRP 203 D+ GY + +K G I R ++ Sbjct: 189 INIDNGFGSGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWST 229 >gi|194213064|ref|XP_001495257.2| PREDICTED: similar to Ribonuclease H2 subunit A (RNase H2 subunit A) (Ribonuclease HI subunit A) (Ribonuclease HI large subunit) (RNase HI large subunit) (RNase H(35)) (Aicardi-Goutieres syndrome 4 protein) (AGS4) [Equus caballus] Length = 299 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 74/219 (33%), Gaps = 42/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SSAI 80 G+DE GRG + GP+V A + + DSK +S +R+ L+ ++ Sbjct: 32 GVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFARMKEDGDFVG 91 Query: 81 ISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSALID 121 ++ S I + A + A + + Sbjct: 92 WALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVKVAQVFVDTVGMPETYQ 151 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFDS 175 R + K DS+ ++AASI AKV RD + + DYG Sbjct: 152 QRLQQRFPGIEVTVKAKADSLYPVVSAASICAKVARDQAVKNWKFVEKLQDSDTDYG--- 208 Query: 176 HVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + ++ G R ++R +++ Sbjct: 209 -SGYPNDPKTKAWLRRHVEPVFGFPQFVRFSWRTAQSIL 246 >gi|161528901|ref|YP_001582727.1| ribonuclease HII [Nitrosopumilus maritimus SCM1] gi|160340202|gb|ABX13289.1| ribonuclease HII [Nitrosopumilus maritimus SCM1] Length = 205 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 28/206 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA-I 80 + G+D+ GRG++ GP+V++ I ++ N G+ DSKK+S K RE LY++I Sbjct: 3 ICGVDDAGRGSMLGPLVISGISINKKNLRKLSSLGVKDSKKLSPKSRELLYKQIIELVDD 62 Query: 81 ISISSASHQYIDKHNIHK------ATLDAIYHAVENLQVIPRSALIDGRSIPED------ 128 I+ + + ID A A + + Sbjct: 63 YYIAKITPRSIDASVKKHGLNELEAKYMAKVVLKLDPDTSYVDSCDVNPKRFGKEISKLS 122 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQV 187 + + DS + ++AASIIAKVTRDR + K Y D GYP+ K + Sbjct: 123 DNHKIKSYHHADSRFVVVSAASIIAKVTRDRAIEKLRKTY-----DLGSGYPSDSKTVKF 177 Query: 188 IKEK-----GPSCIHRLTFRPLRNLS 208 + R +++P++ + Sbjct: 178 VTRYYKTSKSLPTFVRKSWKPVQKIL 203 >gi|295132558|ref|YP_003583234.1| ribonuclease HII [Zunongwangia profunda SM-A87] gi|294980573|gb|ADF51038.1| ribonuclease HII [Zunongwangia profunda SM-A87] Length = 73 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 40/59 (67%) Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 +SIA ASI+AK RD M I H++YP Y + + GYPT +H++ I++ G + HR +F+ Sbjct: 1 MSIATASILAKTYRDEYMEIIHEEYPIYNWKKNKGYPTKEHREAIRKYGITKYHRKSFK 59 >gi|109123571|ref|XP_001109423.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Macaca mulatta] Length = 300 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 74/221 (33%), Gaps = 42/221 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSS--- 78 V G+DE GRG + GP+V A + + DSK + +RE L+ K+ + Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVADSKTLLESERERLFAKMEENRDF 89 Query: 79 AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSAL 119 ++ S I I A + + + Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGF 173 R + K D++ ++AASI AKV RD + + DYG Sbjct: 150 YQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWKFVEKLQDSDTDYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +KE G R ++R + + Sbjct: 209 ---SGYPNDPKTKVWLKEHVEPVFGFPQFVRFSWRTAQTIL 246 >gi|196017000|ref|XP_002118348.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens] gi|190579064|gb|EDV19170.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens] Length = 299 Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 78/220 (35%), Gaps = 45/220 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT--SSAII 81 GIDE GRG + G +V A G+ DSK ++ R+EL++KI S Sbjct: 32 GIDEAGRGPVLGAMVYGACYYPLSQSEKVKELGVADSKVLTEDMRDELFQKINSDDSVGW 91 Query: 82 SISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE-- 127 + S I A + +QV G + Sbjct: 92 LVEIISPSDISTKMLARTKYSLNAVSHDAAINLIRQSIQKGVQVKEIYVDTVGVAENYQN 151 Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD--------YGFD 174 K D++ ++AASIIAKVTRD+++ K+P+ YG Sbjct: 152 KLSELFPDITIKVTPKADALFPCVSAASIIAKVTRDKVLSNW--KFPEDESYNSSDYG-- 207 Query: 175 SHVGYPT-AKHQQVI-----KEKGPSCIHRLTFRPLRNLS 208 GYP+ Q+ + K G R ++ + + Sbjct: 208 --CGYPSDPATQKWLNSNLDKVFGYPQFVRFSWSTCQKIL 245 >gi|331234733|ref|XP_003330025.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309015|gb|EFP85606.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 349 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 82/251 (32%), Gaps = 64/251 (25%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKRE 69 E ++ N + GIDE GRG + GP+V A G DSK ++H++RE Sbjct: 60 EEQLKRDN--WIMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRRRE 117 Query: 70 ELYEKITS---------SAIISISSASHQYIDKHNI-------------------HKATL 101 EL E I ++ + I + A Sbjct: 118 ELLEMIVHPPADQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALD 177 Query: 102 DAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 + + + + K DSI + AAS++AKVTRD ++ Sbjct: 178 LQYNLQHIYVDTLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAASVVAKVTRDAIV 237 Query: 162 RIAHKKYPDYGFDSH------------------VGYPT-AKHQQVIKE-----KGPSCIH 197 H +P+ +H GYP+ + + E G + Sbjct: 238 S--HWIHPE---STHPQKRKSSQEDEDATTSLGSGYPSDPNTVKWLSENFNTIFGFGQLV 292 Query: 198 RLTFRPLRNLS 208 R ++ ++ L Sbjct: 293 RFSWGTVKTLL 303 >gi|257456662|ref|ZP_05621855.1| ribonuclease HII [Treponema vincentii ATCC 35580] gi|257445929|gb|EEV20979.1| ribonuclease HII [Treponema vincentii ATCC 35580] Length = 165 Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 68/157 (43%), Gaps = 16/157 (10%) Query: 61 KKISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 KK+S K+RE I A I+S IDK NI +ATL A+ A + L R Sbjct: 4 KKLSPKRRETARAAILEGALYWHIASMPPDLIDKINILQATLAAMKEAFDRLFARYRRDS 63 Query: 120 ID---------------GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 I + A K D + AASI+AK RDR M Sbjct: 64 IGKTADIEKSLTVIVDGNQLPDIHGDFNLTAEPKADGRYPCVMAASILAKTERDRCMMEY 123 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 HK+YP Y +D H GY T H+ +I+ G S I R +F Sbjct: 124 HKQYPLYRYDLHKGYGTKLHRSLIEVYGASPIQRHSF 160 >gi|198428317|ref|XP_002127465.1| PREDICTED: similar to ribonuclease H2, large subunit [Ciona intestinalis] Length = 292 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 74/214 (34%), Gaps = 33/214 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V A+ + G +DSK + ++RE L+E + ++ Sbjct: 32 GIDEAGRGPVLGPMVYASCFTPISCKDKLAGLGCDDSKVLKEEQRESLFETLNKASEYIG 91 Query: 81 ISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSALID 121 I S YI I A + + + Sbjct: 92 WMIHILSPAYISTSMLGRSKYNLNSISHDTAIDLIRSALKLGVEVTEVYVDTVGPPQTYA 151 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH-KKYPDYGFDSHVGYP 180 + + K DS ++AASI AKV RD+ ++ ++ PD GYP Sbjct: 152 EKLKKIFPSIKFTVEKKADSKYPVVSAASICAKVCRDKAVKEWRFRENPDTDTKYGSGYP 211 Query: 181 T-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 + ++ G R ++ L Sbjct: 212 ADPVTKVWLRNNVDRIFGFPSFVRFSWSTTSKLL 245 >gi|291333356|gb|ADD93062.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C10] Length = 830 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 83/213 (38%), Gaps = 35/213 (16%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI 80 + G DE GRG + GP+VVAA+ + + I G++DSK +S KKREEL + I Sbjct: 3 MIVGADEAGRGPVLGPLVVAAVAIPATDLQRLIDLGVDDSKALSPKKREELNQIIHQEPT 62 Query: 81 IS--ISSASHQYIDKHNIHKA-------------------TLDAIYHAVENLQVIPRSAL 119 I S + ID K ++ + + Sbjct: 63 WQVSIIECSPERIDVTMEKKTLNDLEVDLFGEAIDSLEVERIEELILDACDTNEARFGRN 122 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + + + + D+ + + AASI+AKV RD++++ K D GF+ GY Sbjct: 123 VASKISSGKIVETVISKHGADAENPVVGAASIVAKVHRDKVIQSIAK---DRGFNVGSGY 179 Query: 180 PT-AKHQQVIKEKGPSCI-----HRLTFRPLRN 206 P+ + + S R ++ + Sbjct: 180 PSDPNTRSALPRL-LSQEQPDLDLRWGWKTVEK 211 >gi|91772495|ref|YP_565187.1| ribonuclease HII [Methanococcoides burtonii DSM 6242] gi|121691891|sp|Q12YN9|RNH2_METBU RecName: Full=Ribonuclease HII; Short=RNase HII gi|91711510|gb|ABE51437.1| Ribonuclease HII [Methanococcoides burtonii DSM 6242] Length = 213 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 33/211 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI- 80 + GIDE G+G + GP+ + + +D + G+ DSKK+S K+R L +I A Sbjct: 3 IIGIDEAGKGPVIGPMCIGGVRIDEDKSNALKNLGVADSKKLSPKRRVHLAAQIKKYADG 62 Query: 81 ISISSASHQYIDKHNIHKATLDAI------------YHAVENLQVIPRSALIDGRSIPED 128 + S ID+ + D + + + R Sbjct: 63 WFVYEVSPNQIDELRKLMSMNDIMVLAFGSVIEELPSDKIYADAADVKEERFGKRLFDNY 122 Query: 129 L-------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + P + + D + ++AASI+AKV RD L+ G D GYP+ Sbjct: 123 MEKHPDVSPPEVISKHGADDLFPVVSAASILAKVRRDELIEKIKVDM---GVDIGSGYPS 179 Query: 182 -AKHQQVIKEK-----GPSCIHRLTFRPLRN 206 K ++ ++ I R +++ + Sbjct: 180 DPKTKKFLENWYRENSSFPDIVRHSWKTAQK 210 >gi|45361019|ref|NP_989146.1| ribonuclease H2, subunit A [Xenopus (Silurana) tropicalis] gi|38494390|gb|AAH61614.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis] Length = 301 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 84/246 (34%), Gaps = 54/246 (21%) Query: 13 ELEA-----MVREKNMWPVA-------GIDEVGRGALAGPVVVAAIILD----PNNIPFG 56 E E + + + GIDE GRG + GP+V + Sbjct: 5 EFERDNSQNRLLSSPVPEICRTEDCCLGIDEAGRGPVLGPMVYGICYCPVARKKDLQDLK 64 Query: 57 INDSKKISHKKREELYEKITSSAII----------SISSASHQYIDKHNIHKATLDAIYH 106 + DSK +S +RE L+EK+ S++ +I S S Q K+N++ + D Sbjct: 65 VADSKTLSEAERERLFEKLNSTSDYIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIG 124 Query: 107 AVENL------------QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 ++ + + + K DS+ ++AASI AK Sbjct: 125 LIQFALDAGVQLKEVFLDTVGPAEKYQDKLKKIFPELDVTVRPKADSLFPVVSAASICAK 184 Query: 155 VTRDR------LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFR 202 V RDR + +YG GYP K + + G R ++ Sbjct: 185 VARDRVVKEWKFVEDLGDPDAEYG----SGYPNDPKTKDWLSRHLDPVFGYPQFVRFSWS 240 Query: 203 PLRNLS 208 + + Sbjct: 241 TTQTIL 246 >gi|89268632|emb|CAJ82403.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis] Length = 301 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 50/246 (20%), Positives = 84/246 (34%), Gaps = 54/246 (21%) Query: 13 ELEA-----MVREKNMWPVA-------GIDEVGRGALAGPVVVAAIILD----PNNIPFG 56 E E + + + GIDE GRG + GP+V + Sbjct: 5 EFERDNSQNRLLSSPVPEICRTEDCCLGIDEAGRGPVLGPMVYGICYCPVARKKDLQDLK 64 Query: 57 INDSKKISHKKREELYEKITSSAII----------SISSASHQYIDKHNIHKATLDAIYH 106 + DSK +S +RE L+EK+ S++ +I S S Q K+N++ + D Sbjct: 65 VADSKTLSEAERERLFEKLNSTSDYIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIG 124 Query: 107 AVENL------------QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 ++ + + + K DS+ ++AASI AK Sbjct: 125 LIQFALDAGVQLKEVFLDTVGPAEKYQDKLKKIFPELDVTVRPKADSLFPVVSAASICAK 184 Query: 155 VTRDR------LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFR 202 V RDR + +YG GYP K + + G R ++ Sbjct: 185 VARDRVVKDWKFVEDLGDPDAEYG----SGYPNDPKTKDWLSRHLDPVFGYPQFVRFSWS 240 Query: 203 PLRNLS 208 + + Sbjct: 241 TTQTIL 246 >gi|322490611|emb|CBZ25873.1| putative ribonuclease HII [Leishmania mexicana MHOM/GT/2001/U1103] Length = 474 Score = 88.9 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 36/73 (49%), Positives = 45/73 (61%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I+GD SLSIAAAS +AKVTRD LM YP YGF + GYP +H + + + G Sbjct: 392 VQPIIEGDKRSLSIAAASCLAKVTRDELMNYIDALYPGYGFRENKGYPVEQHMKYVAKNG 451 Query: 193 PSCIHRLTFRPLR 205 IHR T+RP R Sbjct: 452 LCPIHRKTYRPCR 464 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 13/82 (15%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L F I DSK +S ++R+ ++ Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195 Query: 74 KITSSAIISISSASHQYIDKHN 95 IT ++ +++ +H Sbjct: 196 MITGHVDFFDIASCKKFLVQHC 217 >gi|257387378|ref|YP_003177151.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286] gi|257169685|gb|ACV47444.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286] Length = 210 Score = 88.9 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 23/196 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DE G+G + G + AA+ DP ++P G+ DSK I ++RE L E I S A + ++ + Sbjct: 4 GVDEAGKGPVLGSMFAAAVRCDPGDLPDGVGDSKGIPDERRERLAEAIRSVAAVGLAEIT 63 Query: 88 HQYIDKHNIHK-------------ATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + ID A + + + D Sbjct: 64 PERIDDPETDMNTLTVAAHAEALSAVATDGLSGLVDAGDTDAERFGRRVADRVDSEIDLG 123 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK---- 189 + D + AASI+AK R+ + ++ G GYP+ ++ +K Sbjct: 124 SAHGADETDPLVGAASIVAKSAREAHVAALADEFGAVG----SGYPSDPATREFLKRYVD 179 Query: 190 EKG-PSCIHRLTFRPL 204 E G R ++ Sbjct: 180 EHGALPDCARTSWSTC 195 >gi|301771221|ref|XP_002921051.1| PREDICTED: ribonuclease H2 subunit A-like [Ailuropoda melanoleuca] gi|281353030|gb|EFB28614.1| hypothetical protein PANDA_009861 [Ailuropoda melanoleuca] Length = 299 Score = 88.9 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 78/221 (35%), Gaps = 42/221 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SS 78 V G+DE GRG + GP+V A + + DSK +S +R+ L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFVKMEEDGDF 89 Query: 79 AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSAL 119 ++ S I + A + A + + Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGPPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH------KKYPDYGF 173 R + K D++ ++AASI AKV RD+ ++ H DYG Sbjct: 150 YQERLQERFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWHFVETLQDLDADYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +++ G R ++R +++ Sbjct: 209 ---SGYPNDPKTKVWLRKHVEPVFGFPQFVRFSWRTAQSIL 246 >gi|1694784|emb|CAA60867.1| rnhB [Haemophilus influenzae] Length = 97 Score = 88.9 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSS 78 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR L E+I Sbjct: 4 YPQGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLALAEEIKEK 63 Query: 79 A-IISISSASHQYIDKHNIHKATLDAIYHAV 108 A ++ A ID+ NI +A+L A+ AV Sbjct: 64 ALAWALGRAEADEIDEINILQASLLAMTRAV 94 >gi|268559996|ref|XP_002637939.1| C. briggsae CBR-RNH-2 protein [Caenorhabditis briggsae] gi|187035517|emb|CAP25398.1| CBR-RNH-2 protein [Caenorhabditis briggsae AF16] Length = 297 Score = 88.9 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 89/228 (39%), Gaps = 46/228 (20%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS 77 + V GIDE GRG + GP+V AA I + G++DSK ++ KREE++EKI + Sbjct: 19 GVPCVLGIDEAGRGPVLGPMVYAAAISPMDQNAELKALGVDDSKALNEAKREEIFEKINN 78 Query: 78 S------AIISISSASHQ------------YIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 +I S S + +++ + A N+ V+ Sbjct: 79 DEEIQQIVAYAIRSLSPELISSSMLKRHKYSLNEVSHDAAIALIRDAFACNVNVVEIKVD 138 Query: 120 IDGRSIPE-------DLPCQAFAVIKGDSISLSIAAASIIAKVTRD-----RLMRIAHKK 167 G K DS+ ++AASI AKVTRD + + K Sbjct: 139 TVGPKATYQAKLERLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWEFKEENIK 198 Query: 168 YPDYGFDSHVGYP----TAKHQQV----IKEKGPSCIHRLTFRPLRNL 207 P+ GF GYP T K Q+ I G + R +++ + Sbjct: 199 VPENGF--GSGYPGDPNTKKFLQLSVHPI--FGFCSLVRASWKTASAI 242 >gi|323452074|gb|EGB07949.1| hypothetical protein AURANDRAFT_6827 [Aureococcus anophagefferens] Length = 156 Score = 88.9 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 11/164 (6%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI-SHKKREELYEKITSSA--IISIS 84 G+DEVGRG LAGPVV A L P + DSK++ + RE +Y ++ ++ +++ Sbjct: 1 GVDEVGRGCLAGPVVTCACYLPPGAEIDDLTDSKQLATEDLREAVYARLLATPGLRFALA 60 Query: 85 SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL 144 A +D+ NI +A L A+ A AL D + + + KGD+ Sbjct: 61 KAEAPVVDELNILQANLQAMRTA--------SEALCDRLAAGGERGGDLEVLDKGDASVS 112 Query: 145 SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVI 188 +I+AAS+IAKVTRDR+M YP+Y + S+ P A ++++ Sbjct: 113 AISAASVIAKVTRDRIMNALAGDYPEYDWASNKQRPVAVFREIL 156 >gi|10835820|pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii) With Mes Ligand gi|10835821|pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii) With Mes Ligand Length = 230 Score = 88.9 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 77/222 (34%), Gaps = 42/222 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELY-------- 72 + GIDE GRG + GP VV A + + G+ DSK+++ KR L Sbjct: 2 IIIGIDEAGRGPVLGPXVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGY 61 Query: 73 --------------------EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ 112 I +A ++ + ++ + Sbjct: 62 VEKRILEAEEINQLXNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKF 121 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 I+ +L + A K D+ ++AASIIAK RD ++ K Y D G Sbjct: 122 EDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDIG 181 Query: 173 FDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP+ K + +++ I R ++ + + Sbjct: 182 ----SGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRIL 219 >gi|291229986|ref|XP_002734939.1| PREDICTED: RNase H family member (rnh-2)-like [Saccoglossus kowalevskii] Length = 303 Score = 88.5 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 74/218 (33%), Gaps = 40/218 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V + G DSK +S ++REEL+ KI + Sbjct: 34 GIDEAGRGPVLGPMVYGICYCPISKNEQLAEMGFADSKTLSEEQREELFTKIYEANQVLG 93 Query: 81 ISISSASHQYIDKHNIHKATL-------------------DAIYHAVENLQVIPRSALID 121 + S I + + + + ++ Sbjct: 94 YKMEVLSPNIISNSMFRRTKCSLNTVSKDSAIKLLRLTIEEGANIKEVYVDTVGDASKYQ 153 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH----- 176 + K D+ ++AASI AKV RDR ++ ++P++ + + Sbjct: 154 AYLKELFPDLEITVTPKADAKFPIVSAASICAKVCRDRAVKSW--QFPEFD-EINETPYG 210 Query: 177 VGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP +Q + G R ++ + Sbjct: 211 SGYPNDPATKQWLSNVMEPVFGFPRFVRFSWSTADKIL 248 >gi|146103491|ref|XP_001469573.1| ribonuclease HII [Leishmania infantum] gi|134073943|emb|CAM72682.1| putative ribonuclease HII [Leishmania infantum JPCM5] gi|322503389|emb|CBZ38474.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 474 Score = 88.5 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 36/73 (49%), Positives = 45/73 (61%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I+GD SLSIAAAS +AKVTRD LM YP YGF + GYP +H + + + G Sbjct: 392 VQPIIEGDKRSLSIAAASCLAKVTRDELMNYIDALYPGYGFRENKGYPVEQHMKYVAKNG 451 Query: 193 PSCIHRLTFRPLR 205 IHR T+RP R Sbjct: 452 LCPIHRKTYRPCR 464 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 71/233 (30%), Gaps = 58/233 (24%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L F I DSK +S ++R+ ++ Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLD------------------------------ 102 IT I+S + +AT Sbjct: 196 MITGHVDFFDIASCKKFVVHHCAGDEATSLALSSKKFDSHVKLSKLPFKKLISMQTPYLI 255 Query: 103 -AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 + V S I + ++ ++ + SI A+ + + Sbjct: 256 TYHGYNSAGNYVYFWSIGIANHTYIDEYNIYNASMNTMHRSAQSIWHMLSDARFSHEAAP 315 Query: 162 RIAHKKYPDYGF---------DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 R Y F D+ Y H +++K G + F P++ Sbjct: 316 RPRSSSIAQYLFSRFCTAANHDNEKRYQVPHHLELLK--GATEY--FDFEPIQ 364 >gi|157876514|ref|XP_001686603.1| ribonuclease HII [Leishmania major strain Friedlin] gi|16930798|gb|AAL32059.1|AF441859_1 ribonuclease HIIC [Leishmania major] gi|68129678|emb|CAJ08984.1| putative ribonuclease HII [Leishmania major strain Friedlin] Length = 474 Score = 88.5 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 36/73 (49%), Positives = 45/73 (61%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I+GD SLSIAAAS +AKVTRD LM YP YGF + GYP +H + + + G Sbjct: 392 VQPIIEGDKRSLSIAAASCLAKVTRDELMNYIDALYPGYGFRDNKGYPVEQHMKYVAKNG 451 Query: 193 PSCIHRLTFRPLR 205 IHR T+RP R Sbjct: 452 LCPIHRKTYRPCR 464 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 71/233 (30%), Gaps = 58/233 (24%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L F I DSK +S ++R+ ++ Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLD------------------------------ 102 IT I+S + +AT Sbjct: 196 MITGHVDFFDIASCKKFVVHHCAGDEATSLTLSSKKLDSHVKLSKLPFKKLLSMQTPYLI 255 Query: 103 -AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 + V S I + ++ ++ + SI A+ + + Sbjct: 256 TYHGYNSAGNYVYFWSIGIANHTYIDEYNIYNASMNTMHRSAQSIWHMLSDARFSHEAAP 315 Query: 162 RIAHKKYPDYGF---------DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 R Y F D+ Y H +++K G + F P++ Sbjct: 316 RPRSSSIAQYLFSRFCTAANHDNEKRYQVPHHLELLK--GATEY--FDFEPIQ 364 >gi|156082533|ref|XP_001608751.1| ribonuclease H [Babesia bovis T2Bo] gi|154796000|gb|EDO05183.1| ribonuclease H, putative [Babesia bovis] Length = 264 Score = 88.5 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 79/218 (36%), Gaps = 40/218 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN-------IPFGINDSKKISHKKREELYEKIT---- 76 GIDE GRG + GP+V + + + G++DSKK++ R+ + + Sbjct: 6 GIDEAGRGPVLGPMVYGSFVCPIGDEYRRMLKDNIGVDDSKKLTASLRDSKFRALNGPET 65 Query: 77 -----------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 + ++ + A Y+ + + G + Sbjct: 66 PFAMCAEVITPRYISYKMLQREAYNLNNISHDSAIALIRYYISQGFNITEVYVDAVGPAA 125 Query: 126 PEDLP-------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + + K DSI ++AASI+AKV RD ++ K P+ D G Sbjct: 126 KYEAMLTQLFPKIKCVVANKADSIFPVVSAASIVAKVIRDNIIDSWFKDSPE-RVDVGSG 184 Query: 179 YP----TAK----HQQVIKEKGPSCIHRLTFRPLRNLS 208 YP T + H + G S R+++ +++ Sbjct: 185 YPGDPVTKQFLSSHLDRL--FGFSSFVRVSWSTAKSIL 220 >gi|224001680|ref|XP_002290512.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973934|gb|EED92264.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 249 Score = 88.5 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 37/218 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAII-- 81 + GIDE GRG + GP+ AA P +IP G NDSK++S +KR L+++I S I Sbjct: 1 ILGIDEAGRGPVLGPMTYAAAYWSPTATDIPEGFNDSKQLSAEKRASLFDEIKRSDSIGF 60 Query: 82 ------------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR------ 123 ++ + ++ + A +++ G Sbjct: 61 VLRVLHASEISRNMLRSEPYNLNAMSHDAAMEMIWAVLDSGVKIETAYIDTVGMPDAYRS 120 Query: 124 ---SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY----GFDSH 176 + + + K D+ +AAS++AK +RD L+ Y G + Sbjct: 121 KLERVFQGHNIEFIVEKKADAKYAPCSAASVVAKESRDTLIANWKWTETSYEPKDGRNFG 180 Query: 177 VGYPT-AKHQQVIKE-------KGPSCIHRLTFRPLRN 206 GYP+ K ++ G R ++ P + Sbjct: 181 SGYPSDPKCTTWMENNLNVDAPFGYPDFVRFSWGPAKK 218 >gi|294891483|ref|XP_002773596.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC 50983] gi|239878780|gb|EER05412.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC 50983] Length = 339 Score = 88.5 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 78/219 (35%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V A I D G NDSK+++ KR EL+E I + A Sbjct: 57 GIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFEDIHNEALKDD 116 Query: 80 ---------------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + + +++ + A + E + V G Sbjct: 117 GVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVKEVYVDTVGDP 176 Query: 125 IPEDLPC----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 K D+I +AASI AKV RDRL+ YP+ G Sbjct: 177 ERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEDISYYPEVG-- 234 Query: 175 SHVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 GY A+ + +++ R ++ + + Sbjct: 235 --SGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEI 271 >gi|168019116|ref|XP_001762091.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686808|gb|EDQ73195.1| predicted protein [Physcomitrella patens subsp. patens] Length = 307 Score = 88.1 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 75/213 (35%), Gaps = 37/213 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--AII 81 GIDE GRG + GP+V + DSK ++ KREELYE + + Sbjct: 18 GIDEAGRGPVLGPMVYGCAYCPIDQKERISTLKFADSKALTESKREELYENLKADDLMGW 77 Query: 82 SISSASHQYIDKHNIHKAT-------------------LDAIYHAVENLQVIPRSALIDG 122 ++ + + + +A ++ + + Sbjct: 78 AVDVIDPKDLSAKMLRRAKVNLNTISFESAMGLIRNTLDLGVFLTEVFVDTVGDPGKYQD 137 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD----YGFDSHVG 178 + + K DS+ ++AASI+AKVTRDR +R GF G Sbjct: 138 MLTTKFPGIRFTVSKKADSLFPIVSAASIVAKVTRDRALRDWVVDETGREVTRGF--GSG 195 Query: 179 Y-PTAKHQQVIKEK-----GPSCIHRLTFRPLR 205 Y + + +++ G + R ++ + Sbjct: 196 YPGDPETKTWLEDHVDPVFGFPSLVRFSWATCK 228 >gi|239944789|ref|ZP_04696726.1| ribonuclease HII [Streptomyces roseosporus NRRL 15998] gi|239991253|ref|ZP_04711917.1| ribonuclease HII [Streptomyces roseosporus NRRL 11379] Length = 197 Score = 88.1 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 4/163 (2%) Query: 44 AAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS-ISSASHQYIDKHNIHKATLD 102 A I P G+ DSK ++ ++R EL + S + AS Q ID + A Sbjct: 2 CAAITGLRRPPEGLTDSKLLTPRRRAELEPVLRSWVTACALGDASPQEIDDLGMTAALRL 61 Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 A A+E L V P + ++DG+ P + VIKGD +++AAAS+IAKV RDR+M Sbjct: 62 AAVRALEGLPVRPDAVILDGKHDYLGAPWKVRTVIKGDQSCIAVAAASVIAKVHRDRMMA 121 Query: 163 IA---HKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 + + FD++ GYP+ H+ ++E+GP+ HRL++ Sbjct: 122 ELGAASEDCGGFAFDANAGYPSPVHRAALEERGPTVHHRLSWS 164 >gi|302836379|ref|XP_002949750.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f. nagariensis] gi|300265109|gb|EFJ49302.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f. nagariensis] Length = 308 Score = 88.1 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 76/212 (35%), Gaps = 30/212 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF--GINDSKKISHKKREELYEKITSS----- 78 + G+DE GRG + GP+V A+ ++ G DSK ++H+ RE+L+ I ++ Sbjct: 35 ILGVDEAGRGPVLGPMVYASAFCPLSSDISGRGYADSKTLTHEAREKLFRAIDANTSVGW 94 Query: 79 -AIISISSASHQYIDKHNIHKATLDAIYHAVE---------------NLQVIPRSALIDG 122 A I + + + A + + + Sbjct: 95 VAHIMSAQHISHNMLGRDKVSLNSLAFDATCHVIRTALESGASVKQVYVDTVGDADRHSE 154 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY-PT 181 R K DS+ ++AASIIAKV RD+ + + G + GY Sbjct: 155 RLSRAFPGISFTVCPKADSLYPIVSAASIIAKVIRDKSLIDCRQALGLQG-EVGTGYPGD 213 Query: 182 AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 A +KE G + R ++ + Sbjct: 214 ATTVAWLKEHIHPVLGFPPLVRHSWETCARML 245 >gi|219851606|ref|YP_002466038.1| ribonuclease HII [Methanosphaerula palustris E1-9c] gi|219545865|gb|ACL16315.1| ribonuclease HII [Methanosphaerula palustris E1-9c] Length = 219 Score = 88.1 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 27/202 (13%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP--NNIPFGINDSKKISHKKREELYEKITSSAIIS 82 + G+DE G+GA+ GP+VVA + G+ DSK+++ KRE+LY++I S + Sbjct: 5 LICGVDEAGKGAVLGPMVVAGVASRDVSAVAALGVRDSKQLTRLKREDLYDQIRSICTTT 64 Query: 83 ISSASHQYID------KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP------ 130 ++ S ID N+ A A + + A + Sbjct: 65 VTVLSAADIDLARESATMNMIVARGHAAVISTLTPTLAYVDACDVNADRYRETVTALLEP 124 Query: 131 ---CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK-HQQ 186 CQ A + DS +AAASIIAKVTRDRL+ + G GYP+ + Sbjct: 125 AASCQVIAEHRADSTYPIVAAASIIAKVTRDRLVDALADECGQIG----SGYPSDRYTIA 180 Query: 187 VI-----KEKGPSCIHRLTFRP 203 + + P R +++ Sbjct: 181 YLSDYIRRHHAPPACARKSWKT 202 >gi|82706071|ref|XP_727229.1| ribonuclease HII [Plasmodium yoelii yoelii str. 17XNL] gi|23482972|gb|EAA18794.1| ribonuclease HII, putative [Plasmodium yoelii yoelii] Length = 307 Score = 88.1 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 78/221 (35%), Gaps = 35/221 (15%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72 + E V GIDE GRG + GP+V + + I+DSKKI+ RE+++ Sbjct: 9 LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMF 68 Query: 73 EKITSS---AIISISSASHQYI------------DKHNIHKATLDAIYHAVENLQVIPRS 117 K+ +S + Q I ++ + A + + Sbjct: 69 YKLNNSKLPFAWRVHILMPQDISAKMLKKEKYNLNEISHDTAISIIQHVLSRGCNLTEVF 128 Query: 118 ALIDGRSIPE-------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 G++ + K DS+ ++AASI AKVTRD L++ + Sbjct: 129 VDTVGKASVYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEQI 188 Query: 171 YGFDS--HVGY-PTAKHQQVIKE-----KGPSCIHRLTFRP 203 D GY + +K G I R ++ Sbjct: 189 INIDKGFGSGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWST 229 >gi|322799751|gb|EFZ20956.1| hypothetical protein SINV_11176 [Solenopsis invicta] Length = 353 Score = 88.1 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 76/218 (34%), Gaps = 41/218 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKIT---SSAI 80 G+DE GRG + GP+V + G DSK ++ KKR+E+++ I + Sbjct: 84 GVDEAGRGPVLGPMVYGISYAPLSQKQLLVDLGCADSKSLTEKKRDEIFDDICERKENIG 143 Query: 81 ISISSASHQYIDKHNIHK-------------------ATLDAIYHAVENLQVIPRSALID 121 +I + S I + A + A + + + Sbjct: 144 WAIEAISPNIISNSMYRRTKVSLNEVSMISATNLIQGAIEAGVNVAEIYVDTVGKPESYQ 203 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-----HKKYPDYGFDSH 176 R + K D+ ++AASI AKVTRD +R YG Sbjct: 204 ARLKGVFPGIKIVVAKKADATYPIVSAASICAKVTRDHAIRAWRFREGENIETQYG---- 259 Query: 177 VGYPT-AKHQQVI-----KEKGPSCIHRLTFRPLRNLS 208 GYPT ++ + + G + R ++ + Sbjct: 260 SGYPTDPVTKKWLSTNVDRVFGFPQLVRFSWSTAEQIL 297 >gi|68067767|ref|XP_675818.1| ribonuclease H1 large subunit [Plasmodium berghei strain ANKA] gi|56495218|emb|CAH97375.1| ribonuclease H1 large subunit, putative [Plasmodium berghei] Length = 288 Score = 87.7 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 78/221 (35%), Gaps = 35/221 (15%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72 + E V GIDE GRG + GP+V + + I+DSKKI+ RE+++ Sbjct: 9 LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMF 68 Query: 73 EKITSS---AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVEN 110 K+ +S + Q I I Sbjct: 69 YKLNNSKLPFAWRVHILMPQDISAKMLKRQKYNLNEISHDTAISIIQHVLNRGCNLTEVF 128 Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + + ++++ + + + K DS+ ++AASI AKVTRD L++ + Sbjct: 129 VDTVGKASVYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEHI 188 Query: 171 YGFDS--HVGY-PTAKHQQVIKE-----KGPSCIHRLTFRP 203 D GY + +K G I R ++ Sbjct: 189 INIDKGFGSGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWST 229 >gi|327311983|ref|YP_004338880.1| ribonuclease HII [Thermoproteus uzoniensis 768-20] gi|326948462|gb|AEA13568.1| ribonuclease HII [Thermoproteus uzoniensis 768-20] Length = 203 Score = 87.7 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 81/198 (40%), Gaps = 20/198 (10%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN-IPFGINDSKKISHKKREELYEKITSSA-IIS 82 VAGIDE GRG + GP+V+A + + G+ DSK++S K RE LY I SA ++ Sbjct: 2 VVAGIDEAGRGPVVGPMVLAIVAGNEKALRALGVRDSKELSRKARERLYPLILKSAECVN 61 Query: 83 ISSASHQYIDKHNIHK---------ATLDAIYHAVENLQVIPRSALIDGRSI-PEDLPCQ 132 ID+ A + V + S + + Sbjct: 62 YVVLEPHVIDEWAASHKLNLLEAEEAAKLMRLCDADVYYVDSPDPKPERFSELLSRMSGR 121 Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKEK 191 + +AAASI+AKV RDRL+ + + D+G GYP+ K ++ Sbjct: 122 RVVAMNKAERVPQVAAASIVAKVVRDRLVDMLRSEMGDFG----SGYPSDSKTISALRS- 176 Query: 192 G--PSCIHRLTFRPLRNL 207 G R ++ L+ L Sbjct: 177 GKIAVECIRHSWGTLKRL 194 >gi|297618794|ref|YP_003706899.1| ribonuclease HII [Methanococcus voltae A3] gi|297377771|gb|ADI35926.1| ribonuclease HII [Methanococcus voltae A3] Length = 264 Score = 87.7 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 86/223 (38%), Gaps = 40/223 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN-------NIPFGINDSKKISHKKREELYEKITSS 78 V G+DE GRG + GP+V+A ++L + + DSKK+S KKRE LY++I Sbjct: 19 VVGLDEAGRGPVIGPMVIAGVLLKMDNKENAKTFYDLDLKDSKKLSKKKRETLYKEIQKL 78 Query: 79 AIISISSASHQYIDKHNIHKATLDA---------------------------IYHAVENL 111 A + + + ID ++ Sbjct: 79 AKVEKVIITAKEIDAQMNIINLNKIELNGFSSIINKFYKDIYGLDENKRDSGFLTYIDAC 138 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 S ++ + A K D ++AASIIAKV RD ++ ++KY Sbjct: 139 SSNETSFSNQLKAKLINKNIDLIAEHKADDNYKIVSAASIIAKVNRDNIIDSYNEKYEAL 198 Query: 172 GFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 G+ GYP+ K ++ +++ I R ++ + L Sbjct: 199 GYTIGSGYPSDPKTKKFLRQYLEDNKELPDIVRFSWNTTKKLL 241 >gi|308159908|gb|EFO62424.1| Ribonuclease HI, large sub [Giardia lamblia P15] Length = 243 Score = 87.7 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 73/217 (33%), Gaps = 44/217 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITSS 78 + GIDE GRG + GP+V + G+ DSK +S RE +Y K+ Sbjct: 1 MIVGIDEAGRGPVCGPLVYGIAWMPAEVYQTGILEKLGVTDSKALSADAREHIYSKLHDL 60 Query: 79 AIISISSA---------------SHQYIDKHNIHKATLDAIYHAVENLQVIPRS------ 117 H+ +A +Y + ++ Sbjct: 61 PKEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFTSYEIEHVYIDLVSP 120 Query: 118 -ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + K D+ AASIIAKVTRD+ ++ P +G Sbjct: 121 ESQYATYIHELMPNIALTICAKADAKYPITGAASIIAKVTRDKHIK------PQWG---- 170 Query: 177 VGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 GYP+ K ++ + + G R ++ ++ + Sbjct: 171 SGYPSDPKTKEYLDKTCHSIYGFPTHIRHSWETIKRI 207 >gi|320168268|gb|EFW45167.1| ribonuclease H2 [Capsaspora owczarzaki ATCC 30864] Length = 385 Score = 87.7 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 81/217 (37%), Gaps = 35/217 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG + GP+V ++ P G +DSKK+ R L++ I + Sbjct: 113 GIDEAGRGPVLGPMVYGISYCPLSDDPRLRQMGFDDSKKLDEPTRRRLFDDINKANDFMG 172 Query: 83 --ISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIPRSALID 121 + S Q I + +A + + + + + + Sbjct: 173 FSVCVISPQDISSSMLRRAKYNLNALSHDTAMSLVQRALDDGVNIAKVFVDTVGTAETYQ 232 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD---YGFDSHVG 178 + + K DS+ ++AASI AKV RD ++ I P G D G Sbjct: 233 EKLSERFPGIEFKVSAKADSLFPIVSAASICAKVVRDHVLDIWQFSEPHGSTIGRDFGCG 292 Query: 179 YPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLSV 209 YP+ +Q ++ G + R ++ +N+ + Sbjct: 293 YPSDPVTKQWLQTNMDSVFGFPGVVRFSWGTCKNILI 329 >gi|268612465|pdb|3KIO|A Chain A, Mouse Rnase H2 Complex Length = 301 Score = 87.7 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 73/221 (33%), Gaps = 42/221 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELY--------- 72 V G+DE GRG + GP V A + + DSK ++ +RE L+ Sbjct: 30 VLGVDEAGRGPVLGPXVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKXEEDGDF 89 Query: 73 ----------EKITSSAIISISSASHQYIDKHN---IHKATLDAIYHAVENLQVIPRSAL 119 I++S + + + I A + + + Sbjct: 90 VGWALDVLSPNLISTSXLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGXPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGF 173 R + K DS+ ++AASI AKV RD+ + DYG Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +++ G R ++ + + Sbjct: 209 ---SGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAIL 246 >gi|126459394|ref|YP_001055672.1| ribonuclease HII [Pyrobaculum calidifontis JCM 11548] gi|126249115|gb|ABO08206.1| RNase HII [Pyrobaculum calidifontis JCM 11548] Length = 207 Score = 87.7 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 21/205 (10%) Query: 14 LEAMVREKNMWPVAG-IDEVGRGALAGPVVVAAIILDPNNIP-FGINDSKKISHKKREEL 71 + + V G +DE GRG L GP+V+A ++ D + + G+ DSK +S RE + Sbjct: 3 FPQDLLSRPYLTVIGGVDEAGRGPLVGPLVIAVVVGDSDVLLGVGVRDSKALSPGARERV 62 Query: 72 YEKITSSA----IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID------ 121 + ++ A I + + A + + Sbjct: 63 FARVLEVAECVNYIVVEPHIVDMYTSKGLLNALEIDYTAKLLATCPADVYYVDSPDVKPE 122 Query: 122 -GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 S + + +AAASI+AKV RDRL+ + ++ D+G GYP Sbjct: 123 RYGSALSMATGKRIVALNKGERVPQVAAASIVAKVVRDRLIDLLKREVGDFG----SGYP 178 Query: 181 T-AKHQQVIKEKG--PSCIHRLTFR 202 + + + +K G PS R +++ Sbjct: 179 SDPRTVEFVKR-GLVPSECIRHSWK 202 >gi|154345460|ref|XP_001568667.1| ribonuclease HII [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066009|emb|CAM43794.1| putative ribonuclease HII [Leishmania braziliensis MHOM/BR/75/M2904] Length = 474 Score = 87.7 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 36/73 (49%), Positives = 45/73 (61%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I+GD SLSIAAAS +AKVTRD LM YP YGF + GYP +H + + + G Sbjct: 392 VQPIIEGDKRSLSIAAASCLAKVTRDELMNYIGALYPGYGFGENKGYPVEQHMKYVAKNG 451 Query: 193 PSCIHRLTFRPLR 205 IHR T+RP R Sbjct: 452 LCPIHRKTYRPCR 464 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 13/69 (18%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L F I DSK +S ++R+ ++ Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVSSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195 Query: 74 KITSSAIIS 82 IT Sbjct: 196 MITGHVDFF 204 >gi|307198751|gb|EFN79554.1| Ribonuclease H2 subunit A [Harpegnathos saltator] Length = 337 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 76/219 (34%), Gaps = 42/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V + G DSK ++ KKR+E+++ I Sbjct: 66 GVDEAGRGPVLGPMVYGISYAPLSRKQLLVELGCADSKSLTEKKRDEIFDGICEHKDCIG 125 Query: 81 ISISSASHQYIDKHNIH-------------------KATLDAIYHAVENLQVIPRSALID 121 ++ + S I A + A + + + Sbjct: 126 WAVEAISPNVIANSMYRRTKVSLNETSMVSATELIKAAIEAGVNVAEVYVDTVGKPETYQ 185 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-----HKKYP-DYGFDS 175 R + K DS ++AASI AKV+RD +R +P +YG Sbjct: 186 ARLKAVFPGVKVVVAKKADSTYPIVSAASICAKVSRDHAIRAWRFREVDVAFPSEYG--- 242 Query: 176 HVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYPT ++ + G + R ++ + Sbjct: 243 -SGYPTDPVTKKWLSANVDGVFGFPQLVRFSWSTAEQIL 280 >gi|18042143|gb|AAL57850.1|AF454825_1 ribonuclease HII [Leishmania donovani] Length = 474 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 36/73 (49%), Positives = 45/73 (61%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I+GD SLSIAAAS +AKVTRD LM YP YGF + GYP +H + + + G Sbjct: 392 VQPIIEGDKRSLSIAAASCLAKVTRDELMNYIDALYPGYGFRENKGYPVEQHMKYVTKNG 451 Query: 193 PSCIHRLTFRPLR 205 IHR T+RP R Sbjct: 452 LCPIHRKTYRPCR 464 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 71/233 (30%), Gaps = 58/233 (24%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L F I DSK +S ++R+ ++ Sbjct: 136 IGCDEAGRGPLAGPVVGAAVSRIPVFSFNNEFDQLYEAPEQFQIFDSKSVSERQRDLVFA 195 Query: 74 KITSSA-IISISSASHQYIDKHNIHKATLD------------------------------ 102 IT I+S + +AT Sbjct: 196 MITGHVDFFDIASCKKFVVHHCAGDEATSLALSSKKFDSHMKLSKLPFKKLLSMQTPYLI 255 Query: 103 -AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 + V S I + ++ ++ + SI A+ + + Sbjct: 256 TYHGYNSAGNYVYFWSIGIANHTYIDEYNIYNASMNTMHRSAQSIWHMLSDARFSHEAAP 315 Query: 162 RIAHKKYPDYGF---------DSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLR 205 R Y F D+ Y H +++K G + F P++ Sbjct: 316 RPRSSSIAQYLFSRFCTAANHDNEKRYQVPHHLELLK--GATEY--FDFEPIQ 364 >gi|307188511|gb|EFN73248.1| Ribonuclease H2 subunit A [Camponotus floridanus] Length = 334 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 75/218 (34%), Gaps = 41/218 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V + G DSK ++ KKR+E+++ I Sbjct: 65 GVDEAGRGPVLGPMVYGISYAPLSRKQLLVDLGCADSKSLTEKKRDEIFDDICKHKDSIG 124 Query: 81 ISISSASHQYIDKHNIHK-------------------ATLDAIYHAVENLQVIPRSALID 121 +I + S I + A + A + + + Sbjct: 125 WAIEAISPNVIANSMYRRTKVSLNEVSMVSAIKLIQGAIEAGVNVAEIYVDTVGKPESYQ 184 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-----HKKYPDYGFDSH 176 R + K D+ ++AASI AKV+RD +R +YG Sbjct: 185 ARLKGVFPGVKIVVAKKADATYPIVSAASICAKVSRDHALRAWRFREGDSIGTEYG---- 240 Query: 177 VGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYPT + + E G + R ++ + Sbjct: 241 SGYPTDPVTKNWLSENVDAVFGFPQLVRFSWSTAEQIL 278 >gi|313609082|gb|EFR84793.1| ribonuclease HII [Listeria monocytogenes FSL F2-208] Length = 110 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 37/72 (51%), Positives = 53/72 (73%) Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPS 194 ++IKGD+ S+SIAAASIIAKVTRDRLM++ + YP Y F +++GY T KH + G Sbjct: 30 SLIKGDTKSISIAAASIIAKVTRDRLMQMYDETYPGYDFANNMGYGTKKHLHGLDTIGIC 89 Query: 195 CIHRLTFRPLRN 206 IHR++F P+++ Sbjct: 90 PIHRISFAPVKD 101 >gi|308509890|ref|XP_003117128.1| CRE-RNH-2 protein [Caenorhabditis remanei] gi|308242042|gb|EFO85994.1| CRE-RNH-2 protein [Caenorhabditis remanei] Length = 323 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 84/228 (36%), Gaps = 40/228 (17%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK 74 + V GIDE GRG + GP+V AA I + G++DSK ++ KREE+++K Sbjct: 42 FADGVPCVLGIDEAGRGPVLGPMVYAAAISPLDQNTELKNLGVDDSKALNEAKREEIFDK 101 Query: 75 ------ITSSAIISISSASHQ------------YIDKHNIHKATLDAIYHAVENLQVIPR 116 I +I S S + +++ + A N+ V+ Sbjct: 102 MNNDEEIQQVVAYAIRSLSPELISASMLKRHKYSLNEVSHDAAIALIKDAFACNVNVVEI 161 Query: 117 SALIDGRSIPE-------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 G K DS+ ++AASI AKVTRD +R K Sbjct: 162 KVDTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWQFKEK 221 Query: 170 DYGFDSHVGYPT-----AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 + GY + ++ ++ G + R +++ + Sbjct: 222 GIRIPEN-GYGSGYPGDPNTKKFLQLSVDPIFGFCSLVRASWKTASAI 268 >gi|222480377|ref|YP_002566614.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239] gi|222453279|gb|ACM57544.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239] Length = 234 Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 76/217 (35%), Gaps = 41/217 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DE G+G + GP+V AA++ DP +P ++DSK+I+ +RE + +I ++ +++ A Sbjct: 4 GVDEAGKGPVLGPMVAAAVLADPVALPADVDDSKRIAPSRRESIDAEIRATDAVAVGVAF 63 Query: 88 HQ----------------------YIDKHNIHKATLDAIYHAVENLQVIPRSALI----- 120 + + A V A Sbjct: 64 VEPAEIDRPDTDMNTLTVRGQARAVRAALHGVVAVDLDEPIRVVADAGDTSEARFARRLG 123 Query: 121 -------DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + E A D + AAS++AKV RD M YP Y Sbjct: 124 ESVADPDSDTTDTEHPEVDVSAAHGADEDDPMVGAASVVAKVARDERMADIDADYPAYD- 182 Query: 174 DSHVGYPT-AKHQQVIK----EKG-PSCIHRLTFRPL 204 GYP+ + ++ + G R ++ Sbjct: 183 GLGSGYPSDPATRNFLRAYVNDHGNVPGCARRSWATC 219 >gi|71747330|ref|XP_822720.1| ribonuclease HII [Trypanosoma brucei TREU927] gi|70832388|gb|EAN77892.1| ribonuclease HII, putative [Trypanosoma brucei] Length = 477 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 44/72 (61%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I+GD SL+IAAAS +AKV+RD +M YP Y F + GYP H + +K+ G Sbjct: 389 VQPIIEGDKRSLTIAAASCLAKVSRDEIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHG 448 Query: 193 PSCIHRLTFRPL 204 S IHR ++RP Sbjct: 449 LSSIHRRSYRPC 460 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 13/62 (20%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L + F I DSK +S +R+ +Y Sbjct: 134 IGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQRKVVYN 193 Query: 74 KI 75 I Sbjct: 194 NI 195 >gi|261332495|emb|CBH15490.1| ribonuclease HII, putative [Trypanosoma brucei gambiense DAL972] Length = 477 Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 44/72 (61%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I+GD SL+IAAAS +AKV+RD +M YP Y F + GYP H + +K+ G Sbjct: 389 VQPIIEGDKRSLTIAAASCLAKVSRDEIMDYLDPLYPKYHFAENKGYPVDHHMRAVKKHG 448 Query: 193 PSCIHRLTFRPL 204 S IHR ++RP Sbjct: 449 LSSIHRRSYRPC 460 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 13/62 (20%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L + F I DSK +S +R+ +Y Sbjct: 134 IGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQRKVVYN 193 Query: 74 KI 75 I Sbjct: 194 NI 195 >gi|315427583|dbj|BAJ49182.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum] Length = 212 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 29/206 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 G+DE GRG + GP+VVAA+ + + +P G+ DSK +S ++REE++EK+ +S + Sbjct: 3 CGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRVG 62 Query: 83 ISSASHQYIDKHNIHK----------------ATLDAIYHAVENLQVIPRSALIDGRSIP 126 S + I A + Sbjct: 63 YMLVSPRRISSCLRVNGGDGLNDLEYGVMAELARSFRPRILFVDSPDRDVRRARRRLLEK 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQ 185 + +++GD + +AAAS++AKV RDR + + ++ D+G GYP+ K + Sbjct: 123 LGVEMDVRCMVRGDRRHVLVAAASVVAKVVRDRKVAMLRRRLGDFG----SGYPSDPKTR 178 Query: 186 QV-IKEKG---PSCIHRLTFRPLRNL 207 + ++ G R+ + L NL Sbjct: 179 KWLLENLGQAAIKPYIRVGWATLENL 204 >gi|266625485|ref|ZP_06118420.1| ribonuclease HII [Clostridium hathewayi DSM 13479] gi|288862611|gb|EFC94909.1| ribonuclease HII [Clostridium hathewayi DSM 13479] Length = 78 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 2/60 (3%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 E + V GIDE GRG LAGPVV A+IL + +NDSKK+S K+REEL+ Sbjct: 21 SYERQYGD--HILVCGIDEAGRGPLAGPVVAGAVILPGDCEILFLNDSKKLSEKRREELF 78 >gi|37362282|gb|AAQ91269.1| ribonuclease H2, large subunit [Danio rerio] gi|220678488|emb|CAP09311.2| novel protein similar to ribonuclease H2, large subunit (RNASEH2A, zgc:56307) [Danio rerio] Length = 307 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 73/219 (33%), Gaps = 42/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS---SAI 80 GIDE GRG + GP+V + + DSK ++ +RE L+ K+ Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKSFVG 91 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIPRSALID 121 ++ S I + +A + + + + + + Sbjct: 92 WALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKYQ 151 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFDS 175 + + K DS+ ++AASI AKV RD + DYG Sbjct: 152 DKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYG--- 208 Query: 176 HVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + + + G R ++ + L Sbjct: 209 -SGYPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLL 246 >gi|28374439|gb|AAH46061.1| Ribonuclease H2, subunit A [Danio rerio] Length = 307 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 73/219 (33%), Gaps = 42/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS---SAI 80 GIDE GRG + GP+V + + DSK ++ +RE L+ K+ Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKSFVG 91 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIPRSALID 121 ++ S I + +A + + + + + + Sbjct: 92 WALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKYQ 151 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFDS 175 + + K DS+ ++AASI AKV RD + DYG Sbjct: 152 DKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYG--- 208 Query: 176 HVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + + + G R ++ + L Sbjct: 209 -SGYPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLL 246 >gi|48762662|ref|NP_956520.2| ribonuclease H2 subunit A [Danio rerio] gi|47938809|gb|AAH71375.1| Ribonuclease H2, subunit A [Danio rerio] Length = 307 Score = 86.6 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 73/219 (33%), Gaps = 42/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS---SAI 80 GIDE GRG + GP+V + + DSK ++ +RE L+ K+ Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKSFVG 91 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIPRSALID 121 ++ S I + +A + + + + + + Sbjct: 92 WALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAEKYQ 151 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFDS 175 + + K DS+ ++AASI AKV RD + DYG Sbjct: 152 DKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYG--- 208 Query: 176 HVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + + + G R ++ + L Sbjct: 209 -SGYPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLL 246 >gi|159118024|ref|XP_001709231.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803] gi|157437347|gb|EDO81557.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803] Length = 243 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 74/217 (34%), Gaps = 44/217 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITSS 78 + GIDE GRG + GP+V + G+ DSK +S RE +Y ++ Sbjct: 1 MIVGIDEAGRGPVCGPLVYGIAWMPAEVYQTGILEKLGVTDSKALSANTREHIYNRLQDL 60 Query: 79 AIISISSA---------------SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 H+ +A +Y + ++ + G Sbjct: 61 PKEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFISHEIEHVYIDLVGP 120 Query: 124 SIPEDLPCQAFA-------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + K D+ AASI+AKV RDR ++ P +G Sbjct: 121 ESQYAAYIRELMPSIALTICAKADAKYPITGAASIVAKVIRDRNIK------PQWG---- 170 Query: 177 VGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 GYP+ K ++ + + G R ++ ++ + Sbjct: 171 SGYPSDPKTKKYLDKTCHGIYGFPTHIRHSWETIKRI 207 >gi|297703733|ref|XP_002828781.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A-like [Pongo abelii] Length = 313 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 75/234 (32%), Gaps = 55/234 (23%) Query: 26 VAGIDEVGRGALA-------------GPVVVAAIILD----PNNIPFGINDSKKISHKKR 68 V G+DE GRG L GP+V A + + DSK + +R Sbjct: 30 VLGVDEAGRGPLIGPRLPENXHPSSPGPMVYAICYCPLSRLADLEALKVADSKTLLESER 89 Query: 69 EELYEKI--TSSAIISISSASHQYIDKHN-------------------IHKATLDAIYHA 107 E L+ K+ ++ S I I A + Sbjct: 90 ERLFAKMEDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVT 149 Query: 108 VENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA--- 164 + + R + K D++ ++AASI AKV RD+ ++ Sbjct: 150 QVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFV 209 Query: 165 ----HKKYPDYGFDSHVGYP-TAKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 Y DYG GYP K + +KE G R ++R + + Sbjct: 210 EKLQDSXYTDYG----SGYPQDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTIL 259 >gi|300710295|ref|YP_003736109.1| ribonuclease HII [Halalkalicoccus jeotgali B3] gi|299123978|gb|ADJ14317.1| ribonuclease HII [Halalkalicoccus jeotgali B3] Length = 214 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 26/198 (13%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKR----------EELYEKIT 76 GIDE G+G + GP++ A + + ++ P GI+DSK+++ KR E + I Sbjct: 5 GIDEAGKGPVLGPMIAACVCVPDESVLPEGIDDSKRLTPAKRGRLSEALLGDEAIGIGIA 64 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-----DLPC 131 + + I + A + + + GR + Sbjct: 65 AVSPDRIDTPETDMNSLTVAAHAEAASEVVEPGMTGICDAGDVDAGRFVHRVGQRLPEGV 124 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE 190 D + AAS++AKV RDR + Y + G GYP+ ++ + E Sbjct: 125 SLSGEHGADEHHAIVGAASVVAKVERDRRVAALEAAYGEVG----SGYPSDPTTREFLAE 180 Query: 191 K-----GPSCIHRLTFRP 203 R +++ Sbjct: 181 YVAENGELPECARASWKT 198 >gi|327281022|ref|XP_003225249.1| PREDICTED: ribonuclease H2 subunit A-like [Anolis carolinensis] Length = 300 Score = 86.2 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 78/219 (35%), Gaps = 42/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SSAI 80 GIDE GRG + GP+V + + DSK ++ +RE+L+EK+ Sbjct: 32 GIDEAGRGPVLGPMVYGICYCPVARQGDLEAIKVADSKTLTEAQREQLFEKLDAAKDFVG 91 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIPRSALID 121 ++ S +I +A + + + + + + Sbjct: 92 WALHILSPNFISTSMQRRAKYNLNALSHDTAIGLIQHALDSGVQVAEVFVDTVGPAEKYQ 151 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGFDS 175 + + + K DS+ ++AASI AKV RDR + DYG Sbjct: 152 EKLKQQFPGLEVTVKPKADSLFPVVSAASICAKVARDRVVKNWKFVEALENVDSDYG--- 208 Query: 176 HVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP K ++ + + G R ++ + + Sbjct: 209 -SGYPNDPKTKEWLTQCLDPVFGFPQFVRFSWSTAQVIL 246 >gi|297527144|ref|YP_003669168.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710] gi|297256060|gb|ADI32269.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710] Length = 244 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 83/207 (40%), Gaps = 31/207 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81 G+DE GRG L G +V+A +I+ N I G+ DSK+++ R L +KI A Sbjct: 10 IGVDEAGRGPLIGDLVIAILIISRNKIEKLISIGVKDSKQLTRHTRLSLAKKILKLADSA 69 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF------- 134 I S + ID +NI++ + I A++ + I E + + Sbjct: 70 LIIYISPEIIDSYNINRIIAEKIILALKLFSPVINHYRTASIYIDEIKGYKNYILANLSK 129 Query: 135 ---------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184 D ++AASI+AK RD+ + K Y + G GYP+ Sbjct: 130 YINNIEEYVMEPNADQKYPVVSAASILAKTIRDKNIDFLKKIYGNLG----SGYPSDRVT 185 Query: 185 QQV-IKEK----GPSCIHRLTFRPLRN 206 IK P I R T+ LR Sbjct: 186 INWLIKTYNGEKEPPLIIRRTWSTLRK 212 >gi|168070408|ref|XP_001786800.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660445|gb|EDQ48386.1| predicted protein [Physcomitrella patens subsp. patens] Length = 240 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI-AHKKYPDYGFDS 175 + + DL A+I GD++S SI AASI+AKVTRDRL + YP YG Sbjct: 12 PCHLLVDAETVDLDFPQTAIIHGDAVSQSIGAASILAKVTRDRLCKEIWDLHYPAYGIAV 71 Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTF 201 H GY T H+ ++ E GPS +HR +F Sbjct: 72 HKGYATRHHRSMLIEHGPSPLHRRSF 97 >gi|322511078|gb|ADX06391.1| putative ribonuclease HII [Organic Lake phycodnavirus 2] Length = 120 Score = 85.8 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 91 IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAAS 150 + + +N+++ +D ++KGDSI I+AAS Sbjct: 1 MKSMQESVCGVLEHCCTEDNVKIYVDGNHFK-PCFYKDKWIPFECIVKGDSIHKCISAAS 59 Query: 151 IIAKVTRDRLMRIAHKKYP----DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFR 202 I+AKV RD +R K+ P YG ++ GY T KH + IK+ G S HR +F+ Sbjct: 60 ILAKVERDEYIRTLCKEQPILNERYGLLNNKGYGTKKHVEGIKQYGYSEYHRKSFK 115 >gi|328872786|gb|EGG21153.1| ribonuclease H2 subunit A [Dictyostelium fasciculatum] Length = 303 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 38/227 (16%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI 75 ++ + GIDE GRG + GP+V A NDSKK++ ++RE+L+ KI Sbjct: 38 DRKQSYIMGIDEAGRGPVLGPLVYGACFAPLKEIETIKKMKFNDSKKLTEQQREQLFIKI 97 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI--------------- 120 S + + + + V + + Sbjct: 98 IKSPDVIGFVSDINTPEYLSEKMCAKMPTSLDVISHGSAFKMIRTVLDRGYNVQELYLDT 157 Query: 121 --------DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH-KKYPDY 171 I + K DSI ++A SI+AKV RD L+ Y Sbjct: 158 VGPALKYQTKLQIAFPSIGKIVVSSKADSIYPIVSAGSIVAKVLRDVLIANTSFAAYQGV 217 Query: 172 GF--DSHVGYPT-AKHQQVIKEK-----GPSC-IHRLTFR-PLRNLS 208 D GYP+ ++ ++E G I R +++ + NL+ Sbjct: 218 EISRDFGSGYPSDPSTKKWLREHRDNVFGYPDNIIRFSWKTTINNLA 264 >gi|84999888|ref|XP_954665.1| ribonuclease h1 large subunit [Theileria annulata] gi|65305660|emb|CAI73985.1| ribonuclease h1 large subunit, putative [Theileria annulata] Length = 277 Score = 85.8 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 75/222 (33%), Gaps = 43/222 (19%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN-------IPFGINDSKKISHKKREELYEKIT- 76 + GIDE GRG + GP+V + ++DSKK+S RE + ++ Sbjct: 24 VILGIDEAGRGPVLGPMVYGGFFCTKGDNCNSILKNKIKVDDSKKLSESMRENKFYQLND 83 Query: 77 --------------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS----- 117 + +++ + A + + Sbjct: 84 PDHPFGVVAEVITPQYISYKMLQREKYNLNEISHDTAISIIRHVLSHGYNLKEVYIDAVG 143 Query: 118 --ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD- 174 + + Q K DSI +++AASI+AKV RD +++ + F+ Sbjct: 144 TVNKYESKLSKMFPKIQFSVREKADSIYPTVSAASIVAKVIRDNIIKTW-----KFDFEV 198 Query: 175 --SHVGYP----TAK--HQQVIKEKGPSCIHRLTFRPLRNLS 208 GYP T + + K G I R ++ NL Sbjct: 199 ENIGSGYPGDPYTKDFLTKNMDKIFGFPDIVRFSWSTASNLL 240 >gi|294464821|gb|ADE77916.1| unknown [Picea sitchensis] Length = 293 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 76/230 (33%), Gaps = 41/230 (17%) Query: 8 ERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKI 63 P + E + GIDE GRG + GP+V + + DSK + Sbjct: 5 PLPDWASE--------PCIMGIDEAGRGPVLGPMVYGCLYCSASYQETLATLKFADSKTL 56 Query: 64 SHKKREELYEKITSSAI--ISISSASHQYIDKHN------------IHKATLDAIYHAVE 109 +KREEL+E + + A ++ + + A + Sbjct: 57 KEEKREELFESLKADASLGWAVDIIDPRELSAKMLQRIKVNLNTISHDAAMGLVNTVLSK 116 Query: 110 NLQVIPRSALIDGRSIPE-------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 + + G + + K DS+ ++ ASI+AKVTRD +R Sbjct: 117 GILLSEVYVDTVGDADKYRIKLEEKFPGIKFVVSKKADSLYPIVSGASIVAKVTRDNALR 176 Query: 163 IAHKKYPDYGFDSH--VGY-PTAKHQQVIKE-----KGPSCIHRLTFRPL 204 G + GY + + ++E G + R ++ Sbjct: 177 GWVLDETAEGISRNFGSGYPGDPETKAWLEENKHPVFGFPTLVRFSWATC 226 >gi|300702211|ref|XP_002995135.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01] gi|239603960|gb|EEQ81464.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01] Length = 235 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 90/219 (41%), Gaps = 29/219 (13%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREE 70 + + +++ + + G+DE GRG + G +V ++ + +N+P + DSK ++ K R + Sbjct: 5 NLSF-SSLKKSDKRVIVGVDEAGRGPVIGYMVYCVMVFEVDNVPKNLKDSKMLTEKMRND 63 Query: 71 LYEKITSSAII-------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 ++ + I++ ++ ++I T+ + V N ID Sbjct: 64 IFVTLKDYNYAYTALHPSYITTKMLSNVNLNDISWNTVLNLLKLVCNAYTNIEGIFIDAI 123 Query: 124 SIPE--------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 + ++ + K DS ++ ASI+AKVTRD L+ + + Sbjct: 124 GTCDKLKEFLELNIKHKCTVESKADSKYPVVSGASIVAKVTRDDLLSKFNISF------- 176 Query: 176 HVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP+ ++ + + G R T+ +N+ Sbjct: 177 GSGYPSDPVTKKWLTKEVNYIFGWGKSVRYTWNTAKNIL 215 >gi|17536263|ref|NP_495796.1| RNase H family member (rnh-2) [Caenorhabditis elegans] gi|11387113|sp|Q9U6P6|RNH2A_CAEEL RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|6010657|gb|AAF01208.1|AF181619_1 putative ribonuclease H2 large subunit [Caenorhabditis elegans] gi|15718212|emb|CAC70103.1| C. elegans protein T13H5.7, confirmed by transcript evidence [Caenorhabditis elegans] Length = 297 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 84/229 (36%), Gaps = 46/229 (20%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYE--- 73 + V GIDE GRG + GP+V AA I + G++DSK ++ KREE++ Sbjct: 18 NGIPCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDDSKALNEAKREEIFNKMN 77 Query: 74 ---KITSSAIISISSASHQ------------YIDKHNIHKATLDAIYHAVENLQVIPRSA 118 I ++ S + +++ + A N+ V+ Sbjct: 78 EDEDIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKV 137 Query: 119 LIDGRSIPE-------DLPCQAFAVIKGDSISLSIAAASIIAKVTRD-----RLMRIAHK 166 G K DS+ ++AASI AKVTRD R + Sbjct: 138 DTVGPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNI 197 Query: 167 KYP--DYGFDSHVGYP----TAKHQQVIKE--KGPSCIHRLTFRPLRNL 207 K P YG GYP T K Q+ E G + R +++ + Sbjct: 198 KVPDAGYG----SGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTI 242 >gi|328849346|gb|EGF98528.1| hypothetical protein MELLADRAFT_46031 [Melampsora larici-populina 98AG31] Length = 279 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 73/231 (31%), Gaps = 50/231 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA---I 80 GIDE GRG + GP+V AA + G DSK ++H+KR L+E I S+ Sbjct: 2 GIDEAGRGPVLGPMVYAASFCPVDFSEELKSLGFADSKTLTHQKRCNLFESIVQSSGKIQ 61 Query: 81 ISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSALID 121 ++ S I I A + + Sbjct: 62 WNVKVMSPSDISMGMSRRSPYNLNAQAFDATVQIIQAALDHQYILQHIYVDTLGPPKTHQ 121 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA----------------- 164 K DSI ++AASI+AKVTRD ++ Sbjct: 122 LNLQKAFPNLHFTVCSKADSIYPIVSAASIVAKVTRDAIVENWMFVELSIGKRKRLEESQ 181 Query: 165 -HKKYPDYGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 + + GYP +K G + R ++ ++ L Sbjct: 182 DDDDDSIWNLPTGSGYPADPNTTAWLKSHFDKVFGYPQLARFSWATVKTLL 232 >gi|256811096|ref|YP_003128465.1| ribonuclease HII [Methanocaldococcus fervens AG86] gi|256794296|gb|ACV24965.1| ribonuclease HII [Methanocaldococcus fervens AG86] Length = 230 Score = 85.4 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 78/222 (35%), Gaps = 42/222 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELY-------- 72 + GIDE GRG + GP+V+ + + + G+ DSK+++ KR L Sbjct: 2 MIIGIDEAGRGPVLGPMVICGYAIKKDKEEDLKKLGVKDSKELTKNKRAYLKKLLENFGC 61 Query: 73 --------------------EKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ 112 +I +A ++ + ++ + Sbjct: 62 SEKLILEAEKINNLMDTINLNEIEINAFSEVAKNLIKKLNIKDEEVEIYLDACSTNTKKF 121 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 I +L + A K DS ++AASIIAK RD ++ K Y D G Sbjct: 122 ESDFKEKIRDVIEERNLKIKIIAEHKADSKYPVVSAASIIAKAERDEIIENYKKIYGDIG 181 Query: 173 FDSHVGYPTA-KHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP+ K + +++ I R ++ + + Sbjct: 182 ----SGYPSDSKTIKFLEDYFKKHKKLPEITRTKWKTCQRIL 219 >gi|253748461|gb|EET02569.1| Ribonuclease HI, large sub [Giardia intestinalis ATCC 50581] Length = 243 Score = 85.4 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 75/217 (34%), Gaps = 44/217 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITSS 78 + GIDE GRG + GP+V + G+NDSK +S RE +YE++ + Sbjct: 1 MIVGIDEAGRGPVCGPLVYGIAWMPAKVYQTGILEKLGVNDSKALSADTREYIYEQLHAL 60 Query: 79 AIISISSASH---------------QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + + +A +Y + ++ + Sbjct: 61 PKDDFGCNTAVISADQISRAMLAPRKTSLNLLSFEAARSLLYQVFTSYEIEHVYIDLVSP 120 Query: 124 SIPEDLPCQAFA-------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + K D AASI+AKVTRDR ++ +G Sbjct: 121 ESQYAAYIRELMPNLALTICAKADGKYPITGAASIVAKVTRDRHIKA------QWG---- 170 Query: 177 VGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 GYP+ K ++ + + G R ++ ++ + Sbjct: 171 SGYPSDPKTKEYLDKACHSIYGFPAHIRHSWETVKRI 207 >gi|312208153|pdb|3P56|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key Interaction Interfaces Relevant To Enzyme Function And Human Disease gi|312208156|pdb|3P56|D Chain D, The Structure Of The Human Rnase H2 Complex Defines Key Interaction Interfaces Relevant To Enzyme Function And Human Disease Length = 299 Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 72/220 (32%), Gaps = 41/220 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSA 79 V G+ E GRG + GP+V A + + DSK + +RE L+ K+ T Sbjct: 30 VLGVAEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFV 89 Query: 80 IISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSALI 120 ++ S I I A + + + Sbjct: 90 GWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETY 149 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFD 174 R + K ++ ++AASI AKV RD + + DYG Sbjct: 150 QARLQQSFPGIEVTVKAKAAALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG-- 207 Query: 175 SHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 GYP K + +KE G R ++R + + Sbjct: 208 --SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTIL 245 >gi|260781395|ref|XP_002585798.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae] gi|229270848|gb|EEN41809.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae] Length = 301 Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 36/224 (16%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI- 75 K GIDE GRG + GP+V G DSK ++ ++RE+L+E I Sbjct: 25 KGEPCCLGIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIA 84 Query: 76 --TSSAIISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVI 114 +I + I + ++ + + + + + Sbjct: 85 GAGEFMGWTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTV 144 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR----LMRIAHKKYPD 170 + + K D+ ++AASI AKV RDR K Sbjct: 145 GDATKYQDKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVKGWTFFEEKDGNS 204 Query: 171 YGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP+ + ++ + G R ++ + Sbjct: 205 ISRKFGSGYPSDPETKKWLASMVEPVFGFPQFVRFSWSTASKIL 248 >gi|260794677|ref|XP_002592334.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae] gi|229277552|gb|EEN48345.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae] Length = 303 Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 36/224 (16%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI- 75 K GIDE GRG + GP+V G DSK ++ ++RE+L+E I Sbjct: 25 KGEPCCLGIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIA 84 Query: 76 --TSSAIISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVI 114 +I + I + ++ + + + + + Sbjct: 85 GAGEFMGWTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTV 144 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR----LMRIAHKKYPD 170 + + K D+ ++AASI AKV RDR K Sbjct: 145 GDATKYQDKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVKGWTFFEEKDGNT 204 Query: 171 YGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP+ + ++ + G R ++ + Sbjct: 205 ISRKFGSGYPSDPETKKWLASMVEPVFGFPQFVRFSWSTASKIL 248 >gi|145636491|ref|ZP_01792159.1| ribonuclease HII [Haemophilus influenzae PittHH] gi|145270316|gb|EDK10251.1| ribonuclease HII [Haemophilus influenzae PittHH] Length = 57 Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 35/54 (64%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELY 72 + +AG+DEVGRG L G VV AA+ILDP+N G+ DSKK+S KKR Sbjct: 4 YPQGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLADSKKLSEKKRLSPC 57 >gi|42601730|gb|AAS21614.1| ribonuclease HII [Leishmania panamensis] Length = 267 Score = 84.7 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 36/73 (49%), Positives = 45/73 (61%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I+GD SLSIAAAS +AKVTRD LM YP YGF + GYP +H + + + G Sbjct: 185 VQPIIEGDKRSLSIAAASCLAKVTRDELMNYIGALYPGYGFGENKGYPVEQHMKYVAKNG 244 Query: 193 PSCIHRLTFRPLR 205 IHR T+RP R Sbjct: 245 LCPIHRKTYRPCR 257 >gi|225464176|ref|XP_002269852.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] Length = 278 Score = 84.7 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 14/191 (7%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI--TSSAII 81 GIDE GRG + GP+V + + DSK + +KREEL+E + S Sbjct: 18 GIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESIGW 77 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 ++ + + K + + + + + + K DS Sbjct: 78 AVDVIDPWELSAKMLKKVLNMGVLLTEVYVDTVGDAEKYRIKLSERFPAVKFVVAKKADS 137 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGY-PTAKHQQVIKEK-----GP 193 + ++ ASI+AKVTRDR +R + GY + ++ G Sbjct: 138 LYPVVSGASIVAKVTRDRALRDWVLVETAENMHRNFGSGYPGDPVTKSWLQHHKHSVFGF 197 Query: 194 SCIHRLTFRPL 204 + R ++ Sbjct: 198 PTLVRFSWGTC 208 >gi|118431079|ref|NP_147280.2| ribonuclease HII [Aeropyrum pernix K1] gi|150421651|sp|Q9YET5|RNH2_AERPE RecName: Full=Ribonuclease HII; Short=RNase HII gi|116062405|dbj|BAA79461.2| ribonuclease HII [Aeropyrum pernix K1] Length = 225 Score = 84.7 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 27/209 (12%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS 78 M V G+DE GRG+L G +VVA ++ G+ DSK++S R ELY +I+ Sbjct: 1 MGIVVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSLGVRDSKQLSPAARVELYREISGV 60 Query: 79 AIISISSASHQYIDKHNIH----KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC--- 131 ++ + ID NI+ KA + + V L V P ++D + L Sbjct: 61 GFFTVEAIRPWEIDGENINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDVQGLRLALT 120 Query: 132 -------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AK 183 K DS ++AASI+AKV RD +++ + Y GYP+ + Sbjct: 121 RLGIEPRSILVEEKADSRYPVVSAASIVAKVVRDARLQVLRRMYGV----RGSGYPSDPE 176 Query: 184 HQQVIKE---KG-PSCIHRLTFRPLRNLS 208 ++ ++E +G + R T+ +R L Sbjct: 177 TREWVREVFARGEAPRVIRYTWSTVRKLG 205 >gi|5825611|gb|AAD53318.1|AF179372_1 ribonuclease HII [Trypanosoma brucei rhodesiense] Length = 377 Score = 84.7 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 41/93 (44%) Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 + + + C + IAAAS +AKV+RD +M YP Y Sbjct: 268 GHTAPYETVSVFTDVQTGGCVQPIIEGDKRSLTIIAAASCLAKVSRDEIMDYLDPLYPKY 327 Query: 172 GFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPL 204 F + GYP H + +K+ G S IHR ++RP Sbjct: 328 HFAENKGYPVDHHMRAVKKHGLSSIHRRSYRPC 360 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 13/62 (20%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ L + F I DSK +S +R+ +Y Sbjct: 33 IGCDEAGRGPLAGPVVGAAVCRIPRSSFNNDLKALYDADEEFQIFDSKSVSETQRKVVYN 92 Query: 74 KI 75 I Sbjct: 93 NI 94 >gi|193709059|ref|XP_001946925.1| PREDICTED: ribonuclease H2 subunit A-like [Acyrthosiphon pisum] Length = 312 Score = 84.7 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 37/230 (16%) Query: 11 HFELEAMVREKNM--WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKIS 64 +E+ + E + GIDE GRG + GP+V +N G DSK +S Sbjct: 26 DVRIESDLPESTTTEKCILGIDEAGRGPVLGPMVYGTSYCSVDNQAILKTLGCADSKVLS 85 Query: 65 HKKREELYEKITSSAI---ISISSASHQYIDKHNIHKATL-------------------D 102 + R+++++ IT + ++ S I + + Sbjct: 86 EQARDDIFDGITKQSEILGWAVHIISPTTISNCSFRRQKCSLNEISHNAAIGLIQRVLDR 145 Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 + + + + + + K DS+ ++AASI AKVTRD ++ Sbjct: 146 GVNICEVFVDTVGPPEKYQEKLLSIFPQLKITVSKKADSLFPIVSAASICAKVTRDAALK 205 Query: 163 IAH-KKYPDYGFDSH--VGYPT-AKHQQVIKE-----KGPSCIHRLTFRP 203 + P DS+ GYP ++ +K+ G I R ++ Sbjct: 206 NWKFIERPGEDIDSNWGSGYPNDPVTKEYLKKNIDPVFGFPSIVRFSWST 255 >gi|312067297|ref|XP_003136676.1| ribonuclease HI large subunit [Loa loa] gi|307768160|gb|EFO27394.1| ribonuclease HI large subunit [Loa loa] Length = 303 Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 82/221 (37%), Gaps = 49/221 (22%) Query: 26 VAGIDEVGRGALAGPVV-VAAIILDPNNIPF---GINDSKKISHKKREELYEKITSSAII 81 V GIDE GRG + GP+V A+ L N G++DSK ++ KRE+++E++ + Sbjct: 31 VVGIDEAGRGPVLGPMVYACAVTLVNNENILLEMGVDDSKVLTEAKREKIFERMEGDNMS 90 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL---------------------- 119 + +H I I A L ++ L + L Sbjct: 91 ELFGYAHCSISAQMISAAMLGRTKCSLNKLSHDCATELLKLAIDNNINVVEVYVDTVGPK 150 Query: 120 --IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP-------- 169 + Q K D+ ++AASI+AKV RDR +R +P Sbjct: 151 GPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIVAKVKRDRALRNW--TFPEGIINVPP 208 Query: 170 -DYGFDSHVGYP----TAKH-QQVIKE-KGPSCIHRLTFRP 203 YG GYP T I G + R +++ Sbjct: 209 NGYG----SGYPGDPNTKNFLLGAIDHVFGYPNLVRFSWKT 245 >gi|156542709|ref|XP_001603515.1| PREDICTED: similar to ENSANGP00000022231 [Nasonia vitripennis] Length = 350 Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 75/217 (34%), Gaps = 40/217 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS---AI 80 G+DE GRG + GP+V + G DSK ++ +KR+ +++KI + Sbjct: 82 GVDEAGRGPVLGPMVYGIAYAPLSQKKLLVDMGCADSKSLTEEKRDTIFDKICDNGDKMG 141 Query: 81 ISISSASHQYIDKHNIH-------------------KATLDAIYHAVENLQVIPRSALID 121 ++ + S YI +A ++ A + + + Sbjct: 142 YAVDAISPNYIANCMYRRTKTSLNEVSMNSAISLIKQAIDSGVFVAEIYVDTVGKPEKYQ 201 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD----RLMRIAHKKYPDYGFDSHV 177 + + K DS ++AASI AKV+RD + +YG Sbjct: 202 AKLEGIFPGIKIVVAKKADSTYPIVSAASICAKVSRDHALRAWQFRETENESEYG----S 257 Query: 178 GYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP + + G + R ++ + Sbjct: 258 GYPNDPVTKSWLSSNVDPIFGFPQLVRFSWSTAEKIL 294 >gi|169859580|ref|XP_001836428.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130] gi|116502486|gb|EAU85381.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130] Length = 308 Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 70/240 (29%), Gaps = 38/240 (15%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGIND 59 S P + + + + G+DE GRG + GP+V G D Sbjct: 20 PSTPLTESYTYHSPLPTAPGPYILGVDEAGRGPVLGPLVYGVAYCPVAYKETLEELGFAD 79 Query: 60 SKKISHKKR--------------EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIY 105 SK ++ R I AI S AT+ I Sbjct: 80 SKTLTADTRSSLISTLCSDPSNLGWSVRVIAPQAISSGMLKKPPTNLNKQSQDATIGLIR 139 Query: 106 HAVE--------NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157 ++ + + ++ + K DS + AAS+ AKVTR Sbjct: 140 QVIDKGINVTEVYVDALGNTSTYEAYLSSLFPGIDFTVANKADSKFKIVGAASVAAKVTR 199 Query: 158 DRLMRIA----HKKYPDYGFDS--HVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLR 205 D + + GYP+ Q +K G I R ++ ++ Sbjct: 200 DVCIEEWVFEEDGGNAKSKWSKALGSGYPSDPNTQAWLKNAVDPVFGFPKIVRFSWSTVK 259 >gi|332030069|gb|EGI69894.1| Ribonuclease H2 subunit A [Acromyrmex echinatior] Length = 332 Score = 83.9 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 74/218 (33%), Gaps = 41/218 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V + G DSK ++ KKR+E+++ I Sbjct: 65 GVDEAGRGPVLGPMVYGISYAPLSQNQLLVDLGCADSKSLTEKKRDEIFDDICKHKDSIG 124 Query: 81 ISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSALID 121 +I S I + +A + A + + + Sbjct: 125 WAIEVISPNVIANNMYRRTKISLNEISMISATNLIREAIEAGVNVAEIYVDTVGKPESYQ 184 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-----HKKYPDYGFDSH 176 R + K D+ ++AASI AKV+RD +R +YG Sbjct: 185 TRLKSIFPSIKIIVAKKADATYPIVSAASICAKVSRDHAIRAWRFREDDCIETEYG---- 240 Query: 177 VGYPT-AKHQQVI-----KEKGPSCIHRLTFRPLRNLS 208 GYP + + + G + R ++ + Sbjct: 241 SGYPNDPVTKNWLSMNVDQVFGFPQLVRFSWSTAEQIL 278 >gi|328907963|gb|EGG27723.1| ribonuclease HII [Propionibacterium sp. P08] Length = 119 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 48/71 (67%) Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSC 195 + KGDS+ +AAASI+AKV RDR+M ++ P Y F H GY TA H++ ++E GPSC Sbjct: 42 MWKGDSVCACVAAASIVAKVVRDRIMIAMDREVPGYDFAVHKGYATALHRRRLEELGPSC 101 Query: 196 IHRLTFRPLRN 206 HR+++ ++ Sbjct: 102 QHRMSYANVQR 112 >gi|255549406|ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis] gi|223545084|gb|EEF46595.1| ribonuclease hi large subunit, putative [Ricinus communis] Length = 299 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 33/212 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--A 79 + GIDE GRG + GP+V + + DSK + KREEL+E + ++ Sbjct: 18 IMGIDEAGRGPVLGPMVYGCLYCARSYERTLSTLSFADSKTLKEDKREELFENLKANESI 77 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG----------------- 122 ++ + + + K ++ + E+ + L +G Sbjct: 78 GWAVDVIDPRELSAKMLQKNKINLNEISHESAIGLITRVLNEGVLLTQVYLDTVGDAEKY 137 Query: 123 --RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VG 178 + + K DS+ ++ ASI+AKVTRDR +R + G + G Sbjct: 138 RIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVLEETAEGISRNFGSG 197 Query: 179 Y-PTAKHQQVIKEK-----GPSCIHRLTFRPL 204 Y + + +K+ G + R ++ Sbjct: 198 YPGDPETKAWLKQHKHQVFGFPTLVRFSWGTC 229 >gi|322828022|gb|EFZ31977.1| ribonuclease HII, putative [Trypanosoma cruzi] Length = 479 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 42/72 (58%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I+GD SL+IAAAS +AKV RD +M YP Y F + GYP H + ++ G Sbjct: 389 VQPIIEGDKRSLTIAAASCLAKVARDEIMNYVSTLYPKYQFAENKGYPVEYHMRAVQRYG 448 Query: 193 PSCIHRLTFRPL 204 S IHR +++P Sbjct: 449 VSSIHRKSYKPC 460 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 13/62 (20%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ + + F I DSK +S +R +++ Sbjct: 134 IGCDEAGRGPLAGPVVGAAVCRIPLSSFNNELCAVYDASEEFQIFDSKSLSEGQRNVVFQ 193 Query: 74 KI 75 I Sbjct: 194 NI 195 >gi|71415356|ref|XP_809747.1| ribonuclease HII [Trypanosoma cruzi strain CL Brener] gi|70874177|gb|EAN87896.1| ribonuclease HII, putative [Trypanosoma cruzi] Length = 479 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 42/72 (58%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I+GD SL+IAAAS +AKV RD +M YP Y F + GYP H + ++ G Sbjct: 389 VQPIIEGDKRSLTIAAASCLAKVARDEIMNYVSTLYPKYQFAENKGYPVEYHMRAVQRYG 448 Query: 193 PSCIHRLTFRPL 204 S IHR +++P Sbjct: 449 VSSIHRKSYKPC 460 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 13/62 (20%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ + F I DSK +S +R +++ Sbjct: 134 IGCDEAGRGPLAGPVVGAAVCRIPLSSFNNELCAVYDTREEFQIFDSKSLSEGQRNVVFQ 193 Query: 74 KI 75 I Sbjct: 194 NI 195 >gi|71406256|ref|XP_805682.1| ribonuclease HII [Trypanosoma cruzi strain CL Brener] gi|70869181|gb|EAN83831.1| ribonuclease HII, putative [Trypanosoma cruzi] Length = 479 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 42/72 (58%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKG 192 +I+GD SL+IAAAS +AKV RD +M YP Y F + GYP H + ++ G Sbjct: 389 VQPIIEGDKRSLTIAAASCLAKVARDEIMNYVSTLYPKYQFAENKGYPVEYHMRAVQRYG 448 Query: 193 PSCIHRLTFRPL 204 S IHR +++P Sbjct: 449 VSSIHRKSYKPC 460 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 13/62 (20%) Query: 27 AGIDEVGRGALAGPVVVAAII-------------LDPNNIPFGINDSKKISHKKREELYE 73 G DE GRG LAGPVV AA+ + F I DSK +S +R +++ Sbjct: 134 IGCDEAGRGPLAGPVVGAAVCRIPLSSFNNELCAVYDAREEFQIFDSKSLSEGQRNVVFQ 193 Query: 74 KI 75 I Sbjct: 194 NI 195 >gi|290558916|gb|EFD92304.1| ribonuclease HII [Candidatus Parvarchaeum acidophilus ARMAN-5] gi|326422570|gb|EGD71965.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 218 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 75/208 (36%), Gaps = 31/208 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82 GIDE GRG + GP+++A + ++ + G+ DSK +S K+ L +I S Sbjct: 4 IGIDEAGRGPVIGPMIIAGVGINEDISNEFKSIGVKDSKLLSIKRIYLLEREIKKSTQNY 63 Query: 83 ISSASHQYIDKHNIHKATLDAI--------------YHAVENLQVIPRSALIDGRSIPED 128 + + K V + I Sbjct: 64 KTIKISSEEIDNRFEKGKNLNYLELDSMAVIANDLSGEKVIIDSPSSNTKKIKEYLQNLI 123 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKH 184 A D + ++AASI+AK R+R + K + Y F GYP T + Sbjct: 124 KRKIIIAENYADRNHVEVSAASILAKSEREREVDKIKKIF-GYDF--GSGYPSDPKTVEF 180 Query: 185 QQVIKEKG------PSCIHRLTFRPLRN 206 ++IKE G + R ++ L++ Sbjct: 181 LKIIKENGKIDESPYKELIRKSWSTLQS 208 >gi|20093626|ref|NP_613473.1| ribonuclease HII [Methanopyrus kandleri AV19] gi|74561281|sp|Q8TYV5|RNH2_METKA RecName: Full=Ribonuclease HII; Short=RNase HII gi|19886492|gb|AAM01403.1| Ribonuclease HII [Methanopyrus kandleri AV19] Length = 210 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 14/166 (8%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI--SHKKREELYEKITSSAIISI 83 V GIDE GRG + GP+VVA ++ + G DSK++ S ++R + + Sbjct: 4 VMGIDEAGRGPVFGPMVVAGVLAPKRELGLGARDSKELTRSARRRLIRALMSDERLRVDL 63 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE--------DLPCQAFA 135 ID+ + KA +AI V G PE A Sbjct: 64 RIVWPWEIDEEGVAKAEFEAIRELVRRAMPDEVILDKPGNYSPERLRRELDLPEGINLIA 123 Query: 136 VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + D+ ++AASI+AK RD ++R+ +Y + G GYP+ Sbjct: 124 EERADAKYEVVSAASIVAKTYRDWIVRLLELEYGEVG----SGYPS 165 >gi|284164032|ref|YP_003402311.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511] gi|284013687|gb|ADB59638.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511] Length = 228 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 76/216 (35%), Gaps = 41/216 (18%) Query: 28 GIDEVGRGALAGPVVVAAIIL-DPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G+DE G+G G + AA+ DP +P GI DSK++S ++REEL I I + A Sbjct: 4 GVDEAGKGPALGSMFAAAVHCEDPTALPDGIADSKRLSPERREELAAAIREDDGIRVGVA 63 Query: 87 --------SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL--------- 129 + A +AI A+E + + D Sbjct: 64 EITPARIDDPETDMNSLAVAAHAEAIDGALEADALETAPITGLCDACDTDAERFARRVTD 123 Query: 130 -------------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 A D S + AAS++AKV RD + +Y G Sbjct: 124 ACTDLFADASSALEINIEARHGADDESPIVGAASVVAKVERDAHVAALADEYGPVG---- 179 Query: 177 VGYPT-AKHQQVIK----EKG-PSCIHRLTFRPLRN 206 GYP ++ ++ E G R ++ + Sbjct: 180 SGYPNDPNTREFLESYVGEYGDLPPCARESWSTCED 215 >gi|213857938|ref|ZP_03384909.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 131 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 57/131 (43%), Positives = 75/131 (57%), Gaps = 2/131 (1%) Query: 63 ISHKKREELYEKITSSA-IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 +S K+R LY++I A S+ A ID+ NI AT+ A+ AV L + P LID Sbjct: 1 MSEKRRLSLYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQRAVAGLHIAPEYVLID 60 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 G P +LP + AV+KGDS I+AASI+AKVTRD M +P YGF H GYPT Sbjct: 61 GNRCP-ELPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPT 119 Query: 182 AKHQQVIKEKG 192 A H + + + G Sbjct: 120 AFHLEKLAQYG 130 >gi|115896475|ref|XP_001199108.1| PREDICTED: similar to Ribonuclease H2, large subunit [Strongylocentrotus purpuratus] gi|115950853|ref|XP_001185778.1| PREDICTED: similar to Ribonuclease H2, large subunit [Strongylocentrotus purpuratus] Length = 324 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 46/216 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG + GP+V + G DSK ++ +RE L + I ++ Sbjct: 55 GIDEAGRGPVLGPMVYGTSFCPISWNTQLGELGFADSKTLNEGQREALMKSIQDASDYMG 114 Query: 83 --------------ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + + ++ ++ A + +QV G + Sbjct: 115 YKVEILSPNYIANSMLRRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVGDAKKYQ 174 Query: 129 LPCQ-------AFAVIKGDSISLSIAAASIIAKVTRDR--------LMRIAHKKYPDYGF 173 + K DS ++AASI AKVTRDR K+ +YG Sbjct: 175 DKLKGLFPDLDITVCPKADSKFPIVSAASICAKVTRDRATTGWKFVETNDFDKE--NYG- 231 Query: 174 DSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRP 203 GYP+ ++ + G S R ++ Sbjct: 232 ---SGYPSDPATKKWLAGNVDPVFGFSQFVRFSWST 264 >gi|322489445|emb|CBZ24703.1| putative ribonuclease HII [Leishmania mexicana MHOM/GT/2001/U1103] Length = 268 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRI-AHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 V+KGD+ LSIAAASI+AKV RD H+ +P YGFD H GY TA H+ + Sbjct: 173 CTTVVKGDATLLSIAAASIVAKVARDAYAVSVMHRAFPQYGFDHHKGYCTAAHKAELARW 232 Query: 192 GPSCIHRLTFRPLR 205 GPS HRL + P++ Sbjct: 233 GPSPFHRLDYAPVK 246 >gi|9664592|gb|AAF97195.1|AF268611_19 ribonuclease HII [uncultured marine group II euryarchaeote 37F11] Length = 250 Score = 83.1 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 73/218 (33%), Gaps = 39/218 (17%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI 80 + G+DE GRG + GP+VV + + + I DSK +SH KR+ Y+ + Sbjct: 6 RLIGVDEAGRGPVLGPLVVGLLSIPKEDEYMLEEQCIEDSKHLSHAKRKLHYDWLNQQVT 65 Query: 81 ---ISISSASHQYIDKHNIHKATLDAIYHA------------------------VENLQV 113 + + + N A I + + Sbjct: 66 ERGWYVDTIICKPNRIDNAVYAKGLNILEVDLFASILNRHHRLFTQELDILLDACDVNEE 125 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + + + + L A K D+ + ASI+AKV RD + D G Sbjct: 126 RFSNRISERLTDWPWLKTTMIAEHKADTNHRIVGGASILAKVVRDMEIERIAV---DVGA 182 Query: 174 DSHVGYPT-AKHQQV----IKEKGPSCIHRLTFRPLRN 206 GYP + IKE G R ++ ++ Sbjct: 183 PVGSGYPADPNTVKALPYLIKEDGIHEEIRWSWATVKR 220 >gi|294890217|ref|XP_002773106.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC 50983] gi|239878004|gb|EER04922.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC 50983] Length = 350 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 47/227 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA---- 79 GIDE GRG + GP+V A I D G NDSK+++ KR EL+E I + A Sbjct: 56 GIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFEGIHNEALKDD 115 Query: 80 ---------------IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + + +++ + A + E + V G Sbjct: 116 GVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVKEVYVDTVGDP 175 Query: 125 IPEDLPC----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD---- 170 K D+I +AASI AKV RDRL+ YP+ Sbjct: 176 ERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEEISYYPEGEGV 235 Query: 171 ----YGFDSHVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 GY A+ + +++ R ++ + + Sbjct: 236 ATLCRSVKVGSGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEI 282 >gi|72007775|ref|XP_782683.1| PREDICTED: similar to Ribonuclease H2, large subunit [Strongylocentrotus purpuratus] gi|115969873|ref|XP_001197209.1| PREDICTED: similar to Ribonuclease H2, large subunit [Strongylocentrotus purpuratus] Length = 324 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 73/214 (34%), Gaps = 42/214 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG + GP+V + G DSK ++ +RE L + I ++ Sbjct: 55 GIDEAGRGPVLGPMVYGTSFCPISWNTQLGELGFADSKTLNEGQREALMKSIQDASDYMG 114 Query: 83 --------------ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + + ++ ++ A + +QV G + Sbjct: 115 YKVEILSPNYIANSMLRRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVGDAKKYQ 174 Query: 129 LPCQ-------AFAVIKGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGFDS 175 + K DS ++AASI AKVTRDR + +YG Sbjct: 175 DKLKGLFPDLDITVCPKADSKFPIVSAASICAKVTRDRATTGWKFVEKNDIDKENYG--- 231 Query: 176 HVGYPT-AKHQQVIKE-----KGPSCIHRLTFRP 203 GYP+ ++ + G S R ++ Sbjct: 232 -SGYPSDPATKKWLAGNVDPVFGFSQFVRFSWST 264 >gi|18400719|ref|NP_565584.1| ribonuclease HII family protein [Arabidopsis thaliana] gi|49066054|sp|Q9SEZ6|RNH2A_ARATH RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|26450346|dbj|BAC42289.1| putative ribonuclease large subunit [Arabidopsis thaliana] gi|28973385|gb|AAO64017.1| putative ribonuclease large subunit [Arabidopsis thaliana] gi|330252563|gb|AEC07657.1| Ribonuclease H2 subunit A [Arabidopsis thaliana] Length = 296 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 33/210 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYE--KITSSAII 81 GIDE GRG + GP+V + + DSK + +KREELYE K+ S Sbjct: 18 GIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYESLKLDKSLGW 77 Query: 82 SISSASHQ------------YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-- 127 ++ + +++ + + A + + G Sbjct: 78 AVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYRI 137 Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGY- 179 + K DS+ ++ ASI+AKVTRDR ++ + + + GY Sbjct: 138 KLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYP 197 Query: 180 PTAKHQQVIKEK-----GPSCIHRLTFRPL 204 + + + + G + R ++ Sbjct: 198 GDPETKAWLVQHKHSVFGFPSLVRFSWGTC 227 >gi|299473412|emb|CBN77810.1| conserved unknown protein [Ectocarpus siliculosus] Length = 320 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 77/221 (34%), Gaps = 36/221 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSSA 79 + GIDE GRG + GP+ A D G +DSK ++ +R L+++I + Sbjct: 49 GVILGIDEAGRGPVLGPMTYGAAYWSCADDKEMSAKGFDDSKALTSDQRTSLFDRIDRTP 108 Query: 80 IISI--------------SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 + ++ + A ++V G Sbjct: 109 EVGWVLRLISARELSDKMCRKVPYSLNVISHDAAAELIRAVQARGVKVTQVYVDTVGDPA 168 Query: 126 PE--------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS-- 175 + K DS+ + +AASI+AKVTRDR++ P+ F Sbjct: 169 FYQSKLEKEFGKGIKFVVAKKADSLYKTASAASIVAKVTRDRIVEGWQWSEPNLDFSEDR 228 Query: 176 --HVGYPTAKH-QQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP + ++ ++ G I R ++ + + Sbjct: 229 KYGSGYPGDEKCKKWLESNVDPVFGFPDICRFSWGTTKEIL 269 >gi|134114978|ref|XP_773787.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256415|gb|EAL19140.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var. neoformans B-3501A] Length = 326 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 78/245 (31%), Gaps = 61/245 (24%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + GIDE GRG + GP+V AA + P G +DSK +S + R+ L+E Sbjct: 34 GEGWIMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFDV 93 Query: 78 SA--IISISSASHQYIDKH-------------------------------------NIHK 98 S S+ S Q I + Sbjct: 94 HPPLCYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTEASFSCSLA 153 Query: 99 ATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD 158 A+ + + + R + K DS+ + AASI+AKVTRD Sbjct: 154 ASCWLTICLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRD 213 Query: 159 RLMRIA----HKKYPDYGFD--------SHVGYPT-AKHQQVIKE-----KGPSCIHRLT 200 R + + GYP+ K Q +K G I R + Sbjct: 214 RYVHGWVDPEDVIHSATHIKSQDEEEVIRGSGYPSDPKTQAYLKGSIDPVFGYKGIVRFS 273 Query: 201 FRPLR 205 + ++ Sbjct: 274 WATVK 278 >gi|324509653|gb|ADY44053.1| Ribonuclease H2 subunit A [Ascaris suum] Length = 298 Score = 82.7 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 46/232 (19%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEK 74 V GIDE GRG + GP+V A I + G++DSK ++ +KR +++E Sbjct: 23 FASGKPCVLGIDEAGRGPVLGPMVYACAISPLDAAEQLKELGVDDSKALTEEKRTQIFEN 82 Query: 75 ITSSAIISISSASHQYIDKHNIHKATLDAIYHAV-------------------------E 109 + + + A + + A + Sbjct: 83 MNNEENTTKVVAYAYRVLSARLISAEMLRRCKYSLNELSHTSAINLIKFALENGINVTEI 142 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA----- 164 + + + + K DS+ + AASI AKVTRD ++R Sbjct: 143 YVDTVGPKSTYQAKLQAHFPNISITVTEKADSLFPVVGAASIAAKVTRDGVLRDWVFVEG 202 Query: 165 HKKYP--DYGFDSHVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 P YG GY ++ + G S + R +++ + Sbjct: 203 DVTVPEGGYG----SGYPGDPNTRKFLVTSIDPVFGYSSLVRFSWKTAETIL 250 >gi|297825539|ref|XP_002880652.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326491|gb|EFH56911.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 296 Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 33/210 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK--ITSSAII 81 GIDE GRG + GP+V + + DSK + +KREELYE + S Sbjct: 18 GIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREELYENLKLDKSLGW 77 Query: 82 SISSASHQ------------YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-- 127 ++ + +++ + + A + + G Sbjct: 78 AVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPEKYRI 137 Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGY- 179 + K DS+ ++ ASI+AKVTRDR +R + + + GY Sbjct: 138 KLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALREWLVEETGEDINRNFGSGYP 197 Query: 180 PTAKHQQVIKEK-----GPSCIHRLTFRPL 204 + + + + G + R ++ Sbjct: 198 GDPETKAWLVQHKHSVFGFPSLVRFSWGTC 227 >gi|126322781|ref|XP_001362490.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 304 Score = 82.4 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 73/216 (33%), Gaps = 42/216 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITS---SAI 80 GIDE GRG + GP+V + + DSK +S +RE L+ K+ Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPLSRLGDLEALKVADSKTLSEAERERLFGKLDQARDFVG 91 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIPRSALID 121 ++ S I +A + + + + + + Sbjct: 92 WALDILSPNLISNSMQRRAKYNLNSLSHDTAMALVQLALDQGVKVTQVFVDTVGPADKYQ 151 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGFDS 175 + + K DS+ ++AASI AKV RD + + DYG Sbjct: 152 QKLQERFPELEVTVRPKADSLFPVVSAASICAKVARDQVVKRWKFLEDLGDLKMDYG--- 208 Query: 176 HVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLR 205 GYP K ++ + + G R ++ + Sbjct: 209 -SGYPNDPKTKEWLSQCLDPVFGFPQFVRFSWSTAQ 243 >gi|149037818|gb|EDL92178.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus] gi|149037821|gb|EDL92181.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus] Length = 282 Score = 82.4 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 70/211 (33%), Gaps = 42/211 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SS 78 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89 Query: 79 AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSAL 119 ++ S I I A + + + Sbjct: 90 VGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGF 173 R + K DS+ ++AASIIAKV RD + + DYG Sbjct: 150 YQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHR 198 GYP K + +++ G R Sbjct: 209 ---SGYPNDPKTKAWLRKHVDPVFGFPQFVR 236 >gi|56754417|gb|AAW25396.1| SJCHGC03278 protein [Schistosoma japonicum] Length = 289 Score = 82.4 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 37/217 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIISI 83 GIDE GRG + GP+V A + N + G+ DSK +S +RE+L + + + Sbjct: 3 GIDEAGRGPVLGPMVYACALSPINRLNELTTIGLADSKTLSEIQREKLLQDMLNKCDWMS 62 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPR----------------------SALID 121 + V + + + + Sbjct: 63 AVVHVISPVYITEKMLDRSKTSLNVISHDSAIQLIQTVLDSGINLVEVYVDTVGKAEHYE 122 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY----PDYGFDSHV 177 + + K D ++AASI AKVTRDR++++ K+ PD G Sbjct: 123 AKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRILQMWPKEERGNVPD-GTGLGS 181 Query: 178 GYP----TAKHQQVIKE--KGPSCIHRLTFRPLRNLS 208 GYP T + + + G + R ++ L Sbjct: 182 GYPGDPVTKSYLRACLDPVFGFPSLVRSSWSTASTLL 218 >gi|194766523|ref|XP_001965374.1| GF24795 [Drosophila ananassae] gi|190617984|gb|EDV33508.1| GF24795 [Drosophila ananassae] Length = 347 Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V G DSK+++ +KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGIAYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133 Query: 81 ---ISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + + + + Sbjct: 134 CIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNISEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ + +P+ G Sbjct: 194 KYQEKLLKRFPTFKITVAKKADSTYPIVSAASICAKVTRDHALKVWN--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 GY ++ + E G + R ++ N Sbjct: 251 AFGSGYPGDPVTKRFLAEHIDVVFGFPRLVRFSWSTAEN 289 >gi|213029433|ref|ZP_03343880.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 92 Score = 82.0 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISI 83 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R LY++I A S+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLSEKRRLSLYDEIKEKALSWSL 70 Query: 84 SSASHQYIDKHNIHKATLDAIY 105 A ID+ NI AT+ A+ Sbjct: 71 GRAEAHEIDELNILHATMLAMQ 92 >gi|328783769|ref|XP_396289.3| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Apis mellifera] Length = 350 Score = 81.6 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 74/217 (34%), Gaps = 40/217 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAI--- 80 GIDE GRG + GP+V + G DSK ++ +KR+ +++KI Sbjct: 82 GIDEAGRGPVLGPMVYGISYAPLSEKQLLVDLGCADSKSLTEEKRDTIFDKICEQYKTIG 141 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIPRSALID 121 ++ S I + ++ + I + Sbjct: 142 WAVDVISPNVISNSMYRRVKTSLNEVSMNSAIELAKLVIEAGARITEIYVDTIGKPEKYQ 201 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA----HKKYPDYGFDSHV 177 + + K DS ++AASI AKV+RD +R +YG Sbjct: 202 AKLEQIFPDIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQFLEGSITTEYG----S 257 Query: 178 GYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP + ++ + E G I R ++ + Sbjct: 258 GYPNDPETKKWLSENVDPVFGFPHIVRFSWSTAEKIL 294 >gi|194853461|ref|XP_001968168.1| GG24650 [Drosophila erecta] gi|190660035|gb|EDV57227.1| GG24650 [Drosophila erecta] Length = 347 Score = 81.6 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 47/221 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V + G DSK+++ +KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESKKPLEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133 Query: 81 ---ISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CIGWAVEIISPSTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ K+P+ G Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPE-GLVIKDN 250 Query: 174 DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206 GYP T +H ++ G + R ++ N Sbjct: 251 AFGSGYPGDPVTKRFLAEHIDLV--FGFPRLVRFSWSTAEN 289 >gi|195350095|ref|XP_002041577.1| GM16670 [Drosophila sechellia] gi|194123350|gb|EDW45393.1| GM16670 [Drosophila sechellia] Length = 347 Score = 81.2 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLERNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|320100359|ref|YP_004175951.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162] gi|319752711|gb|ADV64469.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162] Length = 255 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 35/220 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 G+DE GRG G +V+ +I G+ DSK + R EL+ +I Sbjct: 2 SAGDTIEIGVDEAGRGPFVGDMVIVGVIGPSRVFESLVSIGLKDSKALEPVARRELFWEI 61 Query: 76 ---------TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI------ 120 + +I + ++ I + Y + + + Sbjct: 62 LSSNVDIVAWLVSPFTIDRGNMNELEYIRICRILKLLSYSRLARSKPGNSLRIYVDEVKG 121 Query: 121 ------DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 + + + D+ +++AAS+IAKV RDR + + K G Sbjct: 122 YGESVRECAMRIYGEHVEVVMEPEADARYPAVSAASVIAKVIRDRNIDVLGKITGGLG-- 179 Query: 175 SHVGYPT-AKHQQVIKE-KG----PSCIHRLTFRPLRNLS 208 GYP+ + + G P R ++ +R+++ Sbjct: 180 --SGYPSDPASRAWLATIYGRWDKPPVFIRRSWGIVRDIA 217 >gi|21593541|gb|AAM65508.1| putative ribonuclease large subunit [Arabidopsis thaliana] Length = 280 Score = 81.2 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 33/210 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYE--KITSSAII 81 GIDE GRG + GP+V + + DSK + +KRE+LYE K+ S Sbjct: 2 GIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREDLYESLKLDKSLGW 61 Query: 82 SISSASHQ------------YIDKHNIHKATLDAIYHAVE-------NLQVIPRSALIDG 122 ++ + +++ + + A L + Sbjct: 62 AVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYKI 121 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGY- 179 + + K DS+ ++ ASI+AKVTRDR ++ + + + GY Sbjct: 122 KLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGYP 181 Query: 180 PTAKHQQVIKEK-----GPSCIHRLTFRPL 204 + + + + G + R ++ Sbjct: 182 GDPETKAWLVQHKHSVFGFPSLVRFSWGTC 211 >gi|261886381|ref|ZP_06010420.1| ribonuclease HII [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 102 Score = 80.8 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 47/92 (51%) Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 +++ + ++K DS ++AASIIAKV+RDR MR K YP Sbjct: 1 MIKMHFNECNFIYDGNCDYGVKNIKTIVKADSSVPQVSAASIIAKVSRDRQMRRFDKIYP 60 Query: 170 DYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 D+G+ H GY H + +K+ G + + RL+F Sbjct: 61 DFGYAKHKGYGVKAHIEALKQHGSNELTRLSF 92 >gi|224097610|ref|XP_002311009.1| predicted protein [Populus trichocarpa] gi|222850829|gb|EEE88376.1| predicted protein [Populus trichocarpa] Length = 297 Score = 80.8 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 79/219 (36%), Gaps = 37/219 (16%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--A 79 + GIDE GRG + GP+V + + DSK + +KREEL+EK+ ++ Sbjct: 16 IMGIDEAGRGPVLGPMVYGCLYCARSYEKTLSTLKFADSKTLKEEKREELFEKLKANELI 75 Query: 80 IISISSASHQ------------YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 ++ + +++ + A+ + + G Sbjct: 76 GWAVDVIDPRELSAKMLKKIKINLNEISHDSASGLVTRVLNMGVLLTDVYVDTVGDPEKY 135 Query: 128 -------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VG 178 + K DS+ ++ ASI+AKVTRDR +R + G Sbjct: 136 RIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLDETAENMTRNFGSG 195 Query: 179 Y-PTAKHQQVIKEK-----GPSCIHRLTFRPL----RNL 207 Y + + +++ G + R ++ +N+ Sbjct: 196 YPGDPETKSWLEKHQHSVFGFPSLVRFSWGTCTSYSKNM 234 >gi|195470258|ref|XP_002087425.1| GE16128 [Drosophila yakuba] gi|194173526|gb|EDW87137.1| GE16128 [Drosophila yakuba] Length = 347 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 75/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V G DSK+++ +KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKDYATS 133 Query: 81 ---ISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ K+P+ G Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 GY ++ + E G + R ++ N Sbjct: 251 AFGSGYPGDPVTRRFLTEHIDLVFGFPRLVRFSWSTAEN 289 >gi|239622462|ref|ZP_04665493.1| ribonuclease HII [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514459|gb|EEQ54326.1| ribonuclease HII [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 279 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 20/110 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAIILDPNNIPF------------- 55 P +LE + + +AG DEVGRGALAGPV+V A I + P Sbjct: 4 PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 56 -----GINDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA 99 G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYA 113 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIK 189 +KGD ++A A++IAKVTRDRLM + +Y Y + + GY +A H+ I Sbjct: 205 ITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAAYEWAHNKGYGSAAHRAAIA 264 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR+++ Sbjct: 265 EHGPTPLHRVSW 276 >gi|325189407|emb|CCA23898.1| ribonuclease H2 subunit A putative [Albugo laibachii Nc14] Length = 303 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 75/224 (33%), Gaps = 44/224 (19%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKITSS-- 78 + GIDE GRG + GP+V +A + G +DSK +S R+ LY+ IT S Sbjct: 23 VIMGIDEAGRGPVLGPMVYSAAYWAIDSNEACEAMGFDDSKVLSAASRKSLYKTITESTE 82 Query: 79 -----------AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + IS + + N + + + + Sbjct: 83 IGSISWIARSVSACEISDKMQRKVRNLNEIARDATIQIIEIVQAKRVCLQCVYVDTIGDP 142 Query: 128 DLPCQAFAVIK-----------GDSISLSIAAASIIAKVTRDRLMRIA------HKKYPD 170 D + ++AASI+AKV RD ++ H + Sbjct: 143 SWYQNFLTKHFREKITFVVRKKADQLFKIVSAASIVAKVIRDTILEEWKWETLTHTLPTE 202 Query: 171 YGFDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 +G GYP+ + + + I R ++ + NL Sbjct: 203 FG----SGYPSDPSTKAWLLQYRDPIFAYPNIVRFSWSTIENLL 242 >gi|110668982|ref|YP_658793.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790] gi|109626729|emb|CAJ53196.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790] Length = 231 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 73/216 (33%), Gaps = 36/216 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISI--- 83 G DE G+G + GP++ AA+ P+ IP I+DSK+++ R L E + S I I Sbjct: 5 IGSDEAGKGPVLGPMICAAVHASPSVIPDDIDDSKRLNASTRRRLRETLESHTAIDIGTA 64 Query: 84 ---------SSASHQYIDKHNIHKAT-----------------LDAIYHAVENLQVIPRS 117 + + A D Sbjct: 65 VIPVAQIDDPRTDMNTLTLNGHIAAIADLDGVATFNGTIVADASDVSESRFATRLESRLI 124 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 +G C A D +AAASIIAK RD + K+Y G Sbjct: 125 DECNGIDTIALNHCSIEARHGADEDDPLVAAASIIAKARRDEQITALAKEYETTG-PIGS 183 Query: 178 GYPT-AKHQQVIKEK----G-PSCIHRLTFRPLRNL 207 GYP+ K + ++ G R ++ + ++ Sbjct: 184 GYPSDQKTRAFLRRYIRTNGKVPACARRSWATVDDI 219 >gi|195575541|ref|XP_002077636.1| GD22959 [Drosophila simulans] gi|194189645|gb|EDX03221.1| GD22959 [Drosophila simulans] Length = 347 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|116806104|emb|CAL26435.1| CG13690 [Drosophila simulans] Length = 347 Score = 80.8 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|198473777|ref|XP_001356439.2| GA12461 [Drosophila pseudoobscura pseudoobscura] gi|198138103|gb|EAL33503.2| GA12461 [Drosophila pseudoobscura pseudoobscura] Length = 340 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 47/221 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V + I G DSK+++ +KR+ ++ ++ + Sbjct: 67 GVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDVIFNEMNTLEYANS 126 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIPRSA 118 ++ S I +A ++E + + Sbjct: 127 CVGWAVEIISPNVISTSMYRRAKCSLNEVSMESAMGLIQQAIDAGVNIAEVYVDTVGPPE 186 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ ++P+ G Sbjct: 187 KYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--RFPE-GLVIKDN 243 Query: 174 DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206 GYP T +H ++ G + R ++ N Sbjct: 244 AFGSGYPGDPVTKRFLTEHIDLV--FGFPRLVRFSWSTAEN 282 >gi|223967509|emb|CAR93485.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 76/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V + G DSK+++ +KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEEKRDIIFNDINTKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|146080572|ref|XP_001464032.1| ribonuclease hii [Leishmania infantum JPCM5] gi|134068122|emb|CAM66407.1| putative ribonuclease HII [Leishmania infantum JPCM5] gi|322497431|emb|CBZ32505.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 268 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRI-AHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 V+KGD+ LSIAAASI+AKV RD H+ +P YGFD H GY TA H+ + Sbjct: 173 CTTVVKGDATLLSIAAASIVAKVARDAYAVSVMHRAFPQYGFDHHKGYCTAAHKAELARW 232 Query: 192 GPSCIHRLTFRPLR 205 GPS HRL + P++ Sbjct: 233 GPSRFHRLDYAPVK 246 >gi|302683973|ref|XP_003031667.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8] gi|300105360|gb|EFI96764.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8] Length = 286 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 37/235 (15%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSK 61 P + A + + + G+DE GRG + GP+V + G DSK Sbjct: 11 FPLTASYTYHAPIPTASGKYILGVDEAGRGPVLGPLVYGVAYVAETGKERMEAMGFADSK 70 Query: 62 KISHKKREELYEKITSSAII---------------SISSASHQYIDKHNIHKATLDAIYH 106 + +RE L E + S+ + + +++ + + Sbjct: 71 TLDAARREALLETLCSAPDVLGWAVRVISPQALSSGMLRRPPTNLNEQSRDATVMLIRGV 130 Query: 107 AVENLQVIPRSALIDGRSIPEDLP-------CQAFAVIKGDSISLSIAAASIIAKVTRDR 159 +Q+ G ++ + + K DS + AAS+ AKVTRD Sbjct: 131 LARGIQLSAVFVDALGPTVAYEQWLSQRFPEIKFTVANKADSKFKIVGAASVAAKVTRDA 190 Query: 160 LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK-----EKGPSCIHRLTFRPLRNLS 208 L+ ++P + GYP+ K + + G R ++ + + Sbjct: 191 LID--ASRFPA---ERGSGYPSDPKTKAWLAAAVEPTFGFPRAVRFSWATSKVIL 240 >gi|229140480|ref|ZP_04269035.1| Ribonuclease HII [Bacillus cereus BDRD-ST26] gi|228643041|gb|EEK99317.1| Ribonuclease HII [Bacillus cereus BDRD-ST26] Length = 106 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 31/45 (68%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 E +REK + +AGIDEVGRG LAGPVV AA++L + + G+ Sbjct: 62 YENALREKGLTYIAGIDEVGRGPLAGPVVTAAVVLPKDFLYSGVK 106 >gi|322690530|ref|YP_004220100.1| ribonuclease HII [Bifidobacterium longum subsp. longum JCM 1217] gi|320455386|dbj|BAJ66008.1| ribonuclease HII [Bifidobacterium longum subsp. longum JCM 1217] Length = 279 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 20/110 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAIILDPNNIPF------------- 55 P +LE + + +AG DEVGRGALAGPV+V A I + P Sbjct: 4 PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 56 -----GINDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA 99 G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYA 113 Score = 78.5 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIK 189 +KGD ++A A++IAKVTRDRLM + +Y Y + + GY +A H+ I Sbjct: 205 ITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAAYEWAHNKGYGSAAHRTAIA 264 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR+++ Sbjct: 265 EHGPTPLHRVSW 276 >gi|290769753|gb|ADD61528.1| putative protein [uncultured organism] Length = 279 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 20/110 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAIILDPNNIPF------------- 55 P +LE + + +AG DEVGRGALAGPV+V A I + P Sbjct: 4 PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 56 -----GINDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA 99 G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYA 113 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIK 189 +KGD ++A A++IAKVTRDRLM + +Y Y + + GY +A H+ I Sbjct: 205 ITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAAYEWAHNKGYGSAAHRAAIA 264 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR+++ Sbjct: 265 EHGPTPLHRVSW 276 >gi|223967505|emb|CAR93483.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V + G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEVLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|116806082|emb|CAL26424.1| CG13690 [Drosophila melanogaster] gi|116806084|emb|CAL26425.1| CG13690 [Drosophila melanogaster] gi|116806090|emb|CAL26428.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V + G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|116806096|emb|CAL26431.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V + G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|116806092|emb|CAL26429.1| CG13690 [Drosophila melanogaster] gi|116806094|emb|CAL26430.1| CG13690 [Drosophila melanogaster] gi|116806102|emb|CAL26434.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V + G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|116806098|emb|CAL26432.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V + G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|116806080|emb|CAL26423.1| CG13690 [Drosophila melanogaster] gi|116806088|emb|CAL26427.1| CG13690 [Drosophila melanogaster] gi|116806100|emb|CAL26433.1| CG13690 [Drosophila melanogaster] Length = 347 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V + G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|116806086|emb|CAL26426.1| CG13690 [Drosophila melanogaster] gi|223967493|emb|CAR93477.1| CG13690-PA [Drosophila melanogaster] gi|223967499|emb|CAR93480.1| CG13690-PA [Drosophila melanogaster] gi|223967501|emb|CAR93481.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V + G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|24580635|ref|NP_608521.1| CG13690 [Drosophila melanogaster] gi|11387117|sp|Q9VPP5|RNH2A_DROME RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|7296208|gb|AAF51500.1| CG13690 [Drosophila melanogaster] gi|66772719|gb|AAY55671.1| IP10665p [Drosophila melanogaster] gi|220951678|gb|ACL88382.1| CG13690-PA [synthetic construct] gi|223967491|emb|CAR93476.1| CG13690-PA [Drosophila melanogaster] gi|223967495|emb|CAR93478.1| CG13690-PA [Drosophila melanogaster] gi|223967497|emb|CAR93479.1| CG13690-PA [Drosophila melanogaster] gi|223967507|emb|CAR93484.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V + G DSK+++ KR+ ++ I + Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|195147238|ref|XP_002014587.1| GL19264 [Drosophila persimilis] gi|194106540|gb|EDW28583.1| GL19264 [Drosophila persimilis] Length = 340 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 47/221 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V + I G DSK+++ +KR+ ++ ++ + Sbjct: 67 GVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDVIFNELNTLEYANS 126 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIPRSA 118 ++ S I +A ++E + + Sbjct: 127 CVGWAVEIISPNVISTSMYRRAKCSLNEVSMESAMGLIQQAIDAGVNIAEVYVDTVGPPE 186 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ ++P+ G Sbjct: 187 KYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--RFPE-GLVIKDN 243 Query: 174 DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206 GYP T +H ++ G + R ++ N Sbjct: 244 AFGSGYPGDPVTKRFLTEHIDLV--FGFPRLVRFSWSTAEN 282 >gi|223967503|emb|CAR93482.1| CG13690-PA [Drosophila melanogaster] Length = 347 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 75/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKIT------S 77 G+DE GRG + GP+V + G DSK+++ KR+ ++ I S Sbjct: 74 GVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINAKEYATS 133 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 134 CVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTVGPPE 193 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ +P+ G Sbjct: 194 KYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWS--FPE-GLVIKDN 250 Query: 174 DSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLRN 206 + GY ++ + E G + R ++ N Sbjct: 251 EFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAEN 289 >gi|195032708|ref|XP_001988545.1| GH10519 [Drosophila grimshawi] gi|193904545|gb|EDW03412.1| GH10519 [Drosophila grimshawi] Length = 334 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 47/221 (21%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKR----------EELYE 73 G+DE GRG + GP+V + G DSK+++ +KR E Sbjct: 61 GVDEAGRGPVLGPMVYGISYCPLESKSVLVELGCADSKQLTEEKRDIIFNDLNTLEYANS 120 Query: 74 KITSSAIISISSASHQYIDKHNI---------------HKATLDAIYHAVENLQVIPRSA 118 I + I + + + A + A + + Sbjct: 121 CIGWAVEIISPNVISSSMYRRTKCSLNEISMDSAMGLIQHAIDAGVNIAEVYVDTVGPPE 180 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ ++P+ G Sbjct: 181 KYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--QFPE-GLLIKDN 237 Query: 174 DSHVGYP----TA----KHQQVIKEKGPSCIHRLTFRPLRN 206 GYP T +H ++ G + R ++ N Sbjct: 238 AFGSGYPGDPVTKRFLTEHIDLV--FGFPRLVRFSWSTAEN 276 >gi|317482036|ref|ZP_07941061.1| ribonuclease HII [Bifidobacterium sp. 12_1_47BFAA] gi|316916603|gb|EFV38000.1| ribonuclease HII [Bifidobacterium sp. 12_1_47BFAA] Length = 279 Score = 80.0 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 20/110 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAIILDPNNIPF------------- 55 P +LE + + +AG DEVGRGALAGPV+V A I + P Sbjct: 4 PTLDLERSLAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 56 -----GINDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA 99 G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYA 113 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIK 189 +KGD ++A A++IAKVTRDRLM + +Y Y + + GY +A H+ I Sbjct: 205 ITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAAYEWAHNKGYGSAAHRTAIA 264 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR+++ Sbjct: 265 EHGPTPLHRVSW 276 >gi|148673841|gb|EDL05788.1| mCG129830, isoform CRA_a [Mus musculus] Length = 226 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 67/199 (33%), Gaps = 37/199 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SS 78 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 89 Query: 79 AIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRSAL 119 ++ S I I A + + + Sbjct: 90 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPET 149 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGF 173 R + K DS+ ++AASI AKV RD+ + DYG Sbjct: 150 YQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYG- 208 Query: 174 DSHVGYPT-AKHQQVIKEK 191 GYP K + +++ Sbjct: 209 ---SGYPNDPKTKAWLRKH 224 >gi|23464878|ref|NP_695481.1| ribonuclease HII [Bifidobacterium longum NCC2705] gi|23325467|gb|AAN24117.1| probable ribonuclease HII [Bifidobacterium longum NCC2705] gi|291517371|emb|CBK70987.1| RNase HII [Bifidobacterium longum subsp. longum F8] Length = 279 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 20/110 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAIILDPNNIPF------------- 55 P +LE ++ + +AG DEVGRGALAGPV+V A I + P Sbjct: 4 PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 56 -----GINDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA 99 G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYA 113 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIK 189 +KGD ++A A++IAKVTRDRLM + +Y Y + + GY +A H+ I Sbjct: 205 ITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAAYEWAHNKGYGSAAHRAAIA 264 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR+++ Sbjct: 265 EHGPTPLHRVSW 276 >gi|322688522|ref|YP_004208256.1| ribonuclease HII [Bifidobacterium longum subsp. infantis 157F] gi|320459858|dbj|BAJ70478.1| ribonuclease HII [Bifidobacterium longum subsp. infantis 157F] Length = 279 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 20/110 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAIILDPNNIPF------------- 55 P +LE ++ + +AG DEVGRGALAGPV+V A I + P Sbjct: 4 PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 56 -----GINDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA 99 G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNAEIDEWGITYA 113 Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIK 189 +KGD ++A A++IAKVTRDRLM + +Y Y + + GY +A H+ I Sbjct: 205 ITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAAYEWAHNKGYGSAAHRAAIA 264 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR+++ Sbjct: 265 EHGPTPLHRVSW 276 >gi|46190774|ref|ZP_00121089.2| COG0164: Ribonuclease HII [Bifidobacterium longum DJO10A] gi|189439885|ref|YP_001954966.1| ribonuclease HII [Bifidobacterium longum DJO10A] gi|189428320|gb|ACD98468.1| Ribonuclease HII [Bifidobacterium longum DJO10A] Length = 279 Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIK 189 +KGD ++A A++IAKVTRDRLM + +Y Y + + GY +A H+ I Sbjct: 205 ITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAAYEWAHNKGYGSAAHRAAIA 264 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR+++ Sbjct: 265 EHGPTPLHRVSW 276 Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 20/110 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAIILDPNNIPF------------- 55 P +LE + + + G DEVGRGALAGPV+V A I + P Sbjct: 4 PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63 Query: 56 -----GINDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA 99 G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYA 113 >gi|157866086|ref|XP_001681749.1| ribonuclease hii [Leishmania major strain Friedlin] gi|68125048|emb|CAJ02388.1| putative ribonuclease HII [Leishmania major strain Friedlin] Length = 268 Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRI-AHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 V+KGD+ LSIAAASI+AKV RD H +P YGFD H GY TA H+ + Sbjct: 173 CTTVVKGDATLLSIAAASIVAKVARDAYAVSVMHPAFPQYGFDHHKGYCTAAHKAELARW 232 Query: 192 GPSCIHRLTFRPLR 205 GPS HRL + P++ Sbjct: 233 GPSRFHRLDYAPVK 246 >gi|56713262|gb|AAW23358.1| ribonuclease HIIA [Leishmania major] Length = 296 Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRI-AHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 V+KGD+ LSIAAASI+AKV RD H +P YGFD H GY TA H+ + Sbjct: 201 CTTVVKGDATLLSIAAASIVAKVARDAYAVSVMHPAFPQYGFDHHKGYCTAAHKAELARW 260 Query: 192 GPSCIHRLTFRPLR 205 GPS HRL + P++ Sbjct: 261 GPSRFHRLDYAPVK 274 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKIT 76 + V G+DE GRG +AGPV VAA + + P + + DSKK+ R E E + Sbjct: 15 IRYVIGVDEAGRGCMAGPVGVAATLYRISATPVRYAVMDSKKMKESDRAETLEAMC 70 >gi|159467162|ref|XP_001691767.1| predicted protein [Chlamydomonas reinhardtii] gi|158279113|gb|EDP04875.1| predicted protein [Chlamydomonas reinhardtii] Length = 266 Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 27/209 (12%) Query: 26 VAGIDEVGRGALAGPVVVAAII--LDPNNIPFGINDSKKISHKKREELYEKIT------S 77 + G+DE GRG + GP+V A + + G DSK ++H+ RE+L++ I Sbjct: 37 ILGVDEAGRGPVLGPMVYACAFTSVSTDISSRGYADSKTLTHETREKLFKAIDADSGVGW 96 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAV------------ENLQVIPRSALIDGRSI 125 A I + ++ + A + + + R Sbjct: 97 VAHIMSAQFISGHMLGRDKTSLNALAFDATCAIIRRALESGANVYVDTVGDADRHRDRLS 156 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY-PTAKH 184 K DS+ ++AASI+AKV RD+ + + K G + GY + Sbjct: 157 RAFPGLDFTVCPKADSLYPIVSAASIVAKVIRDKSLTDSQKSLGLTG-EVGTGYPGDSAT 215 Query: 185 QQVIKEK-----GPSCIHRLTFRPLRNLS 208 +K+ G + R ++ + Sbjct: 216 TTWLKQHMHPLWGFPRLVRHSWETCSRML 244 >gi|242010277|ref|XP_002425895.1| ribonuclease hi large subunit, putative [Pediculus humanus corporis] gi|212509871|gb|EEB13157.1| ribonuclease hi large subunit, putative [Pediculus humanus corporis] Length = 271 Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 85/243 (34%), Gaps = 47/243 (19%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFG 56 +F ++IP E E + G+DE GRG + GP+V + N+ G Sbjct: 33 LFNSNIP-------EKCFLE---PCILGVDEAGRGPVLGPMVYSVFFCSINDADILKDIG 82 Query: 57 INDSKKISHKKREELYEKITSSAI---ISISSASHQYIDKHNIHKATLDAIYHAVE---- 109 DSK ++ KKRE++++ I + ++ S I + + A Sbjct: 83 CTDSKVLTEKKREDIFDLINQNNDKLGWAVDLLSPNLISNRMLQRKKYSLNEIAQNSTIK 142 Query: 110 ---------------NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 + I + + + K D + + AASI AK Sbjct: 143 LIESLLEKNITLKDIFVDTIGPADKYQEKLSKLFPNSKVTVKSKADLLYPVVGAASICAK 202 Query: 155 VTRDRLMRIAHKKYPD---YGFDSHVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLR 205 V RD ++ K+P+ + GY K ++ + E G + R ++ Sbjct: 203 VIRDTAVQQW--KFPEKITIDAEFGTGYPGDPKTKKFLLESKDSVFGFPNLVRFSWSTSA 260 Query: 206 NLS 208 L Sbjct: 261 KLL 263 >gi|227545838|ref|ZP_03975887.1| possible ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213954|gb|EEI81793.1| possible ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 275 Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIK 189 +KGD ++A A++IAKVTRDRLM + +Y Y + + GY +A H+ I Sbjct: 201 ITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAAYEWAHNKGYGSAAHRAAIA 260 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR+++ Sbjct: 261 EHGPTPLHRVSW 272 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 20/110 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAIILDPNNIPF------------- 55 P +LE + + + G DEVGRGALAGPV+V A I + P Sbjct: 4 PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63 Query: 56 -----GINDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA 99 G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYA 113 >gi|297517117|ref|ZP_06935503.1| ribonuclease HII [Escherichia coli OP50] Length = 69 Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 39/58 (67%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 VAG+DEVGRG L G VV AA+ILDP G+NDSKK+S K+R L E+I A+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEEIKEKALSW 68 >gi|312133301|ref|YP_004000640.1| rnhb [Bifidobacterium longum subsp. longum BBMN68] gi|311772513|gb|ADQ02001.1| RnhB [Bifidobacterium longum subsp. longum BBMN68] Length = 275 Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK---KYPDYGFDSHVGYPTAKHQQVIK 189 +KGD ++A A++IAKVTRDRLM + +Y Y + + GY +A H+ I Sbjct: 201 ITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAAYEWAHNKGYGSAAHRAAIA 260 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR+++ Sbjct: 261 EHGPTPLHRVSW 272 Score = 78.9 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 20/110 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAIILDPNNIPF------------- 55 P +LE ++ + +AG DEVGRGALAGPV+V A I + P Sbjct: 4 PTLDLERILAAQGYDLIAGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 56 -----GINDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA 99 G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYA 113 >gi|254445906|ref|ZP_05059382.1| ribonuclease HII [Verrucomicrobiae bacterium DG1235] gi|198260214|gb|EDY84522.1| ribonuclease HII [Verrucomicrobiae bacterium DG1235] Length = 250 Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 38/83 (45%), Positives = 48/83 (57%) Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 + L+ + L + AV+KGDS SL IA ASIIAKVTRDR+M +YP Y S Sbjct: 147 QWRLLVDGKPMKHLGFKHEAVVKGDSKSLCIAMASIIAKVTRDRIMMALDCEYPHYDLAS 206 Query: 176 HVGYPTAKHQQVIKEKGPSCIHR 198 GY T H+ I + GP+ IHR Sbjct: 207 SKGYATVLHRTAILDNGPTKIHR 229 >gi|269986419|gb|EEZ92706.1| ribonuclease HII [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 218 Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 71/210 (33%), Gaps = 35/210 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAIIS 82 GIDE GRG + GP+ +A I + + G+ DSK +S K+ L +I S+ Sbjct: 4 IGIDEAGRGPVIGPMTIAGIGIGEDLAQKFKLIGVKDSKMLSIKRIYLLEREIIKSSNNF 63 Query: 83 ISSASHQYIDKHNIHKATLDAI--------------YHAVENLQVIPRSALIDGRSIPED 128 + V + I + Sbjct: 64 KVIKLSAEEIDNRFENGKNLNYLELDNMAEIANNLAGETVVIDSPSRNTEKIRLYLSKKI 123 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQV 187 + A D + ++AASIIAK R+R + K+ Y F GYP+ K Q Sbjct: 124 KDKKIIAENYADKNHIEVSAASIIAKANREREVEKIKKEL-GYDF--GSGYPSDPKTIQF 180 Query: 188 IKEKGPS-----------CIHRLTFRPLRN 206 IK + R T+ ++N Sbjct: 181 IKI--ITENERINQEPYKKFVRKTWNTVKN 208 >gi|296453566|ref|YP_003660709.1| ribonuclease H [Bifidobacterium longum subsp. longum JDM301] gi|296182997|gb|ADG99878.1| Ribonuclease H [Bifidobacterium longum subsp. longum JDM301] Length = 275 Score = 78.9 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY---GFDSHVGYPTAKHQQVIK 189 +KGD ++A A++IAKVTRDRLM + P Y + + GY +A H+ I Sbjct: 201 ITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPRYAVYEWAHNKGYGSAAHRAAIA 260 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR+++ Sbjct: 261 EHGPTPLHRVSW 272 Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 20/110 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAIILDPNNIPF------------- 55 P +LE + + + G DEVGRGALAGPV+V A I + P Sbjct: 4 PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWACDLAPLDGDDSAELSGRTY 63 Query: 56 -----GINDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA 99 G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYA 113 >gi|242082852|ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor] gi|241942544|gb|EES15689.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor] Length = 297 Score = 78.9 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 37/222 (16%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 + GIDE GRG + GP+V + + DSK + ++REEL+E Sbjct: 8 WATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNNTLSTLKFADSKTLKEEQREELFES 67 Query: 75 ITSSAI--ISISSASHQ------------YIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 + ++ + + +++ + + A + + Sbjct: 68 LKVNSSIGWEVDVICPKDLSAKMLKKSKVNLNEISHNSAMGLVRKVLDMGILLAEVYIDT 127 Query: 121 DGRSIPE-------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 G + K DS+ ++ ASI+AKVTRDR +R + + Sbjct: 128 VGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNW--VFDETAL 185 Query: 174 DSH----VGY-PTAKHQQVIKEK-----GPSCIHRLTFRPLR 205 H GY +Q +++ G + R ++ + Sbjct: 186 SLHMKTGSGYPGDPDTKQWLEDHKHPVFGFPTLVRFSWGTCK 227 >gi|291533380|emb|CBL06493.1| Ribonuclease HII [Megamonas hypermegale ART12/1] Length = 101 Score = 78.9 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 21/41 (51%), Positives = 26/41 (63%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN 52 + E R +AG+DEVGRG LAGPVVVA++IL N Sbjct: 56 YTFENECRANGYKLIAGVDEVGRGPLAGPVVVASVILPENF 96 >gi|125533439|gb|EAY79987.1| hypothetical protein OsI_35154 [Oryza sativa Indica Group] Length = 298 Score = 78.9 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 33/219 (15%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 + GIDE GRG + GP+V + + DSK + ++REEL+E Sbjct: 9 WATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQREELFES 68 Query: 75 ITSSAI--ISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQV 113 + ++ + + + + +A + A + Sbjct: 69 LKDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALDMGVLLAEVYIDT 128 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDY 171 + + + + + K DS+ ++ ASI++KVTRDR +R + + Sbjct: 129 VGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQNM 188 Query: 172 GFDSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPL 204 ++ GY +Q +++ G + R ++ Sbjct: 189 HMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFSWGTC 227 >gi|115484243|ref|NP_001065783.1| Os11g0153900 [Oryza sativa Japonica Group] gi|62701661|gb|AAX92734.1| ribonuclease HII, putative [Oryza sativa Japonica Group] gi|77548724|gb|ABA91521.1| ribonuclease HI large subunit, putative, expressed [Oryza sativa Japonica Group] gi|113644487|dbj|BAF27628.1| Os11g0153900 [Oryza sativa Japonica Group] gi|125576251|gb|EAZ17473.1| hypothetical protein OsJ_33004 [Oryza sativa Japonica Group] Length = 298 Score = 78.9 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 79/219 (36%), Gaps = 33/219 (15%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 + GIDE GRG + GP+V + + DSK + ++REEL+E Sbjct: 9 WATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQREELFES 68 Query: 75 ITSSAI--ISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQV 113 + ++ + + + + +A + A + Sbjct: 69 LKDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALDMGVLLAEVYIDT 128 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDY 171 + + + + + K DS+ ++ ASI++KVTRDR +R + + Sbjct: 129 VGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDETAQNM 188 Query: 172 GFDSHVGY-PTAKHQQVIKEK-----GPSCIHRLTFRPL 204 ++ GY +Q +++ G + R ++ Sbjct: 189 HMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFSWGTC 227 >gi|289582357|ref|YP_003480823.1| ribonuclease HII [Natrialba magadii ATCC 43099] gi|289531910|gb|ADD06261.1| ribonuclease HII [Natrialba magadii ATCC 43099] Length = 221 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 75/207 (36%), Gaps = 28/207 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-PFGINDSKKISHKKREELYEKITSSAIISISS 85 G+DE G+G + G + AA+ ++ + P GI DSK+++ +R+EL + I + Sbjct: 3 IGVDEAGKGPVLGSMFAAAVHVERETVLPDGIADSKRLTPARRDELAATLREDDRIGVGV 62 Query: 86 A--------SHQYIDKHNIHKATLDAIY------------HAVENLQVIPRSALIDGRSI 125 A + +A +AI + + + Sbjct: 63 AEITTAQIDDPETDMNSLSVRAHAEAIEAVAADTVLEAPITGLCDACDTDADRFARRVAD 122 Query: 126 PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184 L C A D S + AASIIAKV RD + +PD G GYP+ Sbjct: 123 RCGLECTISAEHGADDDSPIVGAASIIAKVERDTHVESVSAAFPDCG-PVGSGYPSDPNT 181 Query: 185 QQVIKEK-----GPSCIHRLTFRPLRN 206 + ++ R ++ + Sbjct: 182 RAFLESYVDAHGELPACARESWSTCED 208 >gi|148665343|gb|EDK97759.1| phosphatidylinositol glycan anchor biosynthesis, class Z [Mus musculus] Length = 799 Score = 78.5 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 19/181 (10%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKIT---SS 78 V G+DE GR + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 30 VLGVDEAGRAPVLGPMVYAICYCPLSRLADPEALKVADSKTLTENERERLFTKMEEDGDF 89 Query: 79 AIISISSASHQYIDKHNIHKA-TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 S+ S I + + ++I + I G I + Sbjct: 90 VGWSLDVLSPNLISISMLGRVKYNLNSLSHDTAAELIWNARDIPGSIITALSGIEVTVKA 149 Query: 138 KGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE 190 K DS+ ++AASI AKVTRD+ + I DYG GYP+ K + ++ Sbjct: 150 KADSLFPVVSAASIFAKVTRDKAVKNWQFVEILQDLDSDYG----SGYPSDPKTKAWLRR 205 Query: 191 K 191 Sbjct: 206 H 206 >gi|195388322|ref|XP_002052829.1| GJ19740 [Drosophila virilis] gi|194149286|gb|EDW64984.1| GJ19740 [Drosophila virilis] Length = 339 Score = 78.1 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V G DSK+++ +KRE ++ + + Sbjct: 66 GVDEAGRGPVLGPMVYGISYCPLERKSALVELGCADSKQLTEEKREIIFNDLNTLEYANS 125 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 126 CIGWAVEIISPNVISSSMYRRTKCSLNEVSMDSAMGLIQEAIDAGVNIAEVYVDTVGPPE 185 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ ++P+ G Sbjct: 186 KYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--QFPE-GLIIKDN 242 Query: 174 DSHVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLRN 206 GY ++ + E G + R ++ N Sbjct: 243 AFGSGYPGDPVTKRFLTENIDLVFGFPRLVRFSWSTAEN 281 >gi|213691335|ref|YP_002321921.1| Ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522796|gb|ACJ51543.1| Ribonuclease H [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457405|dbj|BAJ68026.1| ribonuclease HII [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 279 Score = 78.1 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP---DYGFDSHVGYPTAKHQQVIK 189 +KGD ++A A++IAKVTRDRLM + P Y + + GY +A H+ I Sbjct: 205 ITTKVKGDQHCATVATAAVIAKVTRDRLMVDLAQSNPCYAAYEWAHNKGYGSAAHRTAIA 264 Query: 190 EKGPSCIHRLTF 201 E GP+ +HR+++ Sbjct: 265 EHGPTPLHRVSW 276 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 20/110 (18%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRGALAGPVVV-AAIILDPNNIPF------------- 55 P +LE + + + G DEVGRGALAGPV+V A I + P Sbjct: 4 PTLDLERSLAAQGYDLITGFDEVGRGALAGPVMVGCAAIWARDLEPLDGDDAVELSGRTY 63 Query: 56 -----GINDSKKISHKKREELYEKIT-SSAIISISSASHQYIDKHNIHKA 99 G+ DSK ++ +RE +++++ A ++ AS+ ID+ I A Sbjct: 64 LGVPDGVADSKMLTEHRREAIFDELRDWCAAYAVGQASNTEIDEWGITYA 113 >gi|324575207|gb|ADY49933.1| Ribonuclease HII [Ascaris suum] Length = 60 Score = 78.1 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 38/58 (65%) Query: 144 LSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTF 201 ++I ASI+AKV RD+ M KKYP YG++ H GY T H I++ GPS HRLT+ Sbjct: 1 MAIKLASIVAKVRRDKYMARLAKKYPHYGYEIHKGYGTKAHMAAIRKHGPSAAHRLTY 58 >gi|50551451|ref|XP_503199.1| YALI0D23661p [Yarrowia lipolytica] gi|49649067|emb|CAG81399.1| YALI0D23661p [Yarrowia lipolytica] Length = 315 Score = 77.7 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 74/221 (33%), Gaps = 43/221 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKITSSAI 80 + G+DE GRG + G +V G DSK ++ +KR L +I Sbjct: 43 ILGVDEAGRGPVLGSMVYGLAYCTKEFADEELSKTGFADSKTLTAEKRSALMREICCDET 102 Query: 81 -ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI------------------- 120 + + +I A L + V NL + Sbjct: 103 LVEHLGWCTTSMTAQDISSAMLRPMSRGVYNLNDQAHDTTMALIQGVLDRGVLLTEAYID 162 Query: 121 --------DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 + + + K DS+ ++AASI AKVTRD ++ +G Sbjct: 163 TVGPPASYTAKLSKQFPHIKFTVTKKADSLFPIVSAASICAKVTRDMDLKSQDLSEGTWG 222 Query: 173 FDSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 GYP+ K +K G + R +++ ++L Sbjct: 223 ----SGYPSDPKTSVWLKSHVDQVFGWMPVVRFSWQTAKDL 259 >gi|332797850|ref|YP_004459350.1| ribonuclease HII [Acidianus hospitalis W1] gi|332695585|gb|AEE95052.1| ribonuclease HII [Acidianus hospitalis W1] Length = 192 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 24/188 (12%) Query: 41 VVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYIDKHN 95 +V+A +I+D G+ DSK +S +KRE+L+E I+ A ++ A ID N Sbjct: 1 MVIAGVIIDEKIEGMLKEVGVKDSKILSREKREKLFEIISEFAEAYIVNKAYPNEIDSSN 60 Query: 96 IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC--------QAFAVIKGDSISLSIA 147 +++ T + + + + + ED+ + V D + + Sbjct: 61 LNELTYSKVIQIIYASLPLHPKIVTIDKVGNEDIVIMKIRELGLKDNVVFNADVKYIEAS 120 Query: 148 AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVI------KEKGPSCIHRLT 200 AASIIAKVTRDR++ K Y D+G GYP+ K ++ I + P I R T Sbjct: 121 AASIIAKVTRDRIIDSLKKIYGDFG----SGYPSDPKTRKWIIEIYEKDKNNPPPIIRRT 176 Query: 201 FRPLRNLS 208 ++ L ++ Sbjct: 177 WKTLLKIA 184 >gi|326431468|gb|EGD77038.1| ribonuclease [Salpingoeca sp. ATCC 50818] Length = 421 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 47/224 (20%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKI-----T 76 + G+DE GRG + GP+V G DSK + ++RE L+ ++ Sbjct: 127 ILGVDEAGRGPVCGPMVYGVAFAPKPMEKTLKNMGFTDSKVVKEEERERLFTEMKSGSLH 186 Query: 77 SSAIISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPRS 117 + S S I I + + + + Sbjct: 187 GKMGWKVHSLSPNTISTGMLARQKYSLNELSHDTCIGLIRRCLDQGVNLEAVYVDTVGPD 246 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP-------D 170 + + + K DS + ++AASI AKV RD ++ ++P + Sbjct: 247 TVYQAKLQGIFPQLKITVSKKADSKYVIVSAASICAKVVRDHVLSAW--RHPERIGANTE 304 Query: 171 YGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 YG GYP+ K + ++ G + R +++ + L Sbjct: 305 YG----CGYPSDPKTKAWLRANIDKVFGFPSVVRFSWQTAQTLL 344 >gi|240147025|ref|ZP_04745626.1| ribonuclease HII [Roseburia intestinalis L1-82] gi|257200803|gb|EEU99087.1| ribonuclease HII [Roseburia intestinalis L1-82] Length = 116 Score = 77.7 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 33 GRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAI-ISISSASHQYI 91 GRG LAGPVV A+IL + INDSKK++ KREELY++I A+ I S Q I Sbjct: 2 GRGPLAGPVVAGAVILPKDCDILYINDSKKLTAVKREELYDEIMEKAVAAGIGMVSPQRI 61 Query: 92 DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA 147 D+ NI +AT +A+ A+ L+ P L D + ++ +IKGD+ S+SI Sbjct: 62 DEINILQATYEAMREAISKLEPAPDILLNDAVT-IPEVTIPQVPIIKGDAKSISIG 116 >gi|170049569|ref|XP_001857534.1| ribonuclease H2 subunit A [Culex quinquefasciatus] gi|167871354|gb|EDS34737.1| ribonuclease H2 subunit A [Culex quinquefasciatus] Length = 334 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 79/218 (36%), Gaps = 39/218 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI- 80 V G+DE GRG + GP+V + G DSK+++ +KRE +++++ Sbjct: 60 VLGVDEAGRGPVLGPMVYGIAFSPIDKKDVLKKLGFADSKQLTEEKREHIFDEMNKQDFA 119 Query: 81 -----ISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPR 116 ++ S I IHKA + A + + Sbjct: 120 TESIGWAVEVISPNDISMSMLRRSKRSLNEVSMDSAIGLIHKAIEAGVNIAEVYVDTVGP 179 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK---YPDYGF 173 + + K DS L ++AASI AKV+RD +++ + P+ F Sbjct: 180 PEKYQAKLKLIFPNFKITVAKKADSTYLIVSAASICAKVSRDHALKVWKFREGTDPEVKF 239 Query: 174 DSHVGYP----TAKHQ-QVIKEKGPSCIHRLTFRPLRN 206 GYP T K + G + R ++ N Sbjct: 240 --GSGYPGDPVTKKFLGDFDRVFGFPRLVRFSWSTASN 275 >gi|170099025|ref|XP_001880731.1| predicted protein [Laccaria bicolor S238N-H82] gi|164644256|gb|EDR08506.1| predicted protein [Laccaria bicolor S238N-H82] Length = 302 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 53/230 (23%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKRE----------- 69 + G+DE GRG + GP+V + G DSK ++ R Sbjct: 34 YIVGVDEAGRGPVLGPLVYGIAYCPASYKEDMEELGFADSKTLNSDTRLSLLNTLSSQPE 93 Query: 70 ---ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAV--------ENLQVIPRSA 118 ++ AI S AT+ + + + + + Sbjct: 94 NLGWSVRVVSPQAISSGMLCRPPTNLNRQSQDATILLLREVLAKGIQVSEVYVDALGTTT 153 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH-- 176 + K DS + AAS+ AKVTRD + + F+ + Sbjct: 154 TYEAYLSSLFPGIDFTVTTKADSKFKIVGAASVAAKVTRDACVE-------GWTFEENIG 206 Query: 177 ------------VGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP+ Q +K G + R ++ ++ + Sbjct: 207 KEGDKWSNATLGSGYPSDPNTQAWLKGSVDPVFGFPKLVRFSWTTVKVIL 256 >gi|195118270|ref|XP_002003663.1| GI18036 [Drosophila mojavensis] gi|193914238|gb|EDW13105.1| GI18036 [Drosophila mojavensis] Length = 342 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V N+ G DSK+++ +KR+ ++ + + Sbjct: 69 GVDEAGRGPVLGPMVYGISYCPLNSKEALVELGCADSKQLTEEKRDIIFNDMNTLEYANS 128 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 129 CIGWAVEIISPNVISNSMYRRSKCSLNEVSMDSAMGLIQRAIDAGVNIAEVYVDTVGPPE 188 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ ++P+ G Sbjct: 189 KYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--QFPE-GLVIKDN 245 Query: 174 DSHVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLRN 206 GY ++ + E G + R ++ N Sbjct: 246 AFGSGYPGDPVTKRFLTENIDLVFGFPRLVRFSWSTAEN 284 >gi|167394469|ref|XP_001740978.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760] gi|165894666|gb|EDR22579.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760] Length = 270 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 78/217 (35%), Gaps = 38/217 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAII--- 81 GIDE GRG + GP+V +A I G +DSK +S RE+L+ I SA+ Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFTTNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCGFS 76 Query: 82 ----------------------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 I+ + + I I ++ + + + + Sbjct: 77 TRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRINQRKIVHIYCDTVGPSGKYQM 136 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV-- 177 + + Q K D + ++AASI AKVTRD + Y + + Sbjct: 137 MIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCLDNW--IYEERNIQTRKVG 194 Query: 178 -GYPTA-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207 GYP+ + +K G + R + + + Sbjct: 195 CGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETSKRI 231 >gi|71031853|ref|XP_765568.1| ribonuclease H1 large subunit [Theileria parva strain Muguga] gi|68352525|gb|EAN33285.1| ribonuclease H1 large subunit, putative [Theileria parva] Length = 277 Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 43/227 (18%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-------IPFGINDSKKISHKKREELY 72 K+ + GIDE GRG + GP+V + ++DSKK++ RE + Sbjct: 19 SKSDEVILGIDEAGRGPVLGPMVYGGFFCIKGDDCKSILKNKIRVDDSKKLTETMRENKF 78 Query: 73 EKITS-------SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL------ 119 ++ A + + + + + + A+ ++ + Sbjct: 79 YQLNDPNYPFGVVAEVITPQYISYKMLQRDKYNLNEISHDTAISIIRHVLDHGYNLKEVY 138 Query: 120 ---------IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + + K DSI +++AASI+AKV RD +++ Sbjct: 139 IDAVGTVNKYEAKLSKLFPKIHFSVREKADSIYPTVSAASIVAKVIRDNIIKNW-----K 193 Query: 171 YGFD---SHVGYP----TAKHQ--QVIKEKGPSCIHRLTFRPLRNLS 208 + F+ GYP T + K G I R ++ +L Sbjct: 194 FDFEVENIGSGYPGDPYTKDFLTNNMDKIFGFPDIVRYSWSTASHLL 240 >gi|262200028|ref|YP_003271237.1| ribonuclease HII/HIII [Haliangium ochraceum DSM 14365] gi|262083375|gb|ACY19344.1| ribonuclease HII/HIII [Haliangium ochraceum DSM 14365] Length = 246 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 66/196 (33%), Gaps = 22/196 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDPN----------NIPFGINDSKKISHKKREELYEKITS 77 GIDE GRG + GP+V+AA+ LD S K + E E Sbjct: 19 GIDEAGRGPVLGPMVMAAVCLDSGGARWLTRTGVRDSKAFGASSKARSARAELAAEVSAR 78 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVEN-----LQVIPRSALIDGRSIPEDLPCQ 132 + + ID+ E V A P Sbjct: 79 AVHAEVQVIDVAVIDRRVRRHELNLLEREIAEQLIARAPAVDAIIADGKNLFRPLSQRYP 138 Query: 133 A-FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY-PDYGFDSHVGY---PTAKHQQV 187 A G++ S+AAASI+AK RD L ++Y P +G GY T + + Sbjct: 139 HLEACDGGEARHASVAAASILAKHRRDELFACIAQRYQPLFGELRGGGYVNEATRRFLRA 198 Query: 188 -IKEKG-PSCIHRLTF 201 ++ G R ++ Sbjct: 199 HVERFGRLPPEARRSW 214 >gi|290991286|ref|XP_002678266.1| predicted protein [Naegleria gruberi] gi|284091878|gb|EFC45522.1| predicted protein [Naegleria gruberi] Length = 245 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 75/228 (32%), Gaps = 48/228 (21%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI-------PFGINDSKKISHKKREELYEKITS 77 V GIDE GRG + GP+V A + F +NDSKK++ K RE++++ + Sbjct: 13 YVMGIDEAGRGPVLGPLVYACMFCKSKYNTDNFLKKTFHVNDSKKLTAKMREKIFKTLKE 72 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV- 136 ++ I D+ + + + + ++ + Sbjct: 73 NSKIVHYITCIVQSDEISHKMLSRKKYNLNLISHDCAIHLIKTASETLSKKGKYLKEVYI 132 Query: 137 --------------------------IKGDSISLSIAAASIIAKVTRDRLMRIA-HKKYP 169 K DS + ASI+AKV RD ++ KY Sbjct: 133 DTVGDPKKYQAKLQEKFPEIESIVVDKKADSKYPVVGGASIVAKVKRDEIVEEIQSLKYS 192 Query: 170 DYGFDSHVGY----PTAKHQ-QVIKE-KGPSCIH---RLTFRPLRNLS 208 GY T + + + G H R ++ ++ + Sbjct: 193 K--LKMGSGYTSDKYTKDFLNKALDKVFGY--HHTDVRFSWSTIKKIL 236 >gi|330791509|ref|XP_003283835.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum] gi|325086221|gb|EGC39614.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum] Length = 289 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 70/219 (31%), Gaps = 40/219 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAI 80 + GIDE GRG + GP+V + NDSKK++ ++R L++K+ S Sbjct: 17 FIMGIDEAGRGPVMGPLVYGCCFAPISETATISKMKFNDSKKLTEQQRNHLFQKMCDSNK 76 Query: 81 I---------------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 I + ++ + A + + V G Sbjct: 77 ILGFEVDVISPEILSEKMLLKKPISLNVISHESAMGLIRSVLSKGINVQELYLDTVGTPA 136 Query: 126 PEDLPCQAFAV--------IKGDSISLSIAAASIIAKVTRDRLM-------RIAHKKYPD 170 + K DS+ ++AASI AKV RD + + Sbjct: 137 TYQAMLKNHFPEISKIVVSKKADSLYPIVSAASICAKVIRDHEITSKNFDDLEIQDEDDQ 196 Query: 171 YGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRP 203 + GYP+ + + + G R ++ Sbjct: 197 LSTEFGSGYPSDPVTKFWLTKNRDKVFGYPSFIRFSWST 235 >gi|19114596|ref|NP_593684.1| ribonuclease H2 complex subunit Rnh201 (predicted) [Schizosaccharomyces pombe 972h-] gi|1723422|sp|Q10236|RNH2A_SCHPO RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|1204203|emb|CAA93552.1| ribonuclease H2 complex subunit Rnh201 (predicted) [Schizosaccharomyces pombe] Length = 326 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 42/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITSSAIISISS 85 G+DE GRG + GP+V A + +G DSK ++ KREEL + I + + + Sbjct: 67 GVDEAGRGPVLGPMVYAVAYCPVDFDLTNYGFADSKTLASLKREELLKLICNKSNELGKN 126 Query: 86 ASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL-------------------------- 119 + A Y NL + Sbjct: 127 VGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPI 186 Query: 120 -IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + + K DS+ ++ ASI AKVTRD + A + + G Sbjct: 187 SYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQLECARESIRTENW--GSG 244 Query: 179 YPT-AKHQQVIKEK--------GPSCIHRLTFRPLRNLS 208 Y + A+ + +K G I R +++ ++L Sbjct: 245 YSSDARTTEWLKVNVDKIFGWKG--DIVRYSWKTAKDLL 281 >gi|321469942|gb|EFX80920.1| hypothetical protein DAPPUDRAFT_230884 [Daphnia pulex] Length = 307 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 72/221 (32%), Gaps = 40/221 (18%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY---EKITSSAI 80 GIDE GRG + GP+V + G DSK ++ ++RE+L+ + + Sbjct: 34 GIDEAGRGPVLGPMVYGITYCPESRAEELKAIGCADSKTLTEEQREKLFGKLDSLQDFVG 93 Query: 81 ISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSALID 121 ++ S I + KA + + Sbjct: 94 WAVEVISPNSICNNMFKRLKHSLNEVSHDSAIGLIRKALSLEANITSVFVDTVGPPEKYQ 153 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH-KKYPDYGFDS----- 175 + + K DS+ ++AASI AKV RD+ + K+ P + Sbjct: 154 AKLSALFPGIKITVSKKADSLFPVVSAASICAKVARDKALSTWKFKESPFISLKAESQEL 213 Query: 176 --HVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GY ++ + + G + R ++ + Sbjct: 214 KWGSGYPGDPTTKKFLAQNIDGVFGFPQLVRFSWSTSEQIL 254 >gi|157136849|ref|XP_001656938.1| ribonuclease hi large subunit [Aedes aegypti] gi|108880967|gb|EAT45192.1| ribonuclease hi large subunit [Aedes aegypti] Length = 335 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 39/215 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI- 80 V G+DE GRG + GP+V G DSK+++ +KR+ +++++ Sbjct: 61 VLGVDEAGRGPVLGPMVYGIAFCPITKKEVLKKLGFADSKQLTEEKRDVIFDEMNQKDYA 120 Query: 81 -----ISISSASHQYIDKHN-------------------IHKATLDAIYHAVENLQVIPR 116 ++ + I I KA + A + + Sbjct: 121 VESIGWAVEVIAPNDICMSMLRRTKRSLNEVSMDSAIGLIRKAIEAGVNIAEVYVDTVGP 180 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK---YPDYGF 173 + + K DS ++AASI AKV+RD +++ + P F Sbjct: 181 PEKYQAKLKQIFPKFKITVAKKADSTYPIVSAASICAKVSRDHALKVWSFREGLEPGINF 240 Query: 174 DSHVGY-PTAKHQQVIKEK----GPSCIHRLTFRP 203 GY + + G + R ++ Sbjct: 241 --GSGYPGDPVTKNFLGTYDLVFGFPRLVRFSWST 273 >gi|195456019|ref|XP_002074967.1| GK22869 [Drosophila willistoni] gi|194171052|gb|EDW85953.1| GK22869 [Drosophila willistoni] Length = 336 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 79/219 (36%), Gaps = 43/219 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS------ 77 G+DE GRG + GP+V + I G DSK+++ +KR+ ++ ++ + Sbjct: 63 GVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDIIFNELNTLDYATE 122 Query: 78 SAIISISSASHQYIDKHNI-------------------HKATLDAIYHAVENLQVIPRSA 118 ++ S I +A + A + + Sbjct: 123 CIGWAVEIISPNVISSSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVQIAEVYVDTVGPPE 182 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF----- 173 + + + K DS ++AASI AKVTRD +++ K+P+ G Sbjct: 183 KYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVW--KFPE-GLVIKDN 239 Query: 174 DSHVGYP----TAKHQ-QVIKE-KGPSCIHRLTFRPLRN 206 GYP T + + I G + R ++ N Sbjct: 240 AFGSGYPGDPVTKRFLVENIDLVFGFPRLVRFSWSTAEN 278 >gi|167378158|ref|XP_001734698.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760] gi|165903720|gb|EDR29164.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760] Length = 270 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 79/217 (36%), Gaps = 38/217 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAII--- 81 GIDE GRG + GP+V +A I G +DSK +S RE+L+ I SA+ Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFTTNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCGFS 76 Query: 82 ----------------------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 I+ + + I I + ++ + + + + Sbjct: 77 TRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRISQRKIVHIYCDTVGPSGKYQM 136 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS---H 176 + + Q K D + ++AASI AKVTRD + Y + + Sbjct: 137 MIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCLDNW--IYEERNIQTKQVG 194 Query: 177 VGYPTA-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207 GYP+ + +K G + R + + + Sbjct: 195 CGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETSKRI 231 >gi|313125351|ref|YP_004035615.1| rnase hii [Halogeometricum borinquense DSM 11551] gi|312291716|gb|ADQ66176.1| RNase HII [Halogeometricum borinquense DSM 11551] Length = 224 Score = 76.2 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 25/202 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSA 86 G DE G+G + GP+V AA+ + +P GI+DSK+++ +REE+ + + +++ A Sbjct: 9 IGSDEAGKGPVLGPMVAAAVRAPADALPDGIDDSKRLTSAQREEIDQTLRGRDDVTVGVA 68 Query: 87 SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED------------------ 128 + + + A + + D Sbjct: 69 TIDPVRIDDPTTDMNSLTVAAHVAAVAAVAQDADEVVTDAGDVDESRFGRRVRTGVGDEG 128 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQV 187 + + D + AAS++AKV RD LM ++Y DYG GYP+ ++ Sbjct: 129 TDVTVVSEHRADETYPHVGAASVVAKVRRDTLMETIGERYEDYG-PVGSGYPSDPTTREF 187 Query: 188 IKEK-----GPSCIHRLTFRPL 204 ++ R ++ Sbjct: 188 LRTYVSETGELPDCARASWATC 209 >gi|242094016|ref|XP_002437498.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor] gi|241915721|gb|EER88865.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor] Length = 297 Score = 76.2 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 80/220 (36%), Gaps = 35/220 (15%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 + GIDE GRG + GP+V + + DSK + ++REEL+E Sbjct: 8 WATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNNTLATLKFADSKTLKEEQREELFES 67 Query: 75 ITSSAI--ISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQV 113 + ++ + + + + K+ ++ + + Sbjct: 68 LKVNSSIGWEVDVICPKDLSAKMLRKSKVNLNEISHNSAMGLVRKLLDMGVLLAEVYIDT 127 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA--HKKYPDY 171 + + + + K DS+ ++ ASI+AKVTRDR +R + + Sbjct: 128 VGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDETALNM 187 Query: 172 GFDSHVGYP--TAKHQQVIKEK-----GPSCIHRLTFRPL 204 + GYP T +Q +++ G + R ++ Sbjct: 188 HMKTGSGYPGDT-DTKQWLQDHKHPVFGFPTLVRFSWGTC 226 >gi|66801163|ref|XP_629507.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4] gi|74896782|sp|Q54D13|RNH2A_DICDI RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A gi|60462898|gb|EAL61095.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4] Length = 289 Score = 75.8 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 77/219 (35%), Gaps = 40/219 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI 80 V GIDE GRG + GP+V + NDSKK++ ++R++L++K+ S Sbjct: 21 FVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGESNK 80 Query: 81 I---------------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDG--- 122 I + ++ + A + + V G Sbjct: 81 ILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVGPPD 140 Query: 123 -----RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD-YG---- 172 + K DS+ ++AASI AKV RD + + Y + Y Sbjct: 141 KYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQDEQ 200 Query: 173 --FDSHVGYPT-AKHQQVI-----KEKGPSCIHRLTFRP 203 D GYP+ ++ + K G R +++ Sbjct: 201 LSTDFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKT 239 >gi|66817316|ref|XP_642511.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4] gi|60470610|gb|EAL68588.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4] Length = 507 Score = 75.8 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 83/233 (35%), Gaps = 37/233 (15%) Query: 3 CNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GIN 58 +++ +P + + +DE G+GAL GP+ ++ ++LD + + G+ Sbjct: 113 VDNLMVQPKTSYKDKLEVFEEVLSISMDEAGKGALLGPLFISCVVLDDESEKYLKSMGVT 172 Query: 59 DSKKISHKKREELYEKITSSAIIS---------ISSASHQYIDKHNIHKATLDAIYHAVE 109 DSKK+S K+RE LY+ I A+ I + I ++ Sbjct: 173 DSKKLSPKRREYLYDIIIEHALYYQTIILTSEKIDQRRELHTMNQIETNLFYQLIKDSIN 232 Query: 110 NLQVIPRSALIDGRSIPEDLPCQA-------------FAVIKGDSISLSIAAASIIAKVT 156 NL + +I + K D +S+ AASIIAKV Sbjct: 233 NLPKNQQCKIIIDSIEMNTQKYSQPFKMEFPPPLYQIYCETKADHKFISVGAASIIAKVE 292 Query: 157 RDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKGPSCIH------RLTFR 202 RDR M+ GYP+ + + R +++ Sbjct: 293 RDRWMKQLETNTSHI---IGSGYPSDPLTISYVNNF-FKKYYVYPNSMRKSWK 341 >gi|218883330|ref|YP_002427712.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n] gi|218764946|gb|ACL10345.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n] Length = 255 Score = 75.4 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 35/213 (16%) Query: 27 AGIDEVGRGALAGPVVVAAII-LDPNNIPF---GINDSKKISHKKREELYEKI------- 75 G+DE GRG G +V+A +I L G+ DSK + KR + + Sbjct: 9 IGVDEAGRGPFIGDMVIAGVIGLSSAFESLVSIGLRDSKLLEPLKRLMILNNMLSLDIDI 68 Query: 76 --------------TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 + ++ + +Y+ +I + + + + Sbjct: 69 VATYVSPIHIDRSNMNMLEYTVICSILKYLSYSHILRQHQGTGVRIYIDEVKGYNDKIGE 128 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + F + D+ +++AAS++AK+ RD ++ + G GYP+ Sbjct: 129 CARGLYRGNVEIFIESRADAKYPAVSAASVVAKILRDSNIKALQVIAGETG----SGYPS 184 Query: 182 -AKHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 ++ + P R ++ +++L+ Sbjct: 185 DPVSRRWLANMYRDDGEPPVYIRKSWGIVKDLA 217 >gi|296241926|ref|YP_003649413.1| ribonuclease HII [Thermosphaera aggregans DSM 11486] gi|296094510|gb|ADG90461.1| ribonuclease HII [Thermosphaera aggregans DSM 11486] Length = 248 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 36/213 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKREELYEKITSS 78 + GIDE GRG L G +VVA ++++ I DSK ++ + R E + + +S Sbjct: 3 KYLIGIDEAGRGPLVGDMVVAGVMVEEKVFEELLSRISIRDSKTMTPRGRFESFLALENS 62 Query: 79 AI-ISISSASHQYIDKHNIHK------------------ATLDAIYHAVENLQVIPRSAL 119 +I + + S + ID+ N++ + + + + + + Sbjct: 63 SISVYLDYLSPKEIDRENLNMLTAGSIVRIIQFFNTLLSSYDERLVEVYIDEVKGVKKVV 122 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 S C+ + DS ++ ASIIAKV+RD + + D+G GY Sbjct: 123 EKECSKLFGKRCKLVFESQADSKYPIVSLASIIAKVSRDLSISSNTSVHGDFG----SGY 178 Query: 180 PT-AKHQQVIK------EKGPSCIHRLTFRPLR 205 P+ + ++ E P I R ++ L+ Sbjct: 179 PSDPRAVLWLERVYNSLEH-PPPIVRKSWSILK 210 >gi|225464178|ref|XP_002269817.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] gi|296086584|emb|CBI32219.3| unnamed protein product [Vitis vinifera] Length = 297 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 70/210 (33%), Gaps = 33/210 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI--TSSAII 81 GIDE GRG + GP+V + + DSK + +KREEL+E + S Sbjct: 18 GIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESIGW 77 Query: 82 SISSASHQ------------YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-- 127 ++ +++ + A + + G + Sbjct: 78 AVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVLLTEVYVDTVGDAEKYRI 137 Query: 128 -----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGY- 179 + K DS+ ++ ASI+AKVTRDR +R + GY Sbjct: 138 KLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLVETAENMHRNFGSGYP 197 Query: 180 PTAKHQQVIKEK-----GPSCIHRLTFRPL 204 + ++ G + R ++ Sbjct: 198 GDPVTKSWLQHHKHSVFGFPTLVRFSWGTC 227 >gi|303243761|ref|ZP_07330102.1| ribonuclease HII [Methanothermococcus okinawensis IH1] gi|302486003|gb|EFL48926.1| ribonuclease HII [Methanothermococcus okinawensis IH1] Length = 305 Score = 75.0 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 79/244 (32%), Gaps = 64/244 (26%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 G+DE GRG + GP+V+A + P G+ DSKK+S KREELY+ I ++ + Sbjct: 42 GLDEAGRGPVLGPMVIALVKATEKDLPKFDELGLKDSKKLSRHKREELYKIIMNNYEVKS 101 Query: 84 SSASHQYIDKHNI-------------------------------HKATLDAIYHAVENLQ 112 + IDK HK + V + Sbjct: 102 IILEAKDIDKMMEKTNLNKIEIMVFSKLINSVLKEEYKDYKNKNHKLNNKLNNNEVNDKI 161 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP--- 169 + + D+ A + + + + + + A KY Sbjct: 162 NSNKVNNNKINNKKIDIYIDACSSNEKAFSNQIKSKLVVYNDNIKIIAEHKADDKYKIVS 221 Query: 170 -------------------DYGFDSHVGYPTAKH-----QQVIKEKG-PSCIHRLTFRPL 204 YG + GYP+ K + +KE G I R +++ Sbjct: 222 AASIVAKVIRDKIIDNYKEIYG-EIGSGYPSDKTTINYLKNYVKEHGTLPEIARKSWKTS 280 Query: 205 RNLS 208 +N+ Sbjct: 281 KNIL 284 >gi|315425616|dbj|BAJ47275.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum] Length = 189 Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 25/179 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 G+DE GRG + GP+VVAA+ + + +P G+ DSK +S ++REE++EK+ +S + Sbjct: 3 CGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRVG 62 Query: 83 ISSASHQYIDKHNIHK----------------ATLDAIYHAVENLQVIPRSALIDGRSIP 126 S + I A + Sbjct: 63 YMLVSPRRISSCLRVNGGDGLNDLEYGVMAELARSFRPRILFVDSPDRDVRRARRRLLEK 122 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKH 184 + +++GD + +AAAS++AKV RDR + + ++ D+G GYP+ +H Sbjct: 123 LGVEMDVRCMVRGDRRHVLVAAASVVAKVVRDRKVAMLRRRLGDFG----SGYPSDPRH 177 >gi|91091718|ref|XP_966789.1| PREDICTED: similar to ribonuclease hi large subunit [Tribolium castaneum] gi|270001067|gb|EEZ97514.1| hypothetical protein TcasGA2_TC011359 [Tribolium castaneum] Length = 306 Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 78/223 (34%), Gaps = 47/223 (21%) Query: 21 KNMWPVAGIDEVGRGALAGPVVV--AAIILDPNNIP--FGINDSKKISHKKREELYEKIT 76 K+ + GIDE GRG + GP+V A L+ +P G DSK ++ + R+ ++ KI Sbjct: 34 KDFPCILGIDEAGRGPVLGPMVYGTAFCPLNEATLPDSLGCADSKALNEESRDVIFSKIC 93 Query: 77 SS--AIISISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALIDG 122 ++ + + I + A + + G Sbjct: 94 ANRKMGWGVEVIAPNSICNSMLSRQKYSLNQVSMDAAINLIKMALKGGVNLSHVYVDTVG 153 Query: 123 RSIPEDLPCQ-------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF-- 173 + K DS ++AASI AKVTRD ++ +GF Sbjct: 154 PPEKYQAYLKSLFPNVGVTVAKKADSTFPIVSAASICAKVTRDYALK-------GWGFGE 206 Query: 174 -------DSHVGYP----TAKHQQVIKE--KGPSCIHRLTFRP 203 + GYP T K Q ++ G + R ++ Sbjct: 207 GLQAGHEEFGSGYPGDPNTKKFLQNYRDPVFGYPHLVRFSWST 249 >gi|328462264|gb|EGF34369.1| ribonuclease HII [Lactobacillus rhamnosus MTCC 5462] Length = 93 Score = 74.7 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA 79 VAG+DEVGRG LAGPVV AA+IL + + +NDSK+++ +R+ LY I + A Sbjct: 4 YSHVAGLDEVGRGPLAGPVVTAAVILP-HQFKWPVNDSKQLTAHERDVLYPHILTEA 59 >gi|167043102|gb|ABZ07812.1| putative uncharacterized protein family UPF0102 [uncultured marine microorganism HF4000_ANIW141I9] Length = 172 Score = 74.7 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 26/46 (56%) Query: 161 MRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 M +P+YGF H GY T+ H + + + S IHR +F+P++ Sbjct: 1 MEQYDVIFPEYGFAKHKGYGTSFHMEQLNKNKASLIHRKSFKPVKK 46 >gi|330508333|ref|YP_004384761.1| ribonuclease HII [Methanosaeta concilii GP-6] gi|328929141|gb|AEB68943.1| ribonuclease HII [Methanosaeta concilii GP-6] Length = 210 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 29/208 (13%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 + G DE G+G + G + VA +++D G+ DSK +S KRE L KIT+ A Sbjct: 2 LLMGADEAGKGPVIGSMFVAGLVIDEERFFDLAVLGVKDSKMLSPAKREALARKITTIAT 61 Query: 81 ISIS--------------SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 + + + A+ + + Sbjct: 62 DQYILEVRAEVIDELRLVMTMNDIMVRSFSQVVGRLHADRAILDAADVNAERFAQAVRNH 121 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK-YPDYGFDSHVGYP----T 181 A K D ++AASI+AKV RDR MR + + G GYP T Sbjct: 122 SKTSMDLIAEHKADQRHHVVSAASILAKVRRDRSMRELENEMHCKIG----SGYPHDRDT 177 Query: 182 AKHQ-QVIKEKG-PSCIHRLTFRPLRNL 207 + ++E R ++ + + Sbjct: 178 IAFLSEWVRENKDLPPCARHSWTTAQRI 205 >gi|302765497|ref|XP_002966169.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii] gi|300165589|gb|EFJ32196.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii] Length = 361 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 69/194 (35%), Gaps = 20/194 (10%) Query: 28 GIDEVGRGALAGPVV----VAAIILDPNNIPFGINDSKKISHKK--REELYEKIT--SSA 79 GIDE GRG + GP+V A+ D + +K RE I + Sbjct: 2 GIDEAGRGPVLGPMVYGCAYCAVAYKEELASLKFADIDRGKTRKAFRELEGGPIDGVKRS 61 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 + IS S + K + + L + + + + R + K Sbjct: 62 LNDISYDSAIGLIKLVLSRGVLLSEVYV----DTVGDAEKYQARLSELFPHIKFTVAKKA 117 Query: 140 DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGY-PTAKHQQVIKEK----- 191 DS+ ++AASI AKVTRD+ ++ + GY + +++ Sbjct: 118 DSLFPIVSAASIAAKVTRDQALKSWVMDEAGCTISRNFGSGYPGDPDTKAWLEQHMDDVF 177 Query: 192 GPSCIHRLTFRPLR 205 G + R ++ + Sbjct: 178 GFPSLVRFSWATCK 191 >gi|145479147|ref|XP_001425596.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124392667|emb|CAK58198.1| unnamed protein product [Paramecium tetraurelia] Length = 297 Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 79/235 (33%), Gaps = 45/235 (19%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK---------- 62 E ++N GIDE GRG + GP++ A+ I+++ K Sbjct: 22 SFEE--LKQNFDWQLGIDEAGRGPVLGPMLYASCYWPTKYHKL-ISETCKFVDSKQINEA 78 Query: 63 ----------------ISHKKREELYEKITSSAIIS-------ISSASHQYIDKHNIHKA 99 ++ + RE E ++ + + IS + + + I K Sbjct: 79 ARDKLFDVLTQLKGKVLTFETRELTAEYLSKNQLAHLTINLNDISHNTAAELIQSAIQKG 138 Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD- 158 + G+ K DS +++AASI AKVTRD Sbjct: 139 YKITEIFVDTVGPKQTYKNFLQGKLQEIGKEANIVVEEKADSKYANVSAASICAKVTRDY 198 Query: 159 RLMRIAHKKYPDYGFDSHVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 R+ I + P+ GY K ++ ++ R +++ ++ + Sbjct: 199 RITLIQQEILPN--DSIGSGYPGDPKTKKYLENTNIPFFVYPKYVRFSWQTIKTI 251 >gi|167524000|ref|XP_001746336.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775098|gb|EDQ88723.1| predicted protein [Monosiga brevicollis MX1] Length = 596 Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 76/255 (29%), Gaps = 74/255 (29%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREE----------- 70 V G+DE GRG + GP+V A G DSK++S KR+E Sbjct: 301 VLGVDEAGRGPVLGPMVYAVAFAPLSENARMKKLGFADSKQLSEAKRDELFKVIKENADW 360 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENL------------------- 111 + K+ A IS+ + +A + Sbjct: 361 MGWKVHMLAASDISAGMLSRTKHNLNAQAHESTVDLVKRLHAQGVQIKEDLTYRLRLNHR 420 Query: 112 --------QVIPRSALIDGRSIPEDLPCQAFAVI-------------------KGDSISL 144 + ++ P + D Sbjct: 421 QLYVDTVGKAHIYQQQLENWLRPTIPNIKIVVESKLCVTHRVSDLCVLILDIANADVTYP 480 Query: 145 SIAAASIIAKVTRDRLMRIA-HKKYPDYGFDSHVGYP----TAKHQQVIKE-----KGPS 194 ++AASI AKVTRD ++ H + + D GYP T +++ G Sbjct: 481 IVSAASICAKVTRDAVLTYWRHPEQREIDNDFGCGYPGDSSTKA---WLRKVLDPIFGFP 537 Query: 195 CIHRLTFRPLRNLSV 209 + R ++ R+L + Sbjct: 538 SLVRFSWSTARDLLL 552 >gi|301100786|ref|XP_002899482.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4] gi|262103790|gb|EEY61842.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4] Length = 791 Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 80/210 (38%), Gaps = 34/210 (16%) Query: 6 IPERPHFELEAMVRE-------KNMWPVAGIDEVGRGALAGPVVVAA----IILDPNNIP 54 +P+RP+ + ++ + + GIDE GRG + GP+V A + ++ Sbjct: 1 MPDRPNLQRTLLLASDCPASCLNGVPVMLGIDEAGRGPVMGPMVYGAAYWPVAVNDAMCA 60 Query: 55 FGINDSKKISHKKREELYEKITSSA--IISISSASHQYIDKHNIHKATLDAIYHA----- 107 G +DSK +S + R +L+EK+ S+ + S I + + Sbjct: 61 LGFDDSKALSAESRAQLFEKMQSTEGLGWIVRLISAAEISDKMQRQTSNLNEMSRDAAIQ 120 Query: 108 --------------VENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIA 153 V V + + + K DS+ ++AASI A Sbjct: 121 LINEVQNKGAVVKKVFVDTVGDPRWYQSFLTKHFNGTIEFRVEKKADSLFKVVSAASIAA 180 Query: 154 KVTRDRLMRIAHKKYPDYGF--DSHVGYPT 181 KVTRDR++ + P D GYP+ Sbjct: 181 KVTRDRVISDWMWESPALELPTDFGSGYPS 210 >gi|302800969|ref|XP_002982241.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii] gi|300149833|gb|EFJ16486.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii] Length = 261 Score = 73.5 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 71/199 (35%), Gaps = 25/199 (12%) Query: 28 GIDEVGRGALAGPVV----VAAII-------LDPNNIPFGINDSKKISHKKREELYEKIT 76 GIDE GRG + GP+V A+ L + F D K RE I Sbjct: 13 GIDEAGRGPVLGPMVYGCAYCAVAYKEELASLKFAGMRFQDIDRGKTRKAFRELEGGPID 72 Query: 77 --SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 ++ IS S + K + + L + + + + R + Sbjct: 73 GVKRSLNDISYDSAIGLIKLVLSRGVLLSEVYV----DTVGDAEKYQARLSELFPHIKFT 128 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VGY-PTAKHQQVIKEK 191 K DS+ ++AASI AKVTRD+ ++ + GY + + +++ Sbjct: 129 VAKKADSLFPIVSAASIAAKVTRDQALKSWVMDEAGCAISRNFGSGYPGDPETKAWLEQH 188 Query: 192 -----GPSCIHRLTFRPLR 205 G + R ++ + Sbjct: 189 MDDVFGFPSLVRFSWATCK 207 >gi|157876580|ref|XP_001686636.1| ribonuclease H [Leishmania major strain Friedlin] gi|23477654|gb|AAN34793.1| ribonuclease H(35) [Leishmania major] gi|56713264|gb|AAW23359.1| ribonuclease HIIB [Leishmania major] gi|68129711|emb|CAJ09017.1| putative ribonuclease H [Leishmania major strain Friedlin] Length = 301 Score = 73.5 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 77/221 (34%), Gaps = 45/221 (20%) Query: 25 PVAGIDEVGRGALAGPVVV-AAII-LDPNNIPFGIN---DSKKISHKKREELYEKITSSA 79 V GIDE GRG + GP+V A+I L ++ + DSK ++ ++R +++ Sbjct: 45 LVLGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKMLNERRRLASLQQLRQLK 104 Query: 80 II--SISSASHQYIDKHNIHKATLDAI--------------------YHAVENLQVIPRS 117 S + I K ++ ++ + + Sbjct: 105 TFRSFTVCVSPEEISKTMTGRSGRNSNTLSHETAIQIISEATLASAGKLCAAYVDTVGPP 164 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 R + K DSI ++AASI+AK RD + + + Sbjct: 165 ETYQARLAGRFPHLRVTVAKKADSIFPIVSAASIVAKTVRDTAIEALGE-------NIGS 217 Query: 178 GYPT-AKHQQVIKEKGPSCI----H-----RLTFRPLRNLS 208 GYP+ + + ++ H R ++ PL L+ Sbjct: 218 GYPSDPRTMEWLRSH-VHRFFSFPHAYDFARHSWGPLVQLA 257 >gi|158297564|ref|XP_317779.3| AGAP007741-PA [Anopheles gambiae str. PEST] gi|157015256|gb|EAA12465.3| AGAP007741-PA [Anopheles gambiae str. PEST] Length = 342 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 44/216 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI--- 80 G+DE GRG + GP+V + G DSK+++ +KR+++++++ Sbjct: 69 GVDEAGRGPVLGPMVYGIAFCPLSKKDILKQLGFADSKQLTEEKRDQIFDEMNRKDFAKT 128 Query: 81 ---ISISSASHQYIDKHNIHK-------------------ATLDAIYHAVENLQVIPRSA 118 ++ + S I + + A + A + + Sbjct: 129 ALGWAVEAISPNVISMCMLRRTKHSLNEVSMDSAIGLINSAIDAGVNIAEVYVDTVGPPE 188 Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA------HKKYPDYG 172 + + K DS ++AASI AKVTRD +++ +++ +G Sbjct: 189 KYQAKLKAIFPKFKITVAKKADSTYPIVSAASIAAKVTRDHALKVWKFRERPNEEVTSFG 248 Query: 173 FDSHVGYP----TAKHQQVIKE-KGPSCIHRLTFRP 203 GYP T K I G + R ++ Sbjct: 249 ----SGYPGDPTTKKFLGEIDLVFGFPRLVRFSWST 280 >gi|183232283|ref|XP_655093.2| RNase HI large subunit [Entamoeba histolytica HM-1:IMSS] gi|169802113|gb|EAL49706.2| RNase HI large subunit, putative [Entamoeba histolytica HM-1:IMSS] Length = 270 Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 38/217 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAII--- 81 GIDE GRG + GP+V +A + G +DSK +S RE+L+ I S + Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFTTNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCGFS 76 Query: 82 ----------------------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 I+ ++ + I I + ++ + + + Sbjct: 77 TRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKYQA 136 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS---H 176 + E Q K D + ++AASI AKVTRD + Y + + Sbjct: 137 MIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLDNW--IYEETNIQTRQVG 194 Query: 177 VGYPTA-KHQQVIK-----EKGPSCIHRLTFRPLRNL 207 GYP+ + +K G + R + + + Sbjct: 195 CGYPSDVDTIKWMKCQYDPLFGYPNLVRFGWETSKRI 231 >gi|145640736|ref|ZP_01796319.1| ribonuclease HII [Haemophilus influenzae R3021] gi|145274662|gb|EDK14525.1| ribonuclease HII [Haemophilus influenzae 22.4-21] Length = 56 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 29/43 (67%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK 61 + +AG+DEVGRG L G VV AA+ILDPNN G+ DSK Sbjct: 4 YPQGYELIAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLADSK 46 >gi|145605665|ref|XP_370462.2| hypothetical protein MGG_06959 [Magnaporthe oryzae 70-15] gi|145013464|gb|EDJ98105.1| hypothetical protein MGG_06959 [Magnaporthe oryzae 70-15] Length = 312 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 79/227 (34%), Gaps = 35/227 (15%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 P +++ + V G+DE GRG + GP+V L + ++ Sbjct: 39 THFSPVPD----SLLSPSPVPCVLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHF 94 Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 K + S+++ +++ + A + + A + Sbjct: 95 DDSK---VLTPAVRSSLMESLCTPTLSQSAGSLNSVMDRGVNVAEIYVDTVGPPAAYQKK 151 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK------------KYPDY 171 + K DS+ ++AAS+ AKVTRD + + +K + + Sbjct: 152 LERFFPTAKVTVSKKADSLYPCVSAASVCAKVTRDAALEVLYKNVLSEIAKAEGGEDEEI 211 Query: 172 GFDSHVGYPT-AKHQQVIKEKGPSCIH---------RLTFRPLRNLS 208 G+ GYP+ A+ +K +H R ++ ++++ Sbjct: 212 GW--GSGYPSDARCVGWLKRN----MHPVFGWGTECRFSWGTVKDML 252 >gi|328865315|gb|EGG13701.1| hypothetical protein DFA_11462 [Dictyostelium fasciculatum] Length = 665 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 83/255 (32%), Gaps = 60/255 (23%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKIS 64 RP N+ AGIDE G+G++ GP+VVA +++D G+ DSK ++ Sbjct: 237 RPRLTPANKFNNYNINIYAGIDESGKGSVLGPLVVAIVVIDQPTSQLLRATGVKDSKALT 296 Query: 65 HKKREELYEKITSSAIIS-------------------------ISSASHQYIDKHNIHKA 99 +RE LY IT AI I + ++ A Sbjct: 297 SAQRENLYSIITEKAIYYKTKIFSASDIDQRRKVQTLNQIEMGIFMELIDGLKQYYYENA 356 Query: 100 TLDAIYHAVENLQVIPRSALIDGRSIPEDLPC----------------------QAFAVI 137 + + + + + A + I Sbjct: 357 SSEHLAQVMMSDDTDGDHADDSKPHHRITVEIDSIESNSQKFSYPLRQRYAGFANIVCEI 416 Query: 138 KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK-HQQVIKEKGP--- 193 K D S AAASI+AKVTRD+ + G GYP+ + I Sbjct: 417 KADMTYTSTAAASIVAKVTRDKYIENLQS---QVGEPIGCGYPSDETTLSFIDRFYRANA 473 Query: 194 --SCIHRLTFRPLRN 206 R +++ + + Sbjct: 474 FDHPEVRQSWKTISS 488 >gi|320582951|gb|EFW97168.1| ribonuclease HI large subunit [Pichia angusta DL-1] Length = 303 Score = 72.7 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 81/231 (35%), Gaps = 45/231 (19%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREE 70 ++ N + G+DE GRG + GP+V + +G DSK ++ ++R++ Sbjct: 32 KVLESPNEPVILGVDEAGRGPVLGPMVYGIAYCLKDYSSDLKSVYGFADSKTLTVERRDQ 91 Query: 71 LYEKI-------TSSAIISISSASHQYIDKHN-----------IHKAT-----------L 101 L + I + + ++ + + I +A Sbjct: 92 LMKSIIEPDGDLCQNVGWATTTMTARDISSEMLKPRLIGNINLNEQAHDATIKLIQGVLD 151 Query: 102 DAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 + + + + + K DS+ ++ ASI+AKVTRD + Sbjct: 152 QKVNLKEVYVDTVGPPDSYQRKLSSRFPGIKVTVTKKADSLFPIVSTASIVAKVTRDCSL 211 Query: 162 RIAHKKYPDYGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRN 206 G D GYP+ + Q + G + + R +++ R+ Sbjct: 212 YYLAD-----GADWGSGYPSDPRTSQWLNSNVHPVFGWNSMVRFSWQTSRD 257 >gi|218281130|ref|ZP_03487665.1| hypothetical protein EUBIFOR_00226 [Eubacterium biforme DSM 3989] gi|218217644|gb|EEC91182.1| hypothetical protein EUBIFOR_00226 [Eubacterium biforme DSM 3989] Length = 282 Score = 72.3 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 71/213 (33%), Gaps = 37/213 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 AG DEVG G GPVVVA+ I+ GI DSK++ K +L I S Sbjct: 75 AGSDEVGTGDYFGPVVVASCIVTKEAREKLSHLGIQDSKQVDDTKIRKLAPLIKDVCPHS 134 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 I + K+N + + + + + G ++P+ + F K Sbjct: 135 ILIVPN---SKYNDMHDSCNMVDMKCRLHNQAYVNLIHKGYTLPKQIVIDQFVQEKIYYR 191 Query: 143 SLS------------------IAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 L A + + + R+ + Y F G + Sbjct: 192 YLQGFPEVIRGITFETKAENKYLAVACASILARNAFLEAWDLMEEKYDFKFEKGAGSKVD 251 Query: 185 ---QQVIKEKG------PSCIHRLTFRPLRNLS 208 ++ +K+ G + +H F+ + + Sbjct: 252 ACGKEFVKKFGKEKLYQVAKLH---FKNTQKIG 281 >gi|302348278|ref|YP_003815916.1| Ribonuclease HII [Acidilobus saccharovorans 345-15] gi|302328690|gb|ADL18885.1| Ribonuclease HII [Acidilobus saccharovorans 345-15] Length = 223 Score = 71.6 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 78/206 (37%), Gaps = 27/206 (13%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS 78 M + G+DE GRG+L G +++A N G+ DSK+++ RE LY I Sbjct: 1 MSWIIGVDEAGRGSLVGELMLACFATKEENLGLLKDMGVRDSKQLTPHSRETLYRSIVRL 60 Query: 79 AIISISSASHQYIDKHNIHK--------------ATLDAIYHAVENLQVIPRSALIDGRS 124 + ID+ N++ + L + ++ G Sbjct: 61 GEFVVVPIPPAEIDRENVNVLEERAALKGLKVLLSRLRPELVKAIYIDKFGELRILPGEL 120 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AK 183 + K D+ + ++AASIIAKV RDR + + Y G GYP+ Sbjct: 121 KRLGFRGRLVVEPKADANYVVVSAASIIAKVIRDRRIEVLRSMYGVEG----SGYPSDPL 176 Query: 184 HQQVIKE---KGP-SCIHRLTFRPLR 205 + + G I R ++ LR Sbjct: 177 TVSWVMKVLSSGARPPIIRYSWGTLR 202 >gi|322505755|emb|CAM43828.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904] Length = 318 Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 49/223 (21%) Query: 25 PVAGIDEVGRGALAGPVVV-AAI-------------------ILDPNNIPFGINDSKKIS 64 + GIDE GRG + GP+V A+ ILD + + +++ Sbjct: 45 LILGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKILDERHRLASLQQLRQLK 104 Query: 65 HKKR-------EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 + EE+ +T + ++++ SH+ A + + Sbjct: 105 TFRSFTVCVSPEEISSTMTGRSGRNLNTLSHETAVHIISEATLASAGKLCAAYVDTVGPP 164 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 R + K DS ++AASI+AK TRD ++ + + Sbjct: 165 DTYQARLAGRFPHLRVTVAKKADSKFPIVSAASIVAKTTRDTAIQELGE-------NIGS 217 Query: 178 GYPT-AKHQQVIKEK-----------GPSCIHRLTFRPLRNLS 208 GYP+ + ++ G R ++ P+ L+ Sbjct: 218 GYPSDPRAIAWLRSHVHRFFVFRHVYG---YVRHSWGPVVQLA 257 >gi|154345524|ref|XP_001568699.1| ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904] Length = 318 Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 49/223 (21%) Query: 25 PVAGIDEVGRGALAGPVVV-AAI-------------------ILDPNNIPFGINDSKKIS 64 + GIDE GRG + GP+V A+ ILD + + +++ Sbjct: 45 LILGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKILDERHRLASLQQLRQLK 104 Query: 65 HKKR-------EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 + EE+ +T + ++++ SH+ A + + Sbjct: 105 TFRSFTVCVSPEEISSTMTGRSGRNLNTLSHETAVHIISEATLASAGKLCAAYVDTVGPP 164 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 R + K DS ++AASI+AK TRD ++ + + Sbjct: 165 DTYQARLAGRFPHLRVTVAKKADSKFPIVSAASIVAKTTRDTAIQELGE-------NIGS 217 Query: 178 GYPT-AKHQQVIKEK-----------GPSCIHRLTFRPLRNLS 208 GYP+ + ++ G R ++ P+ L+ Sbjct: 218 GYPSDPRAIAWLRSHVHRFFVFRHVYG---YVRHSWGPVVQLA 257 >gi|189219365|ref|YP_001940006.1| ribonuclease HIII [Methylacidiphilum infernorum V4] gi|189186223|gb|ACD83408.1| Ribonuclease HIII [Methylacidiphilum infernorum V4] Length = 323 Score = 71.2 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 79/225 (35%), Gaps = 35/225 (15%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKRE 69 E ++ + AGIDE G+G L GP+VVAA+ +D + F GI DSK+I R Sbjct: 99 YEEVLHPEYFEAHAGIDECGKGDLFGPLVVAAVFVDKQSARFLVDAGIKDSKRIKSDSRL 158 Query: 70 -ELYEKITSSAIISISSASHQYIDK--------------HNIHKATLDAIYHAVENLQVI 114 +L ++ A S S + KA + + +V+ Sbjct: 159 FQLAMEVKKKAPYGFFSLSPLQYNDLYEKKFKNLNLLLAWAHAKAYQRLLQVQSDCHRVV 218 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 ++ + + S A + + + R + K + GF Sbjct: 219 CDRFAHPWVLKQSFEKIGMQDALEQMTKAESDPAVAAASILARAVFLEELSKLGKEIGFS 278 Query: 175 SHVGYPTA-----------KHQQVIKEKGPSCIHRLTFRPLRNLS 208 G + K ++ +++ + +H F+ ++ + Sbjct: 279 LLRGASSKTVEQAREIYLNKGKEALRK--VAKMH---FKTIQKIL 318 >gi|189195170|ref|XP_001933923.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187979802|gb|EDU46428.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 342 Score = 71.2 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 74/236 (31%), Gaps = 54/236 (22%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKITS 77 V G+DE GRG + GP+V A L + +DSK ++ + R L K+ + Sbjct: 58 EVVLGVDEAGRGPVLGPMVYALFYLPIELHHSLLADTHHFDDSKVLTPEVRSNLMRKLCT 117 Query: 78 SAIISIS-SASHQYIDKHNIHKATLDA-------------------------IYHAVENL 111 + A + + + + Sbjct: 118 KGSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEIYI 177 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 I + + + + K DS+ ++AAS+ AKVTRD Y Y Sbjct: 178 DTIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDA---ALDVCYEPY 234 Query: 172 GFDSH-------------VGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 ++ GYP+ A+ +K+ G R ++ + L Sbjct: 235 HNRNNEAERGTDVKVAWGSGYPSDARTTTWLKQNMDPLFGWGSETRFSWGTAKELL 290 >gi|190344386|gb|EDK36053.2| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC 6260] Length = 343 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 75/231 (32%), Gaps = 42/231 (18%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKR---- 68 + K V G+DE GRG + GP+V + +G DSK + KR Sbjct: 65 LENKTASVVLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELF 124 Query: 69 ---EELYEKITSSAIISISSASHQYIDKHN------------IHKATLDAIY-------- 105 E + ++ + + + + + I +A I Sbjct: 125 YMVESMDHELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDS 184 Query: 106 ---HAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 + + A + + K DSI ++ AS++AKVTRD + Sbjct: 185 GVNVKKVFVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIH 244 Query: 163 IAHKKYPDY-GFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRN 206 H + G GYP+ + G + R +++ ++ Sbjct: 245 YYHDQLALLQGKVIGSGYPSDPNTSTWLHANVDPVFGWCPLVRFSWQTAKD 295 >gi|330831767|ref|XP_003291928.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum] gi|325077872|gb|EGC31557.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum] Length = 206 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 80/207 (38%), Gaps = 35/207 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAIIS 82 IDE G+G+L GP+VV+ +++D G+ DSK++S KRE LY I+ +I Sbjct: 3 ISIDEAGKGSLLGPLVVSCVVMDSKTEQLFKEQGVKDSKQLSPLKRESLYNLISEKSIYH 62 Query: 83 -ISSASHQYIDKHNIHK---------------------ATLDAIYHAVENLQVIPRSALI 120 S+ IDK A + +++++ + Sbjct: 63 QTIILSNHDIDKRRSLHTLNEIETNIFYQLIKDSILNLAKNQPVKVILDSIESNSEKYSL 122 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 +S C+ K D S+ AASI+AKV RD+ ++ + GYP Sbjct: 123 PFKSYFGSPTCEIICETKADIKYTSVGAASILAKVKRDQFIKSLEIELDQ---TIGSGYP 179 Query: 181 TAK-HQQVI-----KEKGPSCIHRLTF 201 + + + K R ++ Sbjct: 180 SDSITTEFVNSYLKKNFEYPDSMRRSW 206 >gi|296422347|ref|XP_002840722.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636945|emb|CAZ84913.1| unnamed protein product [Tuber melanosporum] Length = 336 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 45/226 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREE-------LY 72 + G+DE GRG + GP+V A +P +DSKK++H R Sbjct: 62 EVILGVDEAGRGPVLGPMVYAVAYCLKSDNPMLREHKFDDSKKLTHSLRTHLLQTLTTPD 121 Query: 73 EKITSSAIISISSASHQYI----------DKHNIHKATLDAIYHAV-------------E 109 + + S S S + I A + Sbjct: 122 TTLHRNLGWSTISLSPRDISSGMLRSTTSSSTYNLNAQAFDATTTLITAVLSSGVNIREI 181 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + ++ R K DSI ++AAS+ AKVTRD + + + Sbjct: 182 YVDTVGTASTYQSRLQKLFPHIAVTVSKKADSIYPIVSAASVCAKVTRDAAIGVLVPE-- 239 Query: 170 DYGFDSHVGY-PTAKHQQVIKEKGPSCI------HRLTFRPLRNLS 208 G + GY K ++ ++ + R ++ R++ Sbjct: 240 --GEEIGSGYPGDEKTKEWLRREMEPVFGWEVGMARFSWATARDML 283 >gi|254565155|ref|XP_002489688.1| Ribonuclease H2 catalytic subunit, removes RNA primers during Okazaki fragment synthesis [Pichia pastoris GS115] gi|238029484|emb|CAY67407.1| Ribonuclease H2 catalytic subunit, removes RNA primers during Okazaki fragment synthesis [Pichia pastoris GS115] gi|328350107|emb|CCA36507.1| ribonuclease H2 subunit A [Pichia pastoris CBS 7435] Length = 314 Score = 70.8 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 93/252 (36%), Gaps = 49/252 (19%) Query: 2 FCNSIPERPHFEL--------EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI 53 S+PE + E++++ G+DE GRG + GP+V Sbjct: 19 IPPSVPEISTYRTTTYVSEIPESVLKNPEKPCCLGVDEAGRGPVVGPMVYGVSYCLEEYE 78 Query: 54 P----FGINDSKKISHKKREELYEKITS-----------------SAIISISSASHQYID 92 P FG DSK ++ +KR EL E + + + IS + I Sbjct: 79 PRLKDFGFADSKTLTEQKRSELLESLCNGDHELRKNVGWATTSISACDISSAMLKPHNIG 138 Query: 93 KHNIHKATLDAIYHAVE------------NLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 +N+++ D ++ + + A + K D Sbjct: 139 NYNLNEQAHDVTMELIDKVIQKGVNLRHVYVDTVGPPASYQKKLQQRFPALLITVSKKAD 198 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE-----KGPS 194 +I +++AS+ AKVTRD +R ++ + D GYP+ ++ + + G S Sbjct: 199 AIYPCVSSASVCAKVTRDVCLRTSNGEENL--LDCGSGYPSDPNTKKWLAQSIHPLFGWS 256 Query: 195 CIHRLTFRPLRN 206 R +++ ++ Sbjct: 257 RDVRFSWQTAKD 268 >gi|213404976|ref|XP_002173260.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275] gi|212001307|gb|EEB06967.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275] Length = 321 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 40/221 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITS----- 77 V G+DE GRG + GP+V A +G DSK+++ +KR +L + + Sbjct: 60 FVLGVDEAGRGPVLGPMVYAVAFCPTELKLSEYGFADSKQLTAEKRTQLLQAVCDRNNPA 119 Query: 78 --SAIISISSASHQYIDKHNIHKATLDAIYHAVE--------------------NLQVIP 115 S + + + + I + + + + + + Sbjct: 120 STSIGWATTVMTARDISRGMLRRVDKYNLNAQAHDSTIALIQSVLKAGYNISEIYVDTVG 179 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 A+ + + K DS+ ++ ASI AKVTRD + + + Sbjct: 180 PPAVYQAKLQNRFPQAKVTVTKKADSLFPIVSLASICAKVTRDAHLERTREALDIDNW-- 237 Query: 176 HVGYPTA-KHQQVIKEKGPSC-------IHRLTFRPLRNLS 208 GY + + +++ + R +++ +NL Sbjct: 238 GCGYSSDSQTTAWLRKN-VHPVFGWKGHVVRYSWQTAKNLL 277 >gi|256078514|ref|XP_002575540.1| ribonuclease hi large subunit [Schistosoma mansoni] gi|238660781|emb|CAZ31773.1| ribonuclease hi large subunit, putative [Schistosoma mansoni] Length = 290 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 37/207 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS- 82 GIDE GRG + GP+V A + + + G+ DSK ++ +RE+L +++ + Sbjct: 3 GIDEAGRGPVLGPMVYACALSPISQLNELETIGLADSKTLNENQREKLLKEMLNKCDWIS 62 Query: 83 --ISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIPRSALID 121 + S YI + + K+ + + + + ++ + Sbjct: 63 AVVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAEHYE 122 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY----PDYGFDSHV 177 + + K D ++AASI AKVTRDR++++ K+ P+ G Sbjct: 123 TKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRVLQMWPKEERGSVPE-GTGLGS 181 Query: 178 GYP----TAKHQQVIKE--KGPSCIHR 198 GYP T + + + G + R Sbjct: 182 GYPGDPVTKSYLRACMDPVFGFPSLVR 208 >gi|154333788|ref|XP_001563149.1| ribonuclease hii [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060161|emb|CAM45568.1| putative ribonuclease HII [Leishmania braziliensis MHOM/BR/75/M2904] Length = 255 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 1/74 (1%) Query: 133 AFAVIKGDSISLSIAAASIIAKVTRDRLMRI-AHKKYPDYGFDSHVGYPTAKHQQVIKEK 191 AVIKGD+ LSIAAAS++AKV RD + H+ +P YGFD H GY TA H+ + Sbjct: 173 CTAVIKGDATVLSIAAASVVAKVARDAYVMTVMHRAFPHYGFDYHKGYCTAAHKMELARW 232 Query: 192 GPSCIHRLTFRPLR 205 GPS HR+ + P++ Sbjct: 233 GPSRFHRVDYAPVK 246 >gi|323449222|gb|EGB05112.1| hypothetical protein AURANDRAFT_12637 [Aureococcus anophagefferens] Length = 229 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 68/221 (30%), Gaps = 35/221 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIIL---DPNNIP---FGINDSKKISHKKR----- 68 + GIDE GRG + G + D + I I+DSK+++ +KR Sbjct: 4 RRGEAVKLGIDEAGRGPVLGAMTFGTCYWSIADDDAIEASQKEIDDSKQLTDEKRSKLFD 63 Query: 69 -----EELYEKITSSAIISISSAS----HQYIDKHNIHKATLDAIYH--------AVENL 111 E + + + IS+ ++ + Sbjct: 64 RIAADERMGWAVEVVSAARISAEMLQVKPTSLNAISFDATCRLIQRVLDRGADVVEAFVD 123 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 V + + + D + K D++ AASI AKV RD + P Sbjct: 124 TVGNPDSYSERLTRAFDGKIKFTVAKKADALYKCTGAASICAKVCRDLSIARWTYDEPGV 183 Query: 172 G-FDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLR 205 D GYP+ + G R ++ P + Sbjct: 184 DDLDFGSGYPSDPACVAWLARNVHGVFGYPNFCRFSWAPAK 224 >gi|325969836|ref|YP_004246028.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28] gi|323709039|gb|ADY02526.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28] Length = 198 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 30/194 (15%) Query: 41 VVVAAIILDPNN--IPFGINDSKKISHKKREELYEKITSSAII-SISSASHQYIDKHNIH 97 +V+A ++ + N G+ DSK++S + R L+ + S ID++ Sbjct: 1 MVIAIVVTNDMNKLREIGVKDSKELSPESRSRLFIILKSILNYIDYEIIEPVIIDRYVNM 60 Query: 98 KATLDAI-------------YHAVENLQVIPRSALIDGRSIPEDL----PCQAFAVIKGD 140 A V + + + A+ K D Sbjct: 61 NALNILEVEVTIKLINKALSNIQVHTIYIDSPDPKPERFRDMIMERVGGNVNVIAMNKAD 120 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQ----VIKEKG-PS 194 + ++AASI+AKV RD ++ H+++ D+G GYP+ + I++ G Sbjct: 121 KLIPVVSAASIVAKVVRDSIIERLHREFGDFG----SGYPSDPRTIAFLKRWIEKHGDLP 176 Query: 195 CIHRLTFRPLRNLS 208 I R ++ + + Sbjct: 177 PIVRRSWSTAKKML 190 >gi|254576869|ref|XP_002494421.1| ZYRO0A01100p [Zygosaccharomyces rouxii] gi|238937310|emb|CAR25488.1| ZYRO0A01100p [Zygosaccharomyces rouxii] Length = 309 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 78/226 (34%), Gaps = 47/226 (20%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKIT- 76 + G+DE GRG + GP+V +G +DSKK+S +R L+ KI Sbjct: 41 QIILGVDEAGRGPVLGPMVYGISYCTKQFQDEILKPNYGFDDSKKLSDLERRRLFSKIYG 100 Query: 77 --------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP------------- 115 ++ ++++ + I + + V Sbjct: 101 ENGEVAEIANVGYAVTAITPADISSGMLRYPANANYNLNEQAHDVTIALIEGVLQRGVKL 160 Query: 116 ---------RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A + + + K DS+ ++ ASI+AKVTRD L+ + Sbjct: 161 HHVYVDTVGPPASYQKKLEQKFPHIKFTVAKKADSLYCVVSVASIVAKVTRDILLEQWAQ 220 Query: 167 KY--PDYGFDSHVGYPT-AKHQQVIKE-----KGPSCI-HRLTFRP 203 + P+ G GYP AK ++ G R +++ Sbjct: 221 QVSPPEAG-PLGSGYPADAKTTAWLRNTMKPLMGWDPHLVRFSWQT 265 >gi|323346904|gb|EGA81183.1| Rnh201p [Saccharomyces cerevisiae Lalvin QA23] Length = 307 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 84/235 (35%), Gaps = 45/235 (19%) Query: 16 AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKR 68 + + E+N P+ GIDE GRG + GP+V A + +DSKK++ R Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83 Query: 69 EELYEKITS---------SAIISI--------SSASHQYIDKHNIHKATLDAI------- 104 L+ KI A I S + + +A + Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143 Query: 105 ----YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + + + A + + K DS+ ++ AS++AKVTRD L Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDIL 203 Query: 161 MRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKG------PSCIHRLTFRPLRNLS 208 + K+ P GYP+ K +K P+ + R +++ + L Sbjct: 204 VESL-KRDP--DEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLL 255 >gi|151944462|gb|EDN62740.1| Rnh2A [Saccharomyces cerevisiae YJM789] gi|259149289|emb|CAY82531.1| Rnh201p [Saccharomyces cerevisiae EC1118] Length = 307 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 84/235 (35%), Gaps = 45/235 (19%) Query: 16 AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKR 68 + + E+N P+ GIDE GRG + GP+V A + +DSKK++ R Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83 Query: 69 EELYEKITS---------SAIISI--------SSASHQYIDKHNIHKATLDAI------- 104 L+ KI A I S + + +A + Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143 Query: 105 ----YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + + + A + + K DS+ ++ AS++AKVTRD L Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDIL 203 Query: 161 MRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKG------PSCIHRLTFRPLRNLS 208 + K+ P GYP+ K +K P+ + R +++ + L Sbjct: 204 VESL-KRDP--DEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLL 255 >gi|6324257|ref|NP_014327.1| Rnh201p [Saccharomyces cerevisiae S288c] gi|1730743|sp|P53942|RNH2A_YEAST RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=RNase H(201); AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|791114|emb|CAA60188.1| unknown [Saccharomyces cerevisiae] gi|1301957|emb|CAA95946.1| unnamed protein product [Saccharomyces cerevisiae] gi|190409061|gb|EDV12326.1| ribonuclease HI 35 large subunit [Saccharomyces cerevisiae RM11-1a] gi|207341690|gb|EDZ69676.1| YNL072Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|285814579|tpg|DAA10473.1| TPA: Rnh201p [Saccharomyces cerevisiae S288c] gi|323331967|gb|EGA73379.1| Rnh201p [Saccharomyces cerevisiae AWRI796] gi|323352575|gb|EGA85074.1| Rnh201p [Saccharomyces cerevisiae VL3] Length = 307 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 84/235 (35%), Gaps = 45/235 (19%) Query: 16 AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKR 68 + + E+N P+ GIDE GRG + GP+V A + +DSKK++ R Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83 Query: 69 EELYEKITS---------SAIISI--------SSASHQYIDKHNIHKATLDAI------- 104 L+ KI A I S + + +A + Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143 Query: 105 ----YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + + + A + + K DS+ ++ AS++AKVTRD L Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDIL 203 Query: 161 MRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKG------PSCIHRLTFRPLRNLS 208 + K+ P GYP+ K +K P+ + R +++ + L Sbjct: 204 VESL-KRDP--DEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLL 255 >gi|323335818|gb|EGA77097.1| Rnh201p [Saccharomyces cerevisiae Vin13] Length = 307 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 84/235 (35%), Gaps = 45/235 (19%) Query: 16 AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKR 68 + + E+N P+ GIDE GRG + GP+V A + +DSKK++ R Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83 Query: 69 EELYEKITS---------SAIISI--------SSASHQYIDKHNIHKATLDAI------- 104 L+ KI A I S + + +A + Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143 Query: 105 ----YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + + + A + + K DS+ ++ AS++AKVTRD L Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDIL 203 Query: 161 MRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKG------PSCIHRLTFRPLRNLS 208 + K+ P GYP+ K +K P+ + R +++ + L Sbjct: 204 VESL-KRDP--DEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLL 255 >gi|330925767|ref|XP_003301184.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1] gi|311324289|gb|EFQ90711.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1] Length = 332 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 73/236 (30%), Gaps = 55/236 (23%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKITS 77 V G+DE GRG + GP+V A L + +DSK ++ + R L K+ + Sbjct: 49 EVVLGVDEAGRGPVLGPMVYALFYLPTELHHSLLADTHHFDDSKVLTPEVRSNLMRKLCT 108 Query: 78 SAIISIS-SASHQYIDKHNIHKATLDA-------------------------IYHAVENL 111 + A + + + + Sbjct: 109 KGSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEIYI 168 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 I + + + + K DS+ ++AAS+ AKVTRD Y Y Sbjct: 169 DTIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDA---ALDVCYEPY 225 Query: 172 GFDSH-------------VGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 + GYP+ A+ +K+ G R ++ + L Sbjct: 226 H-HRNEAERGADVKVVWGSGYPSDARTTTWLKQNMDPLFGWGSETRFSWGTAKELL 280 >gi|255731726|ref|XP_002550787.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404] gi|240131796|gb|EER31355.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404] Length = 356 Score = 68.5 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 82/239 (34%), Gaps = 49/239 (20%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKRE 69 E++V + V G+DE GRG + GP+V + +G DSK ++ KRE Sbjct: 68 ESIVANDSEPIVLGVDEAGRGPVLGPMVYGVAYALESFSDGLQKKYGFADSKVLTESKRE 127 Query: 70 ELYEKITSSAI----------ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR--- 116 EL+ I S+ + +S + + I + + A + V Sbjct: 128 ELFRLIEESSDNEKGLSKVIGWATTSMTARDISSGMLQSSGKGAYNLNSQAHDVTINLIK 187 Query: 117 -------------------SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157 A + + K DSI ++AAS++AKVTR Sbjct: 188 QVLKKGVKISKIFVDTVGPPATYQAKLKGIFPDIEITVAKKADSIYPIVSAASVVAKVTR 247 Query: 158 DRLMRIAHKKYPDYGFDSHV---GYPT-AKHQQVIKE-----KGPS-CIHRLTFRPLRN 206 D+ + + H GYP+ + + G R ++ ++ Sbjct: 248 DKNIAYYNNHLDI--LKGHKLGSGYPSDPNTKTWLNSNVDSIFGWCFGFARFSWATAKD 304 >gi|68469222|ref|XP_721398.1| likely Ribonuclease HII [Candida albicans SC5314] gi|68470247|ref|XP_720885.1| likely Ribonuclease HII [Candida albicans SC5314] gi|77022682|ref|XP_888785.1| hypothetical protein CaO19_6562 [Candida albicans SC5314] gi|46442777|gb|EAL02064.1| likely Ribonuclease HII [Candida albicans SC5314] gi|46443315|gb|EAL02598.1| likely Ribonuclease HII [Candida albicans SC5314] gi|76573598|dbj|BAE44682.1| hypothetical protein [Candida albicans] Length = 431 Score = 68.5 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 81/238 (34%), Gaps = 44/238 (18%) Query: 13 ELEAMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHK 66 E+ + + P+ G+DE GRG + GP+V + +G DSK ++ Sbjct: 141 EIPQSILQNKTEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDV 200 Query: 67 KREELYEKI-------TSSAIISISSASHQYIDKHNIH-----KATLDAIYHA------- 107 KREEL+++I + ++ + + I + A Sbjct: 201 KREELFKQIEDPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLI 260 Query: 108 -----------VENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT 156 + + + K DSI ++ AS++AKVT Sbjct: 261 KQVLAKGVKISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVT 320 Query: 157 RDRLMRIAHKKYPDY-GFDSHVGYPT-AKHQQVIKE-----KGPS-CIHRLTFRPLRN 206 RD ++ ++ P G GYP+ + + G R +++ ++ Sbjct: 321 RDTNIKFYNENLPLLQGQKLGSGYPSDPNTSKWLNSNVDPVFGWCYGFIRFSWQTAKD 378 >gi|115385935|ref|XP_001209514.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114187961|gb|EAU29661.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 339 Score = 68.5 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 81/257 (31%), Gaps = 51/257 (19%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI---- 57 + ++ P P + +N V G+DE GRG + GP+V +A L + + Sbjct: 36 YYSACPPLPTDVSASEADSQNY-FVLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLAQKY 94 Query: 58 --NDSKKISHKKREELYEKITS-------SAIISISSASHQYIDKHNIHKA--------- 99 +DSK ++ R L + + S + + Q I + A Sbjct: 95 SFDDSKVLTPAVRLNLMRTLCTPGTPLFESCGWATKLLTAQDISSGMMRPAAAAYNLNAQ 154 Query: 100 -------------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSI 146 + + I A + + K DS+ + Sbjct: 155 AMDATIEIIRGIVEERKVNVREVYIDTIGNPASYQQKLERIFPTLKITVAKKADSLYPCV 214 Query: 147 AAASIIAKVTRD-RLMRIAHKKYPDYGFDS--------HVGYPTA-KHQQVIKE-----K 191 +AAS+ AKVTRD L + D GYP+ K ++ Sbjct: 215 SAASVAAKVTRDIALELCYEEIMKAKSLDQSQTTTDTWGSGYPSDSKCVGWLRRNMDPVF 274 Query: 192 GPSCIHRLTFRPLRNLS 208 G R ++ + + Sbjct: 275 GWGNECRFSWGTAKEML 291 >gi|238883322|gb|EEQ46960.1| ribonuclease HI large subunit [Candida albicans WO-1] Length = 427 Score = 68.5 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 43/232 (18%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELY 72 ++ K V G+DE GRG + GP+V + +G DSK ++ KREEL+ Sbjct: 144 LQNKTEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELF 203 Query: 73 EKI-------TSSAIISISSASHQYIDKHNIH-----KATLDAIYHA------------- 107 ++I + ++ + + I + A Sbjct: 204 KQIEDPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQVLAK 263 Query: 108 -----VENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 + + + K DSI ++ AS++AKVTRD ++ Sbjct: 264 GVKISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK 323 Query: 163 IAHKKYPDY-GFDSHVGYPT-AKHQQVIKE-----KGPS-CIHRLTFRPLRN 206 ++ P G GYP+ + + G R +++ ++ Sbjct: 324 FYNENLPLLQGQKLGSGYPSDPNTSKWLNSNVDPVFGWCYGFIRFSWQTAKD 375 >gi|323303245|gb|EGA57043.1| Rnh201p [Saccharomyces cerevisiae FostersB] Length = 307 Score = 68.5 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 83/235 (35%), Gaps = 45/235 (19%) Query: 16 AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKR 68 + + E+ P+ GIDE GRG + GP+V A + +DSKK++ R Sbjct: 24 SALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83 Query: 69 EELYEKITS---------SAIISI--------SSASHQYIDKHNIHKATLDAI------- 104 L+ KI A I S + + +A + Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143 Query: 105 ----YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + + + A + + K DS+ ++ AS++AKVTRD L Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDIL 203 Query: 161 MRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKG------PSCIHRLTFRPLRNLS 208 + K+ P GYP+ K +K P+ + R +++ + L Sbjct: 204 VESL-KRDP--DEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLL 255 >gi|256274456|gb|EEU09358.1| Rnh201p [Saccharomyces cerevisiae JAY291] Length = 307 Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 83/235 (35%), Gaps = 45/235 (19%) Query: 16 AMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKR 68 + + E+ P+ GIDE GRG + GP+V A + +DSKK++ R Sbjct: 24 SALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83 Query: 69 EELYEKITS---------SAIISI--------SSASHQYIDKHNIHKATLDAI------- 104 L+ KI A I S + + +A + Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143 Query: 105 ----YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + + + A + + K DS+ ++ AS++AKVTRD L Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDIL 203 Query: 161 MRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEKG------PSCIHRLTFRPLRNLS 208 + K+ P GYP+ K +K P+ + R +++ + L Sbjct: 204 VESL-KRDP--DEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLL 255 >gi|150864655|ref|XP_001383577.2| hypothetical protein PICST_31007 [Scheffersomyces stipitis CBS 6054] gi|149385911|gb|ABN65548.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 347 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 78/227 (34%), Gaps = 47/227 (20%) Query: 25 PVAGIDEVGRGALAGPVVVA-AIILDPN----NIPFGINDSKKISHKKREELYEKITSSA 79 V G+DE GRG + GP+V A L+ +G DSK + +KR+EL+ I A Sbjct: 71 VVLGVDEAGRGPVLGPMVYGIAFALEKYSTRLQKEYGFADSKTLKEEKRDELFYSIEDEA 130 Query: 80 I-------ISISSASHQYIDKHN------------IHKATL-----------DAIYHAVE 109 + ++ + + I +A + Sbjct: 131 NELNRNVGWATTTMTARDISSGMLRSVLGIGNYNLNEQAHDTTIQLIKEVIAKGVNVKKI 190 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + + + K DSI ++ AS++AKVTRD +R + Sbjct: 191 YVDTVGPPVTYQAKLQKIFPETEVTVAKKADSIYPIVSTASVMAKVTRDANIRWYNHNLD 250 Query: 170 DYGFDSHV---GYPT-AKHQQVI-----KEKGPS-CIHRLTFRPLRN 206 H GYP+ + + K G R +++ ++ Sbjct: 251 V--LKGHKLGSGYPSDPNTSKWLNGNVDKVFGWCYGFIRFSWQTAKD 295 >gi|255640332|gb|ACU20454.1| unknown [Glycine max] Length = 219 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 31/200 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSS--A 79 V GIDE GRG + GP+V + + + DSK + +KREEL+E + + Sbjct: 15 VMGIDEAGRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEEKREELFETLKLNDSI 74 Query: 80 IISISSASHQ------------YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + + +++ + A + + G + Sbjct: 75 GWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGVLLTEVYIDTVGDAGKY 134 Query: 128 DLP-------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH--VG 178 ++ + K DS+ ++ ASI+AKVTRDR R + G Sbjct: 135 EMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRASREWVLDETAENMQRNFGSG 194 Query: 179 Y-PTAKHQQVIKEKGPSCIH 197 Y + + +++ H Sbjct: 195 YPGDPQTKSWLEDH---KHH 211 >gi|119496273|ref|XP_001264910.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181] gi|119413072|gb|EAW23013.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181] Length = 363 Score = 68.1 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 74/240 (30%), Gaps = 60/240 (25%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELY------ 72 V G+DE GRG + GP+V +A + + NDSK ++ R L Sbjct: 77 FVLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTA 136 Query: 73 -EKITSSAIISISSASHQYIDKHNIHKA----------------------TLDAIYHAVE 109 + +S + S + I + A + Sbjct: 137 GNPLHASCGWATKVLSARDISAGMMRPASGAYNLNAQAMDATVEIIRGIVEERRVDIREV 196 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + I A + + K D++ ++AAS++AKVTRD + H+ Sbjct: 197 YIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDVALEFCHEA-- 254 Query: 170 DYGFDS-------------HVGYPT--------AKHQQVIKEKGPSCIHRLTFRPLRNLS 208 YG GYP+ H I G R ++ + + Sbjct: 255 VYGLQRSEAPSLGVATDSWGSGYPSDSKCVSWLRNHMDPI--FGWGNECRFSWGTAKEML 312 >gi|169596915|ref|XP_001791881.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15] gi|111069760|gb|EAT90880.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15] Length = 345 Score = 67.7 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 74/236 (31%), Gaps = 51/236 (21%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKIT- 76 V G+DE GRG + GP+V A L + +DSKK++ + R +L +I Sbjct: 58 EVVLGVDEAGRGPVLGPMVYALFYLPVELHHSLLADTHHFDDSKKLTPEVRSDLMRRICT 117 Query: 77 ------------------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA 118 + S + ++ + + + V Sbjct: 118 PGTDLYEAGGWATRSLSAQDISAHMLSPNVYNLNAQAMDATIDLIKEVLAKGVNVTEIYI 177 Query: 119 LIDGRSIPE-------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA------- 164 GR + K DS+ ++AAS+ AKVTRD + + Sbjct: 178 DTIGRPETYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAAINVCYAPYHSR 237 Query: 165 ------HKKYPDYGFDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 + GYP+ K +K+ G R ++ + L Sbjct: 238 ALEAGTAAENAKVNVAWGSGYPSDSKTSTWLKQNMDPLFGWGNECRFSWGTAKELL 293 >gi|146421659|ref|XP_001486774.1| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC 6260] Length = 343 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 74/231 (32%), Gaps = 42/231 (18%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKR---- 68 + K V G+DE GRG + GP+V + +G DSK + KR Sbjct: 65 LENKTASVVLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELF 124 Query: 69 ---EELYEKITSSAIISISSASHQYIDKHN------------IHKATL-----------D 102 E + ++ + + + + + I +A Sbjct: 125 YMVELMDHELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDL 184 Query: 103 AIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 + + + A + + K DSI ++ AS++AKVTRD + Sbjct: 185 GVNVKKVFVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIH 244 Query: 163 IAHKKYPDY-GFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRN 206 H + G GYP+ + G + R ++ ++ Sbjct: 245 YYHDQLALLQGKVIGSGYPSDPNTSTWLHANVDPVFGWCPLVRFLWQTAKD 295 >gi|159130978|gb|EDP56091.1| ribonuclease HI large subunit [Aspergillus fumigatus A1163] Length = 363 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 73/240 (30%), Gaps = 60/240 (25%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELY------ 72 V G+DE GRG + GP+V +A + + NDSK ++ R L Sbjct: 77 FVLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTA 136 Query: 73 -EKITSSAII--------SISSASHQYIDKHNIHKATLDAIYHAVE-------------- 109 + +S IS+ + A + Sbjct: 137 GNPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIREV 196 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + I A + + K D++ ++AAS++AKVTRD + H+ Sbjct: 197 YIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALEFCHEA-- 254 Query: 170 DYGFDS-------------HVGYPT--------AKHQQVIKEKGPSCIHRLTFRPLRNLS 208 YG GYP+ H I G R ++ + + Sbjct: 255 VYGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPI--FGWGNECRFSWGTAKEML 312 >gi|70991314|ref|XP_750506.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293] gi|66848138|gb|EAL88468.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293] Length = 363 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 73/240 (30%), Gaps = 60/240 (25%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELY------ 72 V G+DE GRG + GP+V +A + + NDSK ++ R L Sbjct: 77 FVLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTA 136 Query: 73 -EKITSSAII--------SISSASHQYIDKHNIHKATLDAIYHAVE-------------- 109 + +S IS+ + A + Sbjct: 137 GNPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIREV 196 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + I A + + K D++ ++AAS++AKVTRD + H+ Sbjct: 197 YIDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALEFCHEA-- 254 Query: 170 DYGFDS-------------HVGYPT--------AKHQQVIKEKGPSCIHRLTFRPLRNLS 208 YG GYP+ H I G R ++ + + Sbjct: 255 VYGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPI--FGWGNECRFSWGTAKEML 312 >gi|281205710|gb|EFA79899.1| hypothetical protein PPL_06719 [Polysphondylium pallidum PN500] Length = 589 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 80/240 (33%), Gaps = 63/240 (26%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82 G+DE G+GA+ GP+V+AA+ LD + G+ DSKK+S ++REELY+ I A+ + Sbjct: 267 IGVDEAGKGAVLGPLVIAAVSLDSAAEQYLKAAGVKDSKKLSAQRREELYDIIKERALYT 326 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ---------- 132 TL+ I + + + + Sbjct: 327 TIYILEARDIDIRRKTQTLNKIESDIFLELIQRSLNHLKSNPQEFIEEVEENNNIVVGGE 386 Query: 133 ----------------------------------------AFAVIKGDSISLSIAAASII 152 + DS +S AASII Sbjct: 387 QFNNNSNKPKKYKIQLDSLESNTGKFSLPFRDAFPAPEHTVICENQADSKYVSTGAASII 446 Query: 153 AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK-HQQVIKEK----G-PSCIHRLTFRPLRN 206 AKV RDR + K GYP+ I+ G RL+++ L N Sbjct: 447 AKVERDRAIAALEKS---VNTPVGCGYPSDATTLTFIESYYQRNGNDHPDVRLSWKTLTN 503 >gi|302308334|ref|NP_985219.2| AER363Wp [Ashbya gossypii ATCC 10895] gi|299789405|gb|AAS53043.2| AER363Wp [Ashbya gossypii ATCC 10895] Length = 304 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 73/226 (32%), Gaps = 41/226 (18%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYEKI 75 + + G+DE GRG + GP+V A + G +DSKK++ R L+ KI Sbjct: 32 EGDAVILGVDEAGRGPVLGPMVYAVAYCTVSYEATIVRQHGFDDSKKLTDAVRRTLFGKI 91 Query: 76 T---------------SSAIISISSASHQYIDKHNIHKATLDAI-----------YHAVE 109 +AI S + + +A I Sbjct: 92 CAAELAGIGFATTGLSPAAISSGMLRYPPTKNYNLNEQAHDTTIALIQGVLDAGVRVEHV 151 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + + C+ K DS ++ AS++AKVTRD H P Sbjct: 152 YVDTVGPPLAYQAKLQQRFPACKITVAKKADSTFPVVSVASVVAKVTRDVW---LHALRP 208 Query: 170 DYGFDSHVGY-PTAKHQQVIKE-----KGPSC-IHRLTFRPLRNLS 208 GY K + G S + R +++ R L Sbjct: 209 TPDDVLGSGYPGDQKTVAWLHRECRPLFGWSPELVRFSWQTCRTLL 254 >gi|170590300|ref|XP_001899910.1| ribonuclease HI large subunit [Brugia malayi] gi|158592542|gb|EDP31140.1| ribonuclease HI large subunit, putative [Brugia malayi] Length = 282 Score = 67.3 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 30/172 (17%) Query: 27 AGIDEVGRGALAGPVVV-AAIILDPNNI---PFGINDSKKISHKKREELYEKITSSAIIS 82 GIDE GRG + GP+V A+ L N G++DSK ++ KREE++E++ S + Sbjct: 32 IGIDEAGRGPVLGPMVYTCAVTLVNNENMLTKIGVDDSKVLTEAKREEIFERMKGSNMSE 91 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL----------------------- 119 I + + + I A L +++ L L Sbjct: 92 IFGYACRSVSAQMISAAMLGRTKYSLNKLSHDCAIELLKLAVDNNINVVDVYVDTVGPKD 151 Query: 120 -IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + Q K D+ ++AAS+IAKV RDR +R +P+ Sbjct: 152 PYQAMLHKKFPDMQIIVSEKADAKFPIVSAASVIAKVKRDRALRNW--TFPE 201 >gi|115289044|gb|ABI85532.1| RnhB [Haemophilus influenzae] Length = 40 Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 F H GYPT H + + E G HR +F P++ Sbjct: 2 FAKHKGYPTKLHLEKLAEFGALPQHRRSFAPVKK 35 >gi|55379775|ref|YP_137625.1| ribonuclease HII [Haloarcula marismortui ATCC 43049] gi|74516083|sp|Q5UXT4|RNH2_HALMA RecName: Full=Ribonuclease HII; Short=RNase HII gi|55232500|gb|AAV47919.1| RNAase HII [Haloarcula marismortui ATCC 43049] Length = 211 Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 69/197 (35%), Gaps = 24/197 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAII------ 81 G+DE G+G + G + AA+ DP +P G+ DSK I ++RE L ++I SA Sbjct: 4 GVDEAGKGPVLGSMFAAAVRADPAALPGGVGDSKDIRPERRERLAKEIRESADAVGIAEI 63 Query: 82 ---SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE-----DLPCQA 133 I + +A + + R D Sbjct: 64 SVERIDADETDMNTLTVEGQAEALSAVARDGLSGTVDAGDTDAARFGRRVADAVDTDVAV 123 Query: 134 FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIK--- 189 A D + AASIIAKV RD + +Y D G GYP+ + + Sbjct: 124 TAEHGADETDSLVGAASIIAKVARDTHVAELAAEYGDVG----SGYPSDPTTRTFLADYV 179 Query: 190 -EKG-PSCIHRLTFRPL 204 G R ++ Sbjct: 180 DRHGELPACARRSWSTC 196 >gi|115289047|gb|ABI85534.1| RnhB [Haemophilus influenzae] gi|115289050|gb|ABI85536.1| RnhB [Haemophilus influenzae] gi|115289053|gb|ABI85538.1| RnhB [Haemophilus influenzae] Length = 40 Score = 65.8 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 F H GYPT H + + E G HR +F P++ Sbjct: 2 FAKHKGYPTKLHLEKLAELGALPQHRRSFAPVKK 35 >gi|115289026|gb|ABI85519.1| RnhB [Haemophilus influenzae] Length = 40 Score = 65.8 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 F H GYPT H + + E G HR +F P++ Sbjct: 2 FAQHKGYPTKLHLEKLAEFGALPQHRRSFAPVKK 35 >gi|195867864|ref|ZP_03079863.1| ribonuclease HII [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660441|gb|EDX53699.1| ribonuclease HII [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 317 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 5/116 (4%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70 E + + N + G DEVG G L G +VV A+ L +++ F I DSKK+S + +E Sbjct: 94 EREIYQNN-QIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQE 152 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +YEKI + ++ S + + ++ + + V SI Sbjct: 153 IYEKIKNQISYTVLSYNPKEYNELINQYNNAHVLKTILHYKAVQSEIVKHQNYSIF 208 >gi|171920922|ref|ZP_02932071.1| ribonuclease HII [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178980|ref|ZP_02964735.1| ribonuclease HII [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188023994|ref|ZP_02996755.1| ribonuclease HII [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518241|ref|ZP_03003771.1| ribonuclease HII [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524398|ref|ZP_03004424.1| ribonuclease HII [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273849|ref|ZP_03206383.1| ribonuclease HII [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554110|ref|YP_002284833.1| ribonuclease HIII [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550434|ref|ZP_03771383.1| ribonuclease HII [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551445|ref|ZP_03772391.1| ribonuclease HII [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903150|gb|EDT49439.1| ribonuclease HII [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209262|gb|EDU06305.1| ribonuclease HII [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019019|gb|EDU57059.1| ribonuclease HII [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998110|gb|EDU67207.1| ribonuclease HII [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659944|gb|EDX53324.1| ribonuclease HII [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249604|gb|EDY74386.1| ribonuclease HII [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541611|gb|ACI59840.1| ribonuclease HIII [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379260|gb|EEH01625.1| ribonuclease HII [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379588|gb|EEH01950.1| ribonuclease HII [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 317 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 5/116 (4%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE 70 E + + N + G DEVG G L G +VV A+ L +++ F I DSKK+S + +E Sbjct: 94 EREIYQNN-QIIIGSDEVGVGDLFGGIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQE 152 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +YEKI + ++ S + + ++ + + V SI Sbjct: 153 IYEKIKNQISYTVLSYNPKEYNELINQYNNAHVLKTILHYKAVQSEIVKHQNYSIF 208 >gi|115289020|gb|ABI85515.1| RnhB [Haemophilus influenzae] gi|115289065|gb|ABI85546.1| RnhB [Haemophilus influenzae] gi|115289068|gb|ABI85548.1| RnhB [Haemophilus influenzae] gi|115289071|gb|ABI85550.1| RnhB [Haemophilus influenzae] Length = 40 Score = 65.4 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 F H GYPT H + + E G HR +F P++ Sbjct: 2 FAKHKGYPTKLHLEKLAEFGTLPQHRRSFAPVKK 35 >gi|115289023|gb|ABI85517.1| RnhB [Haemophilus influenzae] gi|115289029|gb|ABI85521.1| RnhB [Haemophilus influenzae] gi|115289033|gb|ABI85524.1| RnhB [Haemophilus influenzae] gi|115289037|gb|ABI85527.1| RnhB [Haemophilus influenzae] gi|115289041|gb|ABI85530.1| RnhB [Haemophilus influenzae] gi|115289056|gb|ABI85540.1| RnhB [Haemophilus influenzae] gi|115289059|gb|ABI85542.1| RnhB [Haemophilus influenzae] gi|115289062|gb|ABI85544.1| RnhB [Haemophilus influenzae] gi|115289074|gb|ABI85552.1| RnhB [Haemophilus influenzae] gi|115289077|gb|ABI85554.1| RnhB [Haemophilus influenzae] gi|115289080|gb|ABI85556.1| RnhB [Haemophilus influenzae] gi|115289084|gb|ABI85559.1| RnhB [Haemophilus influenzae] gi|115289086|gb|ABI85560.1| RnhB [Haemophilus influenzae] Length = 40 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 173 FDSHVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 F H GYPT H + + E G HR +F P++ Sbjct: 2 FAQHKGYPTKLHLEKLAELGALPQHRRSFAPVKK 35 >gi|11387103|sp|Q9P5X8|RNH2A_NEUCR RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A; AltName: Full=Ribonuclease HI large subunit; Short=RNase HI large subunit; AltName: Full=Ribonuclease HI subunit A gi|7800995|emb|CAB91392.1| probable 35 kDa ribonuclease H [Neurospora crassa] Length = 317 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 78/244 (31%), Gaps = 52/244 (21%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDS 60 P P + N G+DE GRG + GP+V +A L +DS Sbjct: 32 PIPP------QLLADNTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDS 85 Query: 61 KKISHKKREELYEKIT-------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113 K ++ R L +++ + + SS S I + + + + Sbjct: 86 KVLTPAVRLSLMKELCTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDA 145 Query: 114 IPRSALIDGRSIPEDLPC----------------------QAFAVIKGDSISLSIAAASI 151 + K DS+ ++AAS+ Sbjct: 146 TIALIKGIYERGVNVTDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASV 205 Query: 152 IAKVTRD-RLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPL 204 +AKVTRD L + + +G GYP+ K +K+ G R ++ Sbjct: 206 VAKVTRDIALEVLWADRTMAWG----SGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTA 261 Query: 205 RNLS 208 +++ Sbjct: 262 KDML 265 >gi|119196321|ref|XP_001248764.1| hypothetical protein CIMG_02535 [Coccidioides immitis RS] Length = 353 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 76/236 (32%), Gaps = 55/236 (23%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELY------- 72 V G+DE GRG + GP+V +A L + NDSK ++ R L Sbjct: 70 VLGVDEAGRGPVLGPMVYSAFYLPMPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLCTPD 129 Query: 73 EKITSSAIISISSASHQYIDKHNIH--------KATLDAIYHAVE--------------N 110 + S +I S + I A + Sbjct: 130 HPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVKEVY 189 Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA------ 164 + I + + K D++ ++AAS+ AKVTRD + I Sbjct: 190 IDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALEICYEELQR 249 Query: 165 ------HKKYPDYGFDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 ++ + G+ GYP+ K +K+ G R ++ ++L Sbjct: 250 QRAGMVEMEHMNNGW--GSGYPSDSKCVTWLKKEMHPLFGWGNECRFSWGTAKDLL 303 >gi|226500696|ref|NP_001152248.1| ribonuclease HI large subunit [Zea mays] gi|195654267|gb|ACG46601.1| ribonuclease HI large subunit [Zea mays] Length = 284 Score = 65.0 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 73/204 (35%), Gaps = 33/204 (16%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEK 74 + GIDE GRG + GP+V + + DSK + ++REEL+E Sbjct: 8 WATKEPCLMGIDEAGRGPVLGPMVYGCMYCAYSYNNTLATLKFADSKTLKEEQREELFES 67 Query: 75 ITSSA--IISISSASHQYI-------------DKHNIHKATLDAIYHAVE-------NLQ 112 + ++ + + I ++ + + A + Sbjct: 68 LKVNSSIRWEVDVICPKDISAKMLKKKSKVNLNEISHNSAMGLVRKVLRMGVLLAEVYVD 127 Query: 113 VIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172 + + + + + K DS+ I+ ASI+AKVTRDR +R + + Sbjct: 128 TVGDPEKYRTKLTEKFIGIKFVVAKKADSLYPVISGASIVAKVTRDRALRNW--VFDETA 185 Query: 173 FDSH----VGY-PTAKHQQVIKEK 191 H GY ++ +++ Sbjct: 186 LSLHMRTRSGYLGDPDTKRWLEDH 209 >gi|283769498|ref|ZP_06342394.1| ribonuclease HIII [Bulleidia extructa W1219] gi|283103766|gb|EFC05152.1| ribonuclease HIII [Bulleidia extructa W1219] Length = 281 Score = 65.0 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 73/208 (35%), Gaps = 30/208 (14%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKK 62 P +P ++L +P AG DEVG G GPVVV A + N + GI DSK Sbjct: 62 PNQPSYKL---------YPQAGSDEVGTGDYFGPVVVCASYVCENQLDLLRSYGITDSKA 112 Query: 63 ISHKKREELYEKITSSAIISISSASHQYIDKHNIHKAT-----------LDAIYHAVENL 111 +S K ++ + + + I S S + + + A+ V+ Sbjct: 113 MSDKDIQKAAKSLQNQFTHVIFSLSPKAYNDLHRRYNMNATKALLHNQAYLALSKRVDLP 172 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISL---SIAAASIIAKVTRDRLMRIAHKKY 168 ++ ++ L + + + A+ ++ + R+R + Sbjct: 173 EICMVDQFTAEKNYFSYLAYEPEIFHRLQFETKAESRYASVALASVFARNRFLEEWSYME 232 Query: 169 PDYGFDSHVGYPT---AKHQQVIKEKGP 193 Y F G ++ +K+ G Sbjct: 233 EKYNFHFQKGAGALVDRCAKEFVKQFGY 260 >gi|289808317|ref|ZP_06538946.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 50 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 24/39 (61%), Positives = 28/39 (71%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKI 63 VAG+DEVGRG L G VV AA+ILDP G+ND +KI Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDYQKI 49 >gi|303322466|ref|XP_003071226.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735 delta SOWgp] gi|240110925|gb|EER29081.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735 delta SOWgp] gi|320040565|gb|EFW22498.1| ribonuclease HI large subunit [Coccidioides posadasii str. Silveira] Length = 353 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 75/236 (31%), Gaps = 55/236 (23%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELY------- 72 V G+DE GRG + GP+V +A L + NDSK ++ R L Sbjct: 70 VLGVDEAGRGPVLGPMVYSAFYLPMPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLCTPD 129 Query: 73 EKITSSAIISISSASHQYIDKHNIH--------KATLDAIYHAVE--------------N 110 + S +I S + I A + Sbjct: 130 HPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVKEVY 189 Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR----LMRIAHK 166 + I + + K D++ ++AAS+ AKVTRD K Sbjct: 190 IDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALEICYEELQK 249 Query: 167 --------KYPDYGFDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 ++ + G+ GYP+ K +K+ G R ++ ++L Sbjct: 250 QRAGMVEMEHMNDGW--GSGYPSDSKCVTWLKKEMHPLFGWGNECRFSWGTAKDLL 303 >gi|257456663|ref|ZP_05621856.1| ribonuclease HII [Treponema vincentii ATCC 35580] gi|257445930|gb|EEV20980.1| ribonuclease HII [Treponema vincentii ATCC 35580] Length = 42 Score = 64.6 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 21/36 (58%), Positives = 25/36 (69%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKK 62 GIDE GRGALAGPV AA+IL + ++DSKK Sbjct: 4 CGIDEAGRGALAGPVYAAAVILPASFDVSVLDDSKK 39 >gi|145238902|ref|XP_001392098.1| ribonuclease H2 subunit A [Aspergillus niger CBS 513.88] gi|134076599|emb|CAK45152.1| unnamed protein product [Aspergillus niger] Length = 352 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 83/239 (34%), Gaps = 58/239 (24%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELY------ 72 + G+DE GRG + GP+V +A L + + NDSK ++ R L Sbjct: 67 LILGVDEAGRGPVLGPMVYSAFYLPQDLHHTLLTRDYSFNDSKALTPGVRANLMKLLCTP 126 Query: 73 -EKITSSAIISISSASHQYIDKHNI-------------HKATLDAIYHAVENLQVIPRSA 118 + S ++ S + I + AT++ I +E+ + R Sbjct: 127 GNPLHESCGWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGIIEDRNMDVREV 186 Query: 119 LIDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 ID P + + K DS+ ++AAS+ AKVTRD + Sbjct: 187 YIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRD---VALDLCHQ 243 Query: 170 DYGFDSH--------------VGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 D+H GYP+ K +K+ G R ++ + L Sbjct: 244 AIYEDTHAEDSPRAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECRFSWGTAKELL 302 >gi|71409033|ref|XP_806884.1| ribonuclease H [Trypanosoma cruzi strain CL Brener] gi|70870756|gb|EAN85033.1| ribonuclease H, putative [Trypanosoma cruzi] Length = 324 Score = 64.2 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 71/220 (32%), Gaps = 51/220 (23%) Query: 25 PVAGIDEVGRGALAGPVVV-AAII-------------------LDPNNIPFGINDSKKI- 63 V GIDE GRG + GP+V A+I L N + +K+ Sbjct: 40 MVLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQKLK 99 Query: 64 ---------SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI 114 + + I + ++S + I +AT ++ + Sbjct: 100 TFSTFTVFVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVGP- 158 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 R + K ++ +AAAS++AKV RDR + G D Sbjct: 159 --PESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHIERL-------GID 209 Query: 175 SHVGYPT-AKHQQVIKEKGPS---------CIHRLTFRPL 204 GYP+ K ++ RL++ P+ Sbjct: 210 VGSGYPSDPKVMTWVRSH-VHRFFVLPREFDFVRLSWGPV 248 >gi|322827961|gb|EFZ31928.1| ribonuclease H, putative [Trypanosoma cruzi] Length = 324 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 71/220 (32%), Gaps = 51/220 (23%) Query: 25 PVAGIDEVGRGALAGPVVV-AAII-------------------LDPNNIPFGINDSKKI- 63 V GIDE GRG + GP+V A+I L N + +K+ Sbjct: 40 MVLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQKLK 99 Query: 64 ---------SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI 114 + + I + ++S + I +AT ++ + Sbjct: 100 TFSTFTVVVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVGP- 158 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 R + K ++ +AAAS++AKV RDR + G D Sbjct: 159 --PESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHIERL-------GID 209 Query: 175 SHVGYPT-AKHQQVIKEKGPS---------CIHRLTFRPL 204 GYP+ K ++ RL++ P+ Sbjct: 210 VGSGYPSDPKVMTWVRSH-VHRFFVLPREFDFVRLSWGPV 248 >gi|261332533|emb|CBH15528.1| ribonuclease H, putative [Trypanosoma brucei gambiense DAL972] Length = 326 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 43/220 (19%) Query: 25 PVAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKITSSA 79 V GIDE GRG + GP+V A I L ++ G NDSK ++ +R+ + K+ A Sbjct: 40 LVMGIDEAGRGPVVGPMVYTGAMIALHEHDRLVDYCGANDSKVLNEDQRKSVVSKLHELA 99 Query: 80 IISISSASH--------------QYIDKHNIHKATLDAIYHAVENLQVIP--------RS 117 + ++ + A +E + ++ Sbjct: 100 TFRTFTVVVTPDEIAAAMTGVHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYVDTVGPP 159 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + + K + +AAAS++AKV RD + G D Sbjct: 160 ESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHIERL-------GIDVGS 212 Query: 178 GYPT-AKHQQVIKEK--------GPSCIHRLTFRPLRNLS 208 GYP+ K ++ RL++ P+ L+ Sbjct: 213 GYPSDPKVMMWVRSHVHRFFVMPRECNFVRLSWAPVTQLA 252 >gi|71747398|ref|XP_822754.1| ribonuclease H [Trypanosoma brucei TREU927] gi|70832422|gb|EAN77926.1| ribonuclease H, putative [Trypanosoma brucei] Length = 326 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 43/220 (19%) Query: 25 PVAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKITSSA 79 V GIDE GRG + GP+V A I L ++ G NDSK ++ +R+ + K+ A Sbjct: 40 LVMGIDEAGRGPVVGPMVYTGAMIALHEHDRLVDYCGANDSKVLNEDQRKSVVSKLHELA 99 Query: 80 IISISSASH--------------QYIDKHNIHKATLDAIYHAVENLQVIP--------RS 117 + ++ + A +E + ++ Sbjct: 100 TFRTFTVVVTPDEIAAAMTGAHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYVDTVGPP 159 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + + K + +AAAS++AKV RD + G D Sbjct: 160 ESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHIERL-------GIDVGS 212 Query: 178 GYPT-AKHQQVIKEK--------GPSCIHRLTFRPLRNLS 208 GYP+ K ++ RL++ P+ L+ Sbjct: 213 GYPSDPKVMMWVRSHVHRFFVMPRECNFVRLSWAPVTQLA 252 >gi|160914268|ref|ZP_02076489.1| hypothetical protein EUBDOL_00278 [Eubacterium dolichum DSM 3991] gi|158433895|gb|EDP12184.1| hypothetical protein EUBDOL_00278 [Eubacterium dolichum DSM 3991] Length = 288 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 55/184 (29%), Gaps = 20/184 (10%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKI----------SHKKREELY 72 G DEVG G GPVVV A + + I DSK I + K+ Sbjct: 80 CGSDEVGTGDYFGPVVVCASFVKEEDVSDLKKLNIQDSKAIDDTTIRTLAPTLIKQLPHS 139 Query: 73 EKITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I +A + ++ + + ++A + + + S + Sbjct: 140 LLILDNAKYNQIHATNNMVAMKAKLHNQAYVHLKHKLGSLPSFCVVDQFVQAASYYRYIQ 199 Query: 131 CQAFAVIKGDSISL---SIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + V + A + + + R ++ Y F G + Sbjct: 200 MEKEIVRNLHFETKAENKYLAVACASIIARYAFLKTFDAMEKHYDFHFLKGAGSKV-DAN 258 Query: 188 IKEK 191 I+E Sbjct: 259 IREF 262 >gi|322699282|gb|EFY91045.1| Ribonuclease H2 subunit A [Metarhizium acridum CQMa 102] Length = 337 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 73/229 (31%), Gaps = 48/229 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILD-PNNIPF-----GINDSKKISHKKREELYEKITS---- 77 G+DE GRG + GP+V L P + P +DSK ++ R L + + Sbjct: 58 GVDEAGRGPVLGPMVYGIFYLPLPQSGPLLRDTHHFDDSKALTAAARSSLMRALCTEGTD 117 Query: 78 -SAIISIS------------SASHQYIDKHNIHK----------ATLDAIYHAVENLQVI 114 A + + N A + + + Sbjct: 118 LHAQCGWATAALSARDISAGMLRPAGVYNLNAQAVDATVALIRGALKRGLNIREVYVDTV 177 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA---------H 165 + A R + K DS+ ++AAS+ AKVTRD + Sbjct: 178 GQPAAHQARLQRVFPTTKITVAKKADSLYPCVSAASVCAKVTRDAALEALYGARRDGDGD 237 Query: 166 KKYPDYGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 + G + GYP+ A+ ++ G R ++ +++ Sbjct: 238 GEGAAAGMEWGSGYPSDARCVGWLRRNMHPVFGWGPECRFSWGTAKDML 286 >gi|50291445|ref|XP_448155.1| hypothetical protein [Candida glabrata CBS 138] gi|49527466|emb|CAG61106.1| unnamed protein product [Candida glabrata] Length = 307 Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 80/235 (34%), Gaps = 42/235 (17%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHK 66 E+ V + G+DE GRG + GP+V + +DSKK++ Sbjct: 29 EIPKSVIANESPVILGVDEAGRGPVMGPMVYGISYCTKEYQDKVLIPKYTFDDSKKLTDP 88 Query: 67 KREELYEK---------------ITSSAIISISSASHQYIDKHNIHKATLDAIYHA---- 107 R L+ K IT I + S + + +A + Sbjct: 89 VRRMLFSKMYAGEIDQVGYATTAITPYDISTGMSRYPPSRNYNLNEQAHDVTMALIQGVI 148 Query: 108 -------VENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRL 160 + + A + + K DS+ ++ AS++AKVTRD L Sbjct: 149 DRGVSIDHVYVDTVGPPASYQRKLEDRFPSIKFTVAKKADSLYCVVSVASVVAKVTRDLL 208 Query: 161 MRIAHKKYPDYGFDSHVGYPT-AKHQQVIK-----EKG-PSCIHRLTFRPLRNLS 208 + ++ P GYP+ K +K G P I R +++ + L Sbjct: 209 IESL-RRTP--DEIMGSGYPSDPKTVAWLKGNQKPLLGWPIEIVRFSWQTCQTLL 260 >gi|255931627|ref|XP_002557370.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255] gi|211581989|emb|CAP80150.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255] Length = 343 Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 71/234 (30%), Gaps = 54/234 (23%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYE------ 73 V GIDE GRG + GP+V A L + + +DSK ++ R L Sbjct: 62 VLGIDEAGRGPVLGPMVYGAFYLPLDLHHSLLTEKHSFDDSKVLTPAVRANLMHLLNTPG 121 Query: 74 -KITSSAIISISSASHQYIDKHNIH--------KATLDAIYHAVE--------------N 110 + S +I S + I + A + Sbjct: 122 DSLFESCGYAIKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDVREVY 181 Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD 170 + I A + + K DS+ ++AAS+ AKVTRD Y Sbjct: 182 IDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRD---VALEVMYEA 238 Query: 171 YGFDSH----------VGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 H GYP+ K ++ G R ++ + + Sbjct: 239 VLQAEHSLSPTSETWGSGYPSDSKCVGWLRRNMDPVFGWGNECRFSWGTAKEML 292 >gi|241154557|ref|XP_002407329.1| ribonuclease HI large subunit, putative [Ixodes scapularis] gi|215494090|gb|EEC03731.1| ribonuclease HI large subunit, putative [Ixodes scapularis] Length = 306 Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 67/228 (29%), Gaps = 39/228 (17%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI 75 K+ + G+DE GRG + GP+V + G DSK ++ +KREEL + Sbjct: 24 AKSYPCMLGVDEAGRGPVLGPMVYGIAYCPVEFEEDLKRLGFADSKTLTEEKREELVGVM 83 Query: 76 TSSAI---ISISSASHQYIDKHNIH------KATLDAIYHAVENLQVIPRSALIDGRSIP 126 + + S I H ++ A + + + + + Sbjct: 84 EQRSESLGWMVEVISPTVICNHMLNMSKYSLNAISHDSAIGLIKQALDDGVCVTEVKLER 143 Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKV--TRDRLMRIAHKKYPDYGFDSHVGYP---- 180 + P + K S + + A+ R L+ H + + + Sbjct: 144 PENPLHESKLPKLRHASRNTNRHAFGARTIIFRIALLFHRHFECSTFHLSKKKFHGGRSM 203 Query: 181 ------------------TAKHQQVIKE--KGPSCIHRLTFRPLRNLS 208 T K + G + R ++ L Sbjct: 204 DCSNSLLLWGVVLLSDPATKKFLSAHVDNVFGFPSLVRFSWSTAEKLL 251 >gi|313901027|ref|ZP_07834515.1| ribonuclease HIII [Clostridium sp. HGF2] gi|312953985|gb|EFR35665.1| ribonuclease HIII [Clostridium sp. HGF2] Length = 300 Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 62/187 (33%), Gaps = 26/187 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISH----------KKREELY 72 AG DEVG G GPV V A + ++ F GI DSK I +R Sbjct: 93 AGSDEVGTGDYFGPVTVCATCVRHEDVEFLRSLGIQDSKAIDDTAIRRMAPKLMERLPHS 152 Query: 73 EKITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 I +A + + I ++A + Q + S L Sbjct: 153 LLILDNATYNRIHGENNMVAIKSRMHNQAYVHLRKKMGSLPQFCIIDQFVQKTSYYRYLK 212 Query: 131 CQ------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 + K ++ LS+AA SIIA R ++ Y F G + Sbjct: 213 HEREVVYDIHFETKAENKYLSVAAGSIIA---RYAFLKAFDAMCEQYDFTFLKGAGSKV- 268 Query: 185 QQVIKEK 191 Q I+E Sbjct: 269 DQNIREF 275 >gi|221481429|gb|EEE19819.1| ribonuclease HI large subunit, putative [Toxoplasma gondii GT1] gi|221501972|gb|EEE27722.1| ribonuclease HI large subunit, putative [Toxoplasma gondii VEG] Length = 366 Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 65/175 (37%), Gaps = 28/175 (16%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREEL 71 + PV GIDE GRG + G +V A ++DSKK+ +REE Sbjct: 14 FHKCGGKPVRLGIDEAGRGCVLGAMVYACFFCAAEDEKKELKALNVDDSKKLKEWEREEA 73 Query: 72 YEKITSS---AIISISSASHQYI------------DKHNIHKATLDAIYHAVENLQVIPR 116 +E I + SI + + I ++ + A + + V Sbjct: 74 FEAIQAKRDLFGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSGVNVTEV 133 Query: 117 SALIDGRSI-------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 G + + K DS+ ++AASI+AKVTRDR++ Sbjct: 134 FVDTVGNANAYQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAKVTRDRMLVRW 188 >gi|237844165|ref|XP_002371380.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49] gi|211969044|gb|EEB04240.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49] Length = 366 Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 65/175 (37%), Gaps = 28/175 (16%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREEL 71 + PV GIDE GRG + G +V A ++DSKK+ +REE Sbjct: 14 FHKCGGKPVRLGIDEAGRGCVLGAMVYACFFCAAEDEKKELKALNVDDSKKLKEWEREEA 73 Query: 72 YEKITSS---AIISISSASHQYI------------DKHNIHKATLDAIYHAVENLQVIPR 116 +E I + SI + + I ++ + A + + V Sbjct: 74 FEAIQAKRDLFGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSGVNVTEV 133 Query: 117 SALIDGRSI-------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 G + + K DS+ ++AASI+AKVTRDR++ Sbjct: 134 FVDTVGNANAYQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAKVTRDRMLVRW 188 >gi|50310553|ref|XP_455296.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644432|emb|CAG98004.1| KLLA0F04774p [Kluyveromyces lactis] Length = 304 Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 41/231 (17%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREE 70 + E + G+DE GRG + GP+V +G +DSKK++ R++ Sbjct: 38 KSILESTDEIILGVDEAGRGPVMGPMVYGISYCTRQYEKDVICKYGFDDSKKLTDPVRQK 97 Query: 71 LYEKIT-------------------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENL 111 L+ I SS + + +++ + Sbjct: 98 LFAMIYGGEIDGVGYATTSITACDISSGMFRFPPEKNYNLNEQAHDVTIALIDDVLKSGV 157 Query: 112 QVIPRSALIDGRSIPE-------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 +V G I C+ K DSI ++ AS++AKVTRD ++ Sbjct: 158 KVGHVYVDTVGPPISYQKKLESIFPQCKFTVAKKADSIYPIVSVASVVAKVTRDIILSQC 217 Query: 165 HKKYPDYGFDSHVGY-PTAKHQQVIKE-----KGPSCI-HRLTFRPLRNLS 208 K + GY +K Q ++ G S R +++ + Sbjct: 218 KKTEDEI---LGSGYPGDSKTVQWLRNEMKPLMGWSPYMVRFSWQTCATML 265 >gi|71408510|ref|XP_806655.1| ribonuclease H [Trypanosoma cruzi strain CL Brener] gi|70870462|gb|EAN84804.1| ribonuclease H, putative [Trypanosoma cruzi] Length = 324 Score = 63.1 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 73/217 (33%), Gaps = 45/217 (20%) Query: 25 PVAGIDEVGRGALAGPVVV--AAIILDPNNIPF---GINDSKKISHKKREELYEKIT--- 76 V GIDE GRG + GP+V A I L ++ G+NDSK + +R+++ K+ Sbjct: 40 MVLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQELK 99 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAI-------------------YHAVENLQVIPRS 117 + + ++ + + + Sbjct: 100 TFSTFTVVVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVGPP 159 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 R + K ++ +AAAS++AKV RDR + G D Sbjct: 160 ESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHIERL-------GIDVGS 212 Query: 178 GYPT-AKHQQVIKEKGPS---------CIHRLTFRPL 204 GYP+ K ++ RL++ P+ Sbjct: 213 GYPSDPKVMTWVRSH-VHRFFVLPREFDFVRLSWGPV 248 >gi|241957291|ref|XP_002421365.1| ribonuclease large subunit, putative [Candida dubliniensis CD36] gi|223644709|emb|CAX40699.1| ribonuclease large subunit, putative [Candida dubliniensis CD36] Length = 366 Score = 63.1 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 78/232 (33%), Gaps = 43/232 (18%) Query: 18 VREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELY 72 ++ + V G+DE GRG + G +V + +G DSK ++ KREEL+ Sbjct: 83 LQNETEPIVLGVDEAGRGPVLGAMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELF 142 Query: 73 EKI-------TSSAIISISSASHQYIDKHNIH-----KATLDAIYHA------------- 107 ++I + ++ + + I + A Sbjct: 143 KQIEDPEHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTIDLIKQVLAK 202 Query: 108 -----VENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 + + + K DSI ++ AS++AKVTRD ++ Sbjct: 203 GVKISKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK 262 Query: 163 IAHKKYPDY-GFDSHVGYPT-AKHQQVIKE-----KGPS-CIHRLTFRPLRN 206 ++ P G GYP+ + + G R +++ ++ Sbjct: 263 FYNENLPLLQGQKLGSGYPSDPNTNKWLNSNVDPVFGWCYGFIRFSWQTAKD 314 >gi|257082772|ref|ZP_05577133.1| ribonuclease HIII [Enterococcus faecalis E1Sol] gi|256990802|gb|EEU78104.1| ribonuclease HIII [Enterococcus faecalis E1Sol] Length = 306 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 26/197 (13%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKK 62 P+ P + W V G DEVG G+ GPV V A +D + I G+ DSK+ Sbjct: 80 PQTPTLP-----ADFGNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKE 134 Query: 63 ISHKKREELYEKITSSAIISISSASHQYIDKHN------------IHKATLDAIYHAVE- 109 ++ + +L I + + ++ ++A + Sbjct: 135 LTDPQIIQLSHVIKELIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPT 194 Query: 110 -NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAH 165 ++ + + K ++ A + + ++R + Sbjct: 195 KPEGILIDQFTPENNYRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELD 254 Query: 166 KKYPDYGFDSHVGYPTA 182 K+ + GF G + Sbjct: 255 KESAELGFSVPSGAGSK 271 >gi|331244484|ref|XP_003334882.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309313872|gb|EFP90463.1| ribonuclease HI large subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 143 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKRE 69 E ++ N + GIDE GRG + GP+V A G DSK ++H++RE Sbjct: 43 EEQLKRDN--WIMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRRRE 100 Query: 70 ELYEKITS 77 EL E I Sbjct: 101 ELLEMIVH 108 >gi|282916389|ref|ZP_06324151.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus D139] gi|283770200|ref|ZP_06343092.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus H19] gi|282319829|gb|EFB50177.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus D139] gi|283460347|gb|EFC07437.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus H19] Length = 318 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 25/208 (12%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 91 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 149 Query: 69 EELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 150 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDY 171 I + + ++ I L A ++ + ++R + + + Sbjct: 210 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNI 269 Query: 172 GFDSHVGYPTA-KHQQV--IKEKGPSCI 196 G T IK+ G S + Sbjct: 270 NMTIPKGAGTKVDVIAAKIIKKYGLSRL 297 >gi|309778053|ref|ZP_07672993.1| ribonuclease HIII [Erysipelotrichaceae bacterium 3_1_53] gi|308914190|gb|EFP59990.1| ribonuclease HIII [Erysipelotrichaceae bacterium 3_1_53] Length = 299 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 61/189 (32%), Gaps = 25/189 (13%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHK----- 66 K ++P AG DEVG G GPV V A + ++ F GI DSK I Sbjct: 81 RPAYSKEIYPQAGSDEVGTGDYFGPVTVCATYVTAQDVEFLREQGIQDSKAIDDTAIRRM 140 Query: 67 -----KREELYEKITSSAIIS--ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 +R I +A + + I ++A + + Sbjct: 141 APKLIERLPHSLLILDNATYNRIHGENNMVAIKSRMHNQAYVHLRKKLGALPEFCIIDQF 200 Query: 120 IDGRSIPEDLP------CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + S L K ++ LS+AA SIIA R ++ Y F Sbjct: 201 VQKSSYYRYLQKERDVVYDIHFETKAENKYLSVAAGSIIA---RYAFLKSFDAMCERYDF 257 Query: 174 DSHVGYPTA 182 G + Sbjct: 258 TFLKGAGSK 266 >gi|257870169|ref|ZP_05649822.1| ribonuclease HIII [Enterococcus gallinarum EG2] gi|257804333|gb|EEV33155.1| ribonuclease HIII [Enterococcus gallinarum EG2] Length = 311 Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 27/183 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+VV A+ + +P G+ DSK ++ + + KI Sbjct: 93 WSVVGSDEVGNGSYFGPLVVCAVYASKDQLPALKALGVKDSKMLTDPQIRAMAPKIKKLV 152 Query: 80 IISISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + + ++ ++A + Sbjct: 153 PYQLLTVEPTKYNEIQPKYNTVRMKVALHNQAIRLLLQKIAPKTPDAILIDQFTSEKNYR 212 Query: 128 DL--------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + F KG+ L++AAASI+ R + K + G G Sbjct: 213 TYLKSEKNQITEKLFFATKGEQYHLAVAAASIL---CRTVFLEELEKASQEVGLQLPSGA 269 Query: 180 PTA 182 + Sbjct: 270 GSK 272 >gi|302657829|ref|XP_003020627.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517] gi|291184480|gb|EFE40009.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517] Length = 361 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 77/244 (31%), Gaps = 61/244 (25%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELY------- 72 V GIDE GRG + GP+V +A L + + +DSK ++ + R L Sbjct: 68 VLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQG 127 Query: 73 EKITSSAIISISSASHQYIDK---------HNIHKATLDAIYHAVE-------------- 109 + S ++ S + I A + Sbjct: 128 HPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDVKEV 187 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR-----LMRIA 164 + I + R + + K DS+ ++AAS+ AKVTRD Sbjct: 188 YVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESWL 247 Query: 165 HKKYPDYGFDS--------------HVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPL 204 +++ ++ GYP+ K +K+ G R ++ Sbjct: 248 NQREKQRTLETGEDEATTADEILTWGSGYPSDGKCVGWLKKDMNRLFGWGVECRFSWGTS 307 Query: 205 RNLS 208 + L Sbjct: 308 KELL 311 >gi|229546057|ref|ZP_04434782.1| ribonuclease HIII [Enterococcus faecalis TX1322] gi|256852909|ref|ZP_05558279.1| ribonuclease HIII [Enterococcus faecalis T8] gi|307291247|ref|ZP_07571131.1| ribonuclease HIII [Enterococcus faecalis TX0411] gi|229308830|gb|EEN74817.1| ribonuclease HIII [Enterococcus faecalis TX1322] gi|256711368|gb|EEU26406.1| ribonuclease HIII [Enterococcus faecalis T8] gi|306497478|gb|EFM67011.1| ribonuclease HIII [Enterococcus faecalis TX0411] gi|315030923|gb|EFT42855.1| ribonuclease HIII [Enterococcus faecalis TX4000] Length = 305 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + +K ++A + ++ + Sbjct: 149 LIPYKLLIVEPKKYNKIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|293401505|ref|ZP_06645648.1| ribonuclease HIII [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305143|gb|EFE46389.1| ribonuclease HIII [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 300 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 73/214 (34%), Gaps = 37/214 (17%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GIND 59 + P+ PH E +P G DEVG G GP+ V + ++PF GI D Sbjct: 76 SDQPQNPHTEW---------YPQCGSDEVGTGDYFGPITVCTTYVKKEDVPFLRELGIQD 126 Query: 60 SKKISHKKREELYEKIT----------SSAIIS--ISSASHQYIDKHNIHKATLDAIYHA 107 SK ++ ++ EL + +A + + I ++A + Sbjct: 127 SKAVTDERIRELGPILCERLTYSLLVLDNAKYNAIHPQYNMVAIKSRLHNQAYVHLRRKL 186 Query: 108 VENLQVIPRSALIDGRSIPEDLP------CQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 + + +S L K ++ LS+AA SIIA R + Sbjct: 187 GSLPSLCIIDQFVQAKSYYRYLHDVEEVVHTIHFETKAENKYLSVAAGSIIA---RYAFL 243 Query: 162 RIAHKKYPDYGFDSHVGYPTA---KHQQVIKEKG 192 + Y F G + + +K+ G Sbjct: 244 QAFDAMCQHYEFPFVKGAGSKVDQAIRAFVKQYG 277 >gi|294780117|ref|ZP_06745490.1| ribonuclease HIII [Enterococcus faecalis PC1.1] gi|307268535|ref|ZP_07549908.1| ribonuclease HIII [Enterococcus faecalis TX4248] gi|294452792|gb|EFG21221.1| ribonuclease HIII [Enterococcus faecalis PC1.1] gi|306515131|gb|EFM83673.1| ribonuclease HIII [Enterococcus faecalis TX4248] gi|315034079|gb|EFT46011.1| ribonuclease HIII [Enterococcus faecalis TX0017] gi|315036747|gb|EFT48679.1| ribonuclease HIII [Enterococcus faecalis TX0027] gi|323480498|gb|ADX79937.1| ribonuclease HIII [Enterococcus faecalis 62] Length = 305 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 149 RIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|256958755|ref|ZP_05562926.1| ribonuclease HIII [Enterococcus faecalis DS5] gi|257078784|ref|ZP_05573145.1| ribonuclease HIII [Enterococcus faecalis JH1] gi|256949251|gb|EEU65883.1| ribonuclease HIII [Enterococcus faecalis DS5] gi|256986814|gb|EEU74116.1| ribonuclease HIII [Enterococcus faecalis JH1] Length = 306 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 150 RIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 269 Query: 181 TA 182 + Sbjct: 270 SK 271 >gi|289810861|ref|ZP_06541490.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 66 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 40/66 (60%) Query: 119 LIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 ++ + +LP + AV+KGDS I+AASI+AKVTRD M +P YGF H G Sbjct: 1 MLIDGNRCPELPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFAQHKG 60 Query: 179 YPTAKH 184 YPTA H Sbjct: 61 YPTAFH 66 >gi|329577099|gb|EGG58572.1| ribonuclease HIII [Enterococcus faecalis TX1467] Length = 289 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 73 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 132 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 133 RIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 192 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 193 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 252 Query: 181 TA 182 + Sbjct: 253 SK 254 >gi|121702279|ref|XP_001269404.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1] gi|119397547|gb|EAW07978.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1] Length = 362 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 75/239 (31%), Gaps = 59/239 (24%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELY------ 72 V G+DE GRG + GP+V +A L + +DSK ++ R L Sbjct: 78 FVLGVDEAGRGPVLGPMVYSAFYLPHTLHHSLLARDYSFDDSKVLTAGVRANLMRLLCTA 137 Query: 73 -EKITSSAII--------SISSASHQYIDKHNIHKATLDAIYHAVE-------------- 109 + +S ISS + A + Sbjct: 138 GNPLHASCGWATKLLSARDISSGMMRPGSGVYNLNAQAMDATVEIIRGIVEERKVDVREV 197 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + I A + + K DS+ ++AAS+ AKVTRD + + H + Sbjct: 198 YIDTIGNPATYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHDAFQ 257 Query: 170 D--------------YGFDSHVGYPTA-KHQQVIKEK-----GPSCIHRLTFRPLRNLS 208 +G GYP+ K +++ G R ++ + + Sbjct: 258 ALQQLETSHEMATDSWG----SGYPSDSKCVNWLRKHMDPVFGWGNECRFSWGTSKEML 312 >gi|157364353|ref|YP_001471120.1| ribonuclease HII/HIII [Thermotoga lettingae TMO] gi|157314957|gb|ABV34056.1| ribonuclease HII/HIII [Thermotoga lettingae TMO] Length = 305 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 22/207 (10%) Query: 1 MFCNSIPERPHFELEAMVRE------KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI- 53 +FC ++ + E KN+ P G DEVG+G + GPVVV A+ + Sbjct: 75 LFCKDS----DLSIQKRILENLPADPKNILPAIGSDEVGKGDVFGPVVVTAVYIGCKEYV 130 Query: 54 ---PFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHA--- 107 I DSK I+ +K E+ +KI + +I + +++ I+ L H Sbjct: 131 ALKDVDIKDSKSINDRKILEISKKIKNICPHAIVVFEPERLNEKKINMNRLLEQMHIDAI 190 Query: 108 ---VENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 +E + G + +I + ++ A + + V+R + Sbjct: 191 SRVLEKRSSLIAVYDDFGAKKDRMRSVEQLTLIGFKNGERNL-AVAAASIVSRAEFLNWI 249 Query: 165 HKKYPDYGFDSHVGYPTAKHQQVIKEK 191 + Y + +G + K + I++ Sbjct: 250 ETRSKFYEMEIPLG-ASNKTIEFIRQF 275 >gi|315169945|gb|EFU13962.1| ribonuclease HIII [Enterococcus faecalis TX1342] Length = 305 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVENL--QVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTQPEGILIDQFTPENN 208 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|242807713|ref|XP_002485012.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500] gi|218715637|gb|EED15059.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500] Length = 386 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 77/259 (29%), Gaps = 72/259 (27%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYE 73 K V G+DE GRG + GP+V +A L + +DSK ++ R +L + Sbjct: 80 NKPTECVLGVDEAGRGPVLGPMVYSAFYLPKDLEQSLLTQEHSFDDSKVLTPVVRAQLMQ 139 Query: 74 KIT-------SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 I S ++ S + I + +A + + Sbjct: 140 SICTPGQSLHDSCGWAVKLLSARDISAGMMRPGMGIYNLNAQAMDATVEIIRGVLNDKHI 199 Query: 127 EDLPCQAFAV----------------------IKGDSISLSIAAASIIAKVTRD-RLMRI 163 + K DS+ ++AAS++AKVTRD L Sbjct: 200 NVTEIYIDTIGNPATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAKVTRDVALESC 259 Query: 164 AHKKY----------------------------PDYGFDSHVGYPTA-KHQQVIKE---- 190 Y + G+ GYP+ K +++ Sbjct: 260 YRAFYQEPSQKTVDGDTNMMESSETIPPSVSKVEELGW--GSGYPSDSKCVNWLRQNMDS 317 Query: 191 -KGPSCIHRLTFRPLRNLS 208 G R ++ + + Sbjct: 318 VFGWGNECRFSWGTAKEML 336 >gi|315027498|gb|EFT39430.1| ribonuclease HIII [Enterococcus faecalis TX2137] Length = 305 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|257086614|ref|ZP_05580975.1| ribonuclease HIII [Enterococcus faecalis D6] gi|256994644|gb|EEU81946.1| ribonuclease HIII [Enterococcus faecalis D6] Length = 306 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 269 Query: 181 TA 182 + Sbjct: 270 SK 271 >gi|227518526|ref|ZP_03948575.1| ribonuclease HIII [Enterococcus faecalis TX0104] gi|227074008|gb|EEI11971.1| ribonuclease HIII [Enterococcus faecalis TX0104] Length = 305 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|257085473|ref|ZP_05579834.1| ribonuclease HIII [Enterococcus faecalis Fly1] gi|256993503|gb|EEU80805.1| ribonuclease HIII [Enterococcus faecalis Fly1] Length = 306 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 269 Query: 181 TA 182 + Sbjct: 270 SK 271 >gi|255976061|ref|ZP_05426647.1| ribonuclease HIII [Enterococcus faecalis T2] gi|255968933|gb|EET99555.1| ribonuclease HIII [Enterococcus faecalis T2] Length = 306 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKAALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 269 Query: 181 TA 182 + Sbjct: 270 SK 271 >gi|295112808|emb|CBL31445.1| ribonuclease HIII [Enterococcus sp. 7L76] gi|315145573|gb|EFT89589.1| ribonuclease HIII [Enterococcus faecalis TX2141] gi|315160341|gb|EFU04358.1| ribonuclease HIII [Enterococcus faecalis TX0645] Length = 305 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|256965338|ref|ZP_05569509.1| ribonuclease HIII [Enterococcus faecalis HIP11704] gi|257089671|ref|ZP_05584032.1| ribonuclease HIII [Enterococcus faecalis CH188] gi|256955834|gb|EEU72466.1| ribonuclease HIII [Enterococcus faecalis HIP11704] gi|256998483|gb|EEU85003.1| ribonuclease HIII [Enterococcus faecalis CH188] Length = 306 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 269 Query: 181 TA 182 + Sbjct: 270 SK 271 >gi|315174353|gb|EFU18370.1| ribonuclease HIII [Enterococcus faecalis TX1346] Length = 305 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|307279081|ref|ZP_07560139.1| ribonuclease HIII [Enterococcus faecalis TX0860] gi|306504206|gb|EFM73418.1| ribonuclease HIII [Enterococcus faecalis TX0860] Length = 305 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKAALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|257419087|ref|ZP_05596081.1| ribonuclease HIII [Enterococcus faecalis T11] gi|257160915|gb|EEU90875.1| ribonuclease HIII [Enterococcus faecalis T11] Length = 306 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 269 Query: 181 TA 182 + Sbjct: 270 SK 271 >gi|256962140|ref|ZP_05566311.1| ribonuclease HIII [Enterococcus faecalis Merz96] gi|256952636|gb|EEU69268.1| ribonuclease HIII [Enterococcus faecalis Merz96] Length = 306 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 269 Query: 181 TA 182 + Sbjct: 270 SK 271 >gi|256618846|ref|ZP_05475692.1| ribonuclease HIII [Enterococcus faecalis ATCC 4200] gi|256598373|gb|EEU17549.1| ribonuclease HIII [Enterococcus faecalis ATCC 4200] Length = 306 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 269 Query: 181 TA 182 + Sbjct: 270 SK 271 >gi|293383165|ref|ZP_06629082.1| ribonuclease HIII [Enterococcus faecalis R712] gi|293387681|ref|ZP_06632226.1| ribonuclease HIII [Enterococcus faecalis S613] gi|312899345|ref|ZP_07758678.1| ribonuclease HIII [Enterococcus faecalis TX0470] gi|312907246|ref|ZP_07766237.1| ribonuclease HIII [Enterococcus faecalis DAPTO 512] gi|312909864|ref|ZP_07768712.1| ribonuclease HIII [Enterococcus faecalis DAPTO 516] gi|291079504|gb|EFE16868.1| ribonuclease HIII [Enterococcus faecalis R712] gi|291082870|gb|EFE19833.1| ribonuclease HIII [Enterococcus faecalis S613] gi|310626274|gb|EFQ09557.1| ribonuclease HIII [Enterococcus faecalis DAPTO 512] gi|311289822|gb|EFQ68378.1| ribonuclease HIII [Enterococcus faecalis DAPTO 516] gi|311293496|gb|EFQ72052.1| ribonuclease HIII [Enterococcus faecalis TX0470] gi|327534888|gb|AEA93722.1| ribonuclease H [Enterococcus faecalis OG1RF] Length = 305 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|257415885|ref|ZP_05592879.1| ribonuclease HIII [Enterococcus faecalis AR01/DG] gi|257157713|gb|EEU87673.1| ribonuclease HIII [Enterococcus faecalis ARO1/DG] Length = 306 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 269 Query: 181 TA 182 + Sbjct: 270 SK 271 >gi|315151447|gb|EFT95463.1| ribonuclease HIII [Enterococcus faecalis TX0012] Length = 305 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNTVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|307273446|ref|ZP_07554691.1| ribonuclease HIII [Enterococcus faecalis TX0855] gi|307288434|ref|ZP_07568422.1| ribonuclease HIII [Enterococcus faecalis TX0109] gi|312904016|ref|ZP_07763184.1| ribonuclease HIII [Enterococcus faecalis TX0635] gi|306500605|gb|EFM69934.1| ribonuclease HIII [Enterococcus faecalis TX0109] gi|306509973|gb|EFM78998.1| ribonuclease HIII [Enterococcus faecalis TX0855] gi|310632492|gb|EFQ15775.1| ribonuclease HIII [Enterococcus faecalis TX0635] gi|315147746|gb|EFT91762.1| ribonuclease HIII [Enterococcus faecalis TX4244] gi|315165480|gb|EFU09497.1| ribonuclease HIII [Enterococcus faecalis TX1302] gi|315578363|gb|EFU90554.1| ribonuclease HIII [Enterococcus faecalis TX0630] Length = 305 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|29375836|ref|NP_814990.1| ribonuclease HIII [Enterococcus faecalis V583] gi|227553052|ref|ZP_03983101.1| ribonuclease HIII [Enterococcus faecalis HH22] gi|81585389|sp|Q835V5|RNH3_ENTFA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|29343298|gb|AAO81060.1| ribonuclease HIII [Enterococcus faecalis V583] gi|227177795|gb|EEI58767.1| ribonuclease HIII [Enterococcus faecalis HH22] gi|315575679|gb|EFU87870.1| ribonuclease HIII [Enterococcus faecalis TX0309B] gi|315579877|gb|EFU92068.1| ribonuclease HIII [Enterococcus faecalis TX0309A] Length = 305 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKSLGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 208 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|310794509|gb|EFQ29970.1| ribonuclease HII [Glomerella graminicola M1.001] Length = 344 Score = 61.9 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 45/230 (19%) Query: 24 WPVA-GIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKIT 76 PV G+DE GRG + GP+V L + DSK ++ R +L + Sbjct: 65 TPVCLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMAALC 124 Query: 77 S-------SAIISISSASHQYIDKHNIHKATLDAIYHAVE-------------------- 109 + S +IS+ S + I + + Sbjct: 125 TAGSDLAESCGFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNIQEI 184 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK-KY 168 + + + A + + K DS+ ++AAS+ AKVTRD + + +K + Sbjct: 185 YVDTVGQPAAYQAKLQRFFPATKITVAKKADSLYPCVSAASVCAKVTRDAALEVLYKARA 244 Query: 169 P----DYGFDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 P + G GYP+ + +K G R ++ +++ Sbjct: 245 PESVVEEGMAWGSGYPSDGRCVSWMKSNMHPVFGWGPECRFSWGTAKDML 294 >gi|256762264|ref|ZP_05502844.1| ribonuclease HIII [Enterococcus faecalis T3] gi|256683515|gb|EEU23210.1| ribonuclease HIII [Enterococcus faecalis T3] Length = 306 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLAHVIKE 149 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVE--NLQVIPRSALIDGR 123 + + ++ ++A + ++ + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPENN 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K ++ A + + ++R + K+ + GF G Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 269 Query: 181 TA 182 + Sbjct: 270 SK 271 >gi|229550247|ref|ZP_04438972.1| ribonuclease HIII [Enterococcus faecalis ATCC 29200] gi|300859668|ref|ZP_07105756.1| ribonuclease HIII [Enterococcus faecalis TUSoD Ef11] gi|307277609|ref|ZP_07558701.1| ribonuclease HIII [Enterococcus faecalis TX2134] gi|312952263|ref|ZP_07771138.1| ribonuclease HIII [Enterococcus faecalis TX0102] gi|229304685|gb|EEN70681.1| ribonuclease HIII [Enterococcus faecalis ATCC 29200] gi|300850486|gb|EFK78235.1| ribonuclease HIII [Enterococcus faecalis TUSoD Ef11] gi|306505874|gb|EFM75052.1| ribonuclease HIII [Enterococcus faecalis TX2134] gi|310629647|gb|EFQ12930.1| ribonuclease HIII [Enterococcus faecalis TX0102] gi|315153226|gb|EFT97242.1| ribonuclease HIII [Enterococcus faecalis TX0031] gi|315155995|gb|EFU00012.1| ribonuclease HIII [Enterococcus faecalis TX0043] gi|315157833|gb|EFU01850.1| ribonuclease HIII [Enterococcus faecalis TX0312] gi|315166764|gb|EFU10781.1| ribonuclease HIII [Enterococcus faecalis TX1341] Length = 305 Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 89 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 148 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 + + ++ ++A + Sbjct: 149 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPEKN 208 Query: 126 PEDLPCQAFAVIKGDSISLSIA-----AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + ++ A + + ++R + K+ + GF G Sbjct: 209 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 268 Query: 181 TA 182 + Sbjct: 269 SK 270 >gi|255973022|ref|ZP_05423608.1| ribonuclease HIII [Enterococcus faecalis T1] gi|257422845|ref|ZP_05599835.1| ribonuclease HIII [Enterococcus faecalis X98] gi|255964040|gb|EET96516.1| ribonuclease HIII [Enterococcus faecalis T1] gi|257164669|gb|EEU94629.1| ribonuclease HIII [Enterococcus faecalis X98] Length = 306 Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 21/182 (11%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITS 77 W V G DEVG G+ GPV V A +D + I G+ DSK+++ + +L I Sbjct: 90 GNWSVIGSDEVGNGSYFGPVTVCAAYVDKSMISKLKALGVRDSKELTDPQIIQLSHVIKE 149 Query: 78 SAIISISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 + + ++ ++A + Sbjct: 150 LIPYKLLIVEPKKYNEIQPNYNAVHMKVALHNQAIYLLLQELAPTKPEGILIDQFTPEKN 209 Query: 126 PEDLPCQAFAVIKGDSISLSIA-----AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + ++ A + + ++R + K+ + GF G Sbjct: 210 YRKYVRNEKNQVTEKLFFVTKGEQYHVAVAAASIISRAAFLEELDKESAELGFSVPSGAG 269 Query: 181 TA 182 + Sbjct: 270 SK 271 >gi|169335211|ref|ZP_02862404.1| hypothetical protein ANASTE_01619 [Anaerofustis stercorihominis DSM 17244] gi|169257949|gb|EDS71915.1| hypothetical protein ANASTE_01619 [Anaerofustis stercorihominis DSM 17244] Length = 304 Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 30/224 (13%) Query: 11 HFELEA-MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISH 65 F+ E + P+ G DEVG+G P++V ++ L+ N G+ DSK +S Sbjct: 84 DFDAEKNQLYPIMNPPLLGSDEVGKGDFYAPIIVGSVYLEKNEYDILKTLGVRDSKDLSD 143 Query: 66 KKREELYEKI----TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALID 121 + +L +I + +I+ I + + + K + + A H V + Sbjct: 144 DRIIKLASEIKKVTNNYSILRIGQSKYNELYKKIGNINAILAWAHVTNIKNVYKKQHFKK 203 Query: 122 GRSIPEDLPCQAFA---VIKGDSISLSIA----AASIIAKVTRDRLMRIAHKKYPDYGFD 174 Q + + I A A + + + RD L+ Y FD Sbjct: 204 ALVDKFGREEQIRNGLKELNLEMIFKPKAEQNIAVAAASILARDALLTTIKNMNKHYDFD 263 Query: 175 SHVGY----PTAKHQQVIKEKG------PSCIHRLTFRPLRNLS 208 +G T ++ +K+ G +H F+ ++N+ Sbjct: 264 FPLGANSIVITKG-KEFVKKFGEEELNNVCKMH---FKTVQNIL 303 >gi|171920172|ref|ZP_02931561.1| ribonuclease HIII [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701730|ref|ZP_02971421.1| ribonuclease HIII [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902547|gb|EDT48836.1| ribonuclease HIII [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186700997|gb|EDU19279.1| ribonuclease HIII [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 316 Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 4/107 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 + G DEVG G L G +VV A+ L ++ I DSKK++ ++ +E+Y++I + Sbjct: 101 QVIIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQI 160 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +I S + + ++ + + + SI Sbjct: 161 SYTIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIF 207 >gi|13357958|ref|NP_078232.1| ribonuclease HII [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761950|ref|YP_001752480.1| ribonuclease HIII [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508540|ref|ZP_02958062.1| ribonuclease HIII [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|11387109|sp|Q9PQ93|RNH3_UREPA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|189043679|sp|B1AJ36|RNH3_UREP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|11357021|pir||C82896 ribonuclease HII UU397 [imported] - Ureaplasma urealyticum gi|6899383|gb|AAF30807.1|AE002137_6 ribonuclease HII [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827527|gb|ACA32789.1| ribonuclease HIII [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675978|gb|EDT87883.1| ribonuclease HIII [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 316 Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 4/107 (3%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 + G DEVG G L G +VV A+ L ++ I DSKK++ ++ +E+Y++I + Sbjct: 101 QVIIGSDEVGVGDLFGGIVVCAVSLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQI 160 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 +I S + + ++ + + + SI Sbjct: 161 SYTIVSYNPKEYNELIKEYNNAHILKTILHYKALQSEIHKHAKYSIF 207 >gi|148673842|gb|EDL05789.1| mCG129830, isoform CRA_b [Mus musculus] Length = 142 Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 36/171 (21%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAII 81 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 1 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 60 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDS 141 + S + S+ + ++ + Sbjct: 61 ---------------------------VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTA 93 Query: 142 ISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKEK 191 L A VT+ + + DYG GYP K + +++ Sbjct: 94 AGLIQYALDQNVNVTQWQFVENLQDLDSDYG----SGYPNDPKTKAWLRKH 140 >gi|294654510|ref|XP_456567.2| DEHA2A05632p [Debaryomyces hansenii CBS767] gi|199428939|emb|CAG84523.2| DEHA2A05632p [Debaryomyces hansenii] Length = 375 Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 47/227 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAI-----ILDPNNIPFGINDSKKISHKKREELYEKI---- 75 V G+DE GRG + GP+V +G DSK + KR +L++ I Sbjct: 88 VVLGVDEAGRGPVLGPMVYGIAYSLESYSKDLQTKYGFADSKTLKDDKRRQLFQMIENED 147 Query: 76 ---TSSAIISISSASHQYIDKHN------------IHKATLDAIYHAVE----------- 109 + ++ + + I +A I + Sbjct: 148 HELHGHVGWATTTMTAKDISSGMLQTVLGKGSYNLNEQAHDTTIQLIKQVLAKGVNVTKV 207 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + A + K DSI ++ AS++AKVTRD + + P Sbjct: 208 FVDTVGPPASYQAKLSKIFPTVAITVAKKADSIYPIVSTASVVAKVTRDLNLHFYNIHLP 267 Query: 170 DYGFDSH---VGYPT-AKHQQVI-----KEKGPS-CIHRLTFRPLRN 206 +H GYP+ + + + G + R +++ ++ Sbjct: 268 L--IHNHALGSGYPSDPNTSKWLHANVDRVFGWCFGLVRFSWQTSKD 312 >gi|71024097|ref|XP_762278.1| hypothetical protein UM06131.1 [Ustilago maydis 521] gi|46101780|gb|EAK87013.1| hypothetical protein UM06131.1 [Ustilago maydis 521] Length = 551 Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 29/168 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREE-LYEKITSSAI 80 V G+DE GRG + GP+V + G DSK ++ ++R+ L I ++ Sbjct: 90 VLGVDEAGRGPVLGPLVYGIAYCPVSYQDDLKQIGFADSKALTAERRDSLLSALIDQNSH 149 Query: 81 --ISISSASHQYIDKHNIH----------------------KATLDAIYHAVENLQVIPR 116 ++ S Q I + ++ +D V+ + Sbjct: 150 LGWAVRVMSPQDISAGMLRRRPINLNAQSSQATVSLIAGVLESGVDLTEIYVDTVGDPKS 209 Query: 117 SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA 164 + + P + K D+I + AASI AKVTRDR + Sbjct: 210 YSKLLSSYFPRHSHIKWTVTSKADAIYPIVGAASIAAKVTRDRCVDAW 257 >gi|260946247|ref|XP_002617421.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720] gi|238849275|gb|EEQ38739.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720] Length = 345 Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 49/228 (21%) Query: 25 PVAGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKKREELYEKI---- 75 V G+DE GRG + GP+V D +G DSK + R+EL++ I Sbjct: 72 VVLGVDEAGRGPVLGPMVYGISYCLRDYQDHLKKKYGFADSKTLKDSTRQELFQLIDNEK 131 Query: 76 ---TSSAIISISSASHQYIDKHNIHKATLDAIYH-----------------------AVE 109 + + + + + I + A Y+ Sbjct: 132 HELHKNVGWATCTMTAKDISNGMLRSALGAGSYNLNEQAHDTTIQLIKDVLLSGVNVREI 191 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + + K DSI ++ AS++AKVTRD ++ ++ Sbjct: 192 FVDTVGPPVSYQAKLKKHFPSIDITVTKKADSIYPIVSTASVVAKVTRDLNLQWYNENVE 251 Query: 170 D-YGFDSHVGYPT-AKHQQVIK---------EKGPSCIHRLTFRPLRN 206 + G GYP+ + + + G + R +++ ++ Sbjct: 252 NLIGKCLGSGYPSDPNTSKWLTSNVDKVFGWDFG---LIRFSWQTAKD 296 >gi|213857937|ref|ZP_03384908.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 44 Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 20/34 (58%), Positives = 23/34 (67%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN 58 VAG+DEVGRG L G VV AA+ILDP G+ Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLE 44 >gi|311031392|ref|ZP_07709482.1| ribonuclease HIII [Bacillus sp. m3-13] Length = 318 Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V A + + G+ DSK ++ +K + + I Sbjct: 104 VIGSDEVGTGDYFGPITVCAAYVKKEQMAMLKELGVQDSKALNDEKIVRIAKAILPHVPY 163 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS----------------- 124 S+ ++ ++ + I + N + I Sbjct: 164 SLLVLHNEKYNELQQSGMSQGKIKALLHNKALQHVLDKIAPEKPDAILIDQFAESGIYYR 223 Query: 125 ----IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + K + + LS+AAASIIA R ++ K G G Sbjct: 224 HVAQQKNIVRENVYFHTKAEGLHLSVAAASIIA---RYSFLKEMDKLSELAGITIPKGAG 280 Query: 181 TAKHQQV---IKEKG 192 + I++ G Sbjct: 281 SKVDAAAARVIEKHG 295 >gi|284048370|ref|YP_003398709.1| ribonuclease HIII [Acidaminococcus fermentans DSM 20731] gi|283952591|gb|ADB47394.1| ribonuclease HIII [Acidaminococcus fermentans DSM 20731] Length = 317 Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 25/191 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 G DE G+G GP+ VAA+ LD +GI DSK ++ K L EKI +A Sbjct: 109 CGSDESGKGDYFGPLAVAAVCLDLAAARQYAAWGICDSKALTDGKIRLLAEKIRQTARAH 168 Query: 83 ISSASHQYIDKHNIHK--ATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGD 140 + A + H + + + +I F Sbjct: 169 TVLVLKPRFYNQRYAQLKARKQNLNHLLASGHIHALGRVIQQVPECRFALVDQFTRHNAI 228 Query: 141 SISLSI----------------AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP---T 181 + +L A + + + RD + + + GF G T Sbjct: 229 ASTLETGFPGLKVYQQPKGEADMAVAAASILARDAFVEVMDQLSAQAGFPLPKGGGDQAT 288 Query: 182 AKHQQVIKEKG 192 A +++++E+G Sbjct: 289 AAARKLVREQG 299 >gi|212538023|ref|XP_002149167.1| ribonuclease HI large subunit [Penicillium marneffei ATCC 18224] gi|210068909|gb|EEA23000.1| ribonuclease HI large subunit [Penicillium marneffei ATCC 18224] Length = 368 Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 82/255 (32%), Gaps = 68/255 (26%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYE 73 K V G+DE GRG + GP+V +A L + + +DSK ++ R L + Sbjct: 66 NKPTECVLGVDEAGRGPVLGPMVYSAFYLPKHLERPLLTEEYSFDDSKVLTPVVRARLMQ 125 Query: 74 KIT-------SSAIISISSASHQYIDKHNI-------------HKATLDAIYHAVENLQV 113 I S ++ S + I + AT++ I + + Sbjct: 126 SICTPGASLHDSCGWAVKLLSARDISAGMMRPSTGVYNLNAQAMDATIEIIRGVLNEKHI 185 Query: 114 IPRSALIDGRSIPEDLPCQ---------AFAVIKGDSISLSIAAASIIAKVTRD-RLMRI 163 ID P + K DS+ ++AAS++AKVTRD L Sbjct: 186 NVTEVYIDTIGNPATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAKVTRDVALESC 245 Query: 164 AHKKYPDY------------------------GFDSHVGYPTA-KHQQVIKE-----KGP 193 Y G+ GYP+ K +++ G Sbjct: 246 YQAFYQQEPSQDVEDTDMKDSETTPATKKEAAGW--GSGYPSDSKCVNWLRQNMDSVFGW 303 Query: 194 SCIHRLTFRPLRNLS 208 R ++ + + Sbjct: 304 GNECRFSWGTAKEML 318 >gi|326472233|gb|EGD96242.1| ribonuclease H2 subunit A [Trichophyton tonsurans CBS 112818] Length = 361 Score = 61.2 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 82/258 (31%), Gaps = 62/258 (24%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISH 65 F E + + V GIDE GRG + GP+V +A L + + +DSK ++ Sbjct: 55 FSTEEK-KAEPTPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTP 113 Query: 66 KKREELY-------EKITSSAIISISSASHQYIDKHNIHKAT------------------ 100 + R L + S ++ S + I + + Sbjct: 114 EVRSNLMRSLCTKGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEII 173 Query: 101 -----LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155 I + I + R + + K DS+ ++AAS+ AKV Sbjct: 174 RGVVETQRIDVKEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKV 233 Query: 156 TRDR-----LMRIAHKKYPD----YGFDS----------HVGYPTA-KHQQVIKE----- 190 TRD +++ G D GYP+ K +K+ Sbjct: 234 TRDAALEACYESWLNQREKQKTLATGEDKTATAEEILTWGSGYPSDGKCVGWLKKDMNRL 293 Query: 191 KGPSCIHRLTFRPLRNLS 208 G R ++ + L Sbjct: 294 FGWGAECRFSWGTSKELL 311 >gi|260584114|ref|ZP_05851862.1| ribonuclease HIII [Granulicatella elegans ATCC 700633] gi|260158740|gb|EEW93808.1| ribonuclease HIII [Granulicatella elegans ATCC 700633] Length = 304 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 27/179 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ VA + N G+ DSK ++ + +E+ KI Sbjct: 89 WGVIGSDEVGTGSYFGPLTVACAFVPENLIKELQILGVKDSKILTDSQIQEIVPKIKELV 148 Query: 80 IISISSASHQYI----------------DKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + + + I + ++ + + + + Sbjct: 149 PYKLLTLWPEKYNEVQQTKNLNEMKALLHNQAIKRLYQQINADLLQAVLIDEFCSPSNYY 208 Query: 124 SIPEDLPCQAFAVIK----GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 D A+ G+S +++AAAS+IA RD + +YG+ G Sbjct: 209 RYLGDQSAPLKAITYFKTKGESHHIAVAAASMIA---RDAFLEGLKTLSKEYGYPLLSG 264 >gi|225155691|ref|ZP_03724179.1| ribonuclease HIII [Opitutaceae bacterium TAV2] gi|224803485|gb|EEG21720.1| ribonuclease HIII [Opitutaceae bacterium TAV2] Length = 356 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 76/221 (34%), Gaps = 44/221 (19%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKK 67 + ++ P AG+DE G+G GPVV A +I + + G+ DSKKI+ + Sbjct: 93 LGYDEVLHPDWFEPHAGLDESGKGDFFGPVVAATVIAEKSAIEAWRKAGVQDSKKITENR 152 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EL I + + ++ + + K+N A A + + Q G Sbjct: 153 ILELDRLIRETPGV-VARTLYCGMPKYNELMARPRASLNKLLAWQHAKALLQALGEKPVH 211 Query: 128 DLPCQAFAVIKG-------------------------------DSISLSIAAASIIAKVT 156 F+ +AAASI+A+ Sbjct: 212 WGLLDQFSEQPLVQRELKRLASPPPPPAPALLPPGFDLRMRTKAEEDPVVAAASIVARAE 271 Query: 157 RDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQVIKEKGP 193 R+MR K++ G G T H ++I++ G Sbjct: 272 YVRIMRELSKRF---GAPLQKGASALVKTQAH-EIIRKFGV 308 >gi|81428005|ref|YP_395004.1| ribonuclease HIII [Lactobacillus sakei subsp. sakei 23K] gi|78609646|emb|CAI54692.1| Ribonuclease HIII (RNase HIII) [Lactobacillus sakei subsp. sakei 23K] Length = 305 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 13/94 (13%) Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKIS 64 P F W V G DEVG G+ GP+ +AA+ + N G+ DSK ++ Sbjct: 84 PPDFA---------NWSVIGSDEVGNGSYFGPLTIAAVYVSQENLSFVRNLGVADSKTLT 134 Query: 65 HKKREELYEKITSSAIISISSASHQYIDKHNIHK 98 + +++ K+ + I + Q ++ + Sbjct: 135 DAQIDQMAIKMMTKLPYHIVNIMPQKYNQVHEQM 168 >gi|223936443|ref|ZP_03628355.1| ribonuclease HIII [bacterium Ellin514] gi|223894961|gb|EEF61410.1| ribonuclease HIII [bacterium Ellin514] Length = 329 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 48/232 (20%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKK 67 E ++ + + P G+DE G+G GP+ VA + ++ + GI DSK IS K Sbjct: 80 LGYEEVLNPELLAPRLGVDESGKGDFFGPLCVAGVYVNESVVRAWKEAGIRDSKNISSDK 139 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 + ++ +++ + +N A + ++ + L+ + + + Sbjct: 140 KIRELAELIRETPGCVTTVVPIGNEAYNRLYAKMRSVNTLLAWGHARVIENLMGRQQMMK 199 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVT---------------------RDRLMRIAHK 166 P +A + S A + + RD + Sbjct: 200 PPPIRAISDQFAASKDTVAKALMNLGRQVELVQRHKAEEDIAVAAASILARDEFVSRLGT 259 Query: 167 KYPDYGFDSHVG---------------YPT-------AKH-QQVIKEKGPSC 195 YG G Y + H + ++ +G Sbjct: 260 LEKQYGMGFPKGASVLVDKAAKEFVSRYGSEELTKVAKMHFRTALRAQGLPE 311 >gi|326483287|gb|EGE07297.1| ribonuclease HI large subunit [Trichophyton equinum CBS 127.97] Length = 323 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 82/258 (31%), Gaps = 62/258 (24%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISH 65 F E + + V GIDE GRG + GP+V +A L + + +DSK ++ Sbjct: 55 FSTEEK-KAEPTPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTP 113 Query: 66 KKREELY-------EKITSSAIISISSASHQYIDKHNIHKAT------------------ 100 + R L + S ++ S + I + + Sbjct: 114 EVRSNLMRSLCTKGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEII 173 Query: 101 -----LDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155 I + I + R + + K DS+ ++AAS+ AKV Sbjct: 174 RGVVETQRIDVKEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKV 233 Query: 156 TRDR-----LMRIAHKKYPD----YGFDS----------HVGYPTA-KHQQVIKE----- 190 TRD +++ G D GYP+ K +K+ Sbjct: 234 TRDAALEACYESWLNQREKQKTLATGEDKTATAEEILTWGSGYPSDGKCVGWLKKDMNRL 293 Query: 191 KGPSCIHRLTFRPLRNLS 208 G R ++ + L Sbjct: 294 FGWGAECRFSWGTSKELL 311 >gi|156375344|ref|XP_001630041.1| predicted protein [Nematostella vectensis] gi|156217054|gb|EDO37978.1| predicted protein [Nematostella vectensis] Length = 569 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 27/158 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-- 80 GIDE GRG + GP+V + G DSK ++ ++RE L+++++ + Sbjct: 31 VGIDEAGRGPVLGPMVYGICYCPLSKAEELKTTGFADSKTLTEEEREALFKELSENCHGY 90 Query: 81 --ISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIPRSAL 119 I + ++ + + + + + + Sbjct: 91 MGWVIDILTPNFLSNCMLQRTKCSLNEVSHNSAIGLIRLLLDSGVKVQEVYVDTVGPAEK 150 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157 + + K D+ ++AAS+ AK T Sbjct: 151 YQDKLQKIFPEQKIVVTPKADAKFPVVSAASVCAKGTH 188 >gi|298694427|gb|ADI97649.1| probable ribonuclease HIII [Staphylococcus aureus subsp. aureus ED133] Length = 318 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 25/207 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 E + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 FEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210 Query: 125 IPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDYG 172 I + + ++ I L A ++ + ++R + + + Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNIN 270 Query: 173 FDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 271 MTIPKGAGAKVDVIAAKIIKKYGISRL 297 >gi|317137770|ref|XP_001727941.2| ribonuclease H2 subunit A [Aspergillus oryzae RIB40] Length = 351 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 81/238 (34%), Gaps = 56/238 (23%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKITS- 77 V G+DE GRG + GP+V +A L + + NDSK ++ R L + + Sbjct: 67 FVLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCTP 126 Query: 78 ------SAIISISSASHQYIDK-HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 S + S + I A + + + V +++GR + Sbjct: 127 GTPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREV 186 Query: 131 C---------------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK--- 166 + K DS+ ++AAS+ AKVTRD + + H+ Sbjct: 187 YIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHEDIV 246 Query: 167 KYPDYG----------FDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 K + + GYP+ K ++ G R ++ + + Sbjct: 247 KAQQFDDPSQATSTESW--GSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEML 302 >gi|83770969|dbj|BAE61102.1| unnamed protein product [Aspergillus oryzae] Length = 363 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 81/238 (34%), Gaps = 56/238 (23%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKITS- 77 V G+DE GRG + GP+V +A L + + NDSK ++ R L + + Sbjct: 79 FVLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCTP 138 Query: 78 ------SAIISISSASHQYIDK-HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 S + S + I A + + + V +++GR + Sbjct: 139 GTPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREV 198 Query: 131 C---------------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK--- 166 + K DS+ ++AAS+ AKVTRD + + H+ Sbjct: 199 YIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHEDIV 258 Query: 167 KYPDYG----------FDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 K + + GYP+ K ++ G R ++ + + Sbjct: 259 KAQQFDDPSQATSTESW--GSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEML 314 >gi|46107902|ref|XP_381010.1| hypothetical protein FG00834.1 [Gibberella zeae PH-1] Length = 338 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 72/225 (32%), Gaps = 44/225 (19%) Query: 28 GIDEVGRGALAGPVVVAAIILDPN------NIPFGINDSKKISHKKREELYEKITS---- 77 G+DE GRG + GP+V L + +DSK + R +L + + Sbjct: 63 GVDEAGRGPVLGPMVYGVFFLPISLSDSLLRETHHFDDSKVLKPAVRSDLMRILCTPGSD 122 Query: 78 ---SAIISISSASHQYI-DKHNIHKATLDAIYHA------------------VENLQVIP 115 S + +S S + I A + I Sbjct: 123 LYESCGWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQEIFVDTIG 182 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA------HKKYP 169 + A + + K DS+ ++AAS+ AKVTRD + + ++ Sbjct: 183 QPAAYQAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAKVTRDAALEVLFEARADGEEKG 242 Query: 170 DYGFDSHVGYPTAKH-QQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP+ + +K G R ++ +++ Sbjct: 243 GEAMAWGSGYPSDGNCVSWMKNNMHPVFGWGPECRFSWGTAKDML 287 >gi|315044861|ref|XP_003171806.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893] gi|311344149|gb|EFR03352.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893] Length = 362 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 62/245 (25%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELY------- 72 V GIDE GRG + GP+V +A L + + +DSK ++ + R L Sbjct: 68 VLGIDEAGRGPVLGPMVYSAFYLPIHLHNSLLADEHHFDDSKVLTPEVRSNLMRSLCTQG 127 Query: 73 EKITSSAIISISSASHQYIDK---------HNIHKATLDAIYHAVE-------------- 109 + +S ++ S + I A + Sbjct: 128 HSLHNSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDVKEV 187 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR-----LMRIA 164 + I + R + + K DS+ ++AAS+ AKVTRD Sbjct: 188 YVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESWV 247 Query: 165 HKKYPDYGFDS---------------HVGYPTA-KHQQVIKE-----KGPSCIHRLTFRP 203 +++ +S GYP+ K +K+ G R ++ Sbjct: 248 NQRKRKRSLESGGGEAVTAEEETLSWGSGYPSDGKCIGWLKKDMNPLFGWGIECRFSWGT 307 Query: 204 LRNLS 208 + L Sbjct: 308 SKELL 312 >gi|302332748|gb|ADL22941.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JKD6159] Length = 312 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 86 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144 Query: 70 ELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 145 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLKKIDSSQLDYIV 204 Query: 125 IPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDYG 172 I + + ++ I L A ++ + ++R + + + Sbjct: 205 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNIN 264 Query: 173 FDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 265 MTIPKGAGAKVDVIAAKIIKKYGISRL 291 >gi|319776859|ref|YP_004136510.1| ribonuclease [Mycoplasma fermentans M64] gi|318037934|gb|ADV34133.1| Ribonuclease [Mycoplasma fermentans M64] Length = 249 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 62/189 (32%), Gaps = 33/189 (17%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 + G+DEVG G GP+ AA+ + + I G+ DSKK+S K+ + + K+ Sbjct: 15 KKLIGVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIV 74 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAV--------------------------ENLQV 113 +I S + + N + Sbjct: 75 KYAIHHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDYVFIDQYSTKSSIERY 134 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 ++ + + K +SISL +A ASIIA RD + K Y Sbjct: 135 YTDLVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYNC 191 Query: 174 DSHVGYPTA 182 G + Sbjct: 192 KFPFGAGSK 200 >gi|308189676|ref|YP_003922607.1| ribonuclease H [Mycoplasma fermentans JER] gi|307624418|gb|ADN68723.1| ribonuclease H [Mycoplasma fermentans JER] Length = 249 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 62/189 (32%), Gaps = 33/189 (17%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 + G+DEVG G GP+ AA+ + + I G+ DSKK+S K+ + + K+ Sbjct: 15 KKLIGVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIV 74 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAV--------------------------ENLQV 113 +I S + + N + Sbjct: 75 KYAIHHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDYVFIDQYSTKSSIERY 134 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 ++ + + K +SISL +A ASIIA RD + K Y Sbjct: 135 YTDLVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYNC 191 Query: 174 DSHVGYPTA 182 G + Sbjct: 192 KFPFGAGSK 200 >gi|238809644|dbj|BAH69434.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 250 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 62/189 (32%), Gaps = 33/189 (17%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 + G+DEVG G GP+ AA+ + + I G+ DSKK+S K+ + + K+ Sbjct: 16 KKLIGVDEVGVGDYFGPLCCAAVFIPQDKIQEVIDLGVKDSKKLSDKQIKMMAYKLKKIV 75 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAV--------------------------ENLQV 113 +I S + + N + Sbjct: 76 KYAIHHLSPKGYNTLNKTYNGNFLKMFTHLSAISSLQEKIGAVDYVFIDQYSTKSSIERY 135 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 ++ + + K +SISL +A ASIIA RD + K Y Sbjct: 136 YTDLVKLNNWADFNQIQGDILLAYKAESISLEVACASIIA---RDYFLYFMQKMNEQYNC 192 Query: 174 DSHVGYPTA 182 G + Sbjct: 193 KFPFGAGSK 201 >gi|302510819|ref|XP_003017361.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371] gi|291180932|gb|EFE36716.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371] Length = 361 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 76/244 (31%), Gaps = 61/244 (25%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELY------- 72 V GIDE GRG + GP+V +A L + + +DSK ++ + R L Sbjct: 68 VLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQS 127 Query: 73 EKITSSAIISISSASHQYIDK---------HNIHKATLDAIYHAVE-------------- 109 + S ++ S + I A + Sbjct: 128 HPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGINVKEV 187 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR-----LMRIA 164 + I + R + + K DS+ ++AAS+ AKVTRD Sbjct: 188 YVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESWL 247 Query: 165 HKKYPDYGFDS--------------HVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPL 204 +++ + GYP+ K +K+ G R ++ Sbjct: 248 NQREKQRTLVTGEDEATTADEILTWGSGYPSDGKCVGWLKKDMNRLFGWGVECRFSWGTS 307 Query: 205 RNLS 208 + L Sbjct: 308 KELL 311 >gi|289547944|ref|YP_003472932.1| ribonuclease HIII [Thermocrinis albus DSM 14484] gi|289181561|gb|ADC88805.1| ribonuclease HIII [Thermocrinis albus DSM 14484] Length = 258 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 7/139 (5%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN----DSKKISHKKREELYEKITSSAI 80 PV G DE G+G + GP+VV ++ P N + D K ++ ++ + + + Sbjct: 75 PVVGCDESGKGDVFGPLVVCCAVVKPENYLKLVQVAPRDGKSLTPQQIAKKFSLMQDLVD 134 Query: 81 ISISSASHQY---IDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 I + + K + + + +V + ++ + + Sbjct: 135 IRCRIMPPEELNALYKDMPNMNRVLTYLYKELLKEVPCQYPIVVDAYASRNPFGPKVTFV 194 Query: 138 KGDSISLSIAAASIIAKVT 156 ++++A ASI A+ Sbjct: 195 PKGEKNIAVACASIAARYH 213 >gi|300175420|emb|CBK20731.2| unnamed protein product [Blastocystis hominis] Length = 539 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIIL----DPNNIPFGINDSKKISHKKREELYEKI 75 + GIDE GRG + GP+V AA + G +DSKK + +R+ + I Sbjct: 450 EVIVGIDEAGRGPVVGPMVYAAAYWAKSKNEEISNLGFDDSKKFTSGQRDGFRKTI 505 >gi|327297598|ref|XP_003233493.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892] gi|326464799|gb|EGD90252.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892] Length = 361 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 74/244 (30%), Gaps = 61/244 (25%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELY------- 72 V GIDE GRG + GP+V +A L + + +DSK ++ + R L Sbjct: 68 VLGIDEAGRGPVLGPMVYSAFYLPVHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLCTQG 127 Query: 73 EKITSSAIISISSASHQYIDK---------HNIHKATLDAIYHAVENLQVIPR------- 116 + S ++ S + I A + V Sbjct: 128 HPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETHGIDVKEV 187 Query: 117 -------SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR-----LMRIA 164 R + + K DS+ ++AAS+ AKVTRD Sbjct: 188 YVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYESWL 247 Query: 165 HKKYPDYGFDS--------------HVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPL 204 +++ + GYP+ K +K+ G R ++ Sbjct: 248 NQREKQRAVATGEDEESTAEEILTWGSGYPSDGKCVGWLKKDMNRLFGWGYECRFSWGTS 307 Query: 205 RNLS 208 + L Sbjct: 308 KELL 311 >gi|183231893|ref|XP_001913636.1| ribonuclease H2 subunit A [Entamoeba histolytica HM-1:IMSS] gi|169802278|gb|EDS89588.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica HM-1:IMSS] Length = 354 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 32/185 (17%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP--FGINDSKKISHKKREELYEKITSSAII--- 81 GIDE GRG + GP+V +A + G +DSK +S RE+L+ I S + Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFTTNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCGFS 76 Query: 82 ----------------------SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 I+ ++ + I I + ++ + + + Sbjct: 77 TRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKYQA 136 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS---H 176 + E Q K D + ++AASI AKVTRD + Y + + Sbjct: 137 MIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLDNW--IYEETNIQTRQVG 194 Query: 177 VGYPT 181 GYP+ Sbjct: 195 CGYPS 199 >gi|323442368|gb|EGA99997.1| ribonuclease HIII [Staphylococcus aureus O46] Length = 318 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210 Query: 125 IPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDYG 172 I + + ++ I L A ++ + ++R + + + Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNIN 270 Query: 173 FDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 271 MTIPKGAGAKVDVIAAKIIKKYGISRL 297 >gi|323440689|gb|EGA98399.1| ribonuclease HIII [Staphylococcus aureus O11] Length = 318 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210 Query: 125 IPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDYG 172 I + + ++ I L A ++ + ++R + + + Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNIN 270 Query: 173 FDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 271 MTIPKGAGAKVDVIAAKIIKKYGISRL 297 >gi|255718283|ref|XP_002555422.1| KLTH0G08976p [Lachancea thermotolerans] gi|238936806|emb|CAR24985.1| KLTH0G08976p [Lachancea thermotolerans] Length = 342 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 42/232 (18%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKRE 69 +R+ + G+DE GRG + GP+V + +DSKK++ R Sbjct: 71 QQIRDSGCAVILGVDEAGRGPVLGPMVYGISYCTREYQDEVLKKRYAFDDSKKLTDPVRR 130 Query: 70 ELYEKITS-------SAIISISSA--------SHQYIDKHNIHKATLDAI---------- 104 +L++++ + A IS+ + + +A I Sbjct: 131 DLFQRMYTGEIDQVGYATTCISACDISSGMLRFPPEKNYNLNEQAHDVTIALIRGVLERG 190 Query: 105 -YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 + + A + + K DS+ ++ AS++AKVTRD L+ + Sbjct: 191 VAVEHVYVDTVGPPATYQRKLEGLFPSIKFTVAKKADSLFCVVSVASVVAKVTRDVLIEL 250 Query: 164 AHKKYPDYGFDSHVGYPT-AKHQQVIKE-----KG-PSCIHRLTFRPLRNLS 208 + PD GYP+ AK ++ G P R +++ + L Sbjct: 251 LRAR-PDEVL--GSGYPSDAKTTAWLRSNRTALFGWPLQTVRFSWQTSQTLL 299 >gi|256847956|ref|ZP_05553400.1| ribonuclease HIII [Lactobacillus coleohominis 101-4-CHN] gi|256715016|gb|EEU29993.1| ribonuclease HIII [Lactobacillus coleohominis 101-4-CHN] Length = 306 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 6/94 (6%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ AA+ +D ++ G+ DSKK+S ++ ++I + Sbjct: 94 VLGSDEVGTGSYFGPLTTAAVFVDQDHLASLRKLGVEDSKKLSDPTIIKIAKQIMAQCPY 153 Query: 82 SISSASHQYIDK--HNIHKATLDAIYHAVENLQV 113 + + Q ++ ++A L AI H +V Sbjct: 154 HVVNVKPQDYNRLIRKYNQAQLKAICHNFVLGKV 187 >gi|326693332|ref|ZP_08230337.1| ribonuclease HIII [Leuconostoc argentinum KCTC 3773] Length = 313 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 4/84 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + + GI DSK ++ K ++ +I ++ Sbjct: 98 WSVLGSDEVGAGAYFGPLTTAAVYVPKDQLAWVRQLGIADSKTLTDAKMRQIAPEIIANL 157 Query: 80 IISISSASHQYIDKHNIHKATLDA 103 + + + ++ Sbjct: 158 PHHVVNLMPEKYNQMQPTNNVNQM 181 >gi|70926382|ref|XP_735739.1| ribonuclease H1 large subunit [Plasmodium chabaudi chabaudi] gi|56509666|emb|CAH81806.1| ribonuclease H1 large subunit, putative [Plasmodium chabaudi chabaudi] Length = 133 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%) Query: 18 VREKNMWPV-AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72 + E V GIDE GRG + GP+V + + I+DSKKIS RE+++ Sbjct: 9 LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKISENDREKMF 68 Query: 73 EKITSS---AIISISSASHQYIDKHN 95 K+ +S + Q I Sbjct: 69 YKLNNSTLPFGWRVHVLMPQDISAKM 94 >gi|85057383|ref|YP_456299.1| ribonuclease HIII [Aster yellows witches'-broom phytoplasma AYWB] gi|84789488|gb|ABC65220.1| ribonuclease HIII [Aster yellows witches'-broom phytoplasma AYWB] Length = 330 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 62/183 (33%), Gaps = 28/183 (15%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEKITS 77 P G DEVG G + GPVVV + L NI F I +SKKIS +K + I Sbjct: 116 YLPSIGSDEVGTGDVFGPVVVCCVYLTAKNIAFLQNLGIIAESKKISDEKIINIAPLIMK 175 Query: 78 SAIISISSASH----QYIDKHNIHKATLDAIYHAV----------------ENLQVIPRS 117 I S Q I + N++K A+ + Sbjct: 176 EVIYSSKIMMPLEYNQIIKQCNLNKIKALMHNEAIKQTVFKAPPNVPVILDQFCFPKNYF 235 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + + ++ K DS S+A AS+IA R + K F + Sbjct: 236 NYLQDQKDQNEVYTNIIFETKADSSYFSVAVASVIA---RYLFLTQIAKLSKQINFKLQL 292 Query: 178 GYP 180 G Sbjct: 293 GAG 295 >gi|322490645|emb|CBZ25907.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103] Length = 316 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 51/224 (22%) Query: 25 PVAGIDEVGRGALAGPVVV-AAII-LDPNNIPFGIN---------------DSKKISHKK 67 V GIDE GRG++ GP+V A+I L ++ + +K+ K Sbjct: 45 LVLGIDEAGRGSVIGPMVYTGAVISLGEHDELVRLCHVADRKMPNVRPRLASLQKLRQLK 104 Query: 68 --R--------EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 R EE+ + ++++ SH+ + A + + Sbjct: 105 TFRSFTVFVSSEEISNTMAGHNGRNLNALSHETAIQIISEATLASAGKLCAAYVDTVGPP 164 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 R + K +S ++AAS++AK RD + + + Sbjct: 165 GTYQARLAGRFPHLRVTVAKKAESKFPIVSAASVVAKTARDAAIEALGE-------NIGS 217 Query: 178 GY-PTAKHQQVIKEKGPSCIH------------RLTFRPLRNLS 208 GY + ++ S +H R ++ P+ L+ Sbjct: 218 GYLIDPRTMAWLR----SPVHRCFAFSHAYDSVRQSWGPVVQLA 257 >gi|282910715|ref|ZP_06318518.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus WBG10049] gi|295427627|ref|ZP_06820259.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591419|ref|ZP_06950057.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MN8] gi|282325320|gb|EFB55629.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus WBG10049] gi|295127985|gb|EFG57619.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576305|gb|EFH95021.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MN8] gi|312438484|gb|ADQ77555.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH60] Length = 329 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 25/208 (12%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 102 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 160 Query: 69 EELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 161 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 220 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDY 171 I + + ++ I L A ++ + ++R + + + Sbjct: 221 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISKNI 280 Query: 172 GFDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK G S + Sbjct: 281 NMTIPKGAGAKVDVIAAKIIKNYGISRL 308 >gi|161777620|ref|YP_416488.2| ribonuclease HIII [Staphylococcus aureus RF122] Length = 312 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 74/207 (35%), Gaps = 25/207 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 86 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144 Query: 70 ELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 EL E++ + S+ + ++ + K AV+N+ S+ +D Sbjct: 145 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAVKNVLEKIDSSQLDYIV 204 Query: 125 IPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDYG 172 I + + ++ I L A ++ + ++R + + + Sbjct: 205 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNIN 264 Query: 173 FDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 265 MTIPKGAGAKVDVIAAKIIKKYGISRL 291 >gi|149235450|ref|XP_001523603.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL YB-4239] gi|146452582|gb|EDK46838.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL YB-4239] Length = 414 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 73/228 (32%), Gaps = 52/228 (22%) Query: 28 GIDEVGRGALAGPVVVAAII-----LDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 G+DE GRG + GP+V L +G DSK+++ KRE L++ + + I + Sbjct: 137 GVDEAGRGPVLGPMVYGIAYSLLSFLKCLQKQYGFADSKQLTGDKRELLFKMMEDTHIEN 196 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-------------------------- 116 S + K + V N + + Sbjct: 197 GLSKHVGWATTTMTAKDISLGMLRLVSNGKGVYNLNEQAHDATIELIRLILSKGVNITAI 256 Query: 117 -------SALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 A + K DSI ++ AS++AKVTRD L ++ Sbjct: 257 YVDTVGPPATYQAKLKKLFPTIDITVTKKADSIYPIVSTASVVAKVTRD-LNLKYANQH- 314 Query: 170 DYGFDSH----VGYPT-AKHQQVIKE-----KGPS-CIHRLTFRPLRN 206 + GYP+ + G R +++ ++ Sbjct: 315 -INLLKNHALGSGYPSDPNTSFWLNHNVDPIFGWCFGFIRFSWQTAKD 361 >gi|82656278|emb|CAI80692.1| probable ribonuclease HIII [Staphylococcus aureus RF122] Length = 318 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 74/207 (35%), Gaps = 25/207 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 EL E++ + S+ + ++ + K AV+N+ S+ +D Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAVKNVLEKIDSSQLDYIV 210 Query: 125 IPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDYG 172 I + + ++ I L A ++ + ++R + + + Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNIN 270 Query: 173 FDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 271 MTIPKGAGAKVDVIAAKIIKKYGISRL 297 >gi|49483303|ref|YP_040527.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA252] gi|257425191|ref|ZP_05601617.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 55/2053] gi|257427854|ref|ZP_05604252.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 65-1322] gi|257430489|ref|ZP_05606871.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 68-397] gi|257433251|ref|ZP_05609609.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus E1410] gi|257436090|ref|ZP_05612137.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M876] gi|282903688|ref|ZP_06311576.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C160] gi|282905457|ref|ZP_06313312.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Btn1260] gi|282913915|ref|ZP_06321702.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M899] gi|282918838|ref|ZP_06326573.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C427] gi|282923960|ref|ZP_06331636.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C101] gi|283957883|ref|ZP_06375334.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus A017934/97] gi|293500950|ref|ZP_06666801.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 58-424] gi|293509907|ref|ZP_06668616.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M809] gi|293526494|ref|ZP_06671179.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M1015] gi|73917851|sp|Q6GHU5|RNH3_STAAR RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|49241432|emb|CAG40116.1| putative ribonuclease [Staphylococcus aureus subsp. aureus MRSA252] gi|257272167|gb|EEV04299.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 55/2053] gi|257274695|gb|EEV06182.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 65-1322] gi|257278617|gb|EEV09236.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 68-397] gi|257281344|gb|EEV11481.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus E1410] gi|257284372|gb|EEV14492.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M876] gi|282313932|gb|EFB44324.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C101] gi|282316648|gb|EFB47022.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C427] gi|282321983|gb|EFB52307.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M899] gi|282330749|gb|EFB60263.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Btn1260] gi|282595306|gb|EFC00270.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus C160] gi|283790032|gb|EFC28849.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus A017934/97] gi|290920566|gb|EFD97629.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M1015] gi|291095955|gb|EFE26216.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 58-424] gi|291467357|gb|EFF09874.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus M809] gi|315193810|gb|EFU24205.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS00] Length = 312 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 25/208 (12%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 85 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 143 Query: 69 EELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 144 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 203 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDY 171 I + + ++ I L A ++ + ++R + + + Sbjct: 204 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISKNI 263 Query: 172 GFDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK G S + Sbjct: 264 NMTIPKGAGAKVDVIAAKIIKNYGISRL 291 >gi|295099552|emb|CBK88641.1| Ribonuclease HIII [Eubacterium cylindroides T2-87] Length = 170 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 4/103 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKK 67 E+ KNM+P AG DEVG G GPVVV+A+I+ N I DSK+I+ +K Sbjct: 55 LSQESSSESKNMFPQAGSDEVGTGDYFGPVVVSAVIVSKENEDVLRNLKIQDSKQINDEK 114 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN 110 L ++I S +I S + + +D Sbjct: 115 IRVLAKEIKSLCPHTILIVSSSKYNSVHKQHNMVDIKCKLHNQ 157 >gi|289803931|ref|ZP_06534560.1| ribonuclease HII [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 37 Score = 59.6 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 19/31 (61%) Query: 176 HVGYPTAKHQQVIKEKGPSCIHRLTFRPLRN 206 H GYPTA H + + + G + HR +F P++ Sbjct: 1 HKGYPTAFHLEKLAQYGATAHHRRSFAPVKR 31 >gi|312379086|gb|EFR25480.1| hypothetical protein AND_09149 [Anopheles darlingi] Length = 346 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 79/233 (33%), Gaps = 57/233 (24%) Query: 28 GIDEVGRGAL---------------------AGPVVVAAIILDPNNIP----FGINDSKK 62 G+DE GRG + GP+V + G DSK+ Sbjct: 51 GVDEAGRGPVLGKRDPEPYSERKMKLFCNPMLGPMVYGIAFCPLSKKDILKSLGFADSKQ 110 Query: 63 ISHKKREELYEKITSSAI------ISISSASHQYIDKHN-------------------IH 97 ++ +KR+++++++ ++ + S I IH Sbjct: 111 LTEEKRDQIFDEMNQKDYATEALGWAVEAISPNTISMSMLRRTKCSLNEVSMNSAIGLIH 170 Query: 98 KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157 A + A + + + + K DS ++AASI AKVTR Sbjct: 171 AAIEAGVNIAEVYVDTVGPPEKYQAKLKDIFPKFKITVAKKADSTYPIVSAASIAAKVTR 230 Query: 158 DRLMRIAH-KKYPDYGFDS-HVGYP----TAKHQQVIKE-KGPSCIHRLTFRP 203 D +++ ++ P+ +S GYP T K + G + R ++ Sbjct: 231 DHALKVWQFRERPNEEENSFGSGYPGDPTTKKFLGEVDLVFGFPRLVRFSWST 283 >gi|283470350|emb|CAQ49561.1| ribonuclease hiii [Staphylococcus aureus subsp. aureus ST398] Length = 318 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 74/208 (35%), Gaps = 25/208 (12%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 91 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 149 Query: 69 EELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 150 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDY 171 I + + ++ I L A ++ + ++R + + + Sbjct: 210 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNI 269 Query: 172 GFDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 270 NMTIPKGAGAKVDVIAAKIIKKYGLSRL 297 >gi|15790853|ref|NP_280677.1| ribonuclease HII [Halobacterium sp. NRC-1] gi|169236599|ref|YP_001689799.1| ribonuclease HII [Halobacterium salinarum R1] gi|74568991|sp|Q9HNR3|RNH2_HALSA RecName: Full=Ribonuclease HII; Short=RNase HII gi|189043604|sp|B0R6T4|RNH2_HALS3 RecName: Full=Ribonuclease HII; Short=RNase HII gi|10581416|gb|AAG20157.1| RNAase H [Halobacterium sp. NRC-1] gi|167727665|emb|CAP14453.1| ribonuclease HII [Halobacterium salinarum R1] Length = 212 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 22/198 (11%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G+DE G+G + G + AA+ DP +P G+ DSK++S +R EL +++ +S + ++ Sbjct: 5 GVDEAGKGPVLGSMFAAAVAGDPAAVPDGVADSKRLSADRRAELDDRVRASMRVGVAEVP 64 Query: 88 ------HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ-------AF 134 + A DA+ V + A Sbjct: 65 VDRIDDPETDMNTLTVAAQADALGRVVADGMAGYVDAGDVNEQRFGRRVANRVAADVAVT 124 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP----TAKHQQV-IK 189 A D +AAASI+AKV RD + + D GYP T + ++ Sbjct: 125 AEHGADDEYDLVAAASIVAKVARDAHVDALAAAFDA---DIGSGYPSDSTTREFLAAYVR 181 Query: 190 EKG-PSCIHRLTFRPLRN 206 E G R +++ R+ Sbjct: 182 EHGELPECARASWQTSRD 199 >gi|154318955|ref|XP_001558795.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10] gi|150856860|gb|EDN32052.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10] Length = 1493 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 81/229 (35%), Gaps = 48/229 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT----- 76 GIDE GRG + GP+V L +DSK ++ R EL EK+ Sbjct: 70 GIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMEKLCTPGSD 129 Query: 77 --SSAIISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIP 115 + ++ S + I + + AT + A++ + + Sbjct: 130 LYTQCGWAVDVMSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDALG 189 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDS 175 + + Q K DS+ ++AAS+ AKVTRD + ++ Y + D Sbjct: 190 NTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALESLYESYMNKDGDQ 249 Query: 176 ----------HVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP+ A+ +K G R ++ +++ Sbjct: 250 KMGGTEEDSWGSGYPSDARATTWLKRNMDPIFGWGSECRFSWGTTKDML 298 >gi|163782002|ref|ZP_02177001.1| hypothetical protein HG1285_17754 [Hydrogenivirga sp. 128-5-R1-1] gi|159882534|gb|EDP76039.1| hypothetical protein HG1285_17754 [Hydrogenivirga sp. 128-5-R1-1] Length = 272 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 66/176 (37%), Gaps = 15/176 (8%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHK-------KR-EELYEKI 75 P+AG DEVG+G L GP+V+ +++P N ++ S K S KR E+L + + Sbjct: 78 GPLAGCDEVGKGDLFGPLVLCCAVVNPENFKKVLSLSPKDSKSMKDDELLKRAEKLKKYV 137 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSA----LIDGRSIPEDLPC 131 I+ + ++ ++ +D Y + V + Sbjct: 138 NRRCIVLMPERFNELYREYGNINRLMDDAYRKLVQSIVRDFRPVRVVIDRYSFRNPFQDM 197 Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 ++ + ++ AS++A R + + + +YG G + + Sbjct: 198 GVVDFLEKGERDVVVSVASMLA---RAKFLEKLRELEDNYGLKLPKGASSEAKRLA 250 >gi|293376244|ref|ZP_06622487.1| ribonuclease HIII [Turicibacter sanguinis PC909] gi|292645136|gb|EFF63203.1| ribonuclease HIII [Turicibacter sanguinis PC909] Length = 308 Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 45/243 (18%) Query: 4 NSIPERPHFELEAMVREKNMWPV--AGIDEVGRGALAGPVVVAAIILDPNN----IPFGI 57 ++ P++ E N+ + G DEVG G GP+VV ++ + GI Sbjct: 72 STTPKKSTLN-EKSTLPSNIAMLSAIGCDEVGTGDYFGPIVVCCASVEKDQIAFLQEMGI 130 Query: 58 NDSKKISHKKREELYEKITSSAIISISSASHQYID------------KHNIHKATLDAIY 105 DSK + + +L +I + ++ + K +H L + Sbjct: 131 KDSKALKDPEICQLAHQIETMIPHQCLVLPNEKYNLMVEKGMNANSIKAYLHNQALLKLT 190 Query: 106 HAVENLQVIPRSALIDGRSIPEDLPCQ-----------AFAVIKGDSISLSIAAASIIAK 154 ++ +L + D + + KG+S+ +++AAASI+A+ Sbjct: 191 TSLPSLPDFIIMDEFVNEAKYYDYLKKLPKQPTIISENLHFIQKGESVHVAVAAASILAR 250 Query: 155 VTRDRLMRIAHKKYPDYGFDSHVGYPTA---KHQQVIKEKG------PSCIHRLTFRPLR 205 + + M+I KK Y F+ G ++ +K G + H F Sbjct: 251 ASFVKYMQIMSKK---YQFELPKGAGAPVDIAGRKFVKLHGKETLQSLTKWH---FANTN 304 Query: 206 NLS 208 + Sbjct: 305 KIL 307 >gi|253731751|ref|ZP_04865916.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724509|gb|EES93238.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 315 Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 25/205 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210 Query: 125 IPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDYG 172 I + + ++ I L A ++ + ++R + + + Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTNMDQISKNIN 270 Query: 173 FDSHVGYPTA-KHQQV--IKEKGPS 194 G IK+ G S Sbjct: 271 MTIPKGAGAKVDVIAAKIIKKYGLS 295 >gi|258423817|ref|ZP_05686703.1| ribonuclease HIII [Staphylococcus aureus A9635] gi|257846049|gb|EEV70077.1| ribonuclease HIII [Staphylococcus aureus A9635] Length = 318 Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 25/207 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR- 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 69 ---EELYEKITSSAIISISSASHQYIDK-HNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 E+L I S + + + K K A++N+ S+ +D Sbjct: 151 DLAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIV 210 Query: 125 IPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDYG 172 I + + ++ I L A ++ + ++R + + + Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNIN 270 Query: 173 FDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 271 MTIPKGAGAKVDVIAAKIIKKYGISRL 297 >gi|149037819|gb|EDL92179.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus] gi|149037822|gb|EDL92182.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus] Length = 158 Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI 75 V G+DE GRG + GP+V A + + DSK ++ +RE L+ K+ Sbjct: 30 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKM 83 >gi|156842375|ref|XP_001644555.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM 70294] gi|156115201|gb|EDO16697.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM 70294] Length = 312 Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 68/230 (29%), Gaps = 50/230 (21%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITSS 78 + G+DE GRG + GP+V + +DSKK++ R L+ K+ Sbjct: 37 VILGVDEAGRGPVMGPMVYGISYCTKEYQDTVLIPKYAFDDSKKLTDNIRRNLFSKMYDQ 96 Query: 79 -------------------------AIISISSASHQYIDKHNIHKATLDAIYHAVENLQV 113 + + Q + + + + V Sbjct: 97 NGDGTGEIEIDGVGYATTAITPVDISSGMLRYPPSQNYNLNEQAHDVTMNLIQGLVEKGV 156 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII---------AKVTRDRLMRIA 164 +D P + +++ A S+ AKVTRD ++ Sbjct: 157 TIDHVYVDTVGPPVSYQKKLETRFPNIKFTVAKKADSLYCVVSVASVVAKVTRDIILEQM 216 Query: 165 HKKYPDYGFDSHVGYPT-AKHQQVIKEKG------PSCIHRLTFRPLRNL 207 + GYP+ K + + P + R +++ + L Sbjct: 217 KSNENEI---LGSGYPSDPKTTAWLAKNQKQLFAWPQSLVRFSWQTCQTL 263 >gi|52081363|ref|YP_080154.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580] gi|52786740|ref|YP_092569.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580] gi|319647270|ref|ZP_08001492.1| ribonuclease HIII [Bacillus sp. BT1B_CT2] gi|73917844|sp|Q65GD8|RNH3_BACLD RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|52004574|gb|AAU24516.1| ribonuclease HIII [Bacillus licheniformis ATCC 14580] gi|52349242|gb|AAU41876.1| RnhC [Bacillus licheniformis ATCC 14580] gi|317390617|gb|EFV71422.1| ribonuclease HIII [Bacillus sp. BT1B_CT2] Length = 313 Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 70/210 (33%), Gaps = 38/210 (18%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 V G DEVG G GP+ VA + D +P G+ DSK + + ++ + Sbjct: 94 GSMSVIGSDEVGTGDYFGPITVACVYADKAKLPLLKELGVKDSKNLKDPQIVQIARDLIK 153 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--------- 128 + S+ ++ ++ + + + N + +DG Sbjct: 154 TVPYSLLVLRNEKYNEMQEKGMSQGKMKALLHNQAIGNLLKKLDGTRPEAILIDQFAEPA 213 Query: 129 -----------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + + + K + I LS+AAASIIA R + K G Sbjct: 214 VYFKHLAGKTAVKERTYFSTKAEGIHLSVAAASIIA---RYSFLMEMDKLSKQAGITLPK 270 Query: 178 GYPTAKHQQV----IKEKG------PSCIH 197 G + IK+ G + +H Sbjct: 271 GAG-PLVDEAGAKLIKKHGEDALRVFTKLH 299 >gi|258569747|ref|XP_002543677.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237903947|gb|EEP78348.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 352 Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 74/235 (31%), Gaps = 54/235 (22%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELY------- 72 V G+DE GRG + GP+V +A L + NDSK ++ R L Sbjct: 69 VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFNDSKVLTPGVRSNLMRLLCTPG 128 Query: 73 EKITSSAIISISSASHQYID--------KHNIHKATLDAIYHAVE--------------N 110 + S ++ S + I A + Sbjct: 129 HSLQKSCGWAVKLLSARDISAGMQRPGAGMYNLNAQAMDATVEIIRGVVEERGVDVKEVY 188 Query: 111 LQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD-RLMRIAHK--- 166 + I + + K DS+ ++AAS+ AKVTRD L Sbjct: 189 IDTIGNPQSYQKKLEMIFPSLKITVAKKADSLFPCVSAASVCAKVTRDSALDICYEALQK 248 Query: 167 -------KYPDYGFDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 ++ + G+ GYP+ K +K+ G R ++ + L Sbjct: 249 ERVGKGMEHMNDGW--GSGYPSDSKCTSWLKKEMHPLFGWGNECRFSWGTAKELL 301 >gi|225555530|gb|EEH03822.1| ribonuclease HI large subunit [Ajellomyces capsulatus G186AR] Length = 341 Score = 58.1 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 76/239 (31%), Gaps = 62/239 (25%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITS-- 77 V G+DE GRG + GP+V +A L + +DSK ++ R L ++++ Sbjct: 57 VLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQLSTPD 116 Query: 78 -----SAIISISSASHQ-------------YIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 S + S + Y AT + I V+ + + Sbjct: 117 NSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKEVY 176 Query: 120 ---------IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD-----------R 159 + + K DS+ S++AAS+ AKVTRD Sbjct: 177 IDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSMME 236 Query: 160 LMRIAHKKYPDYGFDSHVGYPT--------AKHQQVIKEKGPSCIH--RLTFRPLRNLS 208 + G+ GYP+ + G H R ++ R L Sbjct: 237 HCNAMEPESSGEGW--GSGYPSDSKCVGWLKNDMDKLFGWG----HECRFSWGTARELL 289 >gi|269940634|emb|CBI49013.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TW20] Length = 318 Score = 58.1 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAALHNEAIKNVLKKIDSSQLDYIV 210 Query: 125 IPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDYG 172 I + + ++ I L A ++ + ++R + + + Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNIN 270 Query: 173 FDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 271 MTIPKGAGAKVDVIAAKIIKKYGLSRL 297 >gi|39939117|ref|NP_950883.1| ribonuclease HII family 2 [Onion yellows phytoplasma OY-M] gi|39722226|dbj|BAD04716.1| ribonuclease HII Family 2 [Onion yellows phytoplasma OY-M] Length = 330 Score = 58.1 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 25/158 (15%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG-----INDSKKISHKKREELYEKITS 77 P G DEVG G + GPV+V + L NI F I +SKKIS +K +L I Sbjct: 116 YLPSIGSDEVGTGDVFGPVIVCCVYLTAKNIVFLQKLGTIAESKKISDEKIMQLAPLIMK 175 Query: 78 SAIISISSASH----QYIDKHNIHKATLDAIYHAV----------------ENLQVIPRS 117 I S+ Q I + N++K A+ + Sbjct: 176 EVIYSVKIMMPLEYNQTIKQCNLNKIKALMHNEAIKQTVLKASPNVPVILDQFCFPKNYF 235 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155 + + ++ + K DS S+A AS+IA+ Sbjct: 236 NYLQDQKAQNEIYTKIIFETKADSSYFSVAVASVIARY 273 >gi|154288434|ref|XP_001545012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150408653|gb|EDN04194.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 341 Score = 58.1 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 79/235 (33%), Gaps = 54/235 (22%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITS-- 77 V G+DE GRG + GP+V +A L + +DSK ++ + R L ++++ Sbjct: 57 VLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPEVRSSLMRQLSTPG 116 Query: 78 -----SAIISISSASHQ-------------YIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 S + S + Y AT + I V+ + + Sbjct: 117 NSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKEVY 176 Query: 120 ---------IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD-----------R 159 + + K DS+ S++AAS+ AKVTRD + Sbjct: 177 IDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSMMK 236 Query: 160 LMRIAHKKYPDYGFDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 + G+ GYP+ K +K G R ++ R L Sbjct: 237 HCNAMEPERSGEGW--GSGYPSDSKCVGWLKNDMDKLFGWGLECRFSWGTARELL 289 >gi|253733626|ref|ZP_04867791.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH130] gi|253728326|gb|EES97055.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH130] Length = 318 Score = 58.1 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 69/208 (33%), Gaps = 27/208 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 EL E++ + S+ + ++ K AV + + I S + + Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKY-NIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 209 Query: 130 PCQAFAVIKGDSISL------------------SIAAASIIAKVTRDRLMRIAHKKYPDY 171 FA + + A ++ + ++R + + + Sbjct: 210 VIDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNI 269 Query: 172 GFDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 270 NMTIPKGAGAKVDVIAAKIIKKYGLSRL 297 >gi|161509314|ref|YP_001574973.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|282919917|ref|ZP_06327646.1| ribonuclease HIII [Staphylococcus aureus A9765] gi|304381303|ref|ZP_07363956.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|160368123|gb|ABX29094.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|282594633|gb|EFB99617.1| ribonuclease HIII [Staphylococcus aureus A9765] gi|304340286|gb|EFM06227.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320141045|gb|EFW32892.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA131] gi|320143102|gb|EFW34892.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MRSA177] gi|329313808|gb|AEB88221.1| Ribonuclease HIII [Staphylococcus aureus subsp. aureus T0131] gi|329728888|gb|EGG65309.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21193] gi|329730784|gb|EGG67163.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21189] Length = 318 Score = 58.1 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIV 210 Query: 125 IPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDYG 172 I + + ++ I L A ++ + ++R + + + Sbjct: 211 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNIN 270 Query: 173 FDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 271 MTIPKGAGAKVDVIAAKIIKKYGLSRL 297 >gi|57651749|ref|YP_186013.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus COL] gi|87161110|ref|YP_493737.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194841|ref|YP_499639.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221263|ref|YP_001332085.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. Newman] gi|221140462|ref|ZP_03564955.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451837|ref|ZP_05699858.1| ribonuclease HIII [Staphylococcus aureus A5948] gi|262051696|ref|ZP_06023915.1| ribonuclease HIII [Staphylococcus aureus 930918-3] gi|284024065|ref|ZP_06378463.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 132] gi|294848130|ref|ZP_06788877.1| ribonuclease HIII [Staphylococcus aureus A9754] gi|73917848|sp|Q5HGU4|RNH3_STAAC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|122539781|sp|Q2FZD7|RNH3_STAA8 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|123486345|sp|Q2FHU1|RNH3_STAA3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|172048827|sp|A6QG41|RNH3_STAAE RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|57285935|gb|AAW38029.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus COL] gi|87127084|gb|ABD21598.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202399|gb|ABD30209.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374063|dbj|BAF67323.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. Newman] gi|257860445|gb|EEV83272.1| ribonuclease HIII [Staphylococcus aureus A5948] gi|259160431|gb|EEW45456.1| ribonuclease HIII [Staphylococcus aureus 930918-3] gi|294824930|gb|EFG41352.1| ribonuclease HIII [Staphylococcus aureus A9754] gi|302750963|gb|ADL65140.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315196863|gb|EFU27206.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS01] Length = 312 Score = 58.1 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 25/207 (12%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 86 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144 Query: 70 ELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 145 ELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAALHNEAIKNVLEKIDSSQLDYIV 204 Query: 125 IPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDYG 172 I + + ++ I L A ++ + ++R + + + Sbjct: 205 IDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNIN 264 Query: 173 FDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 265 MTIPKGAGAKVDVIAAKIIKKYGLSRL 291 >gi|49485978|ref|YP_043199.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MSSA476] gi|73917852|sp|Q6GA74|RNH3_STAAS RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|49244421|emb|CAG42849.1| putative ribonuclease [Staphylococcus aureus subsp. aureus MSSA476] Length = 312 Score = 58.1 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 27/206 (13%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 86 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 EL +++ + S+ + ++ K AV + + I S + + Sbjct: 145 ELADQLVTFIPHSLLTLHNEKY-NIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 203 Query: 130 PCQAFAVIKGDSISL------------------SIAAASIIAKVTRDRLMRIAHKKYPDY 171 FA + + A ++ + ++R + + + Sbjct: 204 VIDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNI 263 Query: 172 GFDSHVGYPTA-KHQQV--IKEKGPS 194 G IK+ G S Sbjct: 264 NMTIPKGAGAKVDVIAAKIIKKYGLS 289 >gi|297208222|ref|ZP_06924652.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912299|ref|ZP_07129742.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH70] gi|296886961|gb|EFH25864.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886545|gb|EFK81747.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus TCH70] Length = 318 Score = 58.1 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 27/206 (13%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 92 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 150 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 EL E++ + S+ + ++ K AV + + I S + + Sbjct: 151 ELAEQLVTFIPHSLLTLHNEKY-NIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 209 Query: 130 PCQAFAVIKGDSISL------------------SIAAASIIAKVTRDRLMRIAHKKYPDY 171 FA + + A ++ + ++R + + + Sbjct: 210 VIDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNI 269 Query: 172 GFDSHVGYPTA-KHQQV--IKEKGPS 194 G IK+ G S Sbjct: 270 NMTIPKGAGAKVDVIAAKIIKKYGLS 295 >gi|21282752|ref|NP_645840.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MW2] gi|73917853|sp|Q8NX59|RNH3_STAAW RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|21204190|dbj|BAB94888.1| MW1023 [Staphylococcus aureus subsp. aureus MW2] Length = 312 Score = 58.1 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 27/206 (13%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKRE 69 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 86 LEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIV 144 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 EL E++ + S+ + ++ K AV + + I S + + Sbjct: 145 ELAEQLVTFIPHSLLTLHNEKY-NIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 203 Query: 130 PCQAFAVIKGDSISL------------------SIAAASIIAKVTRDRLMRIAHKKYPDY 171 FA + + A ++ + ++R + + + Sbjct: 204 VIDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNI 263 Query: 172 GFDSHVGYPTA-KHQQV--IKEKGPS 194 G IK+ G S Sbjct: 264 NMTIPKGAGAKVDVIAAKIIKKYGLS 289 >gi|67537888|ref|XP_662718.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4] gi|40743105|gb|EAA62295.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4] gi|259484559|tpe|CBF80886.1| TPA: ribonuclease HI large subunit (AFU_orthologue; AFUA_1G07600) [Aspergillus nidulans FGSC A4] Length = 339 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 35/169 (20%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI------NDSKKISHKKREELYEKITS- 77 + GIDE GRG + GP+V +A L + + NDSK ++ R L + + Sbjct: 63 LILGIDEAGRGPVLGPMVYSAFYLPSSLHHSLLSEEYSFNDSKVLTAGVRANLMRILCTQ 122 Query: 78 ------SAIISISSASHQYIDKHNIHKA----------------------TLDAIYHAVE 109 S + S + I + A + Sbjct: 123 GSPLHESCGWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELIRGVVEERKLNVREV 182 Query: 110 NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD 158 + I A + + K DS+ ++AAS++AKVTRD Sbjct: 183 YIDTIGNPASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRD 231 >gi|194017282|ref|ZP_03055894.1| ribonuclease hiii [Bacillus pumilus ATCC 7061] gi|194011150|gb|EDW20720.1| ribonuclease hiii [Bacillus pumilus ATCC 7061] Length = 307 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 69/207 (33%), Gaps = 40/207 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V A +D + G+ DSK + + + + + + Sbjct: 95 VIGSDEVGTGDYFGPMTVCAAYVDASQLALMKELGVKDSKGLKDPQIINIAKDLIKTIPF 154 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL--------------------QVIPRSALID 121 S+ ++ + + + + N Q Sbjct: 155 SLLVLRNEKYNAMQEKGMSQGKMKALLHNQVITSVLEKLDGKQPEAILIDQFAEPGIYFK 214 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + + + + K + I LS+AAASIIA R + K GFD G Sbjct: 215 HLAGKKIIRERTYFSTKAEGIHLSVAAASIIA---RYAFLIEMDKLSKAAGFDIPKGAG- 270 Query: 182 AKHQQ-----VIKEKG------PSCIH 197 H +IK G + +H Sbjct: 271 -PHVDKAAAKLIKLHGEEALRQFTKLH 296 >gi|530464|emb|CAA83799.1| ribonuclease HII [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 114 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 1/114 (0%) Query: 39 GPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSA-IISISSASHQYIDKHNIH 97 GP+VVA++IL P+ I DSKK++ K R+ L+++I ++ I S + +D+ N Sbjct: 1 GPLVVASVILKPDYFNPLIKDSKKLNPKTRQVLFDEIINNCLDYQIMIISSKQVDELNPL 60 Query: 98 KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASI 151 +A+L + NL++ P ALIDG + ++IKGD + SIA +SI Sbjct: 61 QASLLGFKTTISNLKIXPDLALIDGNQNINLENIKTLSIIKGDDNNFSIACSSI 114 >gi|296810182|ref|XP_002845429.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480] gi|238842817|gb|EEQ32479.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480] Length = 342 Score = 57.7 bits (138), Expect = 9e-07, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 29/157 (18%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISS 85 V GIDE GRG + GP+V +A L + ++ + + + +S ++ Sbjct: 68 VLGIDEAGRGPVLGPMVYSAFYLPMHLHK------SLLAEEHHFDDSHSLHNSCGWAVKV 121 Query: 86 ASHQYIDK---------HNIHKATLDAIYHAVE--------------NLQVIPRSALIDG 122 S + I A + + I + Sbjct: 122 MSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQRIDVKEVYVDTIGKPETHQA 181 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDR 159 R + + K DS+ S++AAS+ AKVTRD Sbjct: 182 RLLRVFPGLKITVAKKADSLYPSVSAASVCAKVTRDA 218 >gi|240273728|gb|EER37247.1| ribonuclease HI large subunit [Ajellomyces capsulatus H143] gi|325094841|gb|EGC48151.1| ribonuclease HI large subunit [Ajellomyces capsulatus H88] Length = 341 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 80/239 (33%), Gaps = 62/239 (25%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKITS-- 77 V G+DE GRG + GP+V +A L + +DSK ++ R L ++++ Sbjct: 57 VLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQLSTPD 116 Query: 78 -----SAIISISSASHQ-------------YIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 S + S + Y AT + I V+ + + Sbjct: 117 NSLSSSCGWGVKVMSARDIAAGMLQPGTRNYNLNAQAMDATTELIRCIVQERGINVKEVY 176 Query: 120 IDGRSIPEDLPCQAFAVI---------KGDSISLSIAAASIIAKVTRD-----------R 159 ID PE + + K DS+ S++AAS+ AKVTRD Sbjct: 177 IDTIGNPEAYQRKLEQIFPSLQITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSMME 236 Query: 160 LMRIAHKKYPDYGFDSHVGYPT--------AKHQQVIKEKGPSCIH--RLTFRPLRNLS 208 + G+ GYP+ + G H R ++ R L Sbjct: 237 HCNAMEPESSGEGW--GSGYPSDSKCVGWLKNDMDKLFGWG----HECRFSWGTARELL 289 >gi|259047147|ref|ZP_05737548.1| ribonuclease HIII [Granulicatella adiacens ATCC 49175] gi|259036197|gb|EEW37452.1| ribonuclease HIII [Granulicatella adiacens ATCC 49175] Length = 270 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 37/203 (18%) Query: 4 NSIPERP-HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GIN 58 P P F W V G DEVG GA GP+ VA+ + NIP G+ Sbjct: 44 KDAPSLPKDFS---------SWSVMGSDEVGNGAYFGPLTVASAYVSKENIPLLKKMGVK 94 Query: 59 DSKKISHKKREELYEKITSSAIISISSASHQYIDK----HNIHKATLDAIYHAVENLQVI 114 DSK ++ ++ KI + + + ++ N+++ A+ L Sbjct: 95 DSKDLTDEQIRAFVPKIKEVIPYKLLTLWPEKYNEVQQVKNLNEMKALLHNQALRLLSEK 154 Query: 115 PRSALIDGRSIPEDL----------------PCQAFAVIKGDSISLSIAAASIIAKVTRD 158 +G I + + + + KG+S +++AAAS+IA+ Sbjct: 155 IMPESPEGFLIDQFCKPELYYRYLKGQPLVDKNKTYFITKGESHHIAVAAASMIARC--- 211 Query: 159 RLMRIAHKKYPDYGFDSHVGYPT 181 + ++G+ G + Sbjct: 212 AFLDGLDSLSTEFGYKLPSGAGS 234 >gi|302413253|ref|XP_003004459.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102] gi|261357035|gb|EEY19463.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102] Length = 264 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 34/186 (18%) Query: 17 MVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKRE 69 + + V GIDE GRG + GP+ AA L + DSK ++ R Sbjct: 60 ELAAPDSPAVCLGIDEAGRGPVLGPMTYAAFYLPMPLSDPLLRETHHFDDSKVLTPAVRS 119 Query: 70 ELYEKITS-------SAIISISSASHQYIDKHNIHKATLDAIYHAVE------------- 109 L + S S ++ S S + I + A + Sbjct: 120 ALMRALCSPSTDLAASCGYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEIIKGVIAR 179 Query: 110 -------NLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMR 162 + + + A + + K DS+ ++AAS+ AKVTRD + Sbjct: 180 GVRVEEIYVDTVGQPAAYQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAKVTRDAALE 239 Query: 163 IAHKKY 168 + ++ + Sbjct: 240 VMYEAH 245 >gi|257867416|ref|ZP_05647069.1| ribonuclease HIII [Enterococcus casseliflavus EC30] gi|257873746|ref|ZP_05653399.1| ribonuclease HIII [Enterococcus casseliflavus EC10] gi|257877497|ref|ZP_05657150.1| ribonuclease HIII [Enterococcus casseliflavus EC20] gi|257801472|gb|EEV30402.1| ribonuclease HIII [Enterococcus casseliflavus EC30] gi|257807910|gb|EEV36732.1| ribonuclease HIII [Enterococcus casseliflavus EC10] gi|257811663|gb|EEV40483.1| ribonuclease HIII [Enterococcus casseliflavus EC20] Length = 308 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 65/201 (32%), Gaps = 29/201 (14%) Query: 4 NSIPERPHFELEAMVREKNM--WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGI 57 +++P++ + + V G DEVG G+ GP+VV A+ +P G+ Sbjct: 70 SAVPDKKKATVSSTALPAGFSEKSVVGSDEVGNGSYFGPLVVCAVYAKKEQLPQLKALGV 129 Query: 58 NDSKKISHKKREELYEKITSSAIISISSASHQYIDKHN------------IHKATLDAIY 105 DSK ++ + ++ KI + + + ++ ++A + Sbjct: 130 KDSKMLTDPEIRKMAPKIKELVPYQLLTVTPSKYNEIQPKYNTVRMKVALHNQAIRLLLQ 189 Query: 106 HAVENLQVIPRSALIDGRSIPEDL--------PCQAFAVIKGDSISLSIAAASIIAKVTR 157 + + KG+ L++AAASI+ R Sbjct: 190 KIAPETPDAILIDQFTSEKNYRTYLKSEQVAVTEKLYFATKGEQYHLAVAAASIL---CR 246 Query: 158 DRLMRIAHKKYPDYGFDSHVG 178 + + G G Sbjct: 247 TVFLDELDAASKEVGLRLPSG 267 >gi|329725159|gb|EGG61648.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus 21172] Length = 318 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 25/208 (12%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 91 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 149 Query: 69 EELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 EL E++ + S+ + + + K A++N+ S+ +D Sbjct: 150 VELAEQLVAFIPHSLLTLHNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 209 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDY 171 I + + ++ I L A ++ + ++R + + Sbjct: 210 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISKYI 269 Query: 172 GFDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 270 NMTIPKGAGAKVDVIAAKIIKKYGLSRL 297 >gi|269202752|ref|YP_003282021.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ED98] gi|262075042|gb|ACY11015.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ED98] Length = 312 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 25/208 (12%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 85 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 143 Query: 69 EELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 EL E++ + S+ + + + K A++N+ S+ +D Sbjct: 144 VELAEQLVAFIPHSLLTLHNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 203 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDY 171 I + + ++ I L A ++ + ++R + + Sbjct: 204 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISKYI 263 Query: 172 GFDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 264 NMTIPKGAGAKVDVIAAKIIKKYGLSRL 291 >gi|15924130|ref|NP_371664.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50] gi|15926724|ref|NP_374257.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus N315] gi|148267632|ref|YP_001246575.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH9] gi|150393687|ref|YP_001316362.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH1] gi|156979462|ref|YP_001441721.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu3] gi|253317077|ref|ZP_04840290.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005926|ref|ZP_05144527.2| ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795130|ref|ZP_05644109.1| ribonuclease HIII [Staphylococcus aureus A9781] gi|258407162|ref|ZP_05680311.1| ribonuclease HIII [Staphylococcus aureus A9763] gi|258421747|ref|ZP_05684668.1| ribonuclease HIII [Staphylococcus aureus A9719] gi|258432909|ref|ZP_05688598.1| ribonuclease HIII [Staphylococcus aureus A9299] gi|258443399|ref|ZP_05691742.1| ribonuclease HIII [Staphylococcus aureus A8115] gi|258446072|ref|ZP_05694234.1| ribonuclease HIII [Staphylococcus aureus A6300] gi|258449815|ref|ZP_05697913.1| ribonuclease HIII [Staphylococcus aureus A6224] gi|258454914|ref|ZP_05702877.1| ribonuclease HIII [Staphylococcus aureus A5937] gi|282894167|ref|ZP_06302398.1| ribonuclease HIII [Staphylococcus aureus A8117] gi|282928662|ref|ZP_06336259.1| ribonuclease HIII [Staphylococcus aureus A10102] gi|295405944|ref|ZP_06815753.1| ribonuclease HIII [Staphylococcus aureus A8819] gi|296275627|ref|ZP_06858134.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus MR1] gi|297246504|ref|ZP_06930342.1| ribonuclease HIII [Staphylococcus aureus A8796] gi|73917849|sp|Q99UW5|RNH3_STAAM RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|73917850|sp|Q7A647|RNH3_STAAN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|166226672|sp|A7X163|RNH3_STAA1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|189043676|sp|A6U0V7|RNH3_STAA2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|189043677|sp|A5IS26|RNH3_STAA9 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|13700940|dbj|BAB42236.1| SA0987 [Staphylococcus aureus subsp. aureus N315] gi|14246910|dbj|BAB57302.1| putative ribonuclease HIII [Staphylococcus aureus subsp. aureus Mu50] gi|147740701|gb|ABQ48999.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH9] gi|149946139|gb|ABR52075.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus JH1] gi|156721597|dbj|BAF78014.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257789102|gb|EEV27442.1| ribonuclease HIII [Staphylococcus aureus A9781] gi|257841317|gb|EEV65762.1| ribonuclease HIII [Staphylococcus aureus A9763] gi|257842080|gb|EEV66508.1| ribonuclease HIII [Staphylococcus aureus A9719] gi|257849349|gb|EEV73326.1| ribonuclease HIII [Staphylococcus aureus A9299] gi|257851489|gb|EEV75428.1| ribonuclease HIII [Staphylococcus aureus A8115] gi|257855130|gb|EEV78071.1| ribonuclease HIII [Staphylococcus aureus A6300] gi|257856735|gb|EEV79638.1| ribonuclease HIII [Staphylococcus aureus A6224] gi|257862794|gb|EEV85559.1| ribonuclease HIII [Staphylococcus aureus A5937] gi|282589701|gb|EFB94787.1| ribonuclease HIII [Staphylococcus aureus A10102] gi|282763653|gb|EFC03782.1| ribonuclease HIII [Staphylococcus aureus A8117] gi|285816820|gb|ADC37307.1| Ribonuclease HIII [Staphylococcus aureus 04-02981] gi|294969379|gb|EFG45399.1| ribonuclease HIII [Staphylococcus aureus A8819] gi|297176610|gb|EFH35873.1| ribonuclease HIII [Staphylococcus aureus A8796] gi|312829533|emb|CBX34375.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128537|gb|EFT84542.1| ribonuclease HIII [Staphylococcus aureus subsp. aureus CGS03] Length = 312 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 25/208 (12%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 85 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 143 Query: 69 EELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 EL E++ + S+ + + + K A++N+ S+ +D Sbjct: 144 VELAEQLVAFIPHSLLTLHNDKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 203 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDY 171 I + + ++ I L A ++ + ++R + + Sbjct: 204 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISKYI 263 Query: 172 GFDSHVGYPTA-KHQQV--IKEKGPSCI 196 G IK+ G S + Sbjct: 264 NMTIPKGAGAKVDVIAAKIIKKYGLSRL 291 >gi|319789920|ref|YP_004151553.1| ribonuclease HIII [Thermovibrio ammonificans HB-1] gi|317114422|gb|ADU96912.1| ribonuclease HIII [Thermovibrio ammonificans HB-1] Length = 270 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 24/205 (11%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREE 70 E ++ + + + G DE G+G GP+VVA I+ D I G+ DSKK+S++K EE Sbjct: 64 ETVLSDTELPRI-GCDEAGKGEFVGPLVVACIVADEKCLKRLIELGVKDSKKLSNEKVEE 122 Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 L +IT + + + ++ ++ + AV V + + D Sbjct: 123 LASEITETCHGKVKLLIPEKYNRAYSKFKNINRLLEAVYREIVSDLCEKFSPKVVVVDKF 182 Query: 131 CQ-------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 V L++AAASI+AK R + M+ K++ + + Sbjct: 183 SNRAEEVLKDVVKGARLEVRPKAEDDLAVAAASIVAKAVRLKTMKELEKRFKVKLPEGNT 242 Query: 178 GYPTAKHQQVIKEKGPSCIHRLTFR 202 G + +K P +H F+ Sbjct: 243 G------LAELLKKTPKELHEKLFK 261 >gi|114675613|ref|XP_001169836.1| PREDICTED: similar to Ribonuclease H2, large subunit isoform 1 [Pan troglodytes] Length = 255 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 41/205 (20%) Query: 41 VVVAAIILD----PNNIPFGINDSKKISHKKREELYEKI--TSSAIISISSASHQYIDKH 94 +V A + + DSK + +RE L+ K+ T ++ S I Sbjct: 1 MVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTS 60 Query: 95 N-------------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFA 135 I A + + + R + Sbjct: 61 MLGRVKYNLNSLSHDTATGLIQYALYQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTV 120 Query: 136 VIKGDSISLSIAAASIIAKVTRDR------LMRIAHKKYPDYGFDSHVGYPT-AKHQQVI 188 K D++ ++AASI AKV RD+ + DYG GYP K + + Sbjct: 121 KAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSDTDYG----SGYPNDPKTKAWL 176 Query: 189 KEK-----GPSCIHRLTFRPLRNLS 208 KE G R ++R + + Sbjct: 177 KEHVEPVFGFPQFVRFSWRTAQTIL 201 >gi|156063040|ref|XP_001597442.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980] gi|154696972|gb|EDN96710.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980 UF-70] Length = 361 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 82/233 (35%), Gaps = 54/233 (23%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKIT----- 76 GIDE GRG + GP+V L +DSK ++ R EL +K+ Sbjct: 70 GIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMKKLCTPDSD 129 Query: 77 --SSAIISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NLQVIP 115 + ++ S + I + + AT + A++ + + Sbjct: 130 LYTQCGWAVDVLSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDALG 189 Query: 116 RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY------P 169 + + Q K DS+ ++AAS+ AKVTRD + ++ Y Sbjct: 190 NTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALETLYESYVSKDGDQ 249 Query: 170 DYG--------FDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 + G + GYP+ A+ +K G R ++ +++ Sbjct: 250 EMGGTEVAEDSW--GSGYPSDARATAWLKRNMDPIFGWGSECRFSWGTTKDML 300 >gi|225684872|gb|EEH23156.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb03] Length = 343 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 76/235 (32%), Gaps = 54/235 (22%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELY------- 72 V G+DE GRG + GP+V +A L + +DSK ++ R L Sbjct: 58 VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLCTPD 117 Query: 73 EKITSSAIISISSASHQ-------------YIDKHNIHKATLDAIYHAVENLQVIP---- 115 + +S + S + Y AT++ I VE + V Sbjct: 118 HSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEVY 177 Query: 116 -----RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD-RLMRIAHKKYP 169 + + K DS+ S++AAS+ AKVTRD L Sbjct: 178 IDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEALVK 237 Query: 170 DY----------GFDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 G+ GYP+ K +K G R ++ R L Sbjct: 238 QRGAMEQEGAADGW--GSGYPSDSKCVGWLKNDMDSLFGWGNECRFSWGTARELL 290 >gi|226287752|gb|EEH43265.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb18] Length = 343 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 76/235 (32%), Gaps = 54/235 (22%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELY------- 72 V G+DE GRG + GP+V +A L + +DSK ++ R L Sbjct: 58 VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLCTPD 117 Query: 73 EKITSSAIISISSASHQ-------------YIDKHNIHKATLDAIYHAVENLQVIP---- 115 + +S + S + Y AT++ I VE + V Sbjct: 118 HSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEVY 177 Query: 116 -----RSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD-RLMRIAHKKYP 169 + + K DS+ S++AAS+ AKVTRD L Sbjct: 178 IDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEALVK 237 Query: 170 DY----------GFDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 G+ GYP+ K +K G R ++ R L Sbjct: 238 QRGAMEQEGAADGW--GSGYPSDSKCVGWLKNDMDSLFGWGNECRFSWGTARELL 290 >gi|325568912|ref|ZP_08145205.1| ribonuclease HIII [Enterococcus casseliflavus ATCC 12755] gi|325157950|gb|EGC70106.1| ribonuclease HIII [Enterococcus casseliflavus ATCC 12755] Length = 308 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 6/96 (6%) Query: 4 NSIPERPHFELEAMVREKNM--WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGI 57 +++P++ + V G DEVG G+ GP+VV A+ +P G+ Sbjct: 70 SAVPDKKKATVSTTALPAGFSEKSVVGSDEVGNGSYFGPLVVCAVYAKKEQLPQLKALGV 129 Query: 58 NDSKKISHKKREELYEKITSSAIISISSASHQYIDK 93 DSK ++ + ++ KI + + + ++ Sbjct: 130 KDSKMLTDPEIRKMAPKIKELVPYQLLTVTPSKYNE 165 >gi|182413914|ref|YP_001818980.1| ribonuclease HIII [Opitutus terrae PB90-1] gi|177841128|gb|ACB75380.1| ribonuclease HIII [Opitutus terrae PB90-1] Length = 334 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 5/156 (3%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKK 67 + ++ P AG+DE G+G GPV+ A +I + G+ DSKKI+ + Sbjct: 92 LGYDEVLHPDWFEPHAGLDESGKGDFFGPVIAATVIAEKPAIEAWRKAGVQDSKKIAETR 151 Query: 68 REELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 EL + I + + + + + K+N A A + + Q + Sbjct: 152 IIELDKLIRETPGVVVRTCYC-GMPKYNELMARPGANLNRLLAWQHATALDQALAAKPVK 210 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRI 163 F L+ R R Sbjct: 211 WGLLDQFTEQPLAQRELAKKGVKEFELKMRTRAEED 246 >gi|254443118|ref|ZP_05056594.1| ribonuclease HIII [Verrucomicrobiae bacterium DG1235] gi|198257426|gb|EDY81734.1| ribonuclease HIII [Verrucomicrobiae bacterium DG1235] Length = 334 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 7/96 (7%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKK 67 F + + + AG+DE G+G L GPVV A +I D + GI DSK I+ + Sbjct: 94 FGYDEVYHPEWFESHAGMDESGKGDLFGPVVTACVIADKVHIDQWVKDGIRDSKTITDSR 153 Query: 68 REELYEKITSS---AIISISSASHQYIDKHNIHKAT 100 +L + I + ++ + +Y + +A Sbjct: 154 ILKLDKIIRGTKGVSVETCFCGMPKYNELMGKPRAN 189 >gi|325845139|ref|ZP_08168448.1| ribonuclease HIII [Turicibacter sp. HGF1] gi|325488804|gb|EGC91204.1| ribonuclease HIII [Turicibacter sp. HGF1] Length = 308 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 78/218 (35%), Gaps = 42/218 (19%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G GP+VV ++ + GI DSK + + +L +I + Sbjct: 96 IGCDEVGTGDYFGPIVVCCASVEKDQIAFLQEMGIKDSKALKDLEICQLAHQIETMIPHQ 155 Query: 83 ISSASHQYID------------KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 ++ + K +H L + ++ +L + D Sbjct: 156 CLVLPNEKYNLMVEKGMNANSIKAYLHNQALLKLTTSLPSLPDFIIMDEFVNEAKYYDYL 215 Query: 131 CQ-----------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + + KG+S+ +++AAASI+A+ + + M+I KK Y F+ G Sbjct: 216 KKLPKQPTIVSENLHFIQKGESVHVAVAAASILARASFVKYMQIMSKK---YQFELPKGA 272 Query: 180 PTA---KHQQVIKEKG------PSCIHRLTFRPLRNLS 208 ++ +K G + H F + Sbjct: 273 GAPVDIAGRKFVKLHGKETLQSLTKWH---FANTNKIL 307 >gi|313609179|gb|EFR84856.1| ribonuclease hiii [Listeria monocytogenes FSL F2-208] Length = 293 Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 71/210 (33%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 76 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLV 135 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDGRSIPEDLP 130 S+ + ++ + + N + A++ + ++ Sbjct: 136 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTY 195 Query: 131 CQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + F K + + LS+AAASIIA R + ++ + + G G Sbjct: 196 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDEMSKEVGIPLPKG 252 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 253 AG--PHVDAVAAEIIERFGLETLAKYTKQH 280 >gi|157693280|ref|YP_001487742.1| ribonuclease HIII [Bacillus pumilus SAFR-032] gi|166991072|sp|A8FG15|RNH3_BACP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|157682038|gb|ABV63182.1| ribonuclease H [Bacillus pumilus SAFR-032] Length = 307 Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 70/207 (33%), Gaps = 40/207 (19%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V A +D ++ G+ DSK + + + + + + Sbjct: 95 VIGSDEVGTGDYFGPITVCAAYVDASHLALMKELGVKDSKGLKDPQIINIAKDLIKTIPF 154 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENL--------------------QVIPRSALID 121 S+ ++ + + + + N Q Sbjct: 155 SLLVLRNEKYNAMQEKGMSQGKMKALLHNQVITSALEKLDGKQPEAILIDQFAEPGIYFK 214 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + + + + K + I LS+AAASIIA R + K GF+ G Sbjct: 215 HLAGKKIIRERTYFSTKAEGIHLSVAAASIIA---RYAFLIEMDKLSEAAGFEIPKGAG- 270 Query: 182 AKHQQ-----VIKEKG------PSCIH 197 H +IK G + +H Sbjct: 271 -PHVDKAAAKLIKLHGEEALRQFTKLH 296 >gi|171689874|ref|XP_001909876.1| hypothetical protein [Podospora anserina S mat+] gi|170944899|emb|CAP71010.1| unnamed protein product [Podospora anserina S mat+] Length = 342 Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 76/259 (29%), Gaps = 61/259 (23%) Query: 7 PERPHFELEAMVREKNMWPVA-GIDEVGRGALAGPVVVAAIILDPNNIP------FGIND 59 P P + + PV G+DE GRG + GP+V L +D Sbjct: 39 PVPPSL----LASAEKSVPVCLGVDEAGRGPVLGPMVYGIFYLPLPLSDPLLRQTHHFDD 94 Query: 60 SKKISHKKREELYE-------KITSSAIISIS----------SASHQYIDKHNIHKATLD 102 SK ++ + R L + + S + + A Sbjct: 95 SKVLTPQVRSSLMQTLSTAGSDLHQSCGWATTLLSAGDISAGMMRPSNAGGSYNLNAQAM 154 Query: 103 AIYHAV-------------ENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAA 149 + + I + A + + K DS+ ++AA Sbjct: 155 DATVQLIQGIYDRGVNIQEIYVDTIGQPAAYQKKLERIFPTAKITVAKKADSLYPCVSAA 214 Query: 150 SIIAKVTRDRLMRIAHK--------------KYPDYGFDSHVGYPTAKH-QQVIKE---- 190 S+ AKVTRD + + K D + GYP+ + ++ Sbjct: 215 SVCAKVTRDAALEVLWKTRGRPPAREEEKDKNEEDTDMEWGSGYPSDQRCVTWLRGNMHP 274 Query: 191 -KGPSCIHRLTFRPLRNLS 208 G R ++ +++ Sbjct: 275 VFGWGPECRFSWGTAKDML 293 >gi|297529143|ref|YP_003670418.1| ribonuclease HIII [Geobacillus sp. C56-T3] gi|297252395|gb|ADI25841.1| ribonuclease HIII [Geobacillus sp. C56-T3] Length = 311 Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 7/85 (8%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKRE 69 LE + + + G DEVG G GP+VVAA +D ++I G+ DSK+++ + + Sbjct: 86 LERRLEKLSA---IGSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLNDEAIK 142 Query: 70 ELYEKITSSAIISISSASHQYIDKH 94 + I +A +++ + ++ Sbjct: 143 RIAPAIMETAPYAVTVLDNAEYNRW 167 >gi|261418289|ref|YP_003251971.1| ribonuclease HIII [Geobacillus sp. Y412MC61] gi|319767751|ref|YP_004133252.1| ribonuclease HIII [Geobacillus sp. Y412MC52] gi|261374746|gb|ACX77489.1| ribonuclease HIII [Geobacillus sp. Y412MC61] gi|317112617|gb|ADU95109.1| ribonuclease HIII [Geobacillus sp. Y412MC52] Length = 311 Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 7/85 (8%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKRE 69 LE + + + G DEVG G GP+VVAA +D ++I G+ DSK+++ + + Sbjct: 86 LERRLEKLSA---IGSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLNDEAIK 142 Query: 70 ELYEKITSSAIISISSASHQYIDKH 94 + I +A +++ + ++ Sbjct: 143 RIAPAIMETAPYAVTVLDNAEYNRW 167 >gi|254828588|ref|ZP_05233275.1| rnhC [Listeria monocytogenes FSL N3-165] gi|258600986|gb|EEW14311.1| rnhC [Listeria monocytogenes FSL N3-165] Length = 293 Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 66/210 (31%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 76 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLV 135 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------- 125 S+ + ++ + + N + + Sbjct: 136 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTY 195 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 196 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGISLPKG 252 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 253 AG--PHVDAVAAEIIERFGLETLAKYTKQH 280 >gi|47095070|ref|ZP_00232683.1| ribonuclease HIII, putative [Listeria monocytogenes str. 1/2a F6854] gi|254830018|ref|ZP_05234673.1| ribonuclease HIII [Listeria monocytogenes 10403S] gi|254898611|ref|ZP_05258535.1| ribonuclease HIII [Listeria monocytogenes J0161] gi|254911900|ref|ZP_05261912.1| ribonuclease HIII [Listeria monocytogenes J2818] gi|254936225|ref|ZP_05267922.1| rnhC [Listeria monocytogenes F6900] gi|284801548|ref|YP_003413413.1| ribonuclease HIII [Listeria monocytogenes 08-5578] gi|284994690|ref|YP_003416458.1| ribonuclease HIII [Listeria monocytogenes 08-5923] gi|47016688|gb|EAL07608.1| ribonuclease HIII, putative [Listeria monocytogenes str. 1/2a F6854] gi|258608815|gb|EEW21423.1| rnhC [Listeria monocytogenes F6900] gi|284057110|gb|ADB68051.1| ribonuclease HIII [Listeria monocytogenes 08-5578] gi|284060157|gb|ADB71096.1| ribonuclease HIII [Listeria monocytogenes 08-5923] gi|293589858|gb|EFF98192.1| ribonuclease HIII [Listeria monocytogenes J2818] Length = 293 Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 66/210 (31%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 76 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLV 135 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------- 125 S+ + ++ + + N + + Sbjct: 136 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTY 195 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 196 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGISLPKG 252 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 253 AG--PHVDAVAAEIIERFGLETLAKYTKQH 280 >gi|227499052|ref|ZP_03929189.1| ribonuclease HIII [Acidaminococcus sp. D21] gi|226904501|gb|EEH90419.1| ribonuclease HIII [Acidaminococcus sp. D21] Length = 320 Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 30/208 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 AG DE G+G GP+ VAA+ILD + G+ DSK +S K L ++ + A S Sbjct: 114 AGSDESGKGDYLGPLCVAAVILDEIGAKKLLALGVRDSKTLSDAKIRRLAPQVYAIAKAS 173 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPR-------SALIDGRSIPEDLPCQAFA 135 ++A KA + ++ I + Sbjct: 174 AAAALMPQQYNEEYEKAQNLNPLLSTYHIGAIMTVLKKVPECHFALVDQFTRSPYIKNEL 233 Query: 136 VIKGDSISLSI-------AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV- 187 +S+ A + + + R ++ + + GF+ G + Sbjct: 234 ERAVPGLSVYSHTKGEADMAVAAASILARSLFLKKMEELSQEAGFELPFGGGAQATRAAE 293 Query: 188 --IKEKG------PSCIHRLTFRPLRNL 207 I+++G + +H F +NL Sbjct: 294 KIIQQEGRERLGHYAKLH---FANTKNL 318 >gi|327439303|dbj|BAK15668.1| ribonuclease HIII [Solibacillus silvestris StLB046] Length = 309 Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 57/177 (32%), Gaps = 28/177 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DE G G GPV VAA+ + + G+ DSK+++ ++ + Sbjct: 92 VLGSDETGTGDYFGPVTVAAVYVPADKISLVQELGVKDSKQLTDDYMRQIAPDLMKVCAY 151 Query: 82 SISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 SI + + ++ ++A + R I + Sbjct: 152 SILTLRNDKYNEIQARGYSQGKIKALLHNQALKHVLTKIAPETPQYILIDQFAERGIYYN 211 Query: 129 LPCQAFAVIKGDSISLSIA-----AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 +++ + + + A A + + + R ++ + GYP Sbjct: 212 HIKNEKEIVRQNVLFSTKAENLHVAVATASILARYAFLKEMDR------LAKVTGYP 262 >gi|257897916|ref|ZP_05677569.1| ribonuclease HIII [Enterococcus faecium Com15] gi|257835828|gb|EEV60902.1| ribonuclease HIII [Enterococcus faecium Com15] Length = 305 Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKETIPY 150 Query: 82 SISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALID-------- 121 + + ++ ++A + Sbjct: 151 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 R L + + V KG+ L++AAASII+ R + K + G G T Sbjct: 211 ARLEKNHLQEKLYFVTKGEQYHLAVAAASIIS---RASFLEELDKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|257892930|ref|ZP_05672583.1| ribonuclease HIII [Enterococcus faecium 1,231,408] gi|257829309|gb|EEV55916.1| ribonuclease HIII [Enterococcus faecium 1,231,408] Length = 305 Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKETIPY 150 Query: 82 SISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALID-------- 121 + + ++ ++A + Sbjct: 151 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 R L + + V KG+ L++AAASII+ R + K + G G T Sbjct: 211 ARLEKNHLQEKLYFVTKGEQYHLAVAAASIIS---RASFLEELDKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|257886734|ref|ZP_05666387.1| ribonuclease HIII [Enterococcus faecium 1,141,733] gi|257895300|ref|ZP_05674953.1| ribonuclease HIII [Enterococcus faecium Com12] gi|293378171|ref|ZP_06624340.1| ribonuclease HIII [Enterococcus faecium PC4.1] gi|257822788|gb|EEV49720.1| ribonuclease HIII [Enterococcus faecium 1,141,733] gi|257831865|gb|EEV58286.1| ribonuclease HIII [Enterococcus faecium Com12] gi|292643035|gb|EFF61176.1| ribonuclease HIII [Enterococcus faecium PC4.1] Length = 305 Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKETIPY 150 Query: 82 SISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALID-------- 121 + + ++ ++A + Sbjct: 151 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 R L + + V KG+ L++AAASII+ R + K + G G T Sbjct: 211 ARLEKNHLQEKLYFVTKGEQYHLAVAAASIIS---RASFLEELDKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|227552104|ref|ZP_03982153.1| ribonuclease H [Enterococcus faecium TX1330] gi|227178770|gb|EEI59742.1| ribonuclease H [Enterococcus faecium TX1330] Length = 313 Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + G+ DSK++ + +L + + + Sbjct: 99 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKETIPY 158 Query: 82 SISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALID-------- 121 + + ++ ++A + Sbjct: 159 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 218 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 R L + + V KG+ L++AAASII+ R + K + G G T Sbjct: 219 ARLEKNHLQEKLYFVTKGEQYHLAVAAASIIS---RASFLEELDKASAEAGITLPSGAGT 275 Query: 182 A 182 Sbjct: 276 K 276 >gi|311069353|ref|YP_003974276.1| ribonuclease HIII [Bacillus atrophaeus 1942] gi|310869870|gb|ADP33345.1| ribonuclease HIII [Bacillus atrophaeus 1942] Length = 313 Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 27/183 (14%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS 77 M V G DEVG G GP+ VA +D + G+ DSK + + E+ + + Sbjct: 93 GMMSVIGSDEVGTGDYFGPMTVACAYVDKSKLALMKELGVKDSKHLKDPQIIEIAKSLIK 152 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI------------ 125 + S+ +++ +K + + + N + +DG Sbjct: 153 TIPYSLLILNNEKYNKLQEKGMSQGKMKALLHNQAIGHLLKKMDGIKPEAILIDQFAEPS 212 Query: 126 --------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + + + + K + I LS+AAASIIA R + K + G Sbjct: 213 IYFKHLAGKDIVKERTYFSTKAEGIHLSVAAASIIA---RYSFLMEMDKLSREAGMVIPK 269 Query: 178 GYP 180 G Sbjct: 270 GAG 272 >gi|325294626|ref|YP_004281140.1| ribonuclease HIII [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065074|gb|ADY73081.1| ribonuclease HIII [Desulfurobacterium thermolithotrophum DSM 11699] Length = 270 Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS 82 G DE G+G GP+VVA + D N + G+ DSK +S +K ++ E+I Sbjct: 75 VGCDEAGKGEFVGPLVVACVCADKNCLRKLLDLGVKDSKALSREKILKMAEEIKKYCRGR 134 Query: 83 ISSASHQYIDKHNIHK 98 + +K Sbjct: 135 VKVIMPFQYNKLYEKY 150 >gi|293570968|ref|ZP_06682012.1| ribonuclease hiii [Enterococcus faecium E980] gi|291608952|gb|EFF38230.1| ribonuclease hiii [Enterococcus faecium E980] Length = 305 Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADVLKETIPY 150 Query: 82 SISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALID-------- 121 + + ++ ++A + Sbjct: 151 KLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 R L + + V KG+ L++AAASII+ R + K + G G T Sbjct: 211 ARLEKNHLQEKLYFVTKGEQYHLAVAAASIIS---RASFLEELDKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|229087103|ref|ZP_04219253.1| Ribonuclease HIII [Bacillus cereus Rock3-44] gi|228696171|gb|EEL49006.1| Ribonuclease HIII [Bacillus cereus Rock3-44] Length = 338 Score = 55.4 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 74/199 (37%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ + Sbjct: 119 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDVQIAEIAKQLLN 178 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ A+ + ++ + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNEMFDKGNNQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 239 TYYKYLAKQKEVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 295 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 296 KGAGKQVDIAAAKLIQKLG 314 >gi|323342859|ref|ZP_08083091.1| ribonuclease HIII [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463971|gb|EFY09165.1| ribonuclease HIII [Erysipelothrix rhusiopathiae ATCC 19414] Length = 295 Score = 55.4 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 31/192 (16%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS 82 AG DEVG G GP+ V A I++ ++ I DSK+++ K ++ + S Sbjct: 87 AGSDEVGTGDYFGPITVCACIVNESDLQRIPVAEIVDSKQMTDDKIRKIAPILKQELQYS 146 Query: 83 ISSASHQYI------DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQA--- 133 + ++ N+ KA L + I + + E A Sbjct: 147 LLILDNKKYNRVHDTMNMNVIKAKLHNQAFLNLKKRYEMPPYAIIDQFMAEKPYYNALKG 206 Query: 134 --------FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH- 184 K ++ +++A +IIA+ + K Y G H Sbjct: 207 EPEIFRGLIFETKAENKFIAVACGAIIARFG---FLDYLDKLSTKYDCVFPKGAG--AHV 261 Query: 185 ----QQVIKEKG 192 ++ ++ G Sbjct: 262 DTFGKEFVRRYG 273 >gi|56421232|ref|YP_148550.1| ribonuclease HIII [Geobacillus kaustophilus HTA426] gi|81346706|sp|Q5KWF4|RNH3_GEOKA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|56381074|dbj|BAD76982.1| ribonuclease HIII (RNase HIII) [Geobacillus kaustophilus HTA426] Length = 311 Score = 55.4 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G GP+VVAA +D ++I G+ DSK+++ + ++ I +A + Sbjct: 96 IGSDEVGTGDYFGPIVVAAAYVDRSHIAKIAALGVKDSKQLTDEAIHKIAPAIMETAPYA 155 Query: 83 ISSASHQYIDKH 94 ++ + ++ Sbjct: 156 VTVLDNAEYNRW 167 >gi|116200221|ref|XP_001225922.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51] gi|88179545|gb|EAQ87013.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51] Length = 344 Score = 55.4 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 75/233 (32%), Gaps = 59/233 (25%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKITS---- 77 G+DE GRG + GP+V L + DSK ++ R L E + + Sbjct: 63 GVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRTTHHFDDSKVLTPAVRASLMETLCTPTSD 122 Query: 78 ---SAIISISSASHQYIDKHNIHK---ATLDAIYHA------------------VENLQV 113 S ++ + S + I + A + Sbjct: 123 LYESCGWAVDALSARDIGAGMLRPGLGAYNLNAQAMDATVELIKGVYARGVNVREIYVDT 182 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD--- 170 I + A + + K DS+ S++AAS+ AKVTRD + K Sbjct: 183 IGQPAAYQAKLARVFPAAKVTVAKKADSLYPSVSAASVCAKVTRDVALETLWKARGGGGE 242 Query: 171 ------YGFDSHVGYPTA-KHQQVIKEKGPSCIH---------RLTFRPLRNL 207 + GYP+ + +K S +H R ++ +++ Sbjct: 243 EGVEETMAW--GSGYPSDGRCVTWLK----SNMHPVWGWGPECRFSWGTAKDM 289 >gi|239613574|gb|EEQ90561.1| ribonuclease HI large subunit [Ajellomyces dermatitidis ER-3] gi|327352659|gb|EGE81516.1| ribonuclease [Ajellomyces dermatitidis ATCC 18188] Length = 343 Score = 55.4 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 72/235 (30%), Gaps = 54/235 (22%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKIT--- 76 V G+DE GRG + GP+V +A L + +DSK ++ R L + Sbjct: 58 VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLCSPD 117 Query: 77 ----SSAIISISSASHQYI--------DKHNIHKATLDAIYHAVENL------------- 111 +S + S + I ++ A + Sbjct: 118 NSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVREVY 177 Query: 112 -QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD-RLMRIAHKKYP 169 I + + K DS+ S++AASI AKVTRD L Sbjct: 178 IDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRDVALEICYEALLK 237 Query: 170 DY----------GFDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 G+ GYP+ K +K G R ++ R L Sbjct: 238 QRDTVKQDSTTEGW--GSGYPSDSKCVSWLKNDMDTLFGWGYECRFSWGTARELL 290 >gi|261192900|ref|XP_002622856.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081] gi|239588991|gb|EEQ71634.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081] Length = 343 Score = 55.4 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 72/235 (30%), Gaps = 54/235 (22%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELYEKIT--- 76 V G+DE GRG + GP+V +A L + +DSK ++ R L + Sbjct: 58 VLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLCSPD 117 Query: 77 ----SSAIISISSASHQYI--------DKHNIHKATLDAIYHAVENL------------- 111 +S + S + I ++ A + Sbjct: 118 NSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVREVY 177 Query: 112 -QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD-RLMRIAHKKYP 169 I + + K DS+ S++AASI AKVTRD L Sbjct: 178 IDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRDVALEICYEALLK 237 Query: 170 DY----------GFDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 G+ GYP+ K +K G R ++ R L Sbjct: 238 QRDTVKQDSATEGW--GSGYPSDSKCVSWLKNDMDTLFGWGYECRFSWGTARELL 290 >gi|224502477|ref|ZP_03670784.1| ribonuclease HIII [Listeria monocytogenes FSL R2-561] Length = 281 Score = 55.4 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 66/210 (31%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 64 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLV 123 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------- 125 S+ + ++ + + N + + Sbjct: 124 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTY 183 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 184 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 240 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 241 AG--PHVDAVAAEIIERFGLETLAKYTKQH 268 >gi|224499100|ref|ZP_03667449.1| ribonuclease HIII [Listeria monocytogenes Finland 1988] Length = 293 Score = 55.4 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 66/210 (31%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 76 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLV 135 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------- 125 S+ + ++ + + N + + Sbjct: 136 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTY 195 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 196 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 252 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 253 AG--PHVDAVAAEIIERFGLETLAKYTKQH 280 >gi|16803268|ref|NP_464753.1| ribonuclease HIII [Listeria monocytogenes EGD-e] gi|20978687|sp|Q8Y7P5|RNH3_LISMO RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|16410644|emb|CAC99306.1| rnhC [Listeria monocytogenes EGD-e] Length = 308 Score = 55.4 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 66/210 (31%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 91 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLV 150 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------- 125 S+ + ++ + + N + + Sbjct: 151 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTY 210 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 211 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 267 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 268 AG--PHVDAVAAEIIERFGLETLAKYTKQH 295 >gi|290893289|ref|ZP_06556275.1| rnhC protein [Listeria monocytogenes FSL J2-071] gi|290557097|gb|EFD90625.1| rnhC protein [Listeria monocytogenes FSL J2-071] Length = 293 Score = 55.4 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 76 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLV 135 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDGRSIPEDLP 130 S+ + ++ + + N + A++ + ++ Sbjct: 136 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTY 195 Query: 131 CQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + F K + + LS+AAASIIA R + ++ + G G Sbjct: 196 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 252 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 253 AG--PHVDAVAAEIIERFGLETLAKYTKQH 280 >gi|226223828|ref|YP_002757935.1| ribonuclease HIII [Listeria monocytogenes Clip81459] gi|259494076|sp|C1L2D3|RNH3_LISMC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225876290|emb|CAS04999.1| Putative ribonuclease HIII [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 308 Score = 55.4 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 91 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLV 150 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDGRSIPEDLP 130 S+ + ++ + + N + A++ + ++ Sbjct: 151 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTY 210 Query: 131 CQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + F K + + LS+AAASIIA R + ++ + G G Sbjct: 211 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 267 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 268 AG--PHVDAVAAEIIERFGLETLAKYTKQH 295 >gi|254823518|ref|ZP_05228519.1| ribonuclease HIII [Listeria monocytogenes FSL J1-194] gi|254852903|ref|ZP_05242251.1| ribonuclease HIII [Listeria monocytogenes FSL R2-503] gi|254932894|ref|ZP_05266253.1| ribonuclease HIII [Listeria monocytogenes HPB2262] gi|254992865|ref|ZP_05275055.1| ribonuclease HIII [Listeria monocytogenes FSL J2-064] gi|300764377|ref|ZP_07074371.1| ribonuclease HIII [Listeria monocytogenes FSL N1-017] gi|258606238|gb|EEW18846.1| ribonuclease HIII [Listeria monocytogenes FSL R2-503] gi|293584448|gb|EFF96480.1| ribonuclease HIII [Listeria monocytogenes HPB2262] gi|293592738|gb|EFG00499.1| ribonuclease HIII [Listeria monocytogenes FSL J1-194] gi|300515029|gb|EFK42082.1| ribonuclease HIII [Listeria monocytogenes FSL N1-017] gi|328466622|gb|EGF37757.1| ribonuclease HIII [Listeria monocytogenes 1816] gi|332311613|gb|EGJ24708.1| Ribonuclease HIII [Listeria monocytogenes str. Scott A] Length = 293 Score = 55.4 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 76 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLV 135 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDGRSIPEDLP 130 S+ + ++ + + N + A++ + ++ Sbjct: 136 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTY 195 Query: 131 CQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + F K + + LS+AAASIIA R + ++ + G G Sbjct: 196 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 252 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 253 AG--PHVDAVAAEIIERFGLETLAKYTKQH 280 >gi|46907447|ref|YP_013836.1| ribonuclease HIII [Listeria monocytogenes serotype 4b str. F2365] gi|46880715|gb|AAT04013.1| putative ribonuclease HIII [Listeria monocytogenes serotype 4b str. F2365] Length = 293 Score = 55.4 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 76 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLV 135 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDGRSIPEDLP 130 S+ + ++ + + N + A++ + ++ Sbjct: 136 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTY 195 Query: 131 CQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + F K + + LS+AAASIIA R + ++ + G G Sbjct: 196 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 252 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 253 AG--PHVDAVAAEIIERFGLETLTKYTKQH 280 >gi|73917846|sp|Q720K1|RNH3_LISMF RecName: Full=Ribonuclease HIII; Short=RNase HIII Length = 308 Score = 55.4 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 91 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLV 150 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDGRSIPEDLP 130 S+ + ++ + + N + A++ + ++ Sbjct: 151 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTY 210 Query: 131 CQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + F K + + LS+AAASIIA R + ++ + G G Sbjct: 211 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 267 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 268 AG--PHVDAVAAEIIERFGLETLTKYTKQH 295 >gi|164422805|ref|XP_963372.2| hypothetical protein NCU09608 [Neurospora crassa OR74A] gi|157069829|gb|EAA34136.2| hypothetical protein NCU09608 [Neurospora crassa OR74A] Length = 381 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 12/76 (15%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDS 60 P P + N G+DE GRG + GP+V +A L +DS Sbjct: 32 PIPP------QLLADNTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDS 85 Query: 61 KKISHKKREELYEKIT 76 K ++ R L +++ Sbjct: 86 KVLTPAVRLSLMKELC 101 >gi|302927067|ref|XP_003054420.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI 77-13-4] gi|256735361|gb|EEU48707.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI 77-13-4] Length = 343 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 40/194 (20%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGIN------DSKKISHKKREELYEKIT----- 76 G+DE GRG + GP+V L + DSK ++ R +L + Sbjct: 71 GVDEAGRGPVLGPMVYGVFFLPLTISDSLLRDTHHFDDSKVLTAAVRSKLMRTLCTPGSD 130 Query: 77 --SSAIISISSASHQYIDKHNIH--------------------KATLDAIYHAVENLQVI 114 + +I + S + I +H A + + + Sbjct: 131 LHTECGWAIKALSARDITTGMLHPTTTYNLNAQALDATVDLIKAAYAAGVNVQEIYVDTV 190 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK-----YP 169 A + + K DS+ ++AAS+ AKVTRD + + Sbjct: 191 GPPASHQAKLQRFFPTAKITVTKKADSLFACVSAASVCAKVTRDATLEVLSDAKGELTEN 250 Query: 170 DYGFDSHVGYPTAK 183 G+ GY + K Sbjct: 251 GMGW--GSGYSSDK 262 >gi|229916367|ref|YP_002885013.1| ribonuclease HIII [Exiguobacterium sp. AT1b] gi|229467796|gb|ACQ69568.1| ribonuclease HIII [Exiguobacterium sp. AT1b] Length = 305 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 29/195 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG+G GP+VV A + + I G+ DSK++S + + + + ++ Sbjct: 88 WSVVGSDEVGKGDYFGPLVVVAAFVSRDQIALVKELGVKDSKQLSDPEIIRIAKDLHATI 147 Query: 80 IISISSASHQYIDKH--------NIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 ++ + + A A+ +E L P + LID + Sbjct: 148 PYQKATLHNPTYNNMQRTMTQGKMTAIAHNAALRALLEKLGQKPDAILIDQFAEKSVYYQ 207 Query: 132 Q-----------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K + + +++AAASI+A R ++ K G G Sbjct: 208 HLRAERDIVRDDVYFSTKAEGLHVAVAAASILA---RAFFLKEMDKLSKQAGLTLPKGAG 264 Query: 181 TAKHQQV---IKEKG 192 Q I+ G Sbjct: 265 AKVDQVAAQIIRRHG 279 >gi|227431089|ref|ZP_03913147.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353129|gb|EEJ43297.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 303 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 26/157 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + N+ GI DSK ++ + +++ +I + Sbjct: 89 WSVLGSDEVGAGAYFGPLTTAAVYVSQENLEWVRALGIADSKTLTDDRMKKIAPQIIAQL 148 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAV----------------------ENLQVIPRS 117 + + + ++ + + Q Sbjct: 149 PHHVVNLMPEKYNQLQPLHNVNQMKAISHNFALGKVLDKIFPITPQAILIDQFAQQSTYF 208 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 + + + KG+ LS+AAASI+A+ Sbjct: 209 NYLKNAKQQRIIHENVYFTTKGEQYHLSVAAASILAR 245 >gi|116618810|ref|YP_819181.1| ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122270990|sp|Q03VG4|RNH3_LEUMM RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|116097657|gb|ABJ62808.1| Ribonuclease HIII [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 303 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 26/157 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + N+ GI DSK ++ + +++ +I + Sbjct: 89 WSVLGSDEVGAGAYFGPLTTAAVYVSQENLEWVRALGIADSKTLTDDRMKKIAPQIIAKL 148 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAV----------------------ENLQVIPRS 117 + + + ++ + + Q Sbjct: 149 PHHVVNLMPEKYNQLQPLHNVNQMKAISHNFALGKVLDKISPITPQAILIDQFAQQSTYF 208 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAK 154 + + + KG+ LS+AAASI+A+ Sbjct: 209 NYLKNAKQQRIIHENVYFTTKGEQYHLSVAAASILAR 245 >gi|315282003|ref|ZP_07870510.1| ribonuclease hiii [Listeria marthii FSL S4-120] gi|313614348|gb|EFR87985.1| ribonuclease hiii [Listeria marthii FSL S4-120] Length = 293 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 76 KNVVGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIV 135 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP--------------RSALIDGRSI 125 S+ + ++ + + N + + + Sbjct: 136 PHSVLLCPNPKYNELQQRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTY 195 Query: 126 PEDLPCQ-------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 L + F K + + LS+AAASIIA R + ++ + G G Sbjct: 196 YRYLAQEPSIVREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 252 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 253 AG--PHVDAVAAEIIERFGMETLAKYTKQH 280 >gi|228999329|ref|ZP_04158909.1| Ribonuclease HIII [Bacillus mycoides Rock3-17] gi|228760526|gb|EEM09492.1| Ribonuclease HIII [Bacillus mycoides Rock3-17] Length = 338 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 74/199 (37%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ + Sbjct: 119 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLN 178 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ A+ + ++ + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNELFEKGNNQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 239 TYYKYLTKQKEVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 295 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 296 KGAGKQVDIAAAKLIQKLG 314 >gi|229006884|ref|ZP_04164516.1| Ribonuclease HIII [Bacillus mycoides Rock1-4] gi|228754377|gb|EEM03790.1| Ribonuclease HIII [Bacillus mycoides Rock1-4] Length = 333 Score = 54.6 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 74/199 (37%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ + Sbjct: 114 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLN 173 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ A+ + ++ + ++ + D Sbjct: 174 VVPYSSLVLHNEKYNELFEKGNNQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPD 233 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 234 TYYKYLTKQKEVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 290 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 291 KGAGKQVDIAAAKLIQKLG 309 >gi|314938144|ref|ZP_07845449.1| ribonuclease HIII [Enterococcus faecium TX0133a04] gi|314943815|ref|ZP_07850550.1| ribonuclease HIII [Enterococcus faecium TX0133C] gi|314949774|ref|ZP_07853084.1| ribonuclease HIII [Enterococcus faecium TX0082] gi|314951182|ref|ZP_07854240.1| ribonuclease HIII [Enterococcus faecium TX0133A] gi|314994413|ref|ZP_07859697.1| ribonuclease HIII [Enterococcus faecium TX0133B] gi|314995609|ref|ZP_07860703.1| ribonuclease HIII [Enterococcus faecium TX0133a01] gi|313590197|gb|EFR69042.1| ribonuclease HIII [Enterococcus faecium TX0133a01] gi|313591185|gb|EFR70030.1| ribonuclease HIII [Enterococcus faecium TX0133B] gi|313596661|gb|EFR75506.1| ribonuclease HIII [Enterococcus faecium TX0133A] gi|313597539|gb|EFR76384.1| ribonuclease HIII [Enterococcus faecium TX0133C] gi|313642491|gb|EFS07071.1| ribonuclease HIII [Enterococcus faecium TX0133a04] gi|313643847|gb|EFS08427.1| ribonuclease HIII [Enterococcus faecium TX0082] Length = 313 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + G+ DSK++ + +L + + + Sbjct: 99 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 158 Query: 82 SISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + S + ++ ++A + + + Sbjct: 159 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEKPEAILIDQFTPEANFKKY 218 Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + V KG+ L++AAASII+ R + HK + G G T Sbjct: 219 ARLEKNQLQEKLYFVTKGEQYHLAVAAASIIS---RASFLEELHKASAEAGITLPSGAGT 275 Query: 182 A 182 Sbjct: 276 K 276 >gi|69245129|ref|ZP_00603253.1| Ribonuclease HIII [Enterococcus faecium DO] gi|257879657|ref|ZP_05659310.1| ribonuclease HIII [Enterococcus faecium 1,230,933] gi|257890323|ref|ZP_05669976.1| ribonuclease HIII [Enterococcus faecium 1,231,410] gi|258614464|ref|ZP_05712234.1| ribonuclease HIII [Enterococcus faecium DO] gi|260559681|ref|ZP_05831861.1| ribonuclease HIII [Enterococcus faecium C68] gi|293560083|ref|ZP_06676587.1| ribonuclease hiii [Enterococcus faecium E1162] gi|294614400|ref|ZP_06694316.1| ribonuclease hiii [Enterococcus faecium E1636] gi|294617524|ref|ZP_06697154.1| ribonuclease hiii [Enterococcus faecium E1679] gi|68195972|gb|EAN10405.1| Ribonuclease HIII [Enterococcus faecium DO] gi|257813885|gb|EEV42643.1| ribonuclease HIII [Enterococcus faecium 1,230,933] gi|257826683|gb|EEV53309.1| ribonuclease HIII [Enterococcus faecium 1,231,410] gi|260074349|gb|EEW62671.1| ribonuclease HIII [Enterococcus faecium C68] gi|291592708|gb|EFF24301.1| ribonuclease hiii [Enterococcus faecium E1636] gi|291596130|gb|EFF27393.1| ribonuclease hiii [Enterococcus faecium E1679] gi|291605950|gb|EFF35380.1| ribonuclease hiii [Enterococcus faecium E1162] Length = 305 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150 Query: 82 SISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + S + ++ ++A + + + Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEKPEAILIDQFTPEANFKKY 210 Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + V KG+ L++AAASII+ R + HK + G G T Sbjct: 211 ARLEKNQLQEKLYFVTKGEQYHLAVAAASIIS---RASFLEELHKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|269115105|ref|YP_003302868.1| ribonuclease HII [Mycoplasma hominis] gi|268322730|emb|CAX37465.1| Ribonuclease HII [Mycoplasma hominis ATCC 23114] Length = 232 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 4/116 (3%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKI 75 KN+ + G+DE G G PV+ A + +NI G+ DSKK+S K+ E++ +I Sbjct: 2 NKNLDELIGVDETGVGDYFSPVISVACYIPKDNIEKLKQIGVKDSKKLSDKRIIEIFNQI 61 Query: 76 TSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 + + S +K + I + + + + ++ Sbjct: 62 ENLVYYQKTCLSQSGYNKLIDAGINNNEIKTLIHSNSINILTKKLNQNIDVFIDQY 117 >gi|217964706|ref|YP_002350384.1| ribonuclease hiii [Listeria monocytogenes HCC23] gi|217333976|gb|ACK39770.1| ribonuclease hiii [Listeria monocytogenes HCC23] gi|307570733|emb|CAR83912.1| rnhC [Listeria monocytogenes L99] Length = 293 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 66/210 (31%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D IP G+ DSK + + + EKI Sbjct: 76 KNVIGSDEVGTGDFFGPITVCAAYVDAEMIPLLKELGVKDSKAMKDPEICRIAEKIMPLV 135 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------- 125 S+ + ++ + + N + + Sbjct: 136 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLTPIKPEAILIDQFAEKNTY 195 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 196 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 252 Query: 179 YPTAKHQQV-----IKEKG------PSCIH 197 H I+ G + H Sbjct: 253 AG--PHVDAVAAEIIERFGLETLAKYTKQH 280 >gi|254751206|ref|ZP_05203245.1| ribonuclease HII [Bacillus anthracis str. Vollum] Length = 32 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 18/31 (58%) Query: 177 VGYPTAKHQQVIKEKGPSCIHRLTFRPLRNL 207 +GY +H + I+ G HR +F P++++ Sbjct: 1 MGYGKKQHLEAIEAHGVLEEHRKSFAPIKDM 31 >gi|228993279|ref|ZP_04153195.1| Ribonuclease HIII [Bacillus pseudomycoides DSM 12442] gi|228766347|gb|EEM14990.1| Ribonuclease HIII [Bacillus pseudomycoides DSM 12442] Length = 333 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 33/204 (16%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ S Sbjct: 114 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLS 173 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ A+ + ++ + ++ + D Sbjct: 174 VVPYSSLVLHNEKYNELFEKGNNQGKLKALLHNKALTNLLKKIAPTKPEGILIDQFTQPD 233 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 234 TYYKYLTKQKEVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 290 Query: 177 VGYPTAKHQQV---IKEKGPSCIH 197 G I++ G H Sbjct: 291 KGAGKQVDIAAAKLIQKLG--KEH 312 >gi|257882653|ref|ZP_05662306.1| ribonuclease HIII [Enterococcus faecium 1,231,502] gi|257883962|ref|ZP_05663615.1| ribonuclease HIII [Enterococcus faecium 1,231,501] gi|293568791|ref|ZP_06680105.1| ribonuclease hiii [Enterococcus faecium E1071] gi|294622759|ref|ZP_06701714.1| ribonuclease hiii [Enterococcus faecium U0317] gi|257818311|gb|EEV45639.1| ribonuclease HIII [Enterococcus faecium 1,231,502] gi|257819800|gb|EEV46948.1| ribonuclease HIII [Enterococcus faecium 1,231,501] gi|291588508|gb|EFF20342.1| ribonuclease hiii [Enterococcus faecium E1071] gi|291597810|gb|EFF28947.1| ribonuclease hiii [Enterococcus faecium U0317] Length = 305 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150 Query: 82 SISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + S + ++ ++A + + + Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIEPEKPEAILIDQFTPEANFKKY 210 Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + V KG+ L++AAASII+ R + K + G G T Sbjct: 211 ARLEKNQLQEKLYFVTKGEQYHLAVAAASIIS---RASFLEELDKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|293553123|ref|ZP_06673761.1| ribonuclease hiii [Enterococcus faecium E1039] gi|291602714|gb|EFF32928.1| ribonuclease hiii [Enterococcus faecium E1039] Length = 305 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + G+ DSK+++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELTDSQIIQLADILKKTIPY 150 Query: 82 SISSASHQYIDKHNIHKATLDAI--------------------YHAVENLQVIPRSALID 121 + S + ++ + + + + Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQTIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 R L + + V KG+ L++AAASII+ R + K + G G T Sbjct: 211 ARLEKNQLQEKLYFVTKGEQYHLAVAAASIIS---RASFLEELDKASAEAGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|313678720|ref|YP_004056460.1| ribonuclease HIII [Mycoplasma bovis PG45] gi|312950718|gb|ADR25313.1| ribonuclease HIII [Mycoplasma bovis PG45] Length = 238 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF 55 ++E+ + E + G+DEVG G GP+ A+ +D N+ Sbjct: 5 DLDVESSLLEN--KSIIGVDEVGVGDYFGPLCACAVFIDAQNVNK 47 >gi|329766419|ref|ZP_08257963.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137018|gb|EGG41310.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1] Length = 62 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 4/51 (7%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELY 72 + G+D+ GRG++ GP+V+A I L ++ G+ DSK+++ K REELY Sbjct: 10 ICGVDDAGRGSMLGPLVIAGISLKKSDVSKLKLLGVKDSKQLTPKLREELY 60 >gi|261208746|ref|ZP_05923183.1| ribonuclease HIII [Enterococcus faecium TC 6] gi|289565570|ref|ZP_06446017.1| ribonuclease HIII [Enterococcus faecium D344SRF] gi|260077248|gb|EEW64968.1| ribonuclease HIII [Enterococcus faecium TC 6] gi|289162652|gb|EFD10505.1| ribonuclease HIII [Enterococcus faecium D344SRF] Length = 305 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 27/181 (14%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + + G+ DSK++ + +L + + + Sbjct: 91 VLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQLADILKKTIPY 150 Query: 82 SISSASHQYIDKHN------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 + S + ++ ++A + + + Sbjct: 151 KLLVLSPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAILIDQFTPEANFKKY 210 Query: 130 --------PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + V KG+ L++AAASII+ R + K + G G T Sbjct: 211 ARLEKNQLQEKLYFVTKGEQYHLAVAAASIIS---RASFLEELDKASAESGITLPSGAGT 267 Query: 182 A 182 Sbjct: 268 K 268 >gi|295706825|ref|YP_003599900.1| ribonuclease HIII [Bacillus megaterium DSM 319] gi|294804484|gb|ADF41550.1| ribonuclease HIII [Bacillus megaterium DSM 319] Length = 304 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 31/196 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V A + +P G+ DSK+++ K E+ +++ SS Sbjct: 89 VIGSDEVGTGDYFGPMTVVAAYVQKEQLPLLKELGVRDSKELTDAKIIEIAKQLVSSIPY 148 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVEN---------------------LQVIPRSALI 120 S+ ++ + + + + N V + Sbjct: 149 SLLVLHNEKYNAFQEKGMSQGKMKALLHNKALSNVLKKLDPEKPDAILIDQFVEKNTYYK 208 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 E + F KG+S+ LS+AAASIIA R ++ G G Sbjct: 209 HVVKEKEIIKENVFFSTKGESVHLSVAAASIIA---RYAFLKQMDLLTEKTGMVIPRGAG 265 Query: 181 TAKHQQV---IKEKGP 193 IK+ G Sbjct: 266 AQVDIAAAKIIKKHGV 281 >gi|46446313|ref|YP_007678.1| ribonuclease HIII [Candidatus Protochlamydia amoebophila UWE25] gi|73917847|sp|Q6MDE6|RNH3_PARUW RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|46399954|emb|CAF23403.1| putative ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25] Length = 301 Score = 54.2 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 71/215 (33%), Gaps = 36/215 (16%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSS 78 + P GIDE G+G GP+ +A + + N G+ DSK +S K +L +I + Sbjct: 89 LTPHIGIDESGKGDFFGPLCIAGVYIQANQFSKLQALGVKDSKTLSDKTIRQLASQIKNL 148 Query: 79 AIISISSASHQYIDKHNIH--KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF-- 134 + I + ++ + ++ + + + + + Sbjct: 149 CLYHIVKINPAKYNEIYQDFKNLNHLLAWGHATTIEQLILQSGCQTVIVDQFADEKVVLL 208 Query: 135 -----------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 L++AAASI+A R + + + G ++ Sbjct: 209 ALKRKKLDVNLTQRHRAEDDLAVAAASILA---RQAFIDGLEQLSKEIQIPLPKG-SSSA 264 Query: 184 HQQV----IKEKG------PSCIHRLTFRPLRNLS 208 Q+ +++ G H F+ L + Sbjct: 265 TQKAGKEVLRKWGEERLRSICKQH---FKTLDAIL 296 >gi|229105182|ref|ZP_04235831.1| Ribonuclease HIII [Bacillus cereus Rock3-28] gi|228678108|gb|EEL32336.1| Ribonuclease HIII [Bacillus cereus Rock3-28] Length = 295 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 22/181 (12%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 77 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLH 136 Query: 78 SAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGRS 124 S ++ ++ +KA + + Sbjct: 137 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPD 196 Query: 125 IPEDLPCQAFAVIKGDSISLSIA-----AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + V + + A + + + R ++ + G G Sbjct: 197 TYYKYLTKQKQVQREHVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPKGA 256 Query: 180 P 180 Sbjct: 257 G 257 >gi|302036358|ref|YP_003796680.1| ribonuclease HIII (fragment) [Candidatus Nitrospira defluvii] gi|300604422|emb|CBK40754.1| Ribonuclease HIII (fragment) [Candidatus Nitrospira defluvii] Length = 219 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 27 AGIDEVGRGALAGPVVVAAI----ILDPNNIPFGINDSKKISHKKREELYEKITSSAIIS 82 GIDE G+G GP+V+AA+ L+ + + DSKKIS + E+ I S Sbjct: 13 IGIDESGKGDYFGPLVIAAVFVTPALEQDLALMQVRDSKKISDGRILEMAPDIRLLCPHS 72 Query: 83 ISSASHQYIDKHN 95 + + Q ++ Sbjct: 73 LVAIGPQRYNELY 85 >gi|293363602|ref|ZP_06610358.1| ribonuclease HII [Mycoplasma alligatoris A21JP2] gi|292552951|gb|EFF41705.1| ribonuclease HII [Mycoplasma alligatoris A21JP2] Length = 245 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 5/94 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREEL-YEKITSSAI 80 + G+DE G G GP+V AA+ + N G+ DSK I ++K+ +I S Sbjct: 29 IIGVDETGVGDYFGPLVTAAVFIPNNLLEYFKNLGVKDSKLIKNEKQIHYLANEIKSKCY 88 Query: 81 ISISSASHQYIDKHNIHKATLDAIYHAVENLQVI 114 S+ +K + + + + + + Sbjct: 89 YKTYVLSNSGYNKIDNNYKNIHKLKFFAHSHAIN 122 >gi|116872599|ref|YP_849380.1| ribonuclease HIII [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741477|emb|CAK20601.1| ribonuclease HIII [Listeria welshimeri serovar 6b str. SLCC5334] Length = 293 Score = 53.8 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 69/210 (32%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 76 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIV 135 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------- 125 S+ + ++ + + N + + R Sbjct: 136 PHSVLLCPNPKYNELQKKGMNQGQMKALLHNRAIENVLKKLAPRKPEAILIDQFAEKNTY 195 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 196 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 252 Query: 179 YPTAKHQ-----QVIKEKG------PSCIH 197 H ++I+ G + H Sbjct: 253 AG--PHVDVVAAEIIERFGLETLAKYTKQH 280 >gi|312210372|emb|CBX90459.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans] Length = 357 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 79/251 (31%), Gaps = 69/251 (27%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP------FGINDSKKISHKKREELYEKITS 77 V G+DE GRG + GP+V A L + NDSK ++ R L + + Sbjct: 58 EVVLGVDEAGRGPVLGPMVYALFYLPLSLHHSLLADTHHFNDSKVLTADFRTSLMRTLCT 117 Query: 78 -------SAIISISSASHQYIDKHNIHKATLDAIYHAVE-------------------NL 111 +A + S S Q I H + + + A++ + Sbjct: 118 PSTDLHAAAGWATRSLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLEKGVNVTDIYI 177 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 I + + + + K DS+ ++AAS+ AKVTRD Y Y Sbjct: 178 DTIGKPEIYQKKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDA---ALEVGYGKY 234 Query: 172 GFDS----------------------------HVGYPT-AKHQQVIKE-----KGPSCIH 197 GYP+ + Q +K+ G Sbjct: 235 HDHDHSHSQSSSTDVLNAQTQTQDPVKATVSWGSGYPSDPRTQAWLKQNMDPVFGWGTEC 294 Query: 198 RLTFRPLRNLS 208 R ++ + L Sbjct: 295 RHSWGTAKELL 305 >gi|229163546|ref|ZP_04291496.1| Ribonuclease HIII [Bacillus cereus R309803] gi|228619928|gb|EEK76804.1| Ribonuclease HIII [Bacillus cereus R309803] Length = 332 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 114 GTMSIVGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 233 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 234 TYYKYLAKQKEVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 290 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 291 KGAGKQVDIAAAKLIQKLG 309 >gi|294501477|ref|YP_003565177.1| ribonuclease HIII [Bacillus megaterium QM B1551] gi|294351414|gb|ADE71743.1| ribonuclease HIII [Bacillus megaterium QM B1551] Length = 304 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 31/196 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V A + +P G+ DSK+++ K E+ +++ S Sbjct: 89 VIGSDEVGTGDYFGPMTVVAAYVQKEQLPLLKELGVRDSKELTDAKIIEIAKQLVSFIPY 148 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVEN---------------------LQVIPRSALI 120 S+ ++ + + + + N V + Sbjct: 149 SLLVLHNEKYNAFQEKGMSQGKMKALLHNKALSNVLKKLDPEKPDAILIDQFVEKNTYYK 208 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 E + F KG+S+ LS+AAASIIA R ++ G G Sbjct: 209 HVVKEKEIIKENVFFSTKGESVHLSVAAASIIA---RYAFLKQMDLLTEKTGMVIPRGAG 265 Query: 181 TAKHQQV---IKEKGP 193 IK+ G Sbjct: 266 AQVDIAAAKIIKKHGV 281 >gi|228960825|ref|ZP_04122460.1| Ribonuclease HIII [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798847|gb|EEM45826.1| Ribonuclease HIII [Bacillus thuringiensis serovar pakistani str. T13001] Length = 332 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 233 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 234 TYYKYLAKQKQVQRENVYFTTKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 290 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 291 KGAGKQVDIAAAKLIQKLG 309 >gi|172058184|ref|YP_001814644.1| ribonuclease HIII [Exiguobacterium sibiricum 255-15] gi|229564305|sp|B1YJY9|RNH3_EXIS2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|171990705|gb|ACB61627.1| ribonuclease HIII [Exiguobacterium sibiricum 255-15] Length = 306 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 38/215 (17%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG+G GP+VV A +D G+ DSK +S + + + + Sbjct: 87 WSVVGSDEVGKGDFFGPLVVVAAYVDKTKIELVRELGVRDSKNVSDPEIRTIARDLHAVI 146 Query: 80 IISISSASH-------QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 + + + + + ++ + + P A++ + + + + Sbjct: 147 PYEYRILHNPDYNRMQRTMTQGKMTALLHNSALNGLLTRLDEPPQAILIDQFAEKAVYYK 206 Query: 133 A------------FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + K + I +++AAASI+A R ++ + G + G Sbjct: 207 HLSGETNQVKDNVYFSTKAEGIHVAVAAASILA---RAIFLKEMDQLSRQTGTEIPKGAG 263 Query: 181 TAKHQQV---IKEKGP------SCIHRLTFRPLRN 206 Q + GP + H F + Sbjct: 264 AKVDQVAASLLLRYGPERLQEWTKYH---FANTKK 295 >gi|228987805|ref|ZP_04147914.1| Ribonuclease HIII [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771853|gb|EEM20310.1| Ribonuclease HIII [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 239 TYYKYLAKQKLVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 295 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 296 KGAGKQVDIAAAKLIQKLG 314 >gi|229112020|ref|ZP_04241563.1| Ribonuclease HIII [Bacillus cereus Rock1-15] gi|228671343|gb|EEL26644.1| Ribonuclease HIII [Bacillus cereus Rock1-15] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 295 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 296 KGAGKQVDIAAAKLIQKLG 314 >gi|229129840|ref|ZP_04258806.1| Ribonuclease HIII [Bacillus cereus BDRD-Cer4] gi|228653531|gb|EEL09403.1| Ribonuclease HIII [Bacillus cereus BDRD-Cer4] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 295 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 296 KGAGKQVDIAAAKLIQKLG 314 >gi|229048264|ref|ZP_04193832.1| Ribonuclease HIII [Bacillus cereus AH676] gi|229147115|ref|ZP_04275474.1| Ribonuclease HIII [Bacillus cereus BDRD-ST24] gi|228636364|gb|EEK92835.1| Ribonuclease HIII [Bacillus cereus BDRD-ST24] gi|228722989|gb|EEL74366.1| Ribonuclease HIII [Bacillus cereus AH676] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 295 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 296 KGAGKQVDIAAAKLIQKLG 314 >gi|229158161|ref|ZP_04286229.1| Ribonuclease HIII [Bacillus cereus ATCC 4342] gi|228625323|gb|EEK82082.1| Ribonuclease HIII [Bacillus cereus ATCC 4342] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 295 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 296 KGAGKQVDIAAAKLIQKLG 314 >gi|30022631|ref|NP_834262.1| ribonuclease HIII [Bacillus cereus ATCC 14579] gi|73917842|sp|Q817J0|RNH3_BACCR RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|29898189|gb|AAP11463.1| Ribonuclease HII [Bacillus cereus ATCC 14579] Length = 311 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 212 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 269 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 270 KGAGKQVDIAAAKLIQKLG 288 >gi|289613504|emb|CBI59529.1| unnamed protein product [Sordaria macrospora] Length = 397 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 12/76 (15%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN------NIPFGINDS 60 P P + N G+DE GRG + GP+V +A L +DS Sbjct: 40 PVPP------QLLVDNTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDS 93 Query: 61 KKISHKKREELYEKIT 76 K ++ R L +++ Sbjct: 94 KVLTPAVRLSLMKELC 109 >gi|218232445|ref|YP_002369353.1| ribonuclease HIII [Bacillus cereus B4264] gi|218160402|gb|ACK60394.1| ribonuclease HIII [Bacillus cereus B4264] Length = 337 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 295 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 296 KGAGKQVDIAAAKLIQKLG 314 >gi|47213806|emb|CAF92579.1| unnamed protein product [Tetraodon nigroviridis] Length = 115 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAII 81 GIDE GRG + GP+V + DSK ++ +RE L+EK+ + Sbjct: 32 GIDEAGRGPVLGPMVYGICFCPISRKDELKDLKVADSKTLTEAEREALFEKLDEAKSY 89 >gi|295658160|ref|XP_002789642.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb01] gi|226283127|gb|EEH38693.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb01] Length = 343 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 80/235 (34%), Gaps = 54/235 (22%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNI------PFGINDSKKISHKKREELY------- 72 V G+DE GRG + GP++ +A L + +DSK ++ R L Sbjct: 58 VLGVDEAGRGPVLGPMIYSAFYLPLSLHHSLLAKEHHFDDSKVLTPAVRTNLMRLLCTPD 117 Query: 73 EKITSSAIISISSASHQ-------------YIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 + +S + S + Y AT++ I VE + V + Sbjct: 118 HSLNTSCGWGVKVLSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVKEVY 177 Query: 120 IDGRSIPEDLP---------CQAFAVIKGDSISLSIAAASIIAKVTRD-RLMRIAHKKYP 169 ID PE + K DS+ S++AAS+ AKVTRD L Sbjct: 178 IDTIGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEALVK 237 Query: 170 DY----------GFDSHVGYPTA-KHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 G+ GYP+ K +K G R ++ R L Sbjct: 238 QRGAMEQEGAADGW--GSGYPSDSKCVGWLKNDMDSLFGWGNECRFSWGTARELL 290 >gi|299783000|gb|ADJ40998.1| Ribonuclease HIII (RNase HIII) [Lactobacillus fermentum CECT 5716] Length = 301 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ AA+ + + G+ DSKK++ + L ++I ++ Sbjct: 88 WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVEN 110 ++ + + Sbjct: 148 PVTYLNLMPAAYNARMKKYNQAQLKALCHNY 178 >gi|227514539|ref|ZP_03944588.1| ribonuclease H [Lactobacillus fermentum ATCC 14931] gi|260663396|ref|ZP_05864287.1| ribonuclease HIII [Lactobacillus fermentum 28-3-CHN] gi|227087096|gb|EEI22408.1| ribonuclease H [Lactobacillus fermentum ATCC 14931] gi|260552248|gb|EEX25300.1| ribonuclease HIII [Lactobacillus fermentum 28-3-CHN] Length = 301 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ AA+ + + G+ DSKK++ + L ++I ++ Sbjct: 88 WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVEN 110 ++ + + Sbjct: 148 PVTYLNLMPAAYNARMKKYNQAQLKALCHNY 178 >gi|184155001|ref|YP_001843341.1| ribonuclease HIII [Lactobacillus fermentum IFO 3956] gi|238692957|sp|B2GB29|RNH3_LACF3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|183226345|dbj|BAG26861.1| ribonuclease HIII [Lactobacillus fermentum IFO 3956] Length = 301 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ AA+ + + G+ DSKK++ + L ++I ++ Sbjct: 88 WSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATC 147 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVEN 110 ++ + + Sbjct: 148 PVTYLNLMPAAYNARMKKYNQAQLKALCHNY 178 >gi|313624050|gb|EFR94134.1| ribonuclease hiii [Listeria innocua FSL J1-023] Length = 293 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 72/210 (34%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 76 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIV 135 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDGRSIPEDLP 130 S+ + ++ + + N + A++ + ++ Sbjct: 136 PHSVLLCPNPKYNELQQRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTY 195 Query: 131 CQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + F K + + LS+AAASIIA R + ++ + G G Sbjct: 196 YRYLAKEPSIIRDDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 252 Query: 179 YPTAKHQ-----QVIKEKG------PSCIH 197 H ++I+ G + H Sbjct: 253 AG--PHVDVVAAEIIERFGLETLAKYTKQH 280 >gi|138896261|ref|YP_001126714.1| ribonuclease HIII [Geobacillus thermodenitrificans NG80-2] gi|196250218|ref|ZP_03148912.1| ribonuclease HIII [Geobacillus sp. G11MC16] gi|134267774|gb|ABO67969.1| Ribonuclease HIII [Geobacillus thermodenitrificans NG80-2] gi|196210402|gb|EDY05167.1| ribonuclease HIII [Geobacillus sp. G11MC16] Length = 313 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREE 70 E + G DEVG G GP+VVAA +D ++ G+ DSK+++ + Sbjct: 89 EQEL---GSLSAIGSDEVGTGDYFGPIVVAAAYVDRGHLDRIAALGVKDSKQLNDETITR 145 Query: 71 LYEKITSSAIISISSASHQYIDKH 94 + I + +++ ++ ++ Sbjct: 146 IAPTIMETVPYAVTVLTNAEYNRW 169 >gi|16800260|ref|NP_470528.1| ribonuclease HIII [Listeria innocua Clip11262] gi|20978705|sp|Q92CI0|RNH3_LISIN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|16413650|emb|CAC96422.1| rnhC [Listeria innocua Clip11262] Length = 308 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 68/210 (32%), Gaps = 41/210 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 91 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIV 150 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------- 125 S+ + ++ + + N + + Sbjct: 151 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTY 210 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P + F K + + LS+AAASIIA R + ++ + G G Sbjct: 211 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 267 Query: 179 YPTAKHQ-----QVIKEKG------PSCIH 197 H ++I+ G + H Sbjct: 268 AG--PHVDVVAAEIIERFGLETLAKYTKQH 295 >gi|229099014|ref|ZP_04229949.1| Ribonuclease HIII [Bacillus cereus Rock3-29] gi|228684512|gb|EEL38455.1| Ribonuclease HIII [Bacillus cereus Rock3-29] Length = 295 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 77 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLH 136 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 137 VVPYSSLVLHNEKYNE 152 >gi|229118045|ref|ZP_04247405.1| Ribonuclease HIII [Bacillus cereus Rock1-3] gi|228665494|gb|EEL20976.1| Ribonuclease HIII [Bacillus cereus Rock1-3] Length = 295 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 +AG DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 77 GTMSIAGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLH 136 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 137 VVPYSSLVLHNEKYNE 152 >gi|282908430|ref|ZP_06316261.1| LOW QUALITY PROTEIN: ribonuclease HIII [Staphylococcus aureus subsp. aureus WW2703/97] gi|282328095|gb|EFB58377.1| LOW QUALITY PROTEIN: ribonuclease HIII [Staphylococcus aureus subsp. aureus WW2703/97] Length = 247 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 22/180 (12%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR 68 LE + + G DE G G GP+ V A + ++P G++DSKK++ K Sbjct: 69 SLEQTLMYDQFNCI-GSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKI 127 Query: 69 EELYEKITSSAIISISSASHQYID-----KHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 EL E++ + S+ + ++ + K A++N+ S+ +D Sbjct: 128 VELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYI 187 Query: 124 SIPEDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDY 171 I + + ++ I L A ++ + ++R + + Y Sbjct: 188 VIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFITYMDQISKKY 247 >gi|229013757|ref|ZP_04170885.1| Ribonuclease HIII [Bacillus mycoides DSM 2048] gi|228747426|gb|EEL97301.1| Ribonuclease HIII [Bacillus mycoides DSM 2048] Length = 312 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 22/181 (12%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 93 GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 152 Query: 78 SAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGRS 124 S ++ ++ +KA + + Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTTPEGILIDQFTQPD 212 Query: 125 IPEDLPCQAFAVIKGDSISLSIA-----AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + V + + + A + + + R ++ + G G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKKFDELSKKAGMQLPKGA 272 Query: 180 P 180 Sbjct: 273 G 273 >gi|170016688|ref|YP_001727607.1| ribonuclease H [Leuconostoc citreum KM20] gi|238688947|sp|B1MXB1|RNH3_LEUCK RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|169803545|gb|ACA82163.1| Ribonuclease H [Leuconostoc citreum KM20] Length = 308 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + N++ GI DSK ++ K ++ +I Sbjct: 93 WSVIGSDEVGAGAYFGPLTTAAVFVSKNDLDWVKALGIADSKTLTDAKMRDIAPEIIQRL 152 Query: 80 IISISSASHQYIDKHNIHK 98 + + + + H Sbjct: 153 PHHVVNLLPEKYNALQPHN 171 >gi|229135388|ref|ZP_04264177.1| Ribonuclease HIII [Bacillus cereus BDRD-ST196] gi|228648084|gb|EEL04130.1| Ribonuclease HIII [Bacillus cereus BDRD-ST196] Length = 311 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 22/181 (12%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 93 GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 152 Query: 78 SAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGRS 124 S ++ ++ +KA + + Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLTKIAPTKPEGILIDQFTQPD 212 Query: 125 IPEDLPCQAFAVIKGDSISLSIA-----AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + V + + + A + + + R ++ + G G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMQLPKGA 272 Query: 180 P 180 Sbjct: 273 G 273 >gi|196034532|ref|ZP_03101941.1| ribonuclease HIII [Bacillus cereus W] gi|228929603|ref|ZP_04092621.1| Ribonuclease HIII [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229124121|ref|ZP_04253313.1| Ribonuclease HIII [Bacillus cereus 95/8201] gi|195993074|gb|EDX57033.1| ribonuclease HIII [Bacillus cereus W] gi|228659423|gb|EEL15071.1| Ribonuclease HIII [Bacillus cereus 95/8201] gi|228829990|gb|EEM75609.1| Ribonuclease HIII [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 337 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDGRSIPED 128 S ++ ++ + + N + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 295 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 296 KGAGKQVDIAAAKLIQKLG 314 >gi|42783728|ref|NP_980975.1| ribonuclease HIII [Bacillus cereus ATCC 10987] gi|73917841|sp|Q72ZI6|RNH3_BACC1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|42739658|gb|AAS43583.1| ribonuclease HIII [Bacillus cereus ATCC 10987] Length = 311 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDGRSIPED 128 S ++ ++ + + N + ++ + D Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPD 212 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 269 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 270 KGAGKQVDIAAAKLIQKLG 288 >gi|84489361|ref|YP_447593.1| putative ribonuclease HIII [Methanosphaera stadtmanae DSM 3091] gi|84372680|gb|ABC56950.1| putative ribonuclease HIII [Methanosphaera stadtmanae DSM 3091] Length = 309 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 5/99 (5%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT 76 K + G DE G+G GP+VV A+ ++I G+ DSKK+S K+ LYEKI Sbjct: 107 KKYQYIIGSDETGKGEWYGPLVVCAVCTSNDDILKLKSIGVKDSKKLSTKEIFSLYEKIE 166 Query: 77 S-SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVI 114 + + +K + + + Sbjct: 167 KLNITYEVIVLKPFSYNKLYTKFTNENKNLNHLLAHLHY 205 >gi|229062239|ref|ZP_04199561.1| Ribonuclease HIII [Bacillus cereus AH603] gi|228717067|gb|EEL68746.1| Ribonuclease HIII [Bacillus cereus AH603] Length = 312 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 93 GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 152 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 153 VVPYSSLVLHNEKYNE 168 >gi|229169283|ref|ZP_04296994.1| Ribonuclease HIII [Bacillus cereus AH621] gi|228614178|gb|EEK71292.1| Ribonuclease HIII [Bacillus cereus AH621] Length = 295 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 77 GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 136 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 137 VVPYSSLVLHNEKYNE 152 >gi|163942287|ref|YP_001647171.1| ribonuclease HIII [Bacillus weihenstephanensis KBAB4] gi|226741380|sp|A9VJL6|RNH3_BACWK RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|163864484|gb|ABY45543.1| ribonuclease HIII [Bacillus weihenstephanensis KBAB4] Length = 312 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + E+ +++ Sbjct: 93 GTMSILGSDEVGTGDYFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDAQIAEIAKQLLH 152 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 153 VVPYSSLVLHNEKYNE 168 >gi|228903073|ref|ZP_04067210.1| Ribonuclease HIII [Bacillus thuringiensis IBL 4222] gi|228856559|gb|EEN01082.1| Ribonuclease HIII [Bacillus thuringiensis IBL 4222] Length = 337 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKSLNDDQITAIAKQLLHVVPY 182 Query: 82 SISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 S ++ ++ AI + + + ++ + D + Sbjct: 183 SSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTYYK 242 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + KG+S+ L++AAASI+A R ++ + G G Sbjct: 243 YLTKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLPKGAG 299 Query: 181 TAKHQQV---IKEKG 192 I++ G Sbjct: 300 KQVDIAAAKLIQKLG 314 >gi|229032202|ref|ZP_04188175.1| Ribonuclease HIII [Bacillus cereus AH1271] gi|228728982|gb|EEL79985.1| Ribonuclease HIII [Bacillus cereus AH1271] Length = 337 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 69/199 (34%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKKIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDGRSIPED 128 S ++ ++ + + N + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 295 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 296 KGAGKQVDIAAAKLIQKLG 314 >gi|223984561|ref|ZP_03634691.1| hypothetical protein HOLDEFILI_01986 [Holdemania filiformis DSM 12042] gi|223963466|gb|EEF67848.1| hypothetical protein HOLDEFILI_01986 [Holdemania filiformis DSM 12042] Length = 300 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 22/188 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS 82 AG DEVG G G V V A ++ + +NDSK+I+ + + + S Sbjct: 91 AGSDEVGTGDYFGSVCVCACAVEQQDLAWLQELKVNDSKQINDEVILQTAPLLMERLAYS 150 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVI---------------PRSALIDGRSIPE 127 + ++ + V + ++ + Sbjct: 151 LLILPPVKYNQIHSQCNMNQIKAILHNQAYVHLKRKRGSLPQAAIVDQFTPEVNYYRYCQ 210 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQV 187 + A + + + R ++ + G + Q Sbjct: 211 GQKEVVRGLHFETKAESHYPAVACASMIARCAFLKAWDAMEKQWDMSFTKGAGSVVDQDG 270 Query: 188 ---IKEKG 192 +K+ G Sbjct: 271 AAFVKKHG 278 >gi|228954825|ref|ZP_04116845.1| Ribonuclease HIII [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804814|gb|EEM51413.1| Ribonuclease HIII [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 337 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQIIAIAKQLLHVVPY 182 Query: 82 SISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 S ++ ++ AI + + + ++ + D + Sbjct: 183 SSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYYK 242 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + KG+S+ L++AAASI+A R ++ + G G Sbjct: 243 YLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLPKGAG 299 Query: 181 TAKHQQV---IKEKG 192 I++ G Sbjct: 300 KQVDIAAAKLIQKLG 314 >gi|300173789|ref|YP_003772955.1| ribonuclease hiii [Leuconostoc gasicomitatum LMG 18811] gi|299888168|emb|CBL92136.1| ribonuclease hiii [Leuconostoc gasicomitatum LMG 18811] Length = 309 Score = 52.7 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + N GI DSK ++ K ++ I + Sbjct: 94 WSVLGSDEVGAGAYFGPLTTAAVFVAKENISWVRQLGIADSKTLTDAKMRQIAPDIIAKL 153 Query: 80 IISISSASHQYID 92 + + + + Sbjct: 154 PHHVVNLMPEKYN 166 >gi|229543611|ref|ZP_04432671.1| ribonuclease HIII [Bacillus coagulans 36D1] gi|229328031|gb|EEN93706.1| ribonuclease HIII [Bacillus coagulans 36D1] Length = 311 Score = 52.7 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 34/214 (15%) Query: 4 NSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGIND 59 + P P V G DEVG G GP+ V + ++ +P G+ D Sbjct: 82 SGNPLPPDI---------GELSVIGSDEVGTGDFFGPMTVVSCYVEKKQLPLLKELGVKD 132 Query: 60 SKKISHKKREELYEKITSSAIISISSASHQYIDKHN-------------IHKATLDAIYH 106 SK ++ + L +++ + S+ ++ ++ ++A + Sbjct: 133 SKGLTDSQIAGLAKELLTFVPYSLLILPNEKYNRLQQSGMSQGKIKALLHNRALYNTAQK 192 Query: 107 AVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA-----AASIIAKVTRDRLM 161 S V++ + A + + + R + Sbjct: 193 IAPAKPDAILIDQFAEASTYYRYLQNEKIVMRDGVYFSTKGESVHLAVAAASILARYAFV 252 Query: 162 RIAHKKYPDYGFDSHVGYPTAKHQQV---IKEKG 192 R K + GF G + IKEKG Sbjct: 253 REFEKLSKEAGFVLPKGAGAQVDRAAARLIKEKG 286 >gi|255521227|ref|ZP_05388464.1| ribonuclease HIII [Listeria monocytogenes FSL J1-175] Length = 260 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 30/190 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A +D +P G+ DSK + + + EKI Sbjct: 76 KNVIGSDEVGTGDFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLV 135 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP---------RSALIDGRSIPEDLP 130 S+ + ++ + + N + A++ + ++ Sbjct: 136 PHSVLLCPNPKYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTY 195 Query: 131 CQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + F K + + LS+AAASIIA R + ++ + G G Sbjct: 196 YRYLAKEPSIIREDVFFATKAEGLHLSVAAASIIA---RYKFVQAFDAMSKEVGIPLPKG 252 Query: 179 YPTAKHQQVI 188 H + Sbjct: 253 AG--PHVDAV 260 >gi|330444312|ref|YP_004377298.1| ribonuclease HIII [Chlamydophila pecorum E58] gi|328807422|gb|AEB41595.1| ribonuclease HIII [Chlamydophila pecorum E58] Length = 298 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 61/220 (27%), Gaps = 40/220 (18%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN-----IPFGINDSKKISHKKREELYE 73 E+N+ P G+DE G+G GP+ +A + I DSK + L + Sbjct: 81 LEQNLRPRIGVDESGKGDFFGPLCIAGVYAPDKRILQELYKTKIQDSKTLRDTTILSLAK 140 Query: 74 KITSSAIISISSASHQYIDKHNIH-----------KATLDAIYHAVENLQVIPRSALIDG 122 I S + + + ++ AT+ +V S Sbjct: 141 TIRSLCTYDVMTLYPEKYNELYGKFRNLNALLAWGHATVIDNLAPCPAQEVFAISDQFAS 200 Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT---RDRLMRIAHKKYPDYGFDSHVG- 178 + A ++A + R+ + K Y G Sbjct: 201 SEQLLLEALKKKNSEILLIQKTKAEADIVVAAASILAREAFITSMKKLEALYKVQLPKGV 260 Query: 179 --------------YPTAKHQQVIKEKGPSCIHRLTFRPL 204 Y ++ +++ +H T+ + Sbjct: 261 SVRVLETGKHIVHSYG----KEALRKL--CKMHFKTYAEV 294 >gi|301056063|ref|YP_003794274.1| ribonuclease HIII [Bacillus anthracis CI] gi|300378232|gb|ADK07136.1| ribonuclease HIII [Bacillus cereus biovar anthracis str. CI] Length = 311 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPDGVLIDQFTQPD 212 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ ++ G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFNELSKKAGMPLP 269 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 270 KGAGKQVDIAAAKLIQKLG 288 >gi|229192756|ref|ZP_04319714.1| Ribonuclease HIII [Bacillus cereus ATCC 10876] gi|228590595|gb|EEK48456.1| Ribonuclease HIII [Bacillus cereus ATCC 10876] Length = 332 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 82 SISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 S ++ ++ AI + + + ++ + D + Sbjct: 178 SSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYYK 237 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + KG+S+ L++AAASI+A R ++ + G G Sbjct: 238 YLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELIKKAGMPLPKGAG 294 Query: 181 TAKHQQV---IKEKG 192 I++ G Sbjct: 295 KQVDIAAAKLIQKLG 309 >gi|326942340|gb|AEA18236.1| ribonuclease HIII [Bacillus thuringiensis serovar chinensis CT-43] Length = 311 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 156 Query: 82 SISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 S ++ ++ AI + + + ++ + D + Sbjct: 157 SSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYYK 216 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + KG+S+ L++AAASI+A R ++ + G G Sbjct: 217 YLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLPKGAG 273 Query: 181 TAKHQQV---IKEKG 192 I++ G Sbjct: 274 KQVDIAAAKLIQKLG 288 >gi|228967653|ref|ZP_04128674.1| Ribonuclease HIII [Bacillus thuringiensis serovar sotto str. T04001] gi|228792029|gb|EEM39610.1| Ribonuclease HIII [Bacillus thuringiensis serovar sotto str. T04001] Length = 332 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 82 SISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 S ++ ++ AI + + + ++ + D + Sbjct: 178 SSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTYYK 237 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + KG+S+ L++AAASI+A R ++ + G G Sbjct: 238 YLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLPKGAG 294 Query: 181 TAKHQQV---IKEKG 192 I++ G Sbjct: 295 KQVDIAAAKLIQKLG 309 >gi|228974659|ref|ZP_04135225.1| Ribonuclease HIII [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228785062|gb|EEM33075.1| Ribonuclease HIII [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 337 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 82 SISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 S ++ ++ AI + + + ++ + D + Sbjct: 183 SSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYYK 242 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + KG+S+ L++AAASI+A R ++ + G G Sbjct: 243 YLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLPKGAG 299 Query: 181 TAKHQQV---IKEKG 192 I++ G Sbjct: 300 KQVDIAAAKLIQKLG 314 >gi|228941735|ref|ZP_04104282.1| Ribonuclease HIII [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228981253|ref|ZP_04141553.1| Ribonuclease HIII [Bacillus thuringiensis Bt407] gi|228778453|gb|EEM26720.1| Ribonuclease HIII [Bacillus thuringiensis Bt407] gi|228817947|gb|EEM64025.1| Ribonuclease HIII [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 332 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 82 SISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 S ++ ++ AI + + + ++ + D + Sbjct: 178 SSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYYK 237 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + KG+S+ L++AAASI+A R ++ + G G Sbjct: 238 YLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLPKGAG 294 Query: 181 TAKHQQV---IKEKG 192 I++ G Sbjct: 295 KQVDIAAAKLIQKLG 309 >gi|229072058|ref|ZP_04205267.1| Ribonuclease HIII [Bacillus cereus F65185] gi|228710992|gb|EEL62958.1| Ribonuclease HIII [Bacillus cereus F65185] Length = 337 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 82 SISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 S ++ ++ AI + + + ++ + D + Sbjct: 183 SSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYYK 242 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + KG+S+ L++AAASI+A R ++ + G G Sbjct: 243 YLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLPKGAG 299 Query: 181 TAKHQQV---IKEKG 192 I++ G Sbjct: 300 KQVDIAAAKLIQKLG 314 >gi|229081809|ref|ZP_04214301.1| Ribonuclease HIII [Bacillus cereus Rock4-2] gi|228701397|gb|EEL53891.1| Ribonuclease HIII [Bacillus cereus Rock4-2] Length = 332 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 82 SISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 S ++ ++ AI + + + ++ + D + Sbjct: 178 SSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYYK 237 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + KG+S+ L++AAASI+A R ++ + G G Sbjct: 238 YLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLPKGAG 294 Query: 181 TAKHQQV---IKEKG 192 I++ G Sbjct: 295 KQVDIAAAKLIQKLG 309 >gi|229152752|ref|ZP_04280936.1| Ribonuclease HIII [Bacillus cereus m1550] gi|228630730|gb|EEK87375.1| Ribonuclease HIII [Bacillus cereus m1550] Length = 337 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 66/184 (35%), Gaps = 28/184 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ + G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLP 295 Query: 177 VGYP 180 G Sbjct: 296 KGAG 299 >gi|229180875|ref|ZP_04308210.1| Ribonuclease HIII [Bacillus cereus 172560W] gi|228602432|gb|EEK59918.1| Ribonuclease HIII [Bacillus cereus 172560W] Length = 337 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 82 SISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 S ++ ++ AI + + + ++ + D + Sbjct: 183 SSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYYK 242 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + KG+S+ L++AAASI+A R ++ + G G Sbjct: 243 YLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLPKGAG 299 Query: 181 TAKHQQV---IKEKG 192 I++ G Sbjct: 300 KQVDIAAAKLIQKLG 314 >gi|229141283|ref|ZP_04269821.1| Ribonuclease HIII [Bacillus cereus BDRD-ST26] gi|229198705|ref|ZP_04325404.1| Ribonuclease HIII [Bacillus cereus m1293] gi|228584781|gb|EEK42900.1| Ribonuclease HIII [Bacillus cereus m1293] gi|228642064|gb|EEK98357.1| Ribonuclease HIII [Bacillus cereus BDRD-ST26] Length = 332 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 73/199 (36%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + I ++ + D Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPD 233 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ ++ G Sbjct: 234 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFNELSKKAGMPLP 290 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 291 KGAGKQVDIAAAKLIQKLG 309 >gi|222098020|ref|YP_002532077.1| ribonuclease hiii [Bacillus cereus Q1] gi|221242078|gb|ACM14788.1| ribonuclease HII [Bacillus cereus Q1] Length = 276 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 73/199 (36%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 58 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 117 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + I ++ + D Sbjct: 118 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPD 177 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ ++ G Sbjct: 178 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFNELSKKAGMPLP 234 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 235 KGAGKQVDIAAAKLIQKLG 253 >gi|218899710|ref|YP_002448121.1| ribonuclease HIII [Bacillus cereus G9842] gi|218544745|gb|ACK97139.1| ribonuclease HIII [Bacillus cereus G9842] Length = 332 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 82 SISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 S ++ ++ AI + + + ++ + D + Sbjct: 178 SSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLGKMAPTKPEGVLIDQFTQPDTYYK 237 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + KG+S+ L++AAASI+A R ++ + G G Sbjct: 238 YLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLPKGAG 294 Query: 181 TAKHQQV---IKEKG 192 I++ G Sbjct: 295 KQVDIAAAKLIQKLG 309 >gi|206969869|ref|ZP_03230823.1| ribonuclease HIII [Bacillus cereus AH1134] gi|206735557|gb|EDZ52725.1| ribonuclease HIII [Bacillus cereus AH1134] Length = 311 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 97 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 156 Query: 82 SISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQ 132 S ++ ++ AI + + + ++ + D + Sbjct: 157 SSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYYK 216 Query: 133 ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + KG+S+ L++AAASI+A R ++ + G G Sbjct: 217 YLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFDELSKKAGMPLPKGAG 273 Query: 181 TAKHQQV---IKEKG 192 I++ G Sbjct: 274 KQVDIAAAKLIQKLG 288 >gi|206977745|ref|ZP_03238636.1| ribonuclease HIII [Bacillus cereus H3081.97] gi|217962037|ref|YP_002340607.1| ribonuclease HIII [Bacillus cereus AH187] gi|226736827|sp|B7HRJ7|RNH3_BACC7 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|206744046|gb|EDZ55462.1| ribonuclease HIII [Bacillus cereus H3081.97] gi|217067519|gb|ACJ81769.1| ribonuclease HIII [Bacillus cereus AH187] Length = 311 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 73/199 (36%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + I ++ + D Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPIKPEGVLIDQFTQPD 212 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ ++ G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFNELSKKAGMPLP 269 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 270 KGAGKQVDIAAAKLIQKLG 288 >gi|324328447|gb|ADY23707.1| ribonuclease HIII [Bacillus thuringiensis serovar finitimus YBT-020] Length = 311 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 212 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ ++ G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFNELSKKAGMPLP 269 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 270 KGAGKQVDIAAAKLIQKLG 288 >gi|228910380|ref|ZP_04074195.1| Ribonuclease HIII [Bacillus thuringiensis IBL 200] gi|228849146|gb|EEM93985.1| Ribonuclease HIII [Bacillus thuringiensis IBL 200] Length = 332 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 174 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 233 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ ++ G Sbjct: 234 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFNELSKKAGMPLP 290 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 291 KGAGKQVDIAAAKLIQKLG 309 >gi|196042128|ref|ZP_03109412.1| ribonuclease HIII [Bacillus cereus NVH0597-99] gi|229093650|ref|ZP_04224750.1| Ribonuclease HIII [Bacillus cereus Rock3-42] gi|196027064|gb|EDX65687.1| ribonuclease HIII [Bacillus cereus NVH0597-99] gi|228689737|gb|EEL43544.1| Ribonuclease HIII [Bacillus cereus Rock3-42] Length = 337 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ ++ G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFNELSKKAGMPLP 295 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 296 KGAGKQVDIAAAKLIQKLG 314 >gi|296505031|ref|YP_003666731.1| ribonuclease HIII [Bacillus thuringiensis BMB171] gi|296326083|gb|ADH09011.1| ribonuclease HIII [Bacillus thuringiensis BMB171] Length = 311 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 212 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ ++ G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFNELSKKAGMPLP 269 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 270 KGAGKQVDIAAAKLIQKLG 288 >gi|225866529|ref|YP_002751907.1| ribonuclease HIII [Bacillus cereus 03BB102] gi|254808011|sp|C1ETZ4|RNH3_BACC3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225790928|gb|ACO31145.1| ribonuclease HIII [Bacillus cereus 03BB102] Length = 311 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 153 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 212 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ ++ G Sbjct: 213 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFNELSKKAGMPLP 269 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 270 KGAGKQVDIAAAKLIQKLG 288 >gi|118479705|ref|YP_896856.1| ribonuclease HIII [Bacillus thuringiensis str. Al Hakam] gi|196044948|ref|ZP_03112182.1| ribonuclease HIII [Bacillus cereus 03BB108] gi|229186809|ref|ZP_04313964.1| Ribonuclease HIII [Bacillus cereus BGSC 6E1] gi|118418930|gb|ABK87349.1| ribonuclease HII [Bacillus thuringiensis str. Al Hakam] gi|196024436|gb|EDX63109.1| ribonuclease HIII [Bacillus cereus 03BB108] gi|228596546|gb|EEK54211.1| Ribonuclease HIII [Bacillus cereus BGSC 6E1] Length = 337 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 31/199 (15%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDKHNIHKA---------TLDAIYHAVENLQVIPRSALIDGRSIPED 128 S ++ ++ AI + + + ++ + D Sbjct: 179 VVPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPD 238 Query: 129 LPCQ------------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + + KG+S+ L++AAASI+A R ++ ++ G Sbjct: 239 TYYKYLAKQKQVQRENVYFATKGESVHLAVAAASILA---RYSFVKQFNELSKKAGMPLP 295 Query: 177 VGYPTAKHQQV---IKEKG 192 G I++ G Sbjct: 296 KGAGKQVDIAAAKLIQKLG 314 >gi|288817370|ref|YP_003431717.1| ribonuclease HIII [Hydrogenobacter thermophilus TK-6] gi|288786769|dbj|BAI68516.1| ribonuclease HIII [Hydrogenobacter thermophilus TK-6] gi|308750977|gb|ADO44460.1| ribonuclease HIII [Hydrogenobacter thermophilus TK-6] Length = 259 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 59/161 (36%), Gaps = 12/161 (7%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGIN---DSKKISHK-----KR 68 + E+ G DE G+G + GP+V+ +I+ P++ ++ K+ K Sbjct: 67 SLMEEPSGVQIGCDESGKGDVFGPLVLCCVIIPPSHYKRVLSLAPKDCKLLKDEVLLKKV 126 Query: 69 EELYEKITSSAIISISSASHQYIDKHNI-HKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 E L + + ++ ++ + ++ A +E+++ + + Sbjct: 127 EALSPLVEAKCLVYEPEQLNELYSEVRNLNRIMDRAYRTLIEDVRKHYHVEITIDAYSSQ 186 Query: 128 DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + K ++++ AS+ A R R + + Sbjct: 187 SPFGKGVVFKKKGERDVAVSVASMFA---RARFLLWIREHN 224 >gi|294056228|ref|YP_003549886.1| ribonuclease HIII [Coraliomargarita akajimensis DSM 45221] gi|293615561|gb|ADE55716.1| ribonuclease HIII [Coraliomargarita akajimensis DSM 45221] Length = 329 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 21/177 (11%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKK 67 + + + AG+DE G+G L GP+V A ++ D + + G+ DSKK++ Sbjct: 96 LGYDEVHNPEWFTLHAGMDESGKGDLFGPLVTACVVADGDMVRQWLELGVADSKKLTDNS 155 Query: 68 REELYEKITSSAIISI----------SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 +L ++I + + I + H++ N A + + Sbjct: 156 ILKLEKEIRKTKGVVIKTAFARMPKYNDLYHKFDRNLNKLLAWYHSKSLIGALDERPAPW 215 Query: 118 ALIDGRSIPEDLPCQAFAVIK-------GDSISLSIAAASIIAKVTRDRLMRIAHKK 167 L+D + + + +AAASI+A+ R M+ ++ Sbjct: 216 GLLDQFTKEKLVDAYVKDRKDFKLVSRTKAESDPVVAAASIVARAVYVREMKRLSEE 272 >gi|294155370|ref|YP_003559754.1| ribonuclease HII [Mycoplasma crocodyli MP145] gi|291599873|gb|ADE19369.1| ribonuclease HII [Mycoplasma crocodyli MP145] Length = 246 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 76/204 (37%), Gaps = 40/204 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREE-LYEKITSS 78 + G+DE G G GP++ AA+++ I + G+ DSKKI+ R L +I S Sbjct: 28 KRIIGVDETGVGDYFGPLISAAVLVSDKQIEYLKSIGVKDSKKITSDSRIIDLANQIKSK 87 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENL--------------------------- 111 + + + S+ ++ + + Sbjct: 88 CLYKVYTLSNAGYNRVEQTYRNSNKLKFFTHAHVINSLEELLESRGSEYDYVFIDQYTTK 147 Query: 112 ----QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + I+ S + K +SI +S+AAASI+A R L+ K Sbjct: 148 NAFIEYFNNMIYINNWSSIKVFKKPILLSHKAESIHISVAAASILA---RAELLENMKKM 204 Query: 168 YPDYGFDSHVGYPTAKHQQVIKEK 191 Y FD +G + + ++++++ Sbjct: 205 KAKYNFDFKLG-ASKQVKELVQKF 227 >gi|319651783|ref|ZP_08005909.1| ribonuclease [Bacillus sp. 2_A_57_CT2] gi|317396602|gb|EFV77314.1| ribonuclease [Bacillus sp. 2_A_57_CT2] Length = 312 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 63/180 (35%), Gaps = 28/180 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V A + + IP G+ DSK + +K E+ ++I Sbjct: 94 VIGSDEVGTGDYFGPITVVAAYVKKDQIPLLKELGVKDSKNLGDEKIIEIAKQIKDIVPY 153 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS----------------- 124 S+ + ++ +K + I + N + I Sbjct: 154 SLLTLHNEKYNKLQQSGMSQGKIKALLHNQAIGHVLGKIAPEKPEAILIDQFAKEEVYFN 213 Query: 125 ----IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + F K + I L++AAASI+A R +R GF G Sbjct: 214 YLKNQQTIQRERVFFSTKAEGIHLAVAAASILA---RYAFVRHFENLSTKAGFRLTKGAG 270 >gi|228917194|ref|ZP_04080751.1| Ribonuclease HIII [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842395|gb|EEM87486.1| Ribonuclease HIII [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 332 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 174 VVPYSSLVLHNEKYNE 189 >gi|228935866|ref|ZP_04098676.1| Ribonuclease HIII [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823634|gb|EEM69456.1| Ribonuclease HIII [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 337 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 179 VVPYSSLVLHNEKYNE 194 >gi|228948280|ref|ZP_04110563.1| Ribonuclease HIII [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811267|gb|EEM57605.1| Ribonuclease HIII [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 332 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 174 VVPYSSLVLHNEKYNE 189 >gi|218905781|ref|YP_002453615.1| ribonuclease HIII [Bacillus cereus AH820] gi|218538277|gb|ACK90675.1| ribonuclease HIII [Bacillus cereus AH820] Length = 177 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 153 VVPYSSLVLHNEKYNE 168 >gi|167635636|ref|ZP_02393948.1| ribonuclease HIII [Bacillus anthracis str. A0442] gi|170688262|ref|ZP_02879472.1| ribonuclease HIII [Bacillus anthracis str. A0465] gi|167529056|gb|EDR91811.1| ribonuclease HIII [Bacillus anthracis str. A0442] gi|170667768|gb|EDT18521.1| ribonuclease HIII [Bacillus anthracis str. A0465] Length = 332 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 114 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 173 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 174 VVPYSSLVLHNEKYNE 189 >gi|52140950|ref|YP_085879.1| ribonuclease HIII [Bacillus cereus E33L] gi|81685974|sp|Q633N8|RNH3_BACCZ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|51974419|gb|AAU15969.1| ribonuclease HII [Bacillus cereus E33L] Length = 311 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 153 VVPYSSLVLHNEKYNE 168 >gi|49478678|ref|YP_038604.1| ribonuclease HIII [Bacillus thuringiensis serovar konkukian str. 97-27] gi|73917843|sp|Q6HCX2|RNH3_BACHK RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|49330234|gb|AAT60880.1| ribonuclease HII [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 311 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 153 VVPYSSLVLHNEKYNE 168 >gi|30264624|ref|NP_847001.1| ribonuclease HIII [Bacillus anthracis str. Ames] gi|47530095|ref|YP_021444.1| ribonuclease HIII [Bacillus anthracis str. 'Ames Ancestor'] gi|49187446|ref|YP_030698.1| ribonuclease HIII [Bacillus anthracis str. Sterne] gi|165871447|ref|ZP_02216094.1| ribonuclease HIII [Bacillus anthracis str. A0488] gi|167641557|ref|ZP_02399804.1| ribonuclease HIII [Bacillus anthracis str. A0193] gi|170708703|ref|ZP_02899141.1| ribonuclease HIII [Bacillus anthracis str. A0389] gi|177653122|ref|ZP_02935409.1| ribonuclease HIII [Bacillus anthracis str. A0174] gi|190566898|ref|ZP_03019814.1| ribonuclease HIII [Bacillus anthracis Tsiankovskii-I] gi|227817338|ref|YP_002817347.1| ribonuclease HIII [Bacillus anthracis str. CDC 684] gi|229601632|ref|YP_002868834.1| ribonuclease HIII [Bacillus anthracis str. A0248] gi|254686953|ref|ZP_05150811.1| ribonuclease HIII [Bacillus anthracis str. CNEVA-9066] gi|254724517|ref|ZP_05186300.1| ribonuclease HIII [Bacillus anthracis str. A1055] gi|254736662|ref|ZP_05194368.1| ribonuclease HIII [Bacillus anthracis str. Western North America USA6153] gi|254741700|ref|ZP_05199387.1| ribonuclease HIII [Bacillus anthracis str. Kruger B] gi|254754703|ref|ZP_05206738.1| ribonuclease HIII [Bacillus anthracis str. Vollum] gi|254757535|ref|ZP_05209562.1| ribonuclease HIII [Bacillus anthracis str. Australia 94] gi|73917840|sp|Q81L36|RNH3_BACAN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|254808009|sp|C3PAE4|RNH3_BACAA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|254808010|sp|C3L8T2|RNH3_BACAC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|30259282|gb|AAP28487.1| ribonuclease HIII [Bacillus anthracis str. Ames] gi|47505243|gb|AAT33919.1| ribonuclease HIII [Bacillus anthracis str. 'Ames Ancestor'] gi|49181373|gb|AAT56749.1| ribonuclease HIII [Bacillus anthracis str. Sterne] gi|164712744|gb|EDR18274.1| ribonuclease HIII [Bacillus anthracis str. A0488] gi|167510442|gb|EDR85841.1| ribonuclease HIII [Bacillus anthracis str. A0193] gi|170126383|gb|EDS95272.1| ribonuclease HIII [Bacillus anthracis str. A0389] gi|172081646|gb|EDT66717.1| ribonuclease HIII [Bacillus anthracis str. A0174] gi|190561889|gb|EDV15858.1| ribonuclease HIII [Bacillus anthracis Tsiankovskii-I] gi|227005114|gb|ACP14857.1| ribonuclease HIII [Bacillus anthracis str. CDC 684] gi|229266040|gb|ACQ47677.1| ribonuclease HIII [Bacillus anthracis str. A0248] Length = 311 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 93 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 152 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 153 VVPYSSLVLHNEKYNE 168 >gi|65321922|ref|ZP_00394881.1| COG1039: Ribonuclease HIII [Bacillus anthracis str. A2012] Length = 337 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS 77 + G DEVG G GP+ V A+ +D IP G+ DSK ++ ++ + +++ Sbjct: 119 GTMSIVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDEQITAIAKQLLH 178 Query: 78 SAIISISSASHQYIDK 93 S ++ ++ Sbjct: 179 VVPYSSLVLHNEKYNE 194 >gi|296111199|ref|YP_003621580.1| ribonuclease HIII [Leuconostoc kimchii IMSNU 11154] gi|295832730|gb|ADG40611.1| ribonuclease HIII [Leuconostoc kimchii IMSNU 11154] Length = 307 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG GA GP+ AA+ + GI DSK ++ K ++ +I + Sbjct: 93 WSVLGSDEVGAGAYFGPLTTAAVFVSQRDLKWVRQLGIADSKTLTDDKMRQIAPEIIARL 152 Query: 80 IISISSASHQYIDK 93 + + + ++ Sbjct: 153 PHHVVNLMPEKYNQ 166 >gi|152976941|ref|YP_001376458.1| ribonuclease HIII [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025693|gb|ABS23463.1| ribonuclease HIII [Bacillus cytotoxicus NVH 391-98] Length = 338 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 25/196 (12%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR----EELYE 73 + G DEVG G GP+ V A +D IP G+ DSK ++ + ++L Sbjct: 119 GTMSIIGSDEVGTGDYFGPMTVVAAYVDAKQIPLLKELGVKDSKNLNDAQITAIAKQLLT 178 Query: 74 KITSSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRS 124 I S+++ + ++ DK N +KA ++ + Sbjct: 179 VIPYSSLVLHNEKYNELFDKGNNQGKLKALLHNKAIINLLAKIAPTKPDGILIDQFTQPD 238 Query: 125 IPEDLPCQAFAVIKGDSISLSIA-----AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 V + + + A + + + R ++ + G G Sbjct: 239 TYYKYLANQKQVQRDNVYFATKGESIHLAVAAASILARYSFVKQFDELSKKAGMQLPKGA 298 Query: 180 PTAKHQQV---IKEKG 192 I++ G Sbjct: 299 GKQVDIAAAKLIQKLG 314 >gi|196232748|ref|ZP_03131599.1| ribonuclease HIII [Chthoniobacter flavus Ellin428] gi|196223208|gb|EDY17727.1| ribonuclease HIII [Chthoniobacter flavus Ellin428] Length = 319 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 26/185 (14%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKK 67 E ++ + P G+DE G+G GP+V+A D + GI DSKKI K Sbjct: 85 LGYEDVLNPEMFAPHFGVDESGKGDFFGPLVIAGCYTDRGITRTLMEAGIQDSKKIGSDK 144 Query: 68 REELYEKITSS---AIISISSASHQYIDKHNIH-----------KATLDAIYHAVENLQV 113 R I A+ S+ + + ++ A + + Sbjct: 145 RIRDLAAIIKRTQGAVHSVVAIGPERYNQLYAKFGNLNRLLAWGHARVIENLLEIRPDCP 204 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 S ++ + + I+ D + + + ++ A R I + Sbjct: 205 RALSDQFANPALIKRALLEKGRAIQLDQRTKAESDVAVAAASILAREAFI--------DW 256 Query: 174 DSHVG 178 + G Sbjct: 257 LRNKG 261 >gi|319892130|ref|YP_004149005.1| Ribonuclease HIII [Staphylococcus pseudintermedius HKU10-03] gi|317161826|gb|ADV05369.1| Ribonuclease HIII [Staphylococcus pseudintermedius HKU10-03] Length = 312 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 41/217 (18%) Query: 7 PERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKK 62 P P N G DE G G GP+ V A + +IP G++DSK+ Sbjct: 82 PVTPT-----QHIRYNAHSCIGSDEAGSGDYFGPLTVCACYVSAQHIPILKELGVDDSKR 136 Query: 63 ISHKKR---EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSAL 119 ++ KK E +++ + + + + + + A+ H V+ + Sbjct: 137 LTDKKIVALAEQLVTFLPHSLLVLDNPKYNERKQLGWSQVKMKAVLHNECIKNVLKKVDA 196 Query: 120 IDGRSIPEDLPCQAFAVIK-----------------GDSISLSIAAASIIAKVTRDRLMR 162 + I D + G+S SL+IAAASII+ R ++ Sbjct: 197 TEVDYIVIDQFAKQEVYEHYALGAIPERQKTQFETKGESKSLAIAAASIIS---RYAFVK 253 Query: 163 IAHKKYPDYGFDSHVGYPTAKHQ------QVIKEKGP 193 + Y + G A H+ +VI++ G Sbjct: 254 HMDQLSKRYRMEILKG---ASHKVDVTAAKVIEKYGL 287 >gi|323464759|gb|ADX76912.1| ribonuclease HIII [Staphylococcus pseudintermedius ED99] Length = 312 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 36/208 (17%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR--- 68 N G DE G G GP+ V A + +IP G++DSK+++ KK Sbjct: 86 TQYIRYNAHSCIGSDEAGSGDYFGPLTVCACYVSAQHIPILKELGVDDSKRLTDKKIVAL 145 Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 E +++ + + + + + + A+ H V+ + + I D Sbjct: 146 AEQLVTFLPHSLLVLDNPKYNERKQLGWSQVKMKAVLHNECIKNVLKKVDATEVDYIVID 205 Query: 129 LPCQAFAVIK-----------------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 + G+S SL+IAAASII+ R ++ + Y Sbjct: 206 QFAKQEVYEHYALGAIPERQKTQFETKGESKSLAIAAASIIS---RYAFVKHMDQLSKRY 262 Query: 172 GFDSHVGYPTAKHQ------QVIKEKGP 193 + G A H+ +VI++ G Sbjct: 263 RMEILKG---ASHKVDVTAAKVIEKYGL 287 >gi|15828771|ref|NP_326131.1| ribonuclease HII (RNase HII) [Mycoplasma pulmonis UAB CTIP] gi|14089714|emb|CAC13473.1| RIBONUCLEASE HII (RNASE HII) [Mycoplasma pulmonis] Length = 243 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 10/143 (6%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKR 68 EL+ + K V GIDE G G P+V A ++ N I G+ DSKK+S K Sbjct: 11 ELQQELANK---KVLGIDETGVGDYFTPLVAAVAVVSEENVQKLIDLGVKDSKKLSDSKI 67 Query: 69 EELYEKITSS--AIISISSASHQYIDKHN-IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 ++L I + A ++ + + + A + ++ L+ + + Sbjct: 68 QQLASIIKENELAKFKVAHIGPKGYNNMTKKNNANEIKTFVHLKALKEAKFTIKTNDFDC 127 Query: 126 PEDLPCQAFAVIKGDSISLSIAA 148 IKG + Sbjct: 128 VLIDQYSTENAIKGYLEKWFDPS 150 >gi|290968977|ref|ZP_06560512.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L] gi|290780933|gb|EFD93526.1| ribonuclease HII [Megasphaera genomosp. type_1 str. 28L] Length = 306 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 53/173 (30%), Gaps = 22/173 (12%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKI--SHKKREELYEKITSSAII 81 G DE G+G + GP+VVAA IL + G+ DSK + + KR K Sbjct: 98 GCDESGKGDVFGPLVVAACILTEEDAAQLRALGVRDSKMVRSTQIKRLAETIKTRLQDRY 157 Query: 82 SISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSIP 126 S+ Q ++ A + I R + Sbjct: 158 SVQVVMPQEYNRRYVCLAENGKNLNDLLGQLHARNIRRLLSKHKCPCIIVDKFGSERYVL 217 Query: 127 EDLPCQAFAVIKGDSISLSI-AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 ++L A A + + + R+ + + YG +G Sbjct: 218 QELGTLAKTHTVIQIPHGEADTAVAAASILAREAFVAAMEELRRLYGMSFPMG 270 >gi|321312395|ref|YP_004204682.1| ribonuclease HIII [Bacillus subtilis BSn5] gi|320018669|gb|ADV93655.1| ribonuclease HIII [Bacillus subtilis BSn5] Length = 312 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 72/205 (35%), Gaps = 36/205 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V +D +P G+ DSK + + E+ + + Sbjct: 95 VIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPY 154 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI---------------- 125 S+ ++ + + + + N + +DG Sbjct: 155 SLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKMDGIKPEAILIDQFAEPGVYFN 214 Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + + + K + I L++AAASIIA R + K + G G Sbjct: 215 HLKGRDIVKERTYFSTKAEGIHLAVAAASIIA---RYSFLMEMDKLSREAGMTLPKGAG- 270 Query: 182 AKHQQ-----VIKEKGPSCIHRLTF 201 H +I +KG S + TF Sbjct: 271 -PHVDEAAAKLILKKGASAL--RTF 292 >gi|15618976|ref|NP_225262.1| ribonuclease HIII [Chlamydophila pneumoniae CWL029] gi|15836599|ref|NP_301123.1| ribonuclease HIII [Chlamydophila pneumoniae J138] gi|33242442|ref|NP_877383.1| ribonuclease HIII [Chlamydophila pneumoniae TW-183] gi|161353772|ref|NP_445321.2| ribonuclease HIII [Chlamydophila pneumoniae AR39] gi|7227929|sp|Q9Z6J1|RNH3_CHLPN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|4377404|gb|AAD19205.1| Ribonuclease HII [Chlamydophila pneumoniae CWL029] gi|8979441|dbj|BAA99275.1| rbonuclease HII [Chlamydophila pneumoniae J138] gi|33236953|gb|AAP99040.1| ribonuclease HII [Chlamydophila pneumoniae TW-183] Length = 298 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 27/184 (14%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKKREELYE 73 E+++ P G+DE G+G GP+ +AA+ IL + DSK + K L Sbjct: 82 EQDLRPRLGVDESGKGDFFGPLCIAAVYASNAEILKKLYENK-VQDSKNLKDTKIASLAR 140 Query: 74 KITSSAIISISSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I S + + + ++ + + + D +I + Sbjct: 141 IIRSLCVCDVIILYPEKYNELYGKFQNLNTLLAWAHATVINNLAPKPAGDVFAISDQFAA 200 Query: 132 QAFAVIKG---------------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + ++K + +AAASI+A RD ++ K Y Sbjct: 201 SEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILA---RDAFVQSIQKLEEQYQVQLP 257 Query: 177 VGYP 180 G Sbjct: 258 KGAG 261 >gi|7189697|gb|AAF38581.1| ribonuclease HII [Chlamydophila pneumoniae AR39] Length = 301 Score = 51.5 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 27/184 (14%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKKREELYE 73 E+++ P G+DE G+G GP+ +AA+ IL + DSK + K L Sbjct: 85 EQDLRPRLGVDESGKGDFFGPLCIAAVYASNAEILKKLYENK-VQDSKNLKDTKIASLAR 143 Query: 74 KITSSAIISISSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I S + + + ++ + + + D +I + Sbjct: 144 IIRSLCVCDVIILYPEKYNELYGKFQNLNTLLAWAHATVINNLAPKPAGDVFAISDQFAA 203 Query: 132 QAFAVIKG---------------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + ++K + +AAASI+A RD ++ K Y Sbjct: 204 SEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILA---RDAFVQSIQKLEEQYQVQLP 260 Query: 177 VGYP 180 G Sbjct: 261 KGAG 264 >gi|299822574|ref|ZP_07054460.1| ribonuclease H [Listeria grayi DSM 20601] gi|299816103|gb|EFI83341.1| ribonuclease H [Listeria grayi DSM 20601] Length = 253 Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 61/197 (30%), Gaps = 31/197 (15%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A + +P G+ DSK + + + EKI Sbjct: 38 KNVVGSDEVGTGDYFGPITVCAAYVSSEMMPQLTALGVRDSKDMRDPEILTVAEKIIPFV 97 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------- 125 S+ + + + + N + + Sbjct: 98 PHSVLICPNGKYNALQQSGMNQGKMKAILHNRAIENVLKKLAPLHPDAILIDQFAEKGVY 157 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P + + K + L++AAASIIA R R ++ + G G Sbjct: 158 YRYLANEPSIMRENVYFATKAEGHHLAVAAASIIA---RYRFVKAFEEIQQQVGLPLTKG 214 Query: 179 YPTAKHQQV---IKEKG 192 + I+ G Sbjct: 215 AGAKVDAEAAEIIRRFG 231 >gi|316974057|gb|EFV57595.1| ribonuclease H2 subunit A [Trichinella spiralis] Length = 418 Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 28/162 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G+DE GRG + GP+V A + +N+ DSK ++ +R +++ + S + Sbjct: 183 GVDEAGRGPVLGPMVYACGVCVTDNLEQLSTLKAKDSKTLTEDERSTIFKNMQSEKNSHL 242 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS------------------------AL 119 + + + + I K+ L + + + Sbjct: 243 FAYTMKLLSPVYISKSMLGRSKYNLNEISHDTAMELIQIVCDAGVVVDKVILDTVGPTEK 302 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLM 161 + + K DS+ ++AASI AKVTRD + Sbjct: 303 YEAKLRSRFPKIDILVSKKADSLHTIVSAASICAKVTRDNHL 344 >gi|15606830|ref|NP_214210.1| hypothetical protein aq_1768 [Aquifex aeolicus VF5] gi|7227918|sp|O67644|RNH3_AQUAE RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|2984074|gb|AAC07614.1| hypothetical protein aq_1768 [Aquifex aeolicus VF5] Length = 257 Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 7/158 (4%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIISI 83 G DE G+G + G +V+ + + N D+K++S K+ E LY + Sbjct: 75 GCDESGKGDIFGSLVLCCVCIPEENYLKVSSLNPRDTKRLSDKRVERLYLALKPLVKAYC 134 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG---D 140 + +K L+ + L + + D + + + Sbjct: 135 YEIKPEEYNKLYRKFRNLNKMMTHFYKLLIERVKEECGVSEVVVDKYQPSNPFGEDVIFE 194 Query: 141 SISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + + A ++ + R + ++ + + G G Sbjct: 195 TEAERNLAVAVASIFARYKFLQSLKEVERELGIKIPKG 232 >gi|296331590|ref|ZP_06874059.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675451|ref|YP_003867123.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii str. W23] gi|296151185|gb|EFG92065.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413695|gb|ADM38814.1| ribonuclease HIII [Bacillus subtilis subsp. spizizenii str. W23] Length = 313 Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 70/205 (34%), Gaps = 36/205 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V +D +P G+ DSK + + E+ + + Sbjct: 96 VIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPY 155 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIP--------------------RSALID 121 S+ ++ + + + + N + + Sbjct: 156 SLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKMDGAKPEAILIDQFAEPGVYFN 215 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + + + K + I LS+AAASIIA R + K + G G Sbjct: 216 HLKGRDIVRERTYFSTKAEGIHLSVAAASIIA---RYSFLMEMDKLSREAGMTLPKGAG- 271 Query: 182 AKHQQ-----VIKEKGPSCIHRLTF 201 H +I +KG S + TF Sbjct: 272 -PHVDEAAAKLILKKGASAL--RTF 293 >gi|291320114|ref|YP_003515372.1| ribonuclease HII [Mycoplasma agalactiae] gi|290752443|emb|CBH40414.1| Ribonuclease HII (RNase HII) [Mycoplasma agalactiae] Length = 238 Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN 52 F++++ + E + GIDEVG G GP+ A+ +D N Sbjct: 5 DFDVDSNLLEN--KSIIGIDEVGVGDYFGPLCACAVFIDAKN 44 >gi|112490233|pdb|2D0A|A Chain A, Crystal Structure Of Bst-Rnase Hiii gi|112490235|pdb|2D0B|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mg2+ gi|112490237|pdb|2D0C|A Chain A, Crystal Structure Of Bst-Rnase Hiii In Complex With Mn2+ gi|47522551|dbj|BAD20196.1| ribonuclease HIII [Geobacillus stearothermophilus] Length = 310 Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Query: 17 MVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELY 72 + G DEVG G GP+VVAA +D +I G+ DSK+++ + + + Sbjct: 84 AAHQLGSLSAIGSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIA 143 Query: 73 EKITSSAIISISSASHQYIDKH 94 I + +++ + ++ Sbjct: 144 PAIMETVPHAVTVLDNPQYNRW 165 >gi|291485294|dbj|BAI86369.1| ribonuclease HIII [Bacillus subtilis subsp. natto BEST195] Length = 312 Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 36/205 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V +D +P G+ DSK + + E+ + + Sbjct: 95 VIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPY 154 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIP--------------------RSALID 121 S+ ++ + + + + N + + Sbjct: 155 SLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKLDGVKPEAILIDQFAEPGVYFN 214 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + + + K + I L++AAASIIA R + K + G G Sbjct: 215 HLKGRDIVKERTYFSTKAEGIHLAVAAASIIA---RYSFLMEMDKLSREAGMTLPKGAG- 270 Query: 182 AKHQQ-----VIKEKGPSCIHRLTF 201 H +I +KG S + TF Sbjct: 271 -PHVDEAAAKLILKKGASAL--RTF 292 >gi|297583682|ref|YP_003699462.1| ribonuclease HIII [Bacillus selenitireducens MLS10] gi|297142139|gb|ADH98896.1| ribonuclease HIII [Bacillus selenitireducens MLS10] Length = 311 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 60/212 (28%), Gaps = 41/212 (19%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 + G DE G G GP+ V A L + +GI DSK I+ K L ++ + Sbjct: 94 RELIGSDETGTGDFFGPMTVVACHLTKEQLKTVESWGIRDSKTITDKLIRTLAPRLLDTC 153 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVEN-------------------------LQVI 114 S+ + + + + + + Sbjct: 154 TYSLMTLHNNKYNALQQDGMNQGQMKAMLHHQAISNVIAKLNEEGTEADGVLIDQFCPPG 213 Query: 115 PRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFD 174 + + + K + + ++AAASI+A R + + G Sbjct: 214 TYFRYLKQGKLRWSEETPLYFATKAEQLHPAVAAASILA---RYAFIEEMDRIEEKLGMP 270 Query: 175 SHVGYP--TAKHQQVIK-EKG------PSCIH 197 G + Q I G + H Sbjct: 271 VPKGAGKAVDQAAQAIADRHGTDTLKAVTKWH 302 >gi|228923300|ref|ZP_04086588.1| Ribonuclease HIII [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836254|gb|EEM81607.1| Ribonuclease HIII [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 337 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 82 SISSASHQYIDK 93 S ++ ++ Sbjct: 183 SSLVLHNEKYNE 194 >gi|229019776|ref|ZP_04176579.1| Ribonuclease HIII [Bacillus cereus AH1273] gi|228741501|gb|EEL91698.1| Ribonuclease HIII [Bacillus cereus AH1273] Length = 337 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 123 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 182 Query: 82 SISSASHQYIDK 93 S ++ ++ Sbjct: 183 SSLVLHNEKYNE 194 >gi|229026003|ref|ZP_04182387.1| Ribonuclease HIII [Bacillus cereus AH1272] gi|228735284|gb|EEL85895.1| Ribonuclease HIII [Bacillus cereus AH1272] Length = 332 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 82 SISSASHQYIDK 93 S ++ ++ Sbjct: 178 SSLVLHNEKYNE 189 >gi|229175263|ref|ZP_04302778.1| Ribonuclease HIII [Bacillus cereus MM3] gi|228608095|gb|EEK65402.1| Ribonuclease HIII [Bacillus cereus MM3] Length = 332 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 + G DEVG G GP+ V A+ +D IP G+ DSK ++ + + +++ Sbjct: 118 IVGSDEVGTGDFFGPMTVVAVYVDAKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPY 177 Query: 82 SISSASHQYIDK 93 S ++ ++ Sbjct: 178 SSLVLHNEKYNE 189 >gi|329766418|ref|ZP_08257962.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137017|gb|EGG41309.1| Ribonuclease HII [Candidatus Nitrosoarchaeum limnia SFB1] Length = 116 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 11/83 (13%) Query: 132 QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQQVIK- 189 + + DS + ++AASIIAKV RDR + K + D GYP+ K +K Sbjct: 37 KIRSYHHADSRFIVVSAASIIAKVVRDREIMKLRKNH-----DLGSGYPSDSKTIDFVKL 91 Query: 190 ----EKGPSCIHRLTFRPLRNLS 208 R +++P + + Sbjct: 92 YYKTNHILPVFVRKSWKPTQKIL 114 >gi|224476247|ref|YP_002633853.1| ribonuclease HIII [Staphylococcus carnosus subsp. carnosus TM300] gi|222420854|emb|CAL27668.1| putative ribonuclease HIII [Staphylococcus carnosus subsp. carnosus TM300] Length = 314 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 26/196 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 G DE G G GP+ V A + N G++DSKK++ K E+ E+I + S Sbjct: 97 IGSDEAGSGDYFGPLTVCAAYVSKKNAEILKTLGVDDSKKLTDAKIVEIAEQIITFIPHS 156 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + + ++ + + + N + I P D ++G Sbjct: 157 LLTMKNDKYNEQQRKGWSQVKMKAVLHNQAIQNVVDKISKSHEPLDYIVIDQFAVRGVYQ 216 Query: 143 SLSIAAASIIAKVT-------------------RDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + +++ K R ++ + + G Sbjct: 217 NYALSQMPYPDKTHFETKGESKSIAIAAASIISRYAFVKHMDQIGSELHTTVPKGASNKV 276 Query: 184 HQQV---IKEKGPSCI 196 I++ G S + Sbjct: 277 DLFAAKVIEKYGVSKL 292 >gi|206895101|ref|YP_002247347.1| ribonuclease hiii (rnase hiii), putative [Coprothermobacter proteolyticus DSM 5265] gi|206737718|gb|ACI16796.1| ribonuclease hiii (rnase hiii), putative [Coprothermobacter proteolyticus DSM 5265] Length = 251 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 2/96 (2%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSAS 87 G DE G+G L GP+VVA L+ DSK++S+ E+L + S + I Sbjct: 68 GSDEAGKGDLFGPLVVAGTFLEDQLAMRLAIDSKELSNGAVEKLAQFFKSKCQVVIEQVL 127 Query: 88 HQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + + A L ++ V R +D Sbjct: 128 PHELTSNM--NAVLLKLHLNVYEELDHCRPFYVDDF 161 >gi|77412143|ref|ZP_00788466.1| ribonuclease HIII [Streptococcus agalactiae CJB111] gi|77161803|gb|EAO72791.1| ribonuclease HIII [Streptococcus agalactiae CJB111] Length = 297 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 78/213 (36%), Gaps = 37/213 (17%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + VVA+ + ++ G+ DSK ++ +K ++ Sbjct: 72 ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131 Query: 71 LYEKITSSAIISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIP 115 + + S Q ++ ++A + E +++ Sbjct: 132 TAPLLEKAIPHKALLLSPQKYNQVVGPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 191 Query: 116 RSALIDGRSIPEDLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + K ++ L++A +SIIA R+ + +K Sbjct: 192 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIA---RNLFLENLNKLSD 248 Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196 D G+ G HQ Q++K G S + Sbjct: 249 DVGYKLPSGAG---HQSDKVASQLLKAYGISSL 278 >gi|67613296|ref|XP_667291.1| ribonuclease H1 large subunit [Cryptosporidium hominis TU502] gi|54658412|gb|EAL37062.1| ribonuclease H1 large subunit [Cryptosporidium hominis] Length = 81 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF 55 E + R ++ + GIDE GRG + GP+V A + N Sbjct: 7 ENIHRFEHKEVILGIDEAGRGPVLGPMVYACLFYPKENENL 47 >gi|76798409|ref|ZP_00780650.1| ribonuclease HIII [Streptococcus agalactiae 18RS21] gi|76586241|gb|EAO62758.1| ribonuclease HIII [Streptococcus agalactiae 18RS21] Length = 286 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 37/213 (17%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + VVA+ + ++ G+ DSK ++ +K ++ Sbjct: 61 ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 120 Query: 71 LYEKITSSAIISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIP 115 + + + S Q ++ ++A + E +++ Sbjct: 121 IAPLLEKAIPHKALLLSPQKYNQVVSPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 180 Query: 116 RSALIDGRSIPEDLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + K ++ L++A +SIIA R+ + +K Sbjct: 181 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIA---RNLFLENLNKLSD 237 Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196 D G+ G HQ Q++K G S + Sbjct: 238 DVGYKLPSGAG---HQSDKVASQLLKAYGISSL 267 >gi|22537861|ref|NP_688712.1| ribonuclease HIII [Streptococcus agalactiae 2603V/R] gi|76787270|ref|YP_330330.1| ribonuclease HIII [Streptococcus agalactiae A909] gi|77405976|ref|ZP_00783055.1| ribonuclease HIII [Streptococcus agalactiae H36B] gi|77409445|ref|ZP_00786139.1| ribonuclease HIII [Streptococcus agalactiae COH1] gi|73917857|sp|Q8DXX3|RNH3_STRA5 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|123601321|sp|Q3JZH3|RNH3_STRA1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|22534757|gb|AAN00585.1|AE014270_3 ribonuclease HIII [Streptococcus agalactiae 2603V/R] gi|76562327|gb|ABA44911.1| ribonuclease HIII [Streptococcus agalactiae A909] gi|77171937|gb|EAO75112.1| ribonuclease HIII [Streptococcus agalactiae COH1] gi|77175428|gb|EAO78218.1| ribonuclease HIII [Streptococcus agalactiae H36B] Length = 297 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 37/213 (17%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + VVA+ + ++ G+ DSK ++ +K ++ Sbjct: 72 ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131 Query: 71 LYEKITSSAIISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIP 115 + + + S Q ++ ++A + E +++ Sbjct: 132 IAPLLEKAIPHKALLLSPQKYNQVVSPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 191 Query: 116 RSALIDGRSIPEDLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + K ++ L++A +SIIA R+ + +K Sbjct: 192 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIA---RNLFLENLNKLSD 248 Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196 D G+ G HQ Q++K G S + Sbjct: 249 DVGYKLPSGAG---HQSDKVASQLLKAYGISSL 278 >gi|169829510|ref|YP_001699668.1| ribonuclease HIII [Lysinibacillus sphaericus C3-41] gi|238688201|sp|B1HW99|RNH3_LYSSC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|168993998|gb|ACA41538.1| Ribonuclease HIII [Lysinibacillus sphaericus C3-41] Length = 308 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 62/203 (30%), Gaps = 31/203 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DE G G GP+ VAA+ + + G+ DSK +S ++ + ++ + Sbjct: 95 VLGSDETGTGDYFGPMTVAAVYVPSSKIELINELGVKDSKMLSDDYMRKIAPDLRAACVH 154 Query: 82 SISSASHQYIDK-------------HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 S+ ++ + +KA + + R + + Sbjct: 155 SVLILRNEKYNSLQAKGYSQGKMKAMMHNKALHNTLAKMAPETPEYILIDQFAERGVYYN 214 Query: 129 L-----PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +V A + + + R ++ + G + G Sbjct: 215 YLKNEREIVQESVYFSTKAEQLHVAVATASILARAAFLKEMDRLSDIAGLELMKGASNKV 274 Query: 184 HQQV--I-KEKG------PSCIH 197 Q I +++G + H Sbjct: 275 DVQAARIWRKQGEEFLRSITKWH 297 >gi|218961973|ref|YP_001741748.1| putative Ribonuclease H [Candidatus Cloacamonas acidaminovorans] gi|167730630|emb|CAO81542.1| putative Ribonuclease H [Candidatus Cloacamonas acidaminovorans] Length = 327 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPN----NIPFGINDSKKISHKKREELYEKITSSAIIS 82 G DE G+G GP+VV A + G+ DSKK++ ++ + + + + + Sbjct: 113 IGSDECGKGDYFGPLVVCAFAYKRDSENEFKNVGVKDSKKLNSEEIKRIAQYLYKNYANC 172 Query: 83 ISS 85 I Sbjct: 173 IHC 175 >gi|94991140|ref|YP_599240.1| ribonuclease HIII [Streptococcus pyogenes MGAS10270] gi|166226675|sp|Q1JF63|RNH3_STRPD RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|94544648|gb|ABF34696.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10270] Length = 300 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 28/183 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + V A +DP + PF G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHPFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + ++ Q++ + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTA 182 +A Sbjct: 261 GSA 263 >gi|71904214|ref|YP_281017.1| ribonuclease HIII [Streptococcus pyogenes MGAS6180] gi|123639303|sp|Q48RJ8|RNH3_STRPM RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|71803309|gb|AAX72662.1| ribonuclease HIII [Streptococcus pyogenes MGAS6180] Length = 300 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 28/183 (15%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + V A +DP + PF G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHPFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + ++ Q++ + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNTISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTA 182 +A Sbjct: 261 GSA 263 >gi|47213807|emb|CAF92580.1| unnamed protein product [Tetraodon nigroviridis] Length = 157 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 16/100 (16%) Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRD------RLMRIAHKKYPDYGF 173 + + K DS+ ++AASI AKV RD R + DYG Sbjct: 59 YEDKLSKIFPGVNVTVRPKADSLFPIVSAASICAKVARDHAVKHWRFAEELGEADTDYG- 117 Query: 174 DSHVGYPT-AKHQQVIKEK-----GPSCIHRLTFRPLRNL 207 GYP K + + G R ++ + L Sbjct: 118 ---SGYPNDPKTKAWLLRYLDPVFGYPQFVRFSWSTAQTL 154 >gi|144575201|gb|AAZ44026.2| ribonuclease HII [Mycoplasma synoviae 53] Length = 242 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 34/188 (18%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 V GIDEVG G P++ A+ + + G+ DSK +S +K ++++ I S Sbjct: 21 KFVFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKIKKVFNDIKSHI 80 Query: 80 II----SISSASHQYIDKHNIHKATLDAIYHAV------------------------ENL 111 + + K N ++ A A+ N Sbjct: 81 QYASALISQKSYNILFTKFNANEIKFLAHAEAINNLRKKVKKSELLIIDAYVNSDPSFNK 140 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP-- 169 + + K +S + +AAASI+A+ M+ +++P Sbjct: 141 YYEKIIVSYKDLYGFSPWKEKIAILKKAESHYIEVAAASIVARYELLLQMQKMQEEFPKA 200 Query: 170 DYGFDSHV 177 + S+ Sbjct: 201 KFNLASNK 208 >gi|71894629|ref|YP_278737.1| ribonuclease HII [Mycoplasma synoviae 53] Length = 237 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 34/188 (18%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 V GIDEVG G P++ A+ + + G+ DSK +S +K ++++ I S Sbjct: 16 KFVFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKIKKVFNDIKSHI 75 Query: 80 II----SISSASHQYIDKHNIHKATLDAIYHAV------------------------ENL 111 + + K N ++ A A+ N Sbjct: 76 QYASALISQKSYNILFTKFNANEIKFLAHAEAINNLRKKVKKSELLIIDAYVNSDPSFNK 135 Query: 112 QVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP-- 169 + + K +S + +AAASI+A+ M+ +++P Sbjct: 136 YYEKIIVSYKDLYGFSPWKEKIAILKKAESHYIEVAAASIVARYELLLQMQKMQEEFPKA 195 Query: 170 DYGFDSHV 177 + S+ Sbjct: 196 KFNLASNK 203 >gi|145481239|ref|XP_001426642.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124393718|emb|CAK59244.1| unnamed protein product [Paramecium tetraurelia] Length = 281 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 71/224 (31%), Gaps = 45/224 (20%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYE----- 73 + N + GI E GRG L GP+++A N + + +S K+ + Sbjct: 19 LKANSEWILGIFEAGRGPLIGPIIIAGCFWPITNHNYIVKQ-CSLSLNKQFYQNQVESSE 77 Query: 74 -------------KITSSAI---ISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 I SA I + + +++ +++ + ++I Sbjct: 78 IISKLKGKALQFETIEISAQKLSTKILAYTPSDVNEISLNYTLQLIKNILSKGYKIIECY 137 Query: 118 ALIDGRSIPEDLPCQ---------AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 G + + ++ ++ S+ + TR L++I Y Sbjct: 138 INPIGFKENLNEVLKKGLGLGNNDLKFIVGMHQTIIAAQIVSLQERNTR--LLQIQQDIY 195 Query: 169 P--DYGFDSHVGYPTAK-HQQVIKEKGPSCI-----HRLTFRPL 204 P G GYP+ ++ + + R ++ + Sbjct: 196 PSGQMG----SGYPSDALTREFLSKVSIPVFIYPQDIRFAWQTV 235 >gi|25011806|ref|NP_736201.1| ribonuclease HIII [Streptococcus agalactiae NEM316] gi|77413664|ref|ZP_00789848.1| ribonuclease HIII [Streptococcus agalactiae 515] gi|73917856|sp|Q8E3J2|RNH3_STRA3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|24413347|emb|CAD47426.1| Unknown [Streptococcus agalactiae NEM316] gi|77160264|gb|EAO71391.1| ribonuclease HIII [Streptococcus agalactiae 515] Length = 297 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 37/213 (17%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + VVA+ + ++ G+ DSK ++ +K ++ Sbjct: 72 ESCSSETQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLGVGDSKTLTDQKIKQ 131 Query: 71 LYEKITSSAIISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIP 115 + + + S Q ++ ++A + E +++ Sbjct: 132 IAPLLEKAIPHKALLLSPQKYNQVVGPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 191 Query: 116 RSALIDGRSIPEDLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + K ++ L++A +SIIA R+ + +K Sbjct: 192 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIA---RNLFLENLNKLSD 248 Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196 D G+ G HQ Q++K G S + Sbjct: 249 DVGYKLPSGAG---HQSDKVASQLLKAYGISSL 278 >gi|330719016|ref|ZP_08313616.1| ribonuclease HIII [Leuconostoc fallax KCTC 3537] Length = 214 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 26/166 (15%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIISI 83 G DEVG GA GP+ AA+ + +N G+ DSK ++ ++ KI + + Sbjct: 3 GSDEVGAGAYFGPLTTAAVYISQDNLDWVRQLGVADSKTLTDHDMIKMAPKIIAHLPHHV 62 Query: 84 SSASHQYI------DKHNIHKATLDAIYHAVENLQV----------------IPRSALID 121 + + + N KA ++ + Sbjct: 63 VNLLPEKYNAIQPQNNVNQMKAISHNFALHKVLEKIAPQKPQAILIDQFALPQTYYKHLT 122 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKK 167 + + + K + LS+AAASI+A+ + M+ + Sbjct: 123 NANQQPIVRENVYFTTKAEQYHLSVAAASILARYVELQTMKKLSAE 168 >gi|47458958|ref|YP_015820.1| ribonuclease HII [Mycoplasma mobile 163K] gi|47458286|gb|AAT27609.1| ribonuclease HII [Mycoplasma mobile 163K] Length = 227 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 5/102 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAIIS 82 G DE G G P+V A+ L+P N I DSK ++ KK +E+ +++ S Sbjct: 9 IGSDETGVGDYLSPIVACAVFLNPENISKINKLDIKDSKLLTDKKIKEIAKELKKLVSHS 68 Query: 83 ISSASHQYIDK-HNIHKATLDAIYHAVENLQVIPRSALIDGR 123 I+ S + + + A ++ ++++ + + Sbjct: 69 INYFSQKGYNNLNKFFNAHEIKMFLHLKSINFLEQKHQNIDY 110 >gi|320528430|ref|ZP_08029592.1| ribonuclease HIII [Solobacterium moorei F0204] gi|320131344|gb|EFW23912.1| ribonuclease HIII [Solobacterium moorei F0204] Length = 289 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 48/159 (30%), Gaps = 5/159 (3%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITS 77 N +P AG DEVG G GPV V A + ++ + G+ DSK++S ++ + Sbjct: 78 NHYPQAGSDEVGTGDYFGPVCVCASYVTKDDVDFLVKLGVRDSKQMSDADMLKIGPLLME 137 Query: 78 SAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 S+ Q ++ + + + D + Sbjct: 138 RIPHSLLIVPPQKYNQVHEANNLNAIKAKLHNQAYINLAKKIELPSFKVIDQFTPETSYY 197 Query: 138 KGDSISLSIAAASIIAKVTRDRLM-RIAHKKYPDYGFDS 175 + + D+ + YGF Sbjct: 198 RYLKNEPQLIRGIHFETKAEDKYLSVAVGSIVSRYGFLK 236 >gi|209559934|ref|YP_002286406.1| ribonuclease HIII [Streptococcus pyogenes NZ131] gi|226741383|sp|B5XI49|RNH3_STRPZ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|209541135|gb|ACI61711.1| Ribonuclease HIII [Streptococcus pyogenes NZ131] Length = 300 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 28/183 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + ++ Q++ + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTA 182 +A Sbjct: 261 GSA 263 >gi|139473162|ref|YP_001127877.1| ribonuclease HIII [Streptococcus pyogenes str. Manfredo] gi|166226677|sp|A2RCQ5|RNH3_STRPG RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|134271408|emb|CAM29628.1| ribonuclease HIII [Streptococcus pyogenes str. Manfredo] Length = 300 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 28/183 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + ++ Q++ + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTA 182 +A Sbjct: 261 GSA 263 >gi|94995019|ref|YP_603117.1| ribonuclease HIII [Streptococcus pyogenes MGAS10750] gi|166226676|sp|Q1J513|RNH3_STRPF RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|94548527|gb|ABF38573.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10750] Length = 300 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 28/183 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + ++ Q++ + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKSHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTA 182 +A Sbjct: 261 GSA 263 >gi|94989199|ref|YP_597300.1| ribonuclease HIII [Streptococcus pyogenes MGAS9429] gi|94993086|ref|YP_601185.1| ribonuclease HIII [Streptococcus pyogenes MGAS2096] gi|166226673|sp|Q1JA20|RNH3_STRPB RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|166226674|sp|Q1JK67|RNH3_STRPC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|94542707|gb|ABF32756.1| ribonuclease HIII [Streptococcus pyogenes MGAS9429] gi|94546594|gb|ABF36641.1| Ribonuclease HIII [Streptococcus pyogenes MGAS2096] Length = 300 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 28/183 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + ++ Q++ + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTA 182 +A Sbjct: 261 GSA 263 >gi|15675667|ref|NP_269841.1| ribonuclease HIII [Streptococcus pyogenes M1 GAS] gi|19746773|ref|NP_607909.1| ribonuclease HIII [Streptococcus pyogenes MGAS8232] gi|50914922|ref|YP_060894.1| ribonuclease HIII [Streptococcus pyogenes MGAS10394] gi|71911377|ref|YP_282927.1| ribonuclease HIII [Streptococcus pyogenes MGAS5005] gi|54039253|sp|P66678|RNH3_STRP8 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|54042176|sp|P66677|RNH3_STRP1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|73917858|sp|Q5XA52|RNH3_STRP6 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|13622880|gb|AAK34562.1| putative ribonuclease HIII [Streptococcus pyogenes M1 GAS] gi|19749005|gb|AAL98408.1| putative ribonuclease HIII [Streptococcus pyogenes MGAS8232] gi|50903996|gb|AAT87711.1| Ribonuclease HIII [Streptococcus pyogenes MGAS10394] gi|71854159|gb|AAZ52182.1| ribonuclease HIII [Streptococcus pyogenes MGAS5005] Length = 300 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 28/183 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + ++ Q++ + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTA 182 +A Sbjct: 261 GSA 263 >gi|56808625|ref|ZP_00366352.1| COG1039: Ribonuclease HIII [Streptococcus pyogenes M49 591] Length = 300 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 28/183 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + ++ Q++ + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTA 182 +A Sbjct: 261 GSA 263 >gi|332686770|ref|YP_004456544.1| ribonuclease HIII [Melissococcus plutonius ATCC 35311] gi|332370779|dbj|BAK21735.1| ribonuclease HIII [Melissococcus plutonius ATCC 35311] Length = 309 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81 V G DEVG G+ GP+ V A + +NI G+ DSK ++ + +L E + Sbjct: 93 VLGSDEVGNGSYFGPLTVCAAYVAKDNIKMLKAAGVKDSKNLTDNRIMQLAEMLKEKIPF 152 Query: 82 SISSASHQYIDK 93 + + + ++ Sbjct: 153 KLLIVTPEKYNQ 164 >gi|16079914|ref|NP_390740.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168] gi|221310803|ref|ZP_03592650.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168] gi|221315128|ref|ZP_03596933.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320046|ref|ZP_03601340.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. JH642] gi|221324328|ref|ZP_03605622.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. SMY] gi|7227926|sp|P94541|RNH3_BACSU RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|1770032|emb|CAA99565.1| hypothetical protein [Bacillus subtilis] gi|2635327|emb|CAB14822.1| ribonuclease HIII [Bacillus subtilis subsp. subtilis str. 168] Length = 313 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 36/205 (17%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V +D +P G+ DSK + + E+ + + Sbjct: 96 VIGSDEVGTGDYFGPMTVVCAYVDKTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPY 155 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIP--------------------RSALID 121 S+ ++ + + + + N + + Sbjct: 156 SLLVLKNEKYNSMQEKGMSQGKMKALLHNQAITHLLRKLDGVKPEAILIDQFAEPGVYFN 215 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + + + + K + I L++AAASIIA R + K G G Sbjct: 216 HLKGRDIVKERTYFSTKAEGIHLAVAAASIIA---RYSFLMEMDKLSRAAGMTLPKGAG- 271 Query: 182 AKHQQ-----VIKEKGPSCIHRLTF 201 H +I +KG S + TF Sbjct: 272 -PHVDEAAAKLILKKGASAL--RTF 293 >gi|314936680|ref|ZP_07844027.1| ribonuclease HIII [Staphylococcus hominis subsp. hominis C80] gi|313655299|gb|EFS19044.1| ribonuclease HIII [Staphylococcus hominis subsp. hominis C80] Length = 308 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 75/197 (38%), Gaps = 30/197 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 G DE G G GP+ V A + +I G++DSKK++ K EL E++ + S Sbjct: 92 IGSDEAGSGDYFGPLTVCAAYVSKEHIDILRTLGVDDSKKLTDTKIIELAEQLITFIPHS 151 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--------LPCQAF 134 + + ++ ++ + + + N + + ID +++ + + Sbjct: 152 LLTLNNTKYNERQALGWSQVKMKAVLHNEAIKNVTNKIDTKALDYIVIDQFAERNVYKRY 211 Query: 135 AVIKGDSISLSI---------AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 A+ + + A + + ++R ++ + FD G A H+ Sbjct: 212 ALSDLPFPNQTKFETKGESKSLAIAAASIISRYAFIKHMNSISKMMHFDIPKG---ASHK 268 Query: 186 ------QVIKEKGPSCI 196 Q+I++ S + Sbjct: 269 VDLIAAQIIEKYNISKL 285 >gi|228476267|ref|ZP_04060969.1| ribonuclease hiii [Staphylococcus hominis SK119] gi|228269670|gb|EEK11172.1| ribonuclease hiii [Staphylococcus hominis SK119] Length = 308 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 75/197 (38%), Gaps = 30/197 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 G DE G G GP+ V A + +I G++DSKK++ K EL E++ + S Sbjct: 92 IGSDEAGSGDYFGPLTVCAAYVSKEHIDILRTLGVDDSKKLTDTKIIELAEQLITFIPHS 151 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED--------LPCQAF 134 + + ++ ++ + + + N + + ID +++ + + Sbjct: 152 LLTLNNTKYNERQALGWSQVKMKAVLHNEAIKNVTNKIDTKALDYIVIDQFAERNVYKRY 211 Query: 135 AVIKGDSISLSI---------AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 A+ + + A + + ++R ++ + FD G A H+ Sbjct: 212 ALSDLPFPNQTKFETKGESKSLAIAAASIISRYAFIKHMNSISKMMHFDIPKG---ASHK 268 Query: 186 ------QVIKEKGPSCI 196 Q+I++ S + Sbjct: 269 VDLIAAQIIEKYNISKL 285 >gi|308174559|ref|YP_003921264.1| ribonuclease HIII [Bacillus amyloliquefaciens DSM 7] gi|307607423|emb|CBI43794.1| ribonuclease HIII [Bacillus amyloliquefaciens DSM 7] gi|328554482|gb|AEB24974.1| ribonuclease HIII [Bacillus amyloliquefaciens TA208] gi|328912886|gb|AEB64482.1| ribonuclease HIII [Bacillus amyloliquefaciens LL3] Length = 313 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 27/179 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ VA D G+ DSK + + E+ + + + Sbjct: 96 VIGSDEVGTGDYFGPITVACAYADKTKLSLMKELGVKDSKDLKDPQIIEIAKLLIKTIPY 155 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI---------------- 125 S+ ++ ++ + + + N + ++G Sbjct: 156 SLLVLKNEKYNQMQEKGMSQGKMKALLHNQAISNLLKKMNGVKPEAILIDQFAEPGIYFK 215 Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + + F K +SI LS+AAASIIA R + K + G G Sbjct: 216 HLSGRDIVKEKTFFSTKAESIHLSVAAASIIA---RYSFLLEMDKLSREAGMTIPKGAG 271 >gi|21911127|ref|NP_665395.1| ribonuclease HIII [Streptococcus pyogenes MGAS315] gi|28895188|ref|NP_801538.1| ribonuclease HIII [Streptococcus pyogenes SSI-1] gi|25091193|sp|Q8K5Y5|RNH3_STRP3 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|21905338|gb|AAM80198.1| putative ribonuclease HIII [Streptococcus pyogenes MGAS315] gi|28810433|dbj|BAC63371.1| putative ribonuclease HIII [Streptococcus pyogenes SSI-1] Length = 300 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 63/180 (35%), Gaps = 22/180 (12%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + ++ Q++ + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 PEDLPCQAFAVI---KGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + + A ++ + + R+ + + D G+ G +A Sbjct: 204 KHLKKEKNHFPDPLTFQEKAESHYLAVAVSSIIARNLFLDNLDQLGQDLGYQLPSGAGSA 263 >gi|229823968|ref|ZP_04450037.1| hypothetical protein GCWU000282_01272 [Catonella morbi ATCC 51271] gi|229786322|gb|EEP22436.1| hypothetical protein GCWU000282_01272 [Catonella morbi ATCC 51271] Length = 319 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSA 79 W + G DEVG G+ G + V A+ LD + G+ DSK ++ + +L K+ Sbjct: 98 WTIIGSDEVGNGSYFGALTVCAVYLDAGDRAKIEGLGVKDSKLLTDAQILDLAPKLRQVL 157 Query: 80 IISISSASHQYIDKHNI 96 ++ S ++ N Sbjct: 158 THELTICSPAKYNEANK 174 >gi|154686997|ref|YP_001422158.1| ribonuclease HIII [Bacillus amyloliquefaciens FZB42] gi|166226670|sp|A7Z7F1|RNH3_BACA2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|154352848|gb|ABS74927.1| RnhC [Bacillus amyloliquefaciens FZB42] Length = 313 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 27/179 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ VA D G+ DSK + + E+ + + + Sbjct: 96 VIGSDEVGTGDYFGPITVACAYADKTKLSLMKELGVKDSKDLKDPQIIEIAKLLIKTIPY 155 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI---------------- 125 S+ ++ ++ + + + N + ++G Sbjct: 156 SLLVLKNEKYNQMQEKGMSQGKMKALLHNQAISNLLRKMNGVKPEAILIDQFAEPGIYFK 215 Query: 126 ----PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + + F K +SI LS+AAASIIA R + K + G G Sbjct: 216 HLSGRDIVKEKTFFSTKAESIHLSVAAASIIA---RYSFLIEMDKLSREAGMTIPKGAG 271 >gi|62184923|ref|YP_219708.1| ribonuclease HIII [Chlamydophila abortus S26/3] gi|73917845|sp|Q5L6I4|RNH3_CHLAB RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|62147990|emb|CAH63741.1| ribonuclease hIII [Chlamydophila abortus S26/3] Length = 300 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 10/88 (11%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKK 67 +E +R + G+DE G+G GP+ +A + N I DSK ++ + Sbjct: 80 RMEKDLRPR-----LGVDESGKGDFFGPLCIAGVYARDAETLKNLYKTKIQDSKMLNDNQ 134 Query: 68 REELYEKITSSAIISISSASHQYIDKHN 95 L + I + + + + ++ Sbjct: 135 ILALAKTIRACSTYDVMILYPEKYNELY 162 >gi|319745672|gb|EFV97971.1| ribonuclease HIII [Streptococcus agalactiae ATCC 13813] Length = 292 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 78/213 (36%), Gaps = 37/213 (17%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E+ E P+ G DEVG G+ G + VVA+ + ++ + DSK ++ +K ++ Sbjct: 67 ESCSSESQDIPIIGTDEVGNGSYFGGLAVVASFVTPKDHAYLKKLEVGDSKTLTDQKIKQ 126 Query: 71 LYEKITSSAIISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIP 115 + + + S Q ++ ++A + E +++ Sbjct: 127 IAPLLEKAIPHKALLLSPQKYNQVVGPNNKHNAVSVKVALHNQAIFLLLQDGFEPEKIVI 186 Query: 116 RSALIDGRSIPEDLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + + K ++ L++A +SIIA R+ + +K Sbjct: 187 DAFTSSKNYQNYLKNEKNQFKQTITLEEKAENKYLAVAVSSIIA---RNLFLENLNKLSD 243 Query: 170 DYGFDSHVGYPTAKHQ------QVIKEKGPSCI 196 D G+ G HQ Q++K G S + Sbjct: 244 DVGYKLPSGAG---HQSDKVASQLLKAYGISSL 273 >gi|328956934|ref|YP_004374320.1| ribonuclease HIII [Carnobacterium sp. 17-4] gi|328673258|gb|AEB29304.1| ribonuclease HIII [Carnobacterium sp. 17-4] Length = 332 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 63/182 (34%), Gaps = 27/182 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ V A D + G+ DSK + + + + + + Sbjct: 115 WSVIGSDEVGTGSYFGPLTVVAAYADHSQLALLKELGVRDSKDMKDPEIIRVAKDLITFL 174 Query: 80 IISISSASHQYI------DKHNIHKATLDAIYHAVENLQVIPRSAL----------IDGR 123 S+ + + KA L ++ P+ Sbjct: 175 PHSLLNVMPEKYNTIQPTMTQGKMKAILHNQALGHVLEKISPQKPDGILIDQFELPATYF 234 Query: 124 SIPEDLPCQ----AFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 D P Q + KG+ LS+AAASIIA R ++ + GF G Sbjct: 235 KHINDQPKQIKESVYFQTKGEGHHLSVAAASIIA---RYAFLKGLDELSAKAGFKIPSGA 291 Query: 180 PT 181 + Sbjct: 292 GS 293 >gi|306826719|ref|ZP_07460021.1| ribonuclease HIII [Streptococcus pyogenes ATCC 10782] gi|304431008|gb|EFM34015.1| ribonuclease HIII [Streptococcus pyogenes ATCC 10782] Length = 300 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 69/183 (37%), Gaps = 28/183 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSKK+S K +++ + Sbjct: 84 PIVGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIP 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + ++ Q++ + Sbjct: 144 HQSLLLSPKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQSNYE 203 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 P K +S L++A +SIIA R+ + + D G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIA---RNLFLDNLDQLGQDLGYQLPSGA 260 Query: 180 PTA 182 +A Sbjct: 261 GSA 263 >gi|332364764|gb|EGJ42533.1| ribonuclease HIII [Streptococcus sanguinis SK1059] Length = 296 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 28/214 (13%) Query: 2 FCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGI 57 F PE+ + +N + G DEVG G+ G + VVA+ + + G+ Sbjct: 64 FFGHQPEKSS----SSTASQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGV 118 Query: 58 NDSKKISHKKREELYEKITSSAIISISSASHQYIDKHN-------------IHKATLDAI 104 DSK ++ K +L + S + ++ ++A + Sbjct: 119 GDSKTLNDSKIHQLAPVLKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLL 178 Query: 105 YHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLM 161 + +++ + + I + A ++ + + RD + Sbjct: 179 QKGINPEKIVIDAFTSKQNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFL 238 Query: 162 RIAHKKYPDYGFDSHVGYPTA-KHQQV--IKEKG 192 + G+ G + H ++ G Sbjct: 239 ENLENLSQELGYTLPSGAGSKSDHIASQILRAYG 272 >gi|269302868|gb|ACZ32968.1| ribonuclease HIII [Chlamydophila pneumoniae LPCoLN] Length = 298 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 61/184 (33%), Gaps = 27/184 (14%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGINDSKKISHKKREELYE 73 E+++ P G+DE G+G GP+ +A + IL + DSK + K L Sbjct: 82 EQDLRPRLGVDESGKGDFFGPLCIAGVYASNAEILKKLYENK-VQDSKNLKDTKIASLAR 140 Query: 74 KITSSAIISISSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I S + + + ++ + + + D +I + Sbjct: 141 IIRSLCVCDVIILYPEKYNELYGKFQNLNTLLAWAHATIINNLAPKPAGDVFAISDQFAA 200 Query: 132 QAFAVIKG---------------DSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH 176 + ++K + +AAASI+A RD ++ K Y Sbjct: 201 SEYTLLKALQKKETDITLIQKPRAEQDVVVAAASILA---RDAFVQSIQKLEEQYQVQLP 257 Query: 177 VGYP 180 G Sbjct: 258 KGAG 261 >gi|329942650|ref|ZP_08291429.1| ribonuclease HIII [Chlamydophila psittaci Cal10] gi|332287245|ref|YP_004422146.1| ribonuclease HIII [Chlamydophila psittaci 6BC] gi|313847833|emb|CBY16826.1| ribonuclease hIII [Chlamydophila psittaci RD1] gi|325506576|gb|ADZ18214.1| ribonuclease HIII [Chlamydophila psittaci 6BC] gi|328814910|gb|EGF84899.1| ribonuclease HIII [Chlamydophila psittaci Cal10] gi|328914491|gb|AEB55324.1| ribonuclease HIII [Chlamydophila psittaci 6BC] Length = 300 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 10/88 (11%) Query: 13 ELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKK 67 +E +R + G+DE G+G GP+ +A + N I DSK ++ + Sbjct: 80 RMEKDLRPR-----LGVDESGKGDFFGPLCIAGVYARDAETLKNLYKTKIQDSKMLNDNQ 134 Query: 68 REELYEKITSSAIISISSASHQYIDKHN 95 L + I + + + + ++ Sbjct: 135 ILSLAKTIRACSTYDVMILYPEKYNELY 162 >gi|149183057|ref|ZP_01861510.1| ribonuclease HIII [Bacillus sp. SG-1] gi|148849238|gb|EDL63435.1| ribonuclease HIII [Bacillus sp. SG-1] Length = 309 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 67/205 (32%), Gaps = 37/205 (18%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G GP+ V A + IP G+ DSK ++ +K + + + S S Sbjct: 95 IGSDEVGTGDFFGPITVVAAYVKKEQIPLLKELGVKDSKNLNDEKIIAIAKNLLSVIPYS 154 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS------------------ 124 + + + + I + N ++ I Sbjct: 155 LLICHNDKYNALQEKGMSQGKIKALLHNRAILNLLQKIAPEKPEAVLIDQFAEENTYYKY 214 Query: 125 ---IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 E KG+SI LS+AAASI+A R ++ K GF G Sbjct: 215 LAGQKEIHRENVLFSTKGESIHLSVAAASILA---RYAFVKEMDKLSALAGFPIPKGAGK 271 Query: 182 AKHQQV---IKEKG------PSCIH 197 I++ G + H Sbjct: 272 QVDIAGAKIIRKSGADELKKITKWH 296 >gi|89098885|ref|ZP_01171765.1| ribonuclease HIII [Bacillus sp. NRRL B-14911] gi|89086289|gb|EAR65410.1| ribonuclease HIII [Bacillus sp. NRRL B-14911] Length = 348 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 31/195 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G GP+ V A ++P G+ DSK + + + ++I Sbjct: 133 VIGSDEVGTGDYFGPITVVAAYAKKESLPLLKELGVKDSKHLKDDQIIRIAKEIKEVVPY 192 Query: 82 SISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS----------------- 124 S+ + + ++ + I + N + + Sbjct: 193 SLLTLKNSKYNQLQQSGMSQGKIKALLHNQAIGNVLKKMAPEKPEAILIDQFAKEDVYYR 252 Query: 125 ----IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 F K + I LS+AAASI+A R +R K + GF G Sbjct: 253 HLQGQSVIQRENVFFSTKAEGIHLSVAAASILA---RYAFLRYFDKLSEEAGFTLPKGAG 309 Query: 181 TAKHQQV---IKEKG 192 + IK KG Sbjct: 310 AQVDKAAARLIKAKG 324 >gi|317129873|ref|YP_004096155.1| ribonuclease HIII [Bacillus cellulosilyticus DSM 2522] gi|315474821|gb|ADU31424.1| ribonuclease HIII [Bacillus cellulosilyticus DSM 2522] Length = 340 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 57/182 (31%), Gaps = 32/182 (17%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIISI 83 G DE G G GP+ V L + +G+ DSK I+ E+ ++ S+ Sbjct: 127 GSDETGTGDYFGPMTVVCAHLSKEQMKAIESWGVRDSKMINDTTIREIAPRLVKQCTYSL 186 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC------------ 131 ++ ++ + + + ++ D S D Sbjct: 187 LVLKNEKYNELQERGMNQGQMKAMLHHQAIVNVMKKCDDESFTYDGVFIDQFVQPDRYFE 246 Query: 132 -------------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + K ++I S+AAASI+A R + K D G G Sbjct: 247 YLKVKGKSWTSKKPLYFATKAENIHPSVAAASILA---RYSFLNEMEKLERDIGLPLPKG 303 Query: 179 YP 180 Sbjct: 304 AG 305 >gi|281358639|ref|ZP_06245117.1| ribonuclease HIII [Victivallis vadensis ATCC BAA-548] gi|281314869|gb|EFA98904.1| ribonuclease HIII [Victivallis vadensis ATCC BAA-548] Length = 315 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 36/212 (16%) Query: 28 GIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKI-SHKKREELYEKITSSA--I 80 GIDE G+G GP+ +A + D P G DSK I S KK EL + I A Sbjct: 98 GIDESGKGDFFGPLCIAGVYADAETGPELRKLGCCDSKLIKSPKKILELAKGIREIARDQ 157 Query: 81 ISISSASHQYIDKHNIHK-------ATLDAIYHAVENLQVIPRSALIDGRS--------- 124 ++ + + ++ A A +V ++ + Sbjct: 158 YAVVNLPPETYNRLYDKIGNLNRLLAWGHARVIENLLEKVPECPRMLSDKFADESLIKRA 217 Query: 125 -IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + + K +S AA+ + R++ +R K ++G G Sbjct: 218 LMTRGKQIRMEQRTKAESDVAVAAASILA----REQFLRGMEKLSAEFGETFPKGAG-PL 272 Query: 184 HQQ----VIKEKGPSCIHR---LTFRPLRNLS 208 ++ ++++ GP R L F+ L+ Sbjct: 273 VRETGARILEKHGPGAFARCAKLHFKTYSELT 304 >gi|297620990|ref|YP_003709127.1| Ribonuclease HIII [Waddlia chondrophila WSU 86-1044] gi|297376291|gb|ADI38121.1| Ribonuclease HIII [Waddlia chondrophila WSU 86-1044] Length = 303 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 25/188 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82 GIDE G+G GP+ +A + + + I G+ DSK ++ K +L ++I ++ Sbjct: 96 IGIDEAGKGDFFGPLCIAGVYAEGDAISELKSAGVRDSKNMTEKNVFKLAKEIRKRCEVT 155 Query: 83 ISSASHQYIDKHN--IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF------ 134 + + ++ + ++ + I + Q Sbjct: 156 VVRMNPLKYNELYGKFKNLNHLLAWGHATAIENLVSKTGCKNVIIDQFAAEQVVIGALKK 215 Query: 135 -------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP---TAKH 184 L +AAASI+A R+ + K + G Sbjct: 216 KKLEVNLTQRHRGEEDLVVAAASILA---REAFVTELDKLSKQWEMTLPKGASRQVVKAG 272 Query: 185 QQVIKEKG 192 ++ G Sbjct: 273 VDFLRRFG 280 >gi|126652673|ref|ZP_01724834.1| ribonuclease HIII [Bacillus sp. B14905] gi|126590522|gb|EAZ84640.1| ribonuclease HIII [Bacillus sp. B14905] Length = 308 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 62/203 (30%), Gaps = 31/203 (15%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DE G G GP+ VAA+ + + G+ DSK +S ++ + ++ + Sbjct: 95 VLGSDETGTGDYFGPITVAAVYVPASKIELINELGVKDSKLLSDDYMRKIAPDLRAACVH 154 Query: 82 SISSASHQYIDK-------------HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 S+ ++ + +KA + + R + + Sbjct: 155 SVLVLRNEKYNSLQAKGYSQGKMKAMMHNKALQNTLTKMTPEKPECILIDQFAERGVYYN 214 Query: 129 L-----PCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 +V A + + + R ++ + G + G Sbjct: 215 YLKNEREIVQESVYFSTKAEQLHVAVATASILARAAFLKEMDRLSEIAGLELMKGASNKV 274 Query: 184 HQQV--I-KEKG------PSCIH 197 Q I +++G + H Sbjct: 275 DVQAARIWRKQGEEFLRSITKWH 297 >gi|121534428|ref|ZP_01666251.1| ribonuclease HIII [Thermosinus carboxydivorans Nor1] gi|121306921|gb|EAX47840.1| ribonuclease HIII [Thermosinus carboxydivorans Nor1] Length = 306 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 69/197 (35%), Gaps = 27/197 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK--------REELYEK 74 G DE G+G GP+V+AA+++D G+ DSK +S +K RE + + Sbjct: 97 IGSDESGKGDFFGPLVIAAVMVDAATAAALTASGVRDSKLLSDEKAKVLAQRIREICHGR 156 Query: 75 I----TSSAIISISSA-------SHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 + A ++ + ++ A + + ++ + A Sbjct: 157 FALVEITPAKYNVLYQRFRAEGKNLNHLLAWAHASAIEEVLTRTPCRFALVDKFADESLI 216 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 + +++ +I A + + + R+R + Y D G A Sbjct: 217 RSRLFAKGREITLVQAPRAEKNI-AVAAASILARERFLYWIELFRVQYKMDFPKGASAAV 275 Query: 184 HQQV---IKEKGPSCIH 197 ++ G +C+H Sbjct: 276 TDAARAFVQRYGKNCLH 292 >gi|330685731|gb|EGG97367.1| ribonuclease HIII [Staphylococcus epidermidis VCU121] Length = 259 Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 G DE G G GP+ V A + +++ G++DSKK++ K EL E++ Sbjct: 95 IGSDEAGSGDYFGPLTVCAAYVTKDHVKILKELGVDDSKKLTDAKIVELAEQL 147 >gi|239636364|ref|ZP_04677366.1| ribonuclease hiii [Staphylococcus warneri L37603] gi|239597719|gb|EEQ80214.1| ribonuclease hiii [Staphylococcus warneri L37603] Length = 309 Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKI 75 G DE G G GP+ V A + +++ G++DSKK++ K EL E++ Sbjct: 93 IGSDEAGSGDYFGPLTVCAAYVTKDHVKILKELGVDDSKKLTDAKIVELAEQL 145 >gi|161579047|ref|NP_296655.2| ribonuclease HIII [Chlamydia muridarum Nigg] gi|270285065|ref|ZP_06194459.1| ribonuclease HIII [Chlamydia muridarum Nigg] gi|270289090|ref|ZP_06195392.1| ribonuclease HIII [Chlamydia muridarum Weiss] gi|301336461|ref|ZP_07224663.1| ribonuclease HIII [Chlamydia muridarum MopnTet14] Length = 299 Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74 ++++ P G+DE G+G GP+ A + + I DSK IS K L Sbjct: 82 QQDLRPRIGVDESGKGDFFGPLCTAGVYAPSIKSIESLYEITICDSKLISDAKIPSLARS 141 Query: 75 ITSSAIISISSASHQYID 92 I S + + + + Sbjct: 142 IRSLCTCKVITLFPEKYN 159 >gi|14195187|sp|Q9PL32|RNH3_CHLMU RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|7190317|gb|AAF39144.1| ribonuclease HII [Chlamydia muridarum Nigg] Length = 301 Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74 ++++ P G+DE G+G GP+ A + + I DSK IS K L Sbjct: 84 QQDLRPRIGVDESGKGDFFGPLCTAGVYAPSIKSIESLYEITICDSKLISDAKIPSLARS 143 Query: 75 ITSSAIISISSASHQYID 92 I S + + + + Sbjct: 144 IRSLCTCKVITLFPEKYN 161 >gi|313633654|gb|EFS00411.1| ribonuclease hiii [Listeria seeligeri FSL N1-067] Length = 296 Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 67/199 (33%), Gaps = 35/199 (17%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A ++ +P G+ DSK + + + EKI Sbjct: 79 KNVLGSDEVGTGDFFGPITVCAAYVEETIMPLLKELGVKDSKAMKDPEICRIAEKIMPVV 138 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------- 125 S+ + ++ + + N + I Sbjct: 139 PHSVLLCPNPKYNEMQSRGMNQGQMKALLHNRALENVLKKIAPTKPEAILIDQFAEKNTY 198 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P + F K + + LS+AAASIIA R + ++ + + G G Sbjct: 199 YRYLAKEPTIIRENVFFATKAEGLHLSVAAASIIA---RYKFVQAFEEMSREVGILLPKG 255 Query: 179 YPTAKHQ-----QVIKEKG 192 H ++I+ G Sbjct: 256 AG--PHVDTVAAEIIERFG 272 >gi|289434477|ref|YP_003464349.1| ribonuclease HIII, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170721|emb|CBH27261.1| ribonuclease HIII, putative [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 296 Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 67/199 (33%), Gaps = 35/199 (17%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 V G DEVG G GP+ V A ++ +P G+ DSK + + + EKI Sbjct: 79 KNVLGSDEVGTGDFFGPITVCAAYVEETIMPLLKELGVKDSKAMKDPEICRIAEKIMPVV 138 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI-------------- 125 S+ + ++ + + N + I Sbjct: 139 PHSVLLCPNPKYNEMQSRGMNQGQMKALLHNRALENVLKKIAPTKPEAILIDQFAEKNTY 198 Query: 126 -------PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 P + F K + + LS+AAASIIA R + ++ + + G G Sbjct: 199 YRYLAKEPTIIRENVFFATKAEGLHLSVAAASIIA---RYKFVQAFEEMSREVGILLPKG 255 Query: 179 YPTAKHQ-----QVIKEKG 192 H ++I+ G Sbjct: 256 AG--PHVDTVAAEIIERFG 272 >gi|197294741|ref|YP_001799282.1| Ribonuclease HII family protein [Candidatus Phytoplasma australiense] gi|171854068|emb|CAM12041.1| Ribonuclease HII family protein [Candidatus Phytoplasma australiense] Length = 301 Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKRE 69 E + G DEVG G + GP++V ++ + P NI +++SK++ K Sbjct: 77 EKKNTKSYYLESIGSDEVGTGDVFGPIIVCSVYIPPQNITFFQKKIFLSESKQMLDKNII 136 Query: 70 ELYEKITSSAIISISSASHQYIDK 93 + I I +I + +K Sbjct: 137 QTVPLIMDKVIKTIVTLKPSKYNK 160 >gi|242373372|ref|ZP_04818946.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W1] gi|242348735|gb|EES40337.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W1] Length = 311 Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 63/194 (32%), Gaps = 30/194 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR----EELYEKITS- 77 G DE G G GP+ V A + N G++DSKK++ K E+L I Sbjct: 95 IGSDEAGSGDYFGPLTVCAAYVSEKNAQVLKTLGVDDSKKLTDTKIVEIAEQLITFIPHS 154 Query: 78 -----SAIIS----ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + + + + + + +E+L I Sbjct: 155 LLTLDNVKYNERQKMGWSQVKMKAVLHNEAIKNVTQKIEIEDLDYIVIDQFAKREVYQHY 214 Query: 129 ------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 P + KG+S SL+IAAASII+ R ++ D G Sbjct: 215 ALSELPFPKKTKFETKGESKSLAIAAASIIS---RYAFVKHMDHITRQINMDVPKGASNK 271 Query: 183 KHQQV---IKEKGP 193 I++ G Sbjct: 272 VDLFAAKVIQKYGI 285 >gi|315222238|ref|ZP_07864144.1| ribonuclease HIII [Streptococcus anginosus F0211] gi|315188571|gb|EFU22280.1| ribonuclease HIII [Streptococcus anginosus F0211] Length = 296 Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 65/191 (34%), Gaps = 26/191 (13%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E + P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K + Sbjct: 72 EKTTSHRQNCPLIGTDEVGNGSYFGGLAVVASFVTPEQHDFLRKLGVGDSKTLTDQKIRQ 131 Query: 71 LYEKITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRS 117 + + S + ++ ++A + V+ +++ + Sbjct: 132 IVPLLKEKIQHQALLLSPKKYNQVIASGYNAVSVKVALHNQAIYLLLQTGVQPEKIVIDA 191 Query: 118 ALIDGRSIPEDLPC------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDY 171 D K + L++A +S+IA RD + + Sbjct: 192 FTSDKNYQKYLQQESNRFSNPITLEKKAEGKYLAVAVSSMIA---RDLFLENLENLSQEL 248 Query: 172 GFDSHVGYPTA 182 G++ G Sbjct: 249 GYELPSGAGAK 259 >gi|110004588|emb|CAK98925.1| putative ribonuclease hIII protein [Spiroplasma citri] Length = 299 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 23/171 (13%) Query: 26 VAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAII 81 V G DEVG G + GP+VV A L I DSKK++ ++ L KI Sbjct: 90 VIGNDEVGVGDIFGPLVVTASYLPIATFNELSKLPIKDSKKMAKQQILSLAPKIKKMVKS 149 Query: 82 SISSASHQYIDKH--------------NIHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 +++ +K + + + N + + + + Sbjct: 150 ITIIINNELYNKWYTKYQNAHIIKTLAHNQALVQLLAKYQLTNKTIFIDQFVNETKYFEY 209 Query: 128 DLPCQAFAVIKGDSISLSIA-----AASIIAKVTRDRLMRIAHKKYPDYGF 173 + ++IK + + ++ A + A ++R + ++ Y Sbjct: 210 LQQTKMSSIIKDNLVFITKGEEKSLAIACSAILSRAVFLIKINELETKYHL 260 >gi|182683372|ref|YP_001835119.1| ribonuclease HIII [Streptococcus pneumoniae CGSP14] gi|303255384|ref|ZP_07341450.1| ribonuclease HIII [Streptococcus pneumoniae BS455] gi|303259481|ref|ZP_07345458.1| ribonuclease HIII [Streptococcus pneumoniae SP-BS293] gi|303262344|ref|ZP_07348287.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS292] gi|303264762|ref|ZP_07350679.1| ribonuclease HIII [Streptococcus pneumoniae BS397] gi|303266601|ref|ZP_07352486.1| ribonuclease HIII [Streptococcus pneumoniae BS457] gi|303268834|ref|ZP_07354621.1| ribonuclease HIII [Streptococcus pneumoniae BS458] gi|238691129|sp|B2ILU9|RNH3_STRPS RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|73916724|gb|AAZ93230.1| RNase HII [Streptococcus pneumoniae] gi|73916784|gb|AAZ93260.1| RNase HII [Streptococcus pneumoniae] gi|182628706|gb|ACB89654.1| ribonuclease HIII [Streptococcus pneumoniae CGSP14] gi|301801316|emb|CBW33999.1| ribonuclease HIII [Streptococcus pneumoniae INV200] gi|302597629|gb|EFL64709.1| ribonuclease HIII [Streptococcus pneumoniae BS455] gi|302636443|gb|EFL66935.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS292] gi|302639415|gb|EFL69873.1| ribonuclease HIII [Streptococcus pneumoniae SP-BS293] gi|302641615|gb|EFL71975.1| ribonuclease HIII [Streptococcus pneumoniae BS458] gi|302643845|gb|EFL74107.1| ribonuclease HIII [Streptococcus pneumoniae BS457] gi|302645629|gb|EFL75859.1| ribonuclease HIII [Streptococcus pneumoniae BS397] Length = 290 Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLERELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|29840058|ref|NP_829164.1| ribonuclease HIII [Chlamydophila caviae GPIC] gi|33301625|sp|Q823W2|RNH3_CHLCV RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|29834406|gb|AAP05042.1| ribonuclease HIII [Chlamydophila caviae GPIC] Length = 300 Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 5/81 (6%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74 E+++ P G+DE G+G GP+ +A + N I DSK ++ + L + Sbjct: 82 EEDLRPRLGVDESGKGDFFGPLCIAGVYAKDEETLKNLYKTKIQDSKLLNDAQILSLAKT 141 Query: 75 ITSSAIISISSASHQYIDKHN 95 I +S + + ++ Sbjct: 142 IRASCSCDVMILYPEKYNELY 162 >gi|168482640|ref|ZP_02707592.1| ribonuclease hiii [Streptococcus pneumoniae CDC1873-00] gi|172043660|gb|EDT51706.1| ribonuclease hiii [Streptococcus pneumoniae CDC1873-00] gi|332203574|gb|EGJ17641.1| ribonuclease HIII [Streptococcus pneumoniae GA47368] Length = 293 Score = 48.1 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----IT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ I Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDFFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916788|gb|AAZ93262.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 48.1 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----IT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ I Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDFFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|225860427|ref|YP_002741936.1| ribonuclease HIII [Streptococcus pneumoniae Taiwan19F-14] gi|298229684|ref|ZP_06963365.1| ribonuclease HIII [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254632|ref|ZP_06978218.1| ribonuclease HIII [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502197|ref|YP_003724137.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A] gi|254808019|sp|C1CPR4|RNH3_STRZT RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225727225|gb|ACO23076.1| ribonuclease hiii [Streptococcus pneumoniae Taiwan19F-14] gi|298237792|gb|ADI68923.1| ribonuclease H [Streptococcus pneumoniae TCH8431/19A] gi|327390813|gb|EGE89153.1| ribonuclease HIII [Streptococcus pneumoniae GA04375] Length = 293 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGNRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916754|gb|AAZ93245.1| RNase HII [Streptococcus pneumoniae] gi|73916758|gb|AAZ93247.1| RNase HII [Streptococcus pneumoniae] gi|73916760|gb|AAZ93248.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGNRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916702|gb|AAZ93219.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----IT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ I Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDTFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|67480158|gb|AAY67993.1| ribonuclease HI large subunit [Oxyuranus scutellatus scutellatus] Length = 211 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 16/121 (13%) Query: 97 HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT 156 A + A + + + + + + K DS+ +++AASI AKV Sbjct: 38 QHALDSGVQLAEVFVDTVGPAEKYQEKLKQQFPELEVTVRAKADSLFPTVSAASICAKVA 97 Query: 157 RDR------LMRIAHKKYPDYGFDSHVGYPT-AKHQQVIKE-----KGPSCIHRLTFRPL 204 RDR + DYG GYP K ++ + + G R ++ Sbjct: 98 RDRIVKNWKFLENLEDTEMDYG----SGYPNDPKTKEWLAQNLDPIFGYPQFVRFSWSTA 153 Query: 205 R 205 + Sbjct: 154 Q 154 >gi|325689446|gb|EGD31451.1| ribonuclease HIII [Streptococcus sanguinis SK115] gi|325693764|gb|EGD35683.1| ribonuclease HIII [Streptococcus sanguinis SK150] Length = 296 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 61/197 (30%), Gaps = 24/197 (12%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK 74 +N + G DEVG G+ G + V A + P+ G+ DSK ++ K +L Sbjct: 77 ASQNFALI-GTDEVGNGSYFGGLTVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPV 135 Query: 75 ITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALID 121 + S + ++ ++A + + +++ + Sbjct: 136 LKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQ 195 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + I + A ++ + + RD + + G+ G Sbjct: 196 QNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYTLPSG 255 Query: 179 YPTA-KHQQV--IKEKG 192 + H ++ G Sbjct: 256 AGSKSDHVASQILQAYG 272 >gi|225856132|ref|YP_002737643.1| ribonuclease HIII [Streptococcus pneumoniae P1031] gi|254808018|sp|C1CIQ5|RNH3_STRZP RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225725696|gb|ACO21548.1| ribonuclease hiii [Streptococcus pneumoniae P1031] Length = 290 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 20/178 (11%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 DLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + A ++ + + RD + + G+ G TA Sbjct: 199 LAQEANRFSNSISLEEKAEGKYLAVAVSSVIARDLFLENLENLGRELGYQLPSGAGTA 256 >gi|73916714|gb|AAZ93225.1| RNase HII [Streptococcus pneumoniae] gi|73916734|gb|AAZ93235.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----IT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ I Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|15900322|ref|NP_344926.1| ribonuclease HIII [Streptococcus pneumoniae TIGR4] gi|111657623|ref|ZP_01408357.1| hypothetical protein SpneT_02001177 [Streptococcus pneumoniae TIGR4] gi|18314321|sp|O07874|RNH3_STRPN RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|14971871|gb|AAK74566.1| ribonuclease HIII [Streptococcus pneumoniae TIGR4] Length = 293 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK----IT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ I Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|219850709|ref|YP_002465141.1| ribonuclease HIII [Methanosphaerula palustris E1-9c] gi|219544968|gb|ACL15418.1| ribonuclease HIII [Methanosphaerula palustris E1-9c] Length = 318 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 65/217 (29%), Gaps = 41/217 (18%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDP----NNIPFGINDSKKISHKKREELYEKITSSAI 80 + G DE G+G GP+VVAA+ LD G+ DSK +S ++ L + A+ Sbjct: 105 LLIGSDESGKGDYFGPLVVAAVCLDQQGAARLRAAGVTDSKALSDQENLSLASVVRKVAV 164 Query: 81 -ISISSASHQYIDKHNIHKAT--------------------LDAIYHAVENLQVIPRSAL 119 IS+ + + A + + Sbjct: 165 SISVKVLLPEEYNARYAATARAGGTLNDLLASVHAEAIQRVAAESGCTTVLVDQFAGERV 224 Query: 120 IDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 +D + + + + AA+ + R R + Y G Sbjct: 225 LDDLLAVRYPGLRVVQRPRAEQETPVAAASVLA----RARFLEDLDLLGMPYNVHLLKGA 280 Query: 180 P---TAKHQQVIKEKG------PSCIHRLTFRPLRNL 207 T + Q++ G + IH FR + Sbjct: 281 SAGVTKQAAQMVDRYGSGVLRTVAKIH---FRTTSKI 314 >gi|70726822|ref|YP_253736.1| ribonuclease HIII [Staphylococcus haemolyticus JCSC1435] gi|123659928|sp|Q4L5E5|RNH3_STAHJ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|68447546|dbj|BAE05130.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 310 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 65/194 (33%), Gaps = 30/194 (15%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR----EELYEKITSS 78 G DE G G GP+ V A + N+ G++DSKK++ +K E+L I S Sbjct: 94 IGSDEAGSGDYFGPLTVCAAYVSKENVKILKTLGVDDSKKLNDQKIIELAEQLITFIPHS 153 Query: 79 -------------AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSI 125 AI + I T + + + + + + Sbjct: 154 LLTLDNPKYNDRQAIGWSQVKMKAELHNEAIKNVTQKINCNELNYIVIDQFAVRGVYQRY 213 Query: 126 ---PEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 P + KG+S SL+IAAASII+ R ++ D G Sbjct: 214 ALSSLPYPEKTKFETKGESKSLAIAAASIIS---RYAFVKHMDHISHKMKQDIPKGASNK 270 Query: 183 KHQQV---IKEKGP 193 I + G Sbjct: 271 VDLIAAQIIDKHGI 284 >gi|323490479|ref|ZP_08095686.1| ribonuclease HIII [Planococcus donghaensis MPA1U2] gi|323395883|gb|EGA88722.1| ribonuclease HIII [Planococcus donghaensis MPA1U2] Length = 309 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 59/215 (27%), Gaps = 36/215 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKIS-HKKREELYEKITSS 78 V G DE G G GP+ VAA + + G+ DSK+++ R+ + + Sbjct: 89 QSVLGSDETGTGDFFGPITVAACFVPSDKVELAYELGVKDSKQLTDDWMRKVAPDLKRAF 148 Query: 79 AIISISSASHQYIDKHNIHKATLDAIY-----------HAVENLQVIPRSALIDGRSIPE 127 A ++ + +Y + + + Sbjct: 149 AHSVLTLKNDKYNKVQAQGWSQGKIKALLHNQALKHVLAKIAPEKPDAILIDQFAERSIY 208 Query: 128 DLPCQAFAVIKGDSISLSIAA------ASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + I +++ S A + + + R + + + G G Sbjct: 209 YKHIKEETEIVRENVLFSTKAEGLHVSVACASIIARVAFLDEMDRMSTEAGVTLPKGAG- 267 Query: 182 AKHQQV----IKEKGP------SCIHRLTFRPLRN 206 + + + G + H F + Sbjct: 268 KIVDEAAAKILLKHGVDYLKGLTKFH---FANTKK 299 >gi|148983801|ref|ZP_01817120.1| ribonuclease HIII [Streptococcus pneumoniae SP3-BS71] gi|149003498|ref|ZP_01828372.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS69] gi|149008008|ref|ZP_01831565.1| ribonuclease HIII [Streptococcus pneumoniae SP18-BS74] gi|237650379|ref|ZP_04524631.1| ribonuclease HIII [Streptococcus pneumoniae CCRI 1974] gi|237822067|ref|ZP_04597912.1| ribonuclease HIII [Streptococcus pneumoniae CCRI 1974M2] gi|147758434|gb|EDK65433.1| ribonuclease HIII [Streptococcus pneumoniae SP14-BS69] gi|147760520|gb|EDK67496.1| ribonuclease HIII [Streptococcus pneumoniae SP18-BS74] gi|147923948|gb|EDK75060.1| ribonuclease HIII [Streptococcus pneumoniae SP3-BS71] gi|301799504|emb|CBW32051.1| ribonuclease HIII [Streptococcus pneumoniae OXC141] gi|332076846|gb|EGI87308.1| ribonuclease HIII [Streptococcus pneumoniae GA17545] gi|332077687|gb|EGI88148.1| ribonuclease HIII [Streptococcus pneumoniae GA41301] Length = 293 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916704|gb|AAZ93220.1| RNase HII [Streptococcus pneumoniae] gi|73916740|gb|AAZ93238.1| RNase HII [Streptococcus pneumoniae] gi|73916750|gb|AAZ93243.1| RNase HII [Streptococcus pneumoniae] gi|73916782|gb|AAZ93259.1| RNase HII [Streptococcus pneumoniae] gi|73916786|gb|AAZ93261.1| RNase HII [Streptococcus pneumoniae] gi|73916808|gb|AAZ93272.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|194246531|ref|YP_002004170.1| Ribonuclease HIII [Candidatus Phytoplasma mali] gi|254808013|sp|B3R0F3|RNH3_PHYMT RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|193806888|emb|CAP18317.1| Ribonuclease HIII [Candidatus Phytoplasma mali] Length = 288 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G + G +VV + + NIPF I DSKK++ +K +L KI + S Sbjct: 79 IGSDEVGTGDVFGSIVVCSSYVSAENIPFLENLNIKDSKKLTDEKIIQLVPKIINKITYS 138 Query: 83 ISSASHQYI------------------DKHNIHKATLDAIYHAVENLQVIPRSALIDGRS 124 + S + + + V + + Sbjct: 139 LISINPYKYNILTNKGFNLNKIKAILHNDMILKNLIKIKKNVNVILDKFTSSKNYFNYLK 198 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKV 155 + + + F K + + +S+AAASIIA+ Sbjct: 199 NEKKVYKKIFFCNKAEKVHISVAAASIIARY 229 >gi|148996807|ref|ZP_01824525.1| ribonuclease HIII [Streptococcus pneumoniae SP11-BS70] gi|168576877|ref|ZP_02722727.1| ribonuclease hiii [Streptococcus pneumoniae MLV-016] gi|307067052|ref|YP_003876018.1| ribonuclease HIII [Streptococcus pneumoniae AP200] gi|147757382|gb|EDK64421.1| ribonuclease HIII [Streptococcus pneumoniae SP11-BS70] gi|183577460|gb|EDT97988.1| ribonuclease hiii [Streptococcus pneumoniae MLV-016] gi|306408589|gb|ADM84016.1| Ribonuclease HIII [Streptococcus pneumoniae AP200] Length = 293 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEKKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916718|gb|AAZ93227.1| RNase HII [Streptococcus pneumoniae] gi|73916732|gb|AAZ93234.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEKKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|225853979|ref|YP_002735491.1| ribonuclease HIII [Streptococcus pneumoniae JJA] gi|254808017|sp|C1CCH0|RNH3_STRZJ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225722438|gb|ACO18291.1| ribonuclease hiii [Streptococcus pneumoniae JJA] Length = 293 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|194398393|ref|YP_002037085.1| ribonuclease HIII [Streptococcus pneumoniae G54] gi|226741382|sp|B5E7E5|RNH3_STRP4 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|194358060|gb|ACF56508.1| ribonuclease HIII [Streptococcus pneumoniae G54] gi|332204430|gb|EGJ18495.1| ribonuclease HIII [Streptococcus pneumoniae GA47901] Length = 293 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|149023691|ref|ZP_01836171.1| ribonuclease HIII [Streptococcus pneumoniae SP23-BS72] gi|147929628|gb|EDK80620.1| ribonuclease HIII [Streptococcus pneumoniae SP23-BS72] Length = 293 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916716|gb|AAZ93226.1| RNase HII [Streptococcus pneumoniae] gi|73916738|gb|AAZ93237.1| RNase HII [Streptococcus pneumoniae] gi|73916780|gb|AAZ93258.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916752|gb|AAZ93244.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916708|gb|AAZ93222.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916712|gb|AAZ93224.1| RNase HII [Streptococcus pneumoniae] gi|73916728|gb|AAZ93232.1| RNase HII [Streptococcus pneumoniae] gi|73916730|gb|AAZ93233.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916792|gb|AAZ93264.1| RNase HII [Streptococcus pneumoniae] gi|73916810|gb|AAZ93273.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|15902409|ref|NP_357959.1| ribonuclease HIII [Streptococcus pneumoniae R6] gi|116516121|ref|YP_815878.1| ribonuclease HIII [Streptococcus pneumoniae D39] gi|148988156|ref|ZP_01819619.1| ribonuclease HIII [Streptococcus pneumoniae SP6-BS73] gi|169834316|ref|YP_001693911.1| ribonuclease HIII [Streptococcus pneumoniae Hungary19A-6] gi|221231270|ref|YP_002510422.1| ribonuclease HIII [Streptococcus pneumoniae ATCC 700669] gi|30316193|sp|P59660|RNH3_STRR6 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|122279236|sp|Q04M70|RNH3_STRP2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|238688318|sp|B1I9J8|RNH3_STRPI RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|254808015|sp|B8ZLH1|RNH3_STRPJ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|2209339|gb|AAC45437.1| ribonuclease HII [Streptococcus pneumoniae] gi|15457925|gb|AAK99169.1| Ribonuclease HII [Streptococcus pneumoniae R6] gi|73916706|gb|AAZ93221.1| RNase HII [Streptococcus pneumoniae] gi|73916762|gb|AAZ93249.1| RNase HII [Streptococcus pneumoniae] gi|73916764|gb|AAZ93250.1| RNase HII [Streptococcus pneumoniae] gi|73916766|gb|AAZ93251.1| RNase HII [Streptococcus pneumoniae] gi|73916768|gb|AAZ93252.1| RNase HII [Streptococcus pneumoniae] gi|73916770|gb|AAZ93253.1| RNase HII [Streptococcus pneumoniae] gi|73916774|gb|AAZ93255.1| RNase HII [Streptococcus pneumoniae] gi|73916776|gb|AAZ93256.1| RNase HII [Streptococcus pneumoniae] gi|73916778|gb|AAZ93257.1| RNase HII [Streptococcus pneumoniae] gi|73916790|gb|AAZ93263.1| RNase HII [Streptococcus pneumoniae] gi|73916794|gb|AAZ93265.1| RNase HII [Streptococcus pneumoniae] gi|73916796|gb|AAZ93266.1| RNase HII [Streptococcus pneumoniae] gi|73916798|gb|AAZ93267.1| RNase HII [Streptococcus pneumoniae] gi|73916802|gb|AAZ93269.1| RNase HII [Streptococcus pneumoniae] gi|73916804|gb|AAZ93270.1| RNase HII [Streptococcus pneumoniae] gi|73916806|gb|AAZ93271.1| RNase HII [Streptococcus pneumoniae] gi|73916814|gb|AAZ93275.1| RNase HII [Streptococcus pneumoniae] gi|116076697|gb|ABJ54417.1| ribonuclease HIII [Streptococcus pneumoniae D39] gi|147926620|gb|EDK77693.1| ribonuclease HIII [Streptococcus pneumoniae SP6-BS73] gi|168996818|gb|ACA37430.1| ribonuclease hiii [Streptococcus pneumoniae Hungary19A-6] gi|220673730|emb|CAR68229.1| ribonuclease HIII [Streptococcus pneumoniae ATCC 700669] Length = 290 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|262281891|ref|ZP_06059660.1| ribonuclease HIII [Streptococcus sp. 2_1_36FAA] gi|262262345|gb|EEY81042.1| ribonuclease HIII [Streptococcus sp. 2_1_36FAA] Length = 296 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 23/193 (11%) Query: 23 MWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSS 78 + G DEVG G+ G + VVA+ + G+ DSK ++ +K +L + Sbjct: 80 YQAMIGTDEVGNGSYFGGLAVVASFVTKEQEDFLRKLGVGDSKTLTDQKIRQLAPILKEK 139 Query: 79 AIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + ++ Q++ + Sbjct: 140 ITHQALLLSPKKYNQVIASGYNAVSVKVALHNQAIYLLLEKGIKPDQIVIDAFTSSTNYQ 199 Query: 126 PEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + + A ++ + + RD + + G+ G Sbjct: 200 RYVKQERNQVSQAIHLEEKAEGKYLAVAVSSIIARDLFLENLEILSQELGYQLPSGAGAK 259 Query: 183 -KHQQV--IKEKG 192 H +K G Sbjct: 260 SDHVASQILKAYG 272 >gi|323353469|ref|ZP_08088002.1| ribonuclease HIII [Streptococcus sanguinis VMC66] gi|322121415|gb|EFX93178.1| ribonuclease HIII [Streptococcus sanguinis VMC66] gi|324990323|gb|EGC22261.1| ribonuclease HIII [Streptococcus sanguinis SK353] gi|325688397|gb|EGD30415.1| ribonuclease HIII [Streptococcus sanguinis SK72] Length = 296 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 24/197 (12%) Query: 19 REKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK 74 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L Sbjct: 77 ASQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPV 135 Query: 75 ITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALID 121 + S + ++ ++A + + +++ + Sbjct: 136 LKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQ 195 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + I + A ++ + + RD + + G+ G Sbjct: 196 QNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYTLPSG 255 Query: 179 YPTA-KHQQV--IKEKG 192 + H ++ G Sbjct: 256 AGSKSDHVASQILQAHG 272 >gi|73662964|ref|YP_301745.1| ribonuclease HIII [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642317|sp|Q49WQ7|RNH3_STAS1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|72495479|dbj|BAE18800.1| putative ribonuclease HIII [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 310 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 G DE G G GP+ V A + N+ G++DSKK++ K EL E++ + S Sbjct: 93 IGSDEAGSGDYFGPLTVCAAYVSHKNVQILKALGVDDSKKLTDTKIVELAEQLVTFIPHS 152 Query: 83 ISSASHQYIDK 93 + +++ ++ Sbjct: 153 LLVMNNEKYNE 163 >gi|223043745|ref|ZP_03613788.1| ribonuclease hiii [Staphylococcus capitis SK14] gi|222442842|gb|EEE48944.1| ribonuclease hiii [Staphylococcus capitis SK14] Length = 310 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 5/122 (4%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 G DE G G GP+ V A + N G++DSKK++ K EL E++ + S Sbjct: 94 IGSDEAGSGDYFGPLTVCAAYVSEKNAQVLKTLGVDDSKKLTDDKIVELAEQLITFIPHS 153 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSI 142 + + ++ ++ AV + + I + + FA + Sbjct: 154 LLTLNNVKYNE-RQKMGWSQVKMKAVLHNEAIKNVVQKIDVDHLDYIVIDQFAKREVYQH 212 Query: 143 SL 144 Sbjct: 213 YA 214 >gi|163791555|ref|ZP_02185959.1| ribonuclease HIII [Carnobacterium sp. AT7] gi|159873191|gb|EDP67291.1| ribonuclease HIII [Carnobacterium sp. AT7] Length = 312 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 65/182 (35%), Gaps = 27/182 (14%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSA 79 W V G DEVG G+ GP+ V A +D + G+ DSK++ + + + + + Sbjct: 95 WSVIGSDEVGTGSYFGPLTVVAAYVDQSQLALLKELGVRDSKEMKDSEIIRVAKDLITFL 154 Query: 80 IISISSASHQYI--------DKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 S+ + + A+ H +E ++ ++ + Sbjct: 155 PHSLLNVMPEKYNAIQPTMTQGKMKAILHNQALGHVLEKIKPKKPDGILIDQFELPATYF 214 Query: 132 QA------------FAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + + KG+ L++AAASIIA R ++ + G G Sbjct: 215 KHISDQPKQIKETIYFQTKGEGHHLAVAAASIIA---RYAFLKGLDELTAQAGMKIPSGA 271 Query: 180 PT 181 + Sbjct: 272 GS 273 >gi|89898516|ref|YP_515626.1| ribonuclease HIII [Chlamydophila felis Fe/C-56] gi|123483040|sp|Q253Q7|RNH3_CHLFF RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|89331888|dbj|BAE81481.1| ribonuclease HII [Chlamydophila felis Fe/C-56] Length = 300 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILD-----PNNIPFGINDSKKISHKKREELYEK 74 E ++ P G+DE G+G GP+ +A + + I DSK ++ + L + Sbjct: 82 EADLRPRLGVDESGKGDFFGPLCIAGVYARDEETLKSLYKTKIQDSKLLNDAQILSLAKT 141 Query: 75 ITSSAIISISSASHQYIDKHN 95 I SS + + ++ Sbjct: 142 IRSSCTYDVMILYPEKYNELY 162 >gi|168494560|ref|ZP_02718703.1| ribonuclease hiii [Streptococcus pneumoniae CDC3059-06] gi|307126617|ref|YP_003878648.1| ribonuclease hiii [Streptococcus pneumoniae 670-6B] gi|183575525|gb|EDT96053.1| ribonuclease hiii [Streptococcus pneumoniae CDC3059-06] gi|306483679|gb|ADM90548.1| ribonuclease hiii [Streptococcus pneumoniae 670-6B] Length = 293 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 20/178 (11%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVAA + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 DLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + A ++ + +TRD + + G+ G TA Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVITRDLFLENLENLGRELGYQLPSGAGTA 256 >gi|327468592|gb|EGF14071.1| ribonuclease HIII [Streptococcus sanguinis SK330] Length = 296 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 24/197 (12%) Query: 19 REKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK 74 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L Sbjct: 77 ASQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPV 135 Query: 75 ITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALID 121 + S + ++ ++A + + +++ + Sbjct: 136 LKEKIAHQALLLSPEKYNEVIASVYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQ 195 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + I + A ++ + + RD + + G+ G Sbjct: 196 QNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYTLPSG 255 Query: 179 YPTA-KHQQV--IKEKG 192 + H ++ G Sbjct: 256 AGSKSDHVASQILQAYG 272 >gi|324992151|gb|EGC24073.1| ribonuclease HIII [Streptococcus sanguinis SK405] gi|327459468|gb|EGF05814.1| ribonuclease HIII [Streptococcus sanguinis SK1] Length = 296 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 24/197 (12%) Query: 19 REKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK 74 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L Sbjct: 77 ASQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPV 135 Query: 75 ITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALID 121 + S + ++ ++A + + +++ + Sbjct: 136 LKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQ 195 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + I + A ++ + + RD + + G+ G Sbjct: 196 QNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYTLPSG 255 Query: 179 YPTA-KHQQV--IKEKG 192 + H ++ G Sbjct: 256 AGSKSDHVASQILQAYG 272 >gi|309799726|ref|ZP_07693942.1| ribonuclease hiii [Streptococcus infantis SK1302] gi|308116642|gb|EFO54102.1| ribonuclease hiii [Streptococcus infantis SK1302] Length = 293 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE----LYEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K + L E+I Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQLAPLLKERIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I + ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKRVQPEKIVIDAFTSTQNYEKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA RD + + G+ G T Sbjct: 199 LKNEANHFSNPVSLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKG 192 A + ++ G Sbjct: 256 ASDKVASQILRAYG 269 >gi|125717223|ref|YP_001034356.1| ribonuclease HIII [Streptococcus sanguinis SK36] gi|125497140|gb|ABN43806.1| Ribonuclease HIII, putative [Streptococcus sanguinis SK36] Length = 322 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 61/197 (30%), Gaps = 24/197 (12%) Query: 19 REKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK 74 +N + G DEVG G+ G + VVA+ + + G+ DSK + K +L Sbjct: 103 ASQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTFNDNKIRQLAPV 161 Query: 75 ITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALID 121 + S + ++ ++A + + +++ + Sbjct: 162 LKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIFLLLQKGINPEKIVIDAFTSQ 221 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + I + A ++ + + RD + + G+ G Sbjct: 222 QNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYALPSG 281 Query: 179 YPTA-KHQQV--IKEKG 192 + H ++ G Sbjct: 282 AGSKSDHVASQILQAYG 298 >gi|328462259|gb|EGF34366.1| ribonuclease HII [Lactobacillus rhamnosus MTCC 5462] Length = 25 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 12/25 (48%) Query: 168 YPDYGFDSHVGYPTAKHQQVIKEKG 192 YP Y F ++GY T H + G Sbjct: 1 YPGYDFKDNMGYGTKAHLAGLAAHG 25 >gi|251810588|ref|ZP_04825061.1| ribonuclease HIII [Staphylococcus epidermidis BCM-HMP0060] gi|282876412|ref|ZP_06285279.1| ribonuclease HIII [Staphylococcus epidermidis SK135] gi|251805748|gb|EES58405.1| ribonuclease HIII [Staphylococcus epidermidis BCM-HMP0060] gi|281295437|gb|EFA87964.1| ribonuclease HIII [Staphylococcus epidermidis SK135] Length = 308 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR----EELYEKITSS 78 G DE G G GP+ V A + ++I G++DSKK+S K E+L I S Sbjct: 91 IGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLSDTKIVDLAEQLITFIPHS 150 >gi|299535515|ref|ZP_07048836.1| ribonuclease HIII [Lysinibacillus fusiformis ZC1] gi|298728715|gb|EFI69269.1| ribonuclease HIII [Lysinibacillus fusiformis ZC1] Length = 307 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAII 81 V G DE G G GP+ VAA+ + + G+ DSK ++ ++ + ++ + Sbjct: 94 VLGSDETGTGDYFGPITVAAVYVPTSKIELMNELGVKDSKMLTDDYMRKIAPDLRAACVH 153 Query: 82 SISSASHQYIDK 93 S+ ++ + Sbjct: 154 SVLVLRNEKYNN 165 >gi|306825816|ref|ZP_07459155.1| ribonuclease HIII [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432177|gb|EFM35154.1| ribonuclease HIII [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 293 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 77/199 (38%), Gaps = 29/199 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PMIGTDEVGNGSYFGALAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I + ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 P + K + L++A +SIIA RD + + G+ G T Sbjct: 199 LAQEANHFPNKITLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKGPSCIH 197 A + ++ G +H Sbjct: 256 ASDKVASKILQAYGMKGLH 274 >gi|170290760|ref|YP_001737576.1| ribonuclease HII/HIII [Candidatus Korarchaeum cryptofilum OPF8] gi|170174840|gb|ACB07893.1| ribonuclease HII/HIII [Candidatus Korarchaeum cryptofilum OPF8] Length = 167 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 53/147 (36%), Gaps = 18/147 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAI-I 81 G DE G+G GP+VVAA+ LD F G+ +SK + K+ EEL I +I Sbjct: 8 IGSDEAGKGEREGPIVVAAVALDGEGRKFLRARGLLESKSVPKKRIEELAGLIREVSISS 67 Query: 82 SISSASHQYIDK-------------HNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + S + + + + + V + + Sbjct: 68 HVKRVSPEELRELWNRGNLNDLLSIWHFEVVKEVLKDTEACRIIVDSFDRRRLEEAFSQI 127 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKV 155 + D S+AAASI+AK Sbjct: 128 KGIEVIIESGADLKYPSVAAASILAKF 154 >gi|322386130|ref|ZP_08059764.1| ribonuclease HIII [Streptococcus cristatus ATCC 51100] gi|321269822|gb|EFX52748.1| ribonuclease HIII [Streptococcus cristatus ATCC 51100] Length = 294 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 58/188 (30%), Gaps = 20/188 (10%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E + + G DEVG G+ G + VVA+ + + G+ DSK ++ K + Sbjct: 70 EEASKTSQKISLIGTDEVGNGSYFGGLAVVASFVSPEQHAFLRKLGVGDSKALTDLKIRQ 129 Query: 71 LYEKITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRS 117 L + S + ++ ++A + + +++ + Sbjct: 130 LAPILKKEIQHQALLLSPEKYNEVVASGYNAVSVKVALHNQAIYLLLQKRLRPEKIVIDA 189 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFD 174 + I + A ++ + + RD + + G+ Sbjct: 190 FTSQQNYDKYLQNEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYT 249 Query: 175 SHVGYPTA 182 G + Sbjct: 250 LPSGAGSK 257 >gi|322374879|ref|ZP_08049393.1| ribonuclease HIII [Streptococcus sp. C300] gi|321280379|gb|EFX57418.1| ribonuclease HIII [Streptococcus sp. C300] Length = 293 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 24/210 (11%) Query: 12 FELEAMVREKNMW-PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHK 66 F E P+ G DEVG G+ G + VVA+ + G+ DSK ++ + Sbjct: 65 FGYEVQQENSGQDFPMIGTDEVGNGSYFGGLAVVASFVTPDQYDFLRKLGVGDSKTLTDQ 124 Query: 67 KREEL----YEKITSSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQV 113 K ++ EKI A++ S ++ I + ++A + V+ ++ Sbjct: 125 KIRQIAPILKEKIPHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKI 184 Query: 114 IPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPD 170 + + K + A ++ + + RD + + Sbjct: 185 VIDAFTSPKNYDKYLAQEANRFPNKISLEEKAEGKYLAVAVSSIIARDLFLENLENLGRE 244 Query: 171 YGFDSHVGYPTAKHQQV---IKEKGPSCIH 197 G+ G TA + ++ G +H Sbjct: 245 LGYQLPSGAGTASDKVASKILQAYGMKGLH 274 >gi|282890959|ref|ZP_06299473.1| hypothetical protein pah_c032o041 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499174|gb|EFB41479.1| hypothetical protein pah_c032o041 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 323 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 14/97 (14%) Query: 5 SIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAI------ILDPNNIPFGIN 58 + PE+ H E ++ GIDE G+G GP+ +A + IL G+ Sbjct: 103 TYPEQTHTTQENLLGR------IGIDESGKGDFFGPLCIAGVFAEGQDIL--RLKALGVR 154 Query: 59 DSKKISHKKREELYEKITSSAIISISSASHQYIDKHN 95 DSK I+ K ++ KI S I + ++ Sbjct: 155 DSKTITDKDILKISAKIRESFTYHIVRINPLKYNELY 191 >gi|319939978|ref|ZP_08014333.1| ribonuclease HIII [Streptococcus anginosus 1_2_62CV] gi|319810989|gb|EFW07308.1| ribonuclease HIII [Streptococcus anginosus 1_2_62CV] Length = 296 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/202 (12%), Positives = 64/202 (31%), Gaps = 23/202 (11%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E + P+ G DEVG G+ G + VVA+ + + + DSK ++ +K + Sbjct: 72 EKTKSHRQNCPLIGTDEVGNGSYFGGLAVVASFVTPEQHDFLRKLRVGDSKTLTDQKIRQ 131 Query: 71 LYEKITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRS 117 + + S + ++ ++A + V+ +++ + Sbjct: 132 IVPLLKEKIQHQALLLSPKKYNQVIAADYNAVSVKVALHNQAIYLLLQTGVQPEKIVIDA 191 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFD 174 D + + A ++ + + RD + + G++ Sbjct: 192 FTSDKNYQKYVKQERNHFSNPLTLEEKAEGKYLAVAVSSMIARDLFLENLENLSQELGYE 251 Query: 175 SHVGYPTAKHQQV---IKEKGP 193 G + ++ G Sbjct: 252 LPSGAGEKSDKIASQLLQAYGI 273 >gi|322390269|ref|ZP_08063798.1| ribonuclease HIII [Streptococcus parasanguinis ATCC 903] gi|321143000|gb|EFX38449.1| ribonuclease HIII [Streptococcus parasanguinis ATCC 903] Length = 299 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 58/176 (32%), Gaps = 20/176 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + V A + P+ G+ DSK + +K ++L + + Sbjct: 87 IGTDEVGNGSYFGGLTVVASFVTPDQHDWLKKLGVGDSKTLDDRKIQQLAPLLEENIQHQ 146 Query: 83 ISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 S + ++ ++A + ++ +++ + Sbjct: 147 ALLLSPKKYNEVIASGYNAVSVKVALHNQAIYLLLNKGIQAERIVIDAFTTAKNYQKYVK 206 Query: 130 PCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + D + A ++ + + R+ ++ + GF+ G Sbjct: 207 AEKNQVTQAIDLEEKAEGKYLAVAVSSIIARNLFLQNLEDLGKELGFNLPSGAGAK 262 >gi|91201202|emb|CAJ74262.1| unknown protein [Candidatus Kuenenia stuttgartiensis] Length = 319 Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 19/27 (70%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILD 49 M +AGIDE G G + GP+V++ + LD Sbjct: 1 MTIIAGIDEAGYGPVLGPLVISVVALD 27 >gi|206901146|ref|YP_002250429.1| ribonuclease HII, putative [Dictyoglomus thermophilum H-6-12] gi|206740249|gb|ACI19307.1| ribonuclease HII, putative [Dictyoglomus thermophilum H-6-12] Length = 425 Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 80/215 (37%), Gaps = 35/215 (16%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSK----KISH----KKRE--ELYE 73 V G DEVG+G + GP++ +++ + I ++ K K SH R + Sbjct: 82 DYVLGFDEVGKGEVFGPIITCGVLIKRDYISQIPSELKTPDTKKSHDFEYWTRILSIINR 141 Query: 74 KITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQ-----------VIPRSALIDG 122 I+ +I + ID+ NI++ + ++ L VI + +G Sbjct: 142 YISDVFFYAIDLIQPREIDRFNINQLLDLSYTKLIKRLMEGLPSGVEARVVIDDYGVGEG 201 Query: 123 RSIP-----EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSH- 176 ++ + I + L + AS+IAK R+R+++ + Y + Sbjct: 202 LKKFLEKERKESNFEYIFAIDSEDKFLEVKLASLIAKAHRERILKFLQEI---YEIPGNL 258 Query: 177 -VGYPTAKHQQV-IKEKGPSC--IHRLTFRP-LRN 206 G + K ++ + R +F ++ Sbjct: 259 IKGNMSNKELELFLVNYSYIDSWFIRKSFGNKVKK 293 >gi|296875781|ref|ZP_06899843.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912] gi|296433152|gb|EFH18937.1| ribonuclease H [Streptococcus parasanguinis ATCC 15912] Length = 299 Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 58/176 (32%), Gaps = 20/176 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + V A + P+ G+ DSK + +K ++L + + Sbjct: 87 IGTDEVGNGSYFGGLTVVASFVTPDQHDWLKKLGVGDSKTLDDRKIQQLAPLLEENIQHQ 146 Query: 83 ISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 S + ++ ++A + V+ +++ + Sbjct: 147 ALLLSPKKYNEVIASGYNAVSVKVALHNQAIYLLLNKRVQAERIVIDAFTTAKNYQKYVK 206 Query: 130 PCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + + + A ++ + + R+ ++ + GF+ G Sbjct: 207 AEKNQVSQAIELEEKAEGKYLAVAVSSIIARNLFLQNLEDLGKELGFNLPSGAGAK 262 >gi|284931417|gb|ADC31355.1| Ribonuclease HIII [Mycoplasma gallisepticum str. F] Length = 331 Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 15/127 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G GP+V ++ + I G+ DSK ++ K + ++ Sbjct: 111 IGCDEVGVGEYLGPIVTCCALVSDDQIDQINRLGVKDSKLLTDDKIVNIANELRKFIKFQ 170 Query: 83 ISSASHQ-----------YIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC 131 I + + N KA + + + + ++ + + E Sbjct: 171 IFCFDPKKGALEFNQMYDQLKNINALKAYMHNAGLILFKQKYGINNMIVLDQFVNEKKYY 230 Query: 132 QAFAVIK 138 + K Sbjct: 231 EHLNNYK 237 >gi|164655638|ref|XP_001728948.1| hypothetical protein MGL_3942 [Malassezia globosa CBS 7966] gi|159102836|gb|EDP41734.1| hypothetical protein MGL_3942 [Malassezia globosa CBS 7966] Length = 86 Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 28 GIDEVGRGALAGPVVVAAIILDPNNIP 54 G+DE GRG + GP+V + Sbjct: 43 GVDEAGRGPVLGPLVYGIAYCPMDMQE 69 >gi|146103342|ref|XP_001469539.1| ribonuclease H [Leishmania infantum] gi|134073909|emb|CAM72648.1| putative ribonuclease H [Leishmania infantum JPCM5] Length = 316 Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 27/169 (15%) Query: 25 PVAGIDEVGRGALAGPVVV-AAII-LDPNNIPFGIN---DSKKISHKKR----------- 68 V GI E GRG++ GP+ A+I L ++ + DSK + ++R Sbjct: 45 LVLGIGEAGRGSVIGPIFYTGAVISLGEHDDLVRLCHVADSKTLDERRRLASLQQLRLLK 104 Query: 69 -----------EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 EE+ + IT + ++++ SH+ + A + Sbjct: 105 TFRSFTVCVSPEEISKTITGRSGRNLNTLSHETAIQIISKATLASAGKLCAAYVGTAGPP 164 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A R + K DS ++AASI+AK TRD + + Sbjct: 165 ATYQERLAGRFPHLRVTVAKKADSQFPIVSAASIVAKTTRDTAIEALGE 213 >gi|315612578|ref|ZP_07887491.1| ribonuclease HIII [Streptococcus sanguinis ATCC 49296] gi|315315559|gb|EFU63598.1| ribonuclease HIII [Streptococcus sanguinis ATCC 49296] Length = 291 Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 29/199 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I + ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 +P + K + L++A +SIIA RD + + G+ G T Sbjct: 199 LAMEANHVPNKITLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKGPSCIH 197 A + ++ G +H Sbjct: 256 ASDKVASKILQAYGMKGLH 274 >gi|312868515|ref|ZP_07728715.1| ribonuclease HIII [Streptococcus parasanguinis F0405] gi|311096260|gb|EFQ54504.1| ribonuclease HIII [Streptococcus parasanguinis F0405] Length = 299 Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 58/176 (32%), Gaps = 20/176 (11%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + V A + P+ G+ DSK + +K ++L + + Sbjct: 87 IGTDEVGNGSYFGGLTVVASFVTPDQHDWLKKLGVGDSKTLDDRKIQQLAPLLEENIQHQ 146 Query: 83 ISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 S + ++ ++A + V+ +++ + Sbjct: 147 ALLLSPKKYNEVIASGYNAVSVKVALHNQAIYLLLNKGVQAERIVIDAFTTAKNYQKYVK 206 Query: 130 PCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + + + A ++ + + R+ ++ + GF+ G Sbjct: 207 AEKNQVSQAIELEEKAEGKYLAVAVSSIIARNLFLQNLEDLGKELGFNLPSGAGAK 262 >gi|307704254|ref|ZP_07641173.1| ribonuclease HIII [Streptococcus mitis SK597] gi|307622165|gb|EFO01183.1| ribonuclease HIII [Streptococcus mitis SK597] Length = 293 Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 62/181 (34%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ + Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 81 ISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 S ++ ++A + ++ +++ + Sbjct: 139 HQTLLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGIQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANHFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|320547504|ref|ZP_08041790.1| ribonuclease HIII [Streptococcus equinus ATCC 9812] gi|320447849|gb|EFW88606.1| ribonuclease HIII [Streptococcus equinus ATCC 9812] Length = 299 Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 66/192 (34%), Gaps = 28/192 (14%) Query: 15 EAMVREKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 E + P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K + Sbjct: 74 EKSSQAGQNMPLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQ 133 Query: 71 LYEKITSSAIISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIP 115 + + + S + ++ ++A + V+ +++ Sbjct: 134 IAPILEKNIKHKALLLSPKKYNQVVGKGKMHNAVSVKVALHNQAIFLLLQDGVKPEKIVI 193 Query: 116 RSALIDGRSIPE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 + K + L++A +SIIA R+ + K Sbjct: 194 DAFTSRQNYEKYLKNEVNHFNNPLTLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQ 250 Query: 170 DYGFDSHVGYPT 181 + + G + Sbjct: 251 EVQYKLPSGAGS 262 >gi|315658551|ref|ZP_07911423.1| ribonuclease HIII [Staphylococcus lugdunensis M23590] gi|315496880|gb|EFU85203.1| ribonuclease HIII [Staphylococcus lugdunensis M23590] Length = 310 Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 57/194 (29%), Gaps = 24/194 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKR----EELYEKITSS 78 G DE G G GP+ V A + ++ G++DSKK++ K E+L I S Sbjct: 94 IGSDEAGSGDYFGPLTVCAAYVTQSHVAILKTLGVDDSKKLTDTKIIDLAEQLVTFIPHS 153 Query: 79 ----AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 I + + + + V I + Q + Sbjct: 154 LLTLDNIKYNERQALGWSQVKMKAVLHNEAIKNVTQKIHPDNIDYIVIDQFAQREVYQHY 213 Query: 135 AVIKGDSISLSI---------AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 A+ + A + + ++R ++ + + G Sbjct: 214 ALSALPFPEKTKFETKGESKSLAIAAASIISRYAFVKYMDQLARKMHCEIPKGAGNKVDL 273 Query: 186 QV---IKEKGPSCI 196 I + G + + Sbjct: 274 VAAKIIDKSGINKL 287 >gi|289551055|ref|YP_003471959.1| Ribonuclease HIII [Staphylococcus lugdunensis HKU09-01] gi|289180587|gb|ADC87832.1| Ribonuclease HIII [Staphylococcus lugdunensis HKU09-01] Length = 310 Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 57/194 (29%), Gaps = 24/194 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKR----EELYEKITSS 78 G DE G G GP+ V A + ++ G++DSKK++ K E+L I S Sbjct: 94 IGSDEAGSGDYFGPLTVCAAYVTQSHVAILKTLGVDDSKKLTDTKIIDLAEQLVTFIPHS 153 Query: 79 ----AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 I + + + + V I + Q + Sbjct: 154 LLTLDNIKYNERQALGWSQVKMKAVLHNEAIKNVTQKIHPDNIDYIVIDQFAQREVYQHY 213 Query: 135 AVIKGDSISLSI---------AAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQ 185 A+ + A + + ++R ++ + + G Sbjct: 214 ALSALPFPEKTKFETKGESKSLAIAAASIISRYAFVKYMDQLARKMHCEIPKGAGNKVDL 273 Query: 186 QV---IKEKGPSCI 196 I + G + + Sbjct: 274 VAAKIIDKSGINKL 287 >gi|319401546|gb|EFV89756.1| ribonuclease HIII [Staphylococcus epidermidis FRI909] Length = 308 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR----EELYEKITSS 78 G DE G G GP+ V A + ++I G++DSKK++ K E+L I S Sbjct: 91 IGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLITFIPHS 150 >gi|293366878|ref|ZP_06613554.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W2(grey)] gi|291319179|gb|EFE59549.1| ribonuclease HIII [Staphylococcus epidermidis M23864:W2(grey)] gi|329729960|gb|EGG66351.1| ribonuclease HIII [Staphylococcus epidermidis VCU144] gi|329734428|gb|EGG70741.1| ribonuclease HIII [Staphylococcus epidermidis VCU045] gi|329736208|gb|EGG72480.1| ribonuclease HIII [Staphylococcus epidermidis VCU028] Length = 308 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR----EELYEKITSS 78 G DE G G GP+ V A + ++I G++DSKK++ K E+L I S Sbjct: 91 IGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLITFIPHS 150 >gi|57866643|ref|YP_188306.1| ribonuclease HIII [Staphylococcus epidermidis RP62A] gi|242242439|ref|ZP_04796884.1| ribonuclease HIII [Staphylococcus epidermidis W23144] gi|73917855|sp|Q5HQ34|RNH3_STAEQ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|57637301|gb|AAW54089.1| ribonuclease HIII [Staphylococcus epidermidis RP62A] gi|242234146|gb|EES36458.1| ribonuclease HIII [Staphylococcus epidermidis W23144] Length = 308 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR----EELYEKITSS 78 G DE G G GP+ V A + ++I G++DSKK++ K E+L I S Sbjct: 91 IGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLITFIPHS 150 >gi|27467751|ref|NP_764388.1| ribonuclease HIII [Staphylococcus epidermidis ATCC 12228] gi|73917854|sp|Q8CPL8|RNH3_STAES RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|27315295|gb|AAO04430.1|AE016746_220 putative ribonuclease HIII [Staphylococcus epidermidis ATCC 12228] Length = 308 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR----EELYEKITSS 78 G DE G G GP+ V A + ++I G++DSKK++ K E+L I S Sbjct: 91 IGSDEAGSGDYFGPLTVCAAYVSQSHIKILKELGVDDSKKLNDTKIVDLAEQLITFIPHS 150 >gi|301793646|emb|CBW36031.1| ribonuclease HIII [Streptococcus pneumoniae INV104] Length = 293 Score = 45.0 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAG--PVVVAAIILDPNNI--PFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G VV A + D ++ G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|297748139|gb|ADI50685.1| Ribonuclease HIII [Chlamydia trachomatis D-EC] gi|297749019|gb|ADI51697.1| Ribonuclease HIII [Chlamydia trachomatis D-LC] Length = 302 Score = 45.0 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 60/213 (28%), Gaps = 34/213 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEK 74 ++++ G+DE G+G GP+ A + I DSK I K L + Sbjct: 84 QQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQN 143 Query: 75 ITSSAIISISSASHQYIDKHNIH-----------KATLDAIYHAVENLQVIPRSALIDGR 123 I S + + + + + AT+ V S Sbjct: 144 IRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASS 203 Query: 124 SIPEDLPCQAFA------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + + +AAASI+A R+ + H Y Sbjct: 204 ERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILA---REAFLSSIHALESQYQIRLLK 260 Query: 178 GYPTAKHQQV---IKEKG------PSCIHRLTF 201 G Q+ + KG H TF Sbjct: 261 GASGKVKQRAKEILHNKGQVVLEKVCKTHFKTF 293 >gi|148993944|ref|ZP_01823314.1| ribonuclease HIII [Streptococcus pneumoniae SP9-BS68] gi|168488094|ref|ZP_02712293.1| ribonuclease hiii [Streptococcus pneumoniae SP195] gi|147927533|gb|EDK78560.1| ribonuclease HIII [Streptococcus pneumoniae SP9-BS68] gi|183572945|gb|EDT93473.1| ribonuclease hiii [Streptococcus pneumoniae SP195] gi|332075249|gb|EGI85719.1| ribonuclease HIII [Streptococcus pneumoniae GA17570] Length = 293 Score = 45.0 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAG--PVVVAAIILDPNNI--PFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G VV A + D ++ G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916816|gb|AAZ93276.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 45.0 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAG--PVVVAAIILDPNNI--PFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G VV A + D ++ G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVTLHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916756|gb|AAZ93246.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 45.0 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAG--PVVVAAIILDPNNI--PFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G VV A + D ++ G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|15604726|ref|NP_219510.1| ribonuclease HIII [Chlamydia trachomatis D/UW-3/CX] gi|76788720|ref|YP_327806.1| ribonuclease HIII [Chlamydia trachomatis A/HAR-13] gi|237802442|ref|YP_002887636.1| ribonuclease HIII [Chlamydia trachomatis B/Jali20/OT] gi|237804357|ref|YP_002888511.1| ribonuclease HIII [Chlamydia trachomatis B/TZ1A828/OT] gi|255310808|ref|ZP_05353378.1| ribonuclease HIII [Chlamydia trachomatis 6276] gi|255317108|ref|ZP_05358354.1| ribonuclease HIII [Chlamydia trachomatis 6276s] gi|7227923|sp|O84011|RNH3_CHLTR RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|123607238|sp|Q3KN14|RNH3_CHLTA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|3328396|gb|AAC67598.1| Ribonuclease HII [Chlamydia trachomatis D/UW-3/CX] gi|76167250|gb|AAX50258.1| ribonuclease HIII [Chlamydia trachomatis A/HAR-13] gi|231272657|emb|CAX09560.1| ribonuclease HIII [Chlamydia trachomatis B/TZ1A828/OT] gi|231273676|emb|CAX10454.1| ribonuclease HIII [Chlamydia trachomatis B/Jali20/OT] gi|289525054|emb|CBJ14523.1| ribonuclease HIII [Chlamydia trachomatis Sweden2] gi|296434592|gb|ADH16770.1| ribonuclease HIII [Chlamydia trachomatis E/150] gi|296435523|gb|ADH17697.1| ribonuclease HIII [Chlamydia trachomatis G/9768] gi|296436447|gb|ADH18617.1| ribonuclease HIII [Chlamydia trachomatis G/11222] gi|296437383|gb|ADH19544.1| ribonuclease HIII [Chlamydia trachomatis G/11074] gi|297139882|gb|ADH96640.1| ribonuclease HIII [Chlamydia trachomatis G/9301] Length = 300 Score = 45.0 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 60/213 (28%), Gaps = 34/213 (15%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEK 74 ++++ G+DE G+G GP+ A + I DSK I K L + Sbjct: 82 QQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQN 141 Query: 75 ITSSAIISISSASHQYIDKHNIH-----------KATLDAIYHAVENLQVIPRSALIDGR 123 I S + + + + + AT+ V S Sbjct: 142 IRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASS 201 Query: 124 SIPEDLPCQAFA------VIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + + +AAASI+A R+ + H Y Sbjct: 202 ERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILA---REAFLSSIHALESQYQIRLLK 258 Query: 178 GYPTAKHQQV---IKEKG------PSCIHRLTF 201 G Q+ + KG H TF Sbjct: 259 GASGKVKQRAKEILHNKGQVVLEKVCKTHFKTF 291 >gi|253751116|ref|YP_003024257.1| ribonuclease HIII [Streptococcus suis SC84] gi|253753017|ref|YP_003026157.1| ribonuclease HIII [Streptococcus suis P1/7] gi|253754840|ref|YP_003027980.1| ribonuclease HIII [Streptococcus suis BM407] gi|251815405|emb|CAZ50980.1| ribonuclease HIII [Streptococcus suis SC84] gi|251817304|emb|CAZ55036.1| ribonuclease HIII [Streptococcus suis BM407] gi|251819262|emb|CAR44544.1| ribonuclease HIII [Streptococcus suis P1/7] gi|292557671|gb|ADE30672.1| Ribonuclease HIII [Streptococcus suis GZ1] gi|319757381|gb|ADV69323.1| ribonuclease HIII [Streptococcus suis JS14] Length = 296 Score = 45.0 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA + ++ G++DSKK++ +K ++ EKI Sbjct: 83 PMIGTDEVGNGSYFGGLAVVAGFVRPEDHSFLKSLGVDDSKKMTDQKICQIAPLLKEKIP 142 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I++ ++A + V+ +++ + Sbjct: 143 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 202 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA R + + G G + Sbjct: 203 LKKEANQFANPVTLEEKAEGRYLAVAVSSIIA---RSMFLENLVQLGQLVGMHLPSGAGS 259 Query: 182 AKHQQV---IKEKG 192 Q +K+ G Sbjct: 260 KSDQVAASILKQYG 273 >gi|146317882|ref|YP_001197594.1| ribonuclease HIII [Streptococcus suis 05ZYH33] gi|146320071|ref|YP_001199782.1| ribonuclease HIII [Streptococcus suis 98HAH33] gi|145688688|gb|ABP89194.1| Ribonuclease HIII [Streptococcus suis 05ZYH33] gi|145690877|gb|ABP91382.1| Ribonuclease HIII [Streptococcus suis 98HAH33] Length = 302 Score = 45.0 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA + ++ G++DSKK++ +K ++ EKI Sbjct: 89 PMIGTDEVGNGSYFGGLAVVAGFVRPEDHSFLKSLGVDDSKKMTDQKICQIAPLLKEKIP 148 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I++ ++A + V+ +++ + Sbjct: 149 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 208 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA R + + G G + Sbjct: 209 LKKEANQFANPVTLEEKAEGRYLAVAVSSIIA---RSMFLENLVQLGQLVGMHLPSGAGS 265 Query: 182 AKHQQV---IKEKG 192 Q +K+ G Sbjct: 266 KSDQVAASILKQYG 279 >gi|168490684|ref|ZP_02714827.1| ribonuclease hiii [Streptococcus pneumoniae CDC0288-04] gi|73916720|gb|AAZ93228.1| RNase HII [Streptococcus pneumoniae] gi|183574806|gb|EDT95334.1| ribonuclease hiii [Streptococcus pneumoniae CDC0288-04] gi|332202313|gb|EGJ16382.1| ribonuclease HIII [Streptococcus pneumoniae GA41317] Length = 290 Score = 45.0 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAG--PVVVAAIILDPNNI--PFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G VV A + D ++ G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVAAFVTSDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|225858257|ref|YP_002739767.1| ribonuclease HIII [Streptococcus pneumoniae 70585] gi|254808014|sp|C1C5E1|RNH3_STRP7 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|225720842|gb|ACO16696.1| ribonuclease hiii [Streptococcus pneumoniae 70585] Length = 293 Score = 45.0 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK----IT 76 P+ G DEVG G+ G + V A + P+ G+ DSK ++ +K ++ I Sbjct: 79 PLIGTDEVGNGSYFGGLAVVATFVTPDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|307706054|ref|ZP_07642873.1| ribonuclease HIII [Streptococcus mitis SK321] gi|307618454|gb|EFN97602.1| ribonuclease HIII [Streptococcus mitis SK321] Length = 293 Score = 45.0 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + ++ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGIQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|322503423|emb|CBZ38508.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 316 Score = 45.0 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 27/169 (15%) Query: 25 PVAGIDEVGRGALAGPVVV-AAII-LDPNNIPFGIN---DSKKISHKKR----------- 68 V GI E GRG++ GP+ A+I L ++ + DSK + ++R Sbjct: 45 LVLGIGEAGRGSVIGPIFYTGAVISLGEHDDLVQLCHVADSKTLDERRRLASLQQLHLLK 104 Query: 69 -----------EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRS 117 EE + IT + ++++ SH+ + A + Sbjct: 105 TFRSFTVCVSPEEFSKTITGRSGRNLNTLSHETAIQIISEATLASAGKLCAAYVGTAGPP 164 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 A + K DS ++AASI+AK TRD + + Sbjct: 165 ATYQEGLAGRFPHLRVTVAKKADSQFPIVSAASIVAKTTRDTAIEALGE 213 >gi|295399299|ref|ZP_06809281.1| ribonuclease HIII [Geobacillus thermoglucosidasius C56-YS93] gi|294978765|gb|EFG54361.1| ribonuclease HIII [Geobacillus thermoglucosidasius C56-YS93] Length = 306 Score = 45.0 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP-----FGINDSKKISHKKREELYEKITSSAII 81 G DE G+G GP+V A+ +L + G+ DSKKIS+K+ L +I Sbjct: 99 IGTDESGKGDFFGPLVTASFLLQSKDAENKLIAIGVTDSKKISNKQIIALASEIKKIGPY 158 Query: 82 SISSASHQYIDKHN 95 SI + ++ Sbjct: 159 SIVKIGPKKYNELY 172 >gi|332358153|gb|EGJ35983.1| ribonuclease HIII [Streptococcus sanguinis SK1056] Length = 296 Score = 45.0 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 59/184 (32%), Gaps = 21/184 (11%) Query: 19 REKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK 74 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ +K +L Sbjct: 77 ASQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDRKIRQLATV 135 Query: 75 ITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALID 121 + S + ++ ++A + + +++ + Sbjct: 136 LKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQ 195 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + I + A ++ + + RD + + G+ G Sbjct: 196 QNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYTLPSG 255 Query: 179 YPTA 182 + Sbjct: 256 AGSK 259 >gi|328945874|gb|EGG40025.1| ribonuclease HIII [Streptococcus sanguinis SK1087] Length = 296 Score = 45.0 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 21/184 (11%) Query: 19 REKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK 74 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L Sbjct: 77 ASQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPV 135 Query: 75 ITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALID 121 + S + ++ ++A + + +++ + Sbjct: 136 LKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQ 195 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + I + A ++ + + RD + + G+ G Sbjct: 196 QNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYTLPSG 255 Query: 179 YPTA 182 + Sbjct: 256 AGSK 259 >gi|327472875|gb|EGF18302.1| ribonuclease HIII [Streptococcus sanguinis SK408] Length = 296 Score = 45.0 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 21/184 (11%) Query: 19 REKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK 74 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L Sbjct: 77 ASQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPV 135 Query: 75 ITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALID 121 + S + ++ ++A + + +++ + Sbjct: 136 LKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQ 195 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + I + A ++ + + RD + + G+ G Sbjct: 196 QNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYTLPSG 255 Query: 179 YPTA 182 + Sbjct: 256 AGSK 259 >gi|162447673|ref|YP_001620805.1| ribonuclease HIII [Acholeplasma laidlawii PG-8A] gi|161985780|gb|ABX81429.1| ribonuclease HIII [Acholeplasma laidlawii PG-8A] Length = 285 Score = 45.0 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 25/162 (15%) Query: 27 AGIDEVGRGALAGPVVVA---AIILDPNN-IPFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G GPVVV A I D G+ DSK +++K+ +L I + S Sbjct: 77 IGSDEVGTGDALGPVVVCSAYASIEDIEFLEKLGVKDSKSMTNKEIVKLGPVIANRLTHS 136 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQV------------------IPRSALIDGRS 124 I + + ++ L+ I + N + + + Sbjct: 137 IVILTPEKFNEQTQKGLNLNKIKALLHNHMIIKTTSKVEAAVPVILDQFCLPTHYFNYLK 196 Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 + + K +S+ LS+AAASIIA R + H+ Sbjct: 197 DEKLVYRDVEFYTKAESVHLSVAAASIIA---RYAFLVKMHQ 235 >gi|73916772|gb|AAZ93254.1| RNase HII [Streptococcus pneumoniae] Length = 291 Score = 45.0 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ +KI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKDKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPIKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + LS+A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLSVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|294660432|ref|NP_853189.2| ribonuclease HIII [Mycoplasma gallisepticum str. R(low)] gi|284812092|gb|AAP56757.2| Ribonuclease HIII [Mycoplasma gallisepticum str. R(low)] gi|284930671|gb|ADC30610.1| Ribonuclease HIII [Mycoplasma gallisepticum str. R(high)] Length = 331 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G GP+V ++ + I G+ DSK ++ K + ++ Sbjct: 111 IGCDEVGVGEYLGPIVTCCALVSDDQIDQINRLGVKDSKLLTDDKIVNIANELRKLIKFQ 170 Query: 83 ISSASHQ 89 I + Sbjct: 171 IFCFDPK 177 >gi|327459066|gb|EGF05414.1| ribonuclease HIII [Streptococcus sanguinis SK1057] Length = 296 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 57/189 (30%), Gaps = 23/189 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + V A + P G+ DSK ++ K +L + Sbjct: 84 IGTDEVGNGSYFGGLAVVASFVSPGQHDFLRKLGVGDSKTLNDSKIRQLAPVLKEKIAHQ 143 Query: 83 ISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 S + ++ ++A + + +++ + Sbjct: 144 ALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQQNYKKYLK 203 Query: 130 PCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA-KHQ 185 + I + A ++ + + RD + + G+ G + H Sbjct: 204 QEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYTLPSGAGSKSDHV 263 Query: 186 QV--IKEKG 192 ++ G Sbjct: 264 ASQILQAYG 272 >gi|313889744|ref|ZP_07823386.1| ribonuclease HIII [Streptococcus pseudoporcinus SPIN 20026] gi|313121789|gb|EFR44886.1| ribonuclease HIII [Streptococcus pseudoporcinus SPIN 20026] Length = 305 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 64/193 (33%), Gaps = 25/193 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + V A ++P++ P G+NDSK ++ K ++ + Sbjct: 88 PLIGSDEVGNGSYFGGLAVVASYVEPSDHPYLKELGVNDSKTLNDHKIRQIAPLLEKKIR 147 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + V+ +++ + Sbjct: 148 HKALLLSPKKYNQLVGPSKAYNAVSVKVALHNQAIFLLLQSGVKPSKIVIDAFTSKQNYQ 207 Query: 126 PEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + I + A ++ + + R+ + + G+ G A Sbjct: 208 KHLKKEKNQFPNPLSFIEKAEGQFLAVAVSSIIARNLFLENLDHLSKELGYQLPSGAGKA 267 Query: 183 KHQQV---IKEKG 192 IK G Sbjct: 268 SDLVASQLIKAYG 280 >gi|187734791|ref|YP_001876903.1| ribonuclease HIII [Akkermansia muciniphila ATCC BAA-835] gi|187424843|gb|ACD04122.1| ribonuclease HIII [Akkermansia muciniphila ATCC BAA-835] Length = 294 Score = 44.6 bits (104), Expect = 0.008, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Query: 22 NMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREEL 71 P GIDE G+G GP+VVA + +D G+ DSK + R Sbjct: 81 GFVPHFGIDESGKGDYFGPLVVAGVYVDGGIGAALRKLGVCDSKLVGSSSRIRC 134 >gi|157149738|ref|YP_001449575.1| ribonuclease HIII [Streptococcus gordonii str. Challis substr. CH1] gi|189043678|sp|A8AUW5|RNH3_STRGC RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|157074532|gb|ABV09215.1| ribonuclease HIII [Streptococcus gordonii str. Challis substr. CH1] Length = 296 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 23/193 (11%) Query: 23 MWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSS 78 + G DEVG G+ G + VVA+ + G+ DSK ++ +K +L + Sbjct: 80 YQAMIGTDEVGNGSYFGGLAVVASFVTKEQEDFLRKLGVGDSKTLTDQKIRQLAPILKEK 139 Query: 79 AIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + ++ Q++ + Sbjct: 140 ITHQALLLSPKKYNQVIASGYNAVSVKVALHNQAIYLLLEKGIKPDQIVIDAFTSSTNYQ 199 Query: 126 PEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + + A ++ + + RD + + G+ G Sbjct: 200 RYVKQERNQVSQAIHLEEKAEGKYLAVAVSSIIARDLFLENLEILSQELGYQLPSGAGAK 259 Query: 183 KHQQV---IKEKG 192 Q +K G Sbjct: 260 SDQVASQILKAYG 272 >gi|322387275|ref|ZP_08060885.1| ribonuclease HIII [Streptococcus infantis ATCC 700779] gi|321141804|gb|EFX37299.1| ribonuclease HIII [Streptococcus infantis ATCC 700779] Length = 293 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 27/194 (13%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKK 67 +++E +V +N + G DEVG G+ G + V A + P+ F G+ DSK ++ +K Sbjct: 67 YQVEQVVSGQNFPLI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKVGVGDSKTLTDQK 125 Query: 68 REE----LYEKITSSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVI 114 + L EKI A++ S ++ I + ++A + VE +++ Sbjct: 126 IRQLASLLKEKIQHQALLLSPSKYNEVIGERYNAVSVKVALHNQAIYLLLQKEVEPEKIV 185 Query: 115 PRSALIDGRSIPE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 + K + L++A +SIIA RD + Sbjct: 186 IDAFTSSQNYQKYLKNEANHFSNPVTLEEKAEGKYLAVAVSSIIA---RDLFLENLENLG 242 Query: 169 PDYGFDSHVGYPTA 182 + G+ G A Sbjct: 243 RELGYQLPSGAGAA 256 >gi|324994248|gb|EGC26162.1| ribonuclease HIII [Streptococcus sanguinis SK678] gi|325697911|gb|EGD39795.1| ribonuclease HIII [Streptococcus sanguinis SK160] Length = 296 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 21/184 (11%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEK 74 +N + G DEVG G+ G + V A ++ P+ G+ DSK ++ K +L Sbjct: 77 ASQNFALI-GTDEVGNGSYFGGLAVVASLVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPV 135 Query: 75 ITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALID 121 + S + ++ ++A + + +++ + Sbjct: 136 LKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGINPEKIVIDAFTSQ 195 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + I + A ++ + + RD + + G+ G Sbjct: 196 QNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYTLPSG 255 Query: 179 YPTA 182 + Sbjct: 256 AGSK 259 >gi|323142207|ref|ZP_08077041.1| ribonuclease HIII [Phascolarctobacterium sp. YIT 12067] gi|322413270|gb|EFY04155.1| ribonuclease HIII [Phascolarctobacterium sp. YIT 12067] Length = 324 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 27 AGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSS-AII 81 AG DE G+G G +VVAA ++D G+ D K ++ KK EL I ++ Sbjct: 115 AGSDESGKGDFFGSLVVAATVVDNTTAAKLQAAGVKDCKLLTDKKILELENVIKATVVDY 174 Query: 82 SISSASHQYIDKHNIHKA 99 S+ + + A Sbjct: 175 SVLELKPKIYNLRYEQVA 192 >gi|171779238|ref|ZP_02920209.1| hypothetical protein STRINF_01086 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282294|gb|EDT47721.1| hypothetical protein STRINF_01086 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 299 Score = 44.6 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 28/183 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K ++ + Sbjct: 83 PLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPILEEKIK 142 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S Q ++ ++A + V+ +++ + Sbjct: 143 HKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNYE 202 Query: 126 PE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 K + L++A +SIIA R+ + K + + G Sbjct: 203 KYLKNEVNHFDNPLTLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVQYKLPSGA 259 Query: 180 PTA 182 + Sbjct: 260 GSK 262 >gi|149012155|ref|ZP_01833264.1| ribonuclease HIII [Streptococcus pneumoniae SP19-BS75] gi|147763757|gb|EDK70691.1| ribonuclease HIII [Streptococcus pneumoniae SP19-BS75] Length = 293 Score = 44.6 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|168485538|ref|ZP_02710046.1| ribonuclease hiii [Streptococcus pneumoniae CDC1087-00] gi|73916736|gb|AAZ93236.1| RNase HII [Streptococcus pneumoniae] gi|73916800|gb|AAZ93268.1| RNase HII [Streptococcus pneumoniae] gi|73916812|gb|AAZ93274.1| RNase HII [Streptococcus pneumoniae] gi|183571185|gb|EDT91713.1| ribonuclease hiii [Streptococcus pneumoniae CDC1087-00] Length = 290 Score = 44.6 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSIKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916722|gb|AAZ93229.1| RNase HII [Streptococcus pneumoniae] Length = 290 Score = 44.6 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|73916710|gb|AAZ93223.1| RNase HII [Streptococcus pneumoniae] gi|73916742|gb|AAZ93239.1| RNase HII [Streptococcus pneumoniae] gi|73916744|gb|AAZ93240.1| RNase HII [Streptococcus pneumoniae] gi|73916746|gb|AAZ93241.1| RNase HII [Streptococcus pneumoniae] gi|73916748|gb|AAZ93242.1| RNase HII [Streptococcus pneumoniae] Length = 290 Score = 44.6 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +S+IA RD + + G+ G T Sbjct: 199 LAQETNRFSNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|223932747|ref|ZP_03624745.1| ribonuclease HIII [Streptococcus suis 89/1591] gi|223898580|gb|EEF64943.1| ribonuclease HIII [Streptococcus suis 89/1591] Length = 296 Score = 44.6 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 75/194 (38%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + ++ G++DSKK++ +K ++ EKI Sbjct: 83 PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQKICQIAPLLKEKIP 142 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I++ ++A + V+ +++ + Sbjct: 143 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 202 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA R + + G + G + Sbjct: 203 LKKEANQFANPVTLEEKAEGKYLAVAVSSIIA---RAMFLENLVQLGQLVGMNLPSGAGS 259 Query: 182 AKHQQV---IKEKG 192 Q +K+ G Sbjct: 260 KSDQVAASILKQYG 273 >gi|306828934|ref|ZP_07462126.1| ribonuclease HIII [Streptococcus mitis ATCC 6249] gi|304429112|gb|EFM32200.1| ribonuclease HIII [Streptococcus mitis ATCC 6249] Length = 293 Score = 44.2 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 72/196 (36%), Gaps = 23/196 (11%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIP 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I + ++A + + V+ +++ + Sbjct: 139 HQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQNGVQPEKIVIDAFTSPKNYDKY 198 Query: 128 DLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH 184 K + A ++ + + RD + + G+ G TA Sbjct: 199 LAQEANRFPNKVSLEEKAEGKYLAVAVSSIIARDLFLENLENLGRELGYQLPSGAGTASD 258 Query: 185 QQV---IKEKGPSCIH 197 + ++ G +H Sbjct: 259 KVASKILQAYGMKGLH 274 >gi|332363155|gb|EGJ40940.1| ribonuclease HIII [Streptococcus sanguinis SK49] Length = 296 Score = 44.2 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 59/184 (32%), Gaps = 21/184 (11%) Query: 19 REKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK 74 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L Sbjct: 77 ASQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQLAPV 135 Query: 75 ITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALID 121 + S + ++ ++A + ++ +++ + Sbjct: 136 LKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKSLNPEKIVIDAFTSQ 195 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + I + A ++ + + RD + + G+ G Sbjct: 196 QNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYTLPSG 255 Query: 179 YPTA 182 + Sbjct: 256 AGSK 259 >gi|330832064|ref|YP_004400889.1| ribonuclease HIII [Streptococcus suis ST3] gi|329306287|gb|AEB80703.1| ribonuclease HIII [Streptococcus suis ST3] Length = 296 Score = 44.2 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 75/194 (38%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + ++ G++DSKK++ +K ++ EKI Sbjct: 83 PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQKICQVAPLLKEKIP 142 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I++ ++A + V+ +++ + Sbjct: 143 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 202 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA R + + G + G + Sbjct: 203 LKKEANQFANPVTLEEKAEGKYLAVAVSSIIA---RAMFLENLVQLGQLVGMNLPSGAGS 259 Query: 182 AKHQQV---IKEKG 192 Q +K+ G Sbjct: 260 KSDQVAASILKQYG 273 >gi|302023278|ref|ZP_07248489.1| ribonuclease HIII [Streptococcus suis 05HAS68] Length = 273 Score = 44.2 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 75/194 (38%), Gaps = 29/194 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + ++ G++DSKK++ +K ++ EKI Sbjct: 83 PMIGTDEVGNGSYFGGLAVVASFVRPEDHAFLKSLGVDDSKKMTDQKICQVAPLLKEKIP 142 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ ++ I++ ++A + V+ +++ + Sbjct: 143 HQALLLSPKKYNEVIEQGYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSSQNYQKY 202 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA R + + G + G + Sbjct: 203 LKKEANQFANPVTLEEKAEGKYLAVAVSSIIA---RAMFLENLVQLGQLVGMNLPSGAGS 259 Query: 182 AKHQQV---IKEKG 192 Q +K+ G Sbjct: 260 KSDQVAASILKQYG 273 >gi|193216613|ref|YP_001999855.1| ribonuclease HIII [Mycoplasma arthritidis 158L3-1] gi|193001936|gb|ACF07151.1| ribonuclease HIII [Mycoplasma arthritidis 158L3-1] Length = 236 Score = 44.2 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 42/223 (18%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSS 78 + G+DE G G PV+ + + N G+ DSK + K EL K+ + Sbjct: 8 YDLLIGVDETGVGDYFTPVISVSCFIPKTNLELVKELGVKDSKLLKENKIIELASKLKTL 67 Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIP------------RSALIDGRSIP 126 + S +K K + I + + + R + Sbjct: 68 VKWKSLTLSQAGYNKLISAKINNNEIKTLIHSKTINNLLKVLDQKVDVLVDQYTISRQVY 127 Query: 127 EDLPCQAFAVIKGDSISLSIA------------AASIIAKVTRDRLMRIAHKKYPDYGFD 174 E+ + ++ D + A + + + R L+ + Y F+ Sbjct: 128 ENHLIKLQSIKWLDFQKPNATIYLTTKAESKSLAVASASIIARSILLEKIKAQREQYNFN 187 Query: 175 SHVGYPTAKHQ-QVI---KEKG------PSCIHRLTFRPLRNL 207 +G + K + + K+ G S +F+ + + Sbjct: 188 FSLG-ASKKIISEGLEFAKKFGLEELKKVSKF---SFKITKEI 226 >gi|58699315|ref|ZP_00374097.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] gi|58534168|gb|EAL58385.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila ananassae] Length = 101 Score = 44.2 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 10/25 (40%) Query: 182 AKHQQVIKEKGPSCIHRLTFRPLRN 206 +H I G + HR F P+ Sbjct: 75 KQHLNAIGLYGITEHHRRNFAPISR 99 >gi|332522787|ref|ZP_08399039.1| ribonuclease HIII [Streptococcus porcinus str. Jelinkova 176] gi|332314051|gb|EGJ27036.1| ribonuclease HIII [Streptococcus porcinus str. Jelinkova 176] Length = 319 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 25/193 (12%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + V A ++P + P G+NDSK ++ K ++ + Sbjct: 102 PLIGSDEVGNGSYFGGLAVVASYVEPTDHPYLKELGVNDSKTLNDHKIRQIAPLLEEKIR 161 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S Q ++ ++A + V+ +++ + Sbjct: 162 HKALLLSPQKYNQMVGPDKAYNAVSVKVALHNQAIFLLLQSGVKPSKIVIDAFTSKQNYQ 221 Query: 126 PEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + I + A ++ + + R+ + + G+ G A Sbjct: 222 KHLKKEKNQFPNPLSLIEKAEGQFLAVAVSSIIARNLFLENLDHLSKELGYQLPSGAGKA 281 Query: 183 KHQQV---IKEKG 192 IK G Sbjct: 282 SDLVASQLIKAYG 294 >gi|222151572|ref|YP_002560728.1| hypothetical protein MCCL_1325 [Macrococcus caseolyticus JCSC5402] gi|254808012|sp|B9E764|RNH3_MACCJ RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|222120697|dbj|BAH18032.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 313 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 54/190 (28%), Gaps = 23/190 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKR---EELYEKITSSA 79 G DE G G GP+ V A + N G+ DSK + ++ E I + Sbjct: 101 IGSDEAGSGDYFGPMTVVASYVSKKNAEILKVLGVMDSKNLKDRQIIELAEQIIPIIPHS 160 Query: 80 IISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ + + + + + + A+ H V+ + + + Q Sbjct: 161 LLVLDNIKYNERKQMGWSQVKMKAVLHNEAIKNVLNKIEEPVDYIVIDQFAVQGVYENYA 220 Query: 140 DSISLSIAAASIIAK-------------VTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQ 186 K + R ++ + + G G + Sbjct: 221 LGAIPERNKTKFETKGESKAIAIAASSIIARYAFVKHFEQIIKETGISITKGAGAKVDVE 280 Query: 187 V---IKEKGP 193 IK +G Sbjct: 281 AAKIIKLRGI 290 >gi|270293333|ref|ZP_06199542.1| ribonuclease HIII [Streptococcus sp. M143] gi|270278182|gb|EFA24030.1| ribonuclease HIII [Streptococcus sp. M143] Length = 293 Score = 44.2 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 20/178 (11%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ + Sbjct: 79 PMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKVQ 138 Query: 81 ISISSASH--------QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRS--IPEDLP 130 S + + ++ A + + V P +ID + D Sbjct: 139 HQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPERIVIDAFTSPKNYDKY 198 Query: 131 CQAFAVIKGDSISLSIA------AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 A + ISL A ++ + + RD + + G+ G TA Sbjct: 199 LTQEANRFPNKISLEEKAEGKYLAVAVSSIIARDLFLESLENLGRELGYQLPSGAGTA 256 >gi|293364827|ref|ZP_06611544.1| ribonuclease HIII [Streptococcus oralis ATCC 35037] gi|307703076|ref|ZP_07640023.1| ribonuclease HIII [Streptococcus oralis ATCC 35037] gi|291316277|gb|EFE56713.1| ribonuclease HIII [Streptococcus oralis ATCC 35037] gi|307623469|gb|EFO02459.1| ribonuclease HIII [Streptococcus oralis ATCC 35037] Length = 293 Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 29/199 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ + Sbjct: 79 PMIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIS 138 Query: 81 ISISSASH--------QYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPC- 131 S + + ++ A + + V P +IDG + P++ Sbjct: 139 HQALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDGFTSPKNYDKY 198 Query: 132 ----------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 + K + L++A +SIIA RD + + G+ G T Sbjct: 199 LAQEANRFPNKITLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 AKHQQV---IKEKGPSCIH 197 A + ++ G +H Sbjct: 256 ASDKVASKILQAYGMKGLH 274 >gi|322377071|ref|ZP_08051563.1| ribonuclease HIII [Streptococcus sp. M334] gi|321281784|gb|EFX58792.1| ribonuclease HIII [Streptococcus sp. M334] Length = 293 Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K +L + Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQLAPILKDKIQ 138 Query: 81 ISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 S ++ ++A + ++ +++ + Sbjct: 139 HQELLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGIQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|222153672|ref|YP_002562849.1| ribonuclease HIII [Streptococcus uberis 0140J] gi|254808016|sp|B9DVL0|RNH3_STRU0 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|222114485|emb|CAR43350.1| ribonuclease HIII [Streptococcus uberis 0140J] Length = 301 Score = 44.2 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 22/180 (12%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K ++ + Sbjct: 83 PLIGSDEVGNGSYFGGLAVVASFVKPEDHDYLKQLGVDDSKSLTDHKIRQIAPLLEEKIP 142 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 + Q + ++A + V ++I + + Sbjct: 143 HKSLLLTPQKYNTLVGKGKAYNAVSVKVALHNQAIFLLLQQKVIPERIIIDAFTSHSNYL 202 Query: 126 PEDLPCQAFAVIK---GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTA 182 + + A ++ + + R+ + + G+ G + Sbjct: 203 KHLKTEKNQFTEAITLIEKAESQFLAVAVSSIIARNLFLENLDNLSNELGYQLPSGAGSK 262 >gi|326203823|ref|ZP_08193685.1| ribonuclease HIII [Clostridium papyrosolvens DSM 2782] gi|325985921|gb|EGD46755.1| ribonuclease HIII [Clostridium papyrosolvens DSM 2782] Length = 302 Score = 43.8 bits (102), Expect = 0.013, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 5/75 (6%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI-----PFGINDSKKISHKKREELYEKITSSAII 81 G DE G+G GP+V A +++ + G+ DSKK+S + + + ++I Sbjct: 90 IGSDESGKGDFFGPLVTVAFLIENDKQVIELEKIGVRDSKKVSDNRIKIISQQIQEIGNF 149 Query: 82 SISSASHQYIDKHNI 96 + ++ Sbjct: 150 DKILITPIKYNELYD 164 >gi|108803638|ref|YP_643575.1| RNase HII [Rubrobacter xylanophilus DSM 9941] gi|108764881|gb|ABG03763.1| RNase HII [Rubrobacter xylanophilus DSM 9941] Length = 311 Score = 43.8 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%) Query: 27 AGIDEVGRGALAGPVVVAAIIL-----DPNNIPFGINDSKKISHKK 67 GIDE G+G GP+VVA + L D G+ DSK + ++ Sbjct: 92 IGIDEAGKGEYLGPLVVAGVRLSGAGDDLRLRELGVRDSKALGAER 137 >gi|309790298|ref|ZP_07684866.1| ribonuclease HIII [Oscillochloris trichoides DG6] gi|308227686|gb|EFO81346.1| ribonuclease HIII [Oscillochloris trichoides DG6] Length = 312 Score = 43.8 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 17/23 (73%) Query: 27 AGIDEVGRGALAGPVVVAAIILD 49 G+DE G+G GP+VVAA+ +D Sbjct: 98 VGMDESGKGDWYGPLVVAAVYVD 120 >gi|307710539|ref|ZP_07646975.1| ribonuclease HIII [Streptococcus mitis SK564] gi|307618692|gb|EFN97832.1| ribonuclease HIII [Streptococcus mitis SK564] Length = 293 Score = 43.8 bits (102), Expect = 0.014, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + + +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGAQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA RD + + G+ G T Sbjct: 199 LAQEVNRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|325108602|ref|YP_004269670.1| hypothetical protein Plabr_2044 [Planctomyces brasiliensis DSM 5305] gi|324968870|gb|ADY59648.1| hypothetical protein Plabr_2044 [Planctomyces brasiliensis DSM 5305] Length = 323 Score = 43.8 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIIL 48 V GIDE G G GP+V+ A + Sbjct: 2 SGRRFVIGIDEAGYGPNIGPLVIGATVW 29 >gi|289168568|ref|YP_003446837.1| predicted ribonuclease HIII [Streptococcus mitis B6] gi|288908135|emb|CBJ22976.1| predicted ribonuclease HIII [Streptococcus mitis B6] Length = 293 Score = 43.8 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + ++ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGIQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|332364401|gb|EGJ42175.1| ribonuclease HIII [Streptococcus sanguinis SK355] Length = 296 Score = 43.8 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 21/184 (11%) Query: 19 REKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEK 74 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K +L Sbjct: 77 ASQNFALI-GTDEVGNGSYFGGLAVVASFVTPNQHDFLRKLGVGDSKTLNDSKIRQLAPV 135 Query: 75 ITSSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALID 121 + S + ++ ++A + + +++ + Sbjct: 136 LKEKIAHQALLLSPEKYNEVIASGYNAVSVKVALHNQAIYLLLQKGLNPEKIVIDAFTSQ 195 Query: 122 GRSIPEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVG 178 + I + A ++ + + RD + + G+ G Sbjct: 196 QNYNKYLKQEKNHFPNPVSLIEKAEGKFLAVAVSSIIARDLFLENLENLSQELGYTLPSG 255 Query: 179 YPTA 182 + Sbjct: 256 AGSK 259 >gi|217967101|ref|YP_002352607.1| ribonuclease HII/HIII [Dictyoglomus turgidum DSM 6724] gi|217336200|gb|ACK41993.1| ribonuclease HII/HIII [Dictyoglomus turgidum DSM 6724] Length = 424 Score = 43.8 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 76/221 (34%), Gaps = 37/221 (16%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDSKKISHKKREELYEK---- 74 + N V G DEVG+G + GP++ +++ + I ++ K KK Sbjct: 77 YDLNKDYVLGFDEVGKGEVFGPIITCGVLIRKDVISQIPSELKTPDTKKSHGFEYWTRIL 136 Query: 75 ------ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN----------LQVIPRSA 118 I+ I + ID+ NI++ + ++ ++++ Sbjct: 137 KVLEDLISDGFYYIIDIIQPREIDRFNINQLLDLSYMKLIKQLITDLPYRKEVRIVIDDY 196 Query: 119 LIDGRSIPEDLPCQAFAVI------KGDSISLSIAAASIIAKVTRDRLMRIAHKKY--PD 170 + + + + L AS+IAK R+ +++ ++Y P+ Sbjct: 197 GVGEGLQRFLEIIKGENNFETIIVTESEDKFLEAKLASLIAKSYRESILKNLQERYEIPE 256 Query: 171 YGFDSHVGYPTAKHQQVIKEKGPSC----IHRLTF-RPLRN 206 G + K + + S R +F + ++ Sbjct: 257 ---SLIKGNMSNKALESFLKN-YSKDDLWFIRRSFGKRIKK 293 >gi|307708231|ref|ZP_07644698.1| ribonuclease hiii [Streptococcus mitis NCTC 12261] gi|307615677|gb|EFN94883.1| ribonuclease hiii [Streptococcus mitis NCTC 12261] Length = 293 Score = 43.4 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDLKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I ++A + ++ +++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLKKGLQPEKIVIDAFTSAKNYDKY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA RD + + G+ G T Sbjct: 199 LAQEANRFSNPISLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGT 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|306834303|ref|ZP_07467420.1| ribonuclease HIII [Streptococcus bovis ATCC 700338] gi|304423476|gb|EFM26625.1| ribonuclease HIII [Streptococcus bovis ATCC 700338] Length = 300 Score = 43.4 bits (101), Expect = 0.017, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 68/196 (34%), Gaps = 31/196 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K ++ + ++ Sbjct: 84 PLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPILENNIK 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S Q ++ ++A + V+ +++ + Sbjct: 144 HKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNYQ 203 Query: 126 PEDLPC------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 K + L++A +SIIA R+ + K + + G Sbjct: 204 KYLKNEANQFANPLTLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVQYKLPSGA 260 Query: 180 PTAKHQQV---IKEKG 192 + + + G Sbjct: 261 GSQSDKAASQILTAYG 276 >gi|166154229|ref|YP_001654347.1| ribonuclease HIII [Chlamydia trachomatis 434/Bu] gi|166155104|ref|YP_001653359.1| ribonuclease HIII [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|255348370|ref|ZP_05380377.1| ribonuclease HIII [Chlamydia trachomatis 70] gi|255502911|ref|ZP_05381301.1| ribonuclease HIII [Chlamydia trachomatis 70s] gi|255506580|ref|ZP_05382219.1| ribonuclease HIII [Chlamydia trachomatis D(s)2923] gi|301335477|ref|ZP_07223721.1| ribonuclease HIII [Chlamydia trachomatis L2tet1] gi|226741381|sp|B0BAZ4|RNH3_CHLTB RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|238687433|sp|B0B9B5|RNH3_CHLT2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|165930217|emb|CAP03702.1| ribonuclease HIII [Chlamydia trachomatis 434/Bu] gi|165931092|emb|CAP06656.1| ribonuclease HIII [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|296438311|gb|ADH20464.1| ribonuclease HIII [Chlamydia trachomatis E/11023] Length = 300 Score = 43.4 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF-----GINDSKKISHKKREELYEK 74 ++++ G+DE G+G GP+ A + I DSK I K L + Sbjct: 82 QQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQN 141 Query: 75 ITSSAIISISSASHQYID 92 I S + + + + Sbjct: 142 IRSLCACKVITLFPEKYN 159 >gi|298244281|ref|ZP_06968087.1| ribonuclease HIII [Ktedonobacter racemifer DSM 44963] gi|297551762|gb|EFH85627.1| ribonuclease HIII [Ktedonobacter racemifer DSM 44963] Length = 311 Score = 43.4 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSA 79 G DE G+G GP+V+AA+ +D + G+ DSK+++ E+ +I Sbjct: 103 IGCDESGKGDYYGPLVMAALYVDNHTEEQLLALGVRDSKRLTDAVMLEMASEIERIC 159 >gi|331266981|ref|YP_004326611.1| ribonuclease HIII [Streptococcus oralis Uo5] gi|326683653|emb|CBZ01271.1| ribonuclease HIII [Streptococcus oralis Uo5] Length = 293 Score = 43.4 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 29/197 (14%) Query: 27 AGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE----LYEKITSS 78 G DEVG G+ G + VVA+ + + G+ DSK ++ +K + L EKI Sbjct: 81 IGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQLAPILKEKIQHQ 140 Query: 79 AIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE-- 127 A++ S ++ I + ++A + V+ +++ + Sbjct: 141 ALLLSPSKYNEVIGERYNAVSVKVALHNQAIFLLLQKGVQPEKIVIDAFTSPKNYDKYLA 200 Query: 128 ----DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAK 183 P + K + L++A +SIIA RD + + G+ G TA Sbjct: 201 QEANRFPNKITLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGTAS 257 Query: 184 HQQV---IKEKGPSCIH 197 + ++ G +H Sbjct: 258 DKVASKILQAYGMKGLH 274 >gi|73916726|gb|AAZ93231.1| RNase HII [Streptococcus pneumoniae] Length = 294 Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 30/185 (16%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREEL----YEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K ++ EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHAFLRKLGVGDSKTLTDQKIRQIAPILKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQV----------IPRS 117 A++ S ++ I ++A + V+ ++ + Sbjct: 139 HQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLLLQKGVQPEKIVIDAFTSAKNYDKY 198 Query: 118 ALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHV 177 + + K + L++A +S+IA RD + + G+ Sbjct: 199 LAQETNRFSNPISNPISLEEKAEGKYLAVAVSSVIA---RDLFLENLENLGRELGYQLPS 255 Query: 178 GYPTA 182 G TA Sbjct: 256 GAGTA 260 >gi|325979098|ref|YP_004288814.1| ribonuclease HIII [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179026|emb|CBZ49070.1| Ribonuclease HIII [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 300 Score = 43.1 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 65/182 (35%), Gaps = 28/182 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K ++ + ++ Sbjct: 84 PLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPVLENNIK 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S Q ++ ++A + V+ +++ + Sbjct: 144 HKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNYQ 203 Query: 126 PEDLPC------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 K + L++A +SIIA R+ + K + + G Sbjct: 204 KYLKNEANQFANPLTLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVQYKLPSGA 260 Query: 180 PT 181 + Sbjct: 261 GS 262 >gi|306832179|ref|ZP_07465333.1| ribonuclease HIII [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425618|gb|EFM28736.1| ribonuclease HIII [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 300 Score = 43.1 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 65/182 (35%), Gaps = 28/182 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K ++ + ++ Sbjct: 84 PLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPVLENNIK 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S Q ++ ++A + V+ +++ + Sbjct: 144 HKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNYQ 203 Query: 126 PEDLPC------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 K + L++A +SIIA R+ + K + + G Sbjct: 204 KYLKNEANQFANPLTLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVQYKLPSGA 260 Query: 180 PT 181 + Sbjct: 261 GS 262 >gi|288906134|ref|YP_003431356.1| ribonuclease HIII [Streptococcus gallolyticus UCN34] gi|288732860|emb|CBI14439.1| ribonuclease HIII [Streptococcus gallolyticus UCN34] Length = 300 Score = 43.1 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 65/182 (35%), Gaps = 28/182 (15%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ K ++ + ++ Sbjct: 84 PLIGSDEVGNGSYFGGLAVVASFVTPDDHALLKKLGVDDSKNLTDSKIRQIAPVLENNIK 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S Q ++ ++A + V+ +++ + Sbjct: 144 HKALLLSPQKYNQVVGKGKMHNAVSVKVALHNQAIYLLLQDGVKPEKIVIDAFTSRQNYQ 203 Query: 126 PEDLPC------QAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 K + L++A +SIIA R+ + K + + G Sbjct: 204 KYLKNEANQFANPLTLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVQYKLPSGA 260 Query: 180 PT 181 + Sbjct: 261 GS 262 >gi|312898932|ref|ZP_07758320.1| ribonuclease HIII [Megasphaera micronuciformis F0359] gi|310620094|gb|EFQ03666.1| ribonuclease HIII [Megasphaera micronuciformis F0359] Length = 318 Score = 43.1 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 16 AMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREE 70 + G DE G+G + GP+V AA ++ +G+ DSK ++ K+ E Sbjct: 98 QDLCPDGTPCWIGADESGKGDVFGPLVTAACLVTRAEAATLRSWGVTDSKALTDKRILE 156 >gi|125625302|ref|YP_001033785.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris MG1363] gi|166226671|sp|A2RP65|RNH3_LACLM RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|124494110|emb|CAL99111.1| RnhA protein [Lactococcus lactis subsp. cremoris MG1363] gi|300072114|gb|ADJ61514.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris NZ9000] Length = 292 Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 21/181 (11%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT 76 K + G DEVG G+ G ++V A + N++ F G+ DSKK++ +K ++ K+ Sbjct: 73 KKQTNLIGTDEVGNGSYFGGLMVTASFVSDNHLKFLKEMGVADSKKLTDEKICQIAPKLI 132 Query: 77 SSAIISISSASHQYIDKHN-------------IHKATLDAIYHAVENLQVIPRSALIDGR 123 + ++ ++A + I A Sbjct: 133 EEIPHVALVVEPEKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGSQPESIVIDAFTTEA 192 Query: 124 SIPED----LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGY 179 + + + A ++ + ++R + + K + GF G Sbjct: 193 NYKKYVSAEKNHPLTNITLLTKAEDQFLAVAVSSIISRYKFLENLKKLSKESGFTLPSGA 252 Query: 180 P 180 Sbjct: 253 G 253 >gi|23099583|ref|NP_693049.1| ribonuclease HIII [Oceanobacillus iheyensis HTE831] gi|81746030|sp|Q8EPH7|RNH3_OCEIH RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|22777813|dbj|BAC14084.1| ribonuclease HIII (RNase HIII) [Oceanobacillus iheyensis HTE831] Length = 308 Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 4/115 (3%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAIIS 82 G DE G G GP+ VAA+ G+ DSK ++ K +++ ++I I Sbjct: 95 IGSDEAGTGDYFGPITVAALFATKEQQLKLKQIGVRDSKHLNDTKIKQIAKEIAHLQIPY 154 Query: 83 ISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVI 137 K A+ + I + + + F Sbjct: 155 SLLLLPNGKYNKLQAKGWSQGKMKAMLHHHAIDKLLQKIDVRSLKGIVIDQFCQP 209 >gi|322391517|ref|ZP_08064986.1| ribonuclease HIII [Streptococcus peroris ATCC 700780] gi|321145600|gb|EFX40992.1| ribonuclease HIII [Streptococcus peroris ATCC 700780] Length = 293 Score = 42.7 bits (99), Expect = 0.032, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 26/181 (14%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNNI---PFGINDSKKISHKKREE----LYEKIT 76 P+ G DEVG G+ G + VVA+ + + G+ DSK ++ +K + L EKI Sbjct: 79 PLIGTDEVGNGSYFGGLAVVASFVTPDQHHFLQKLGVGDSKSLTDQKIRQLAPLLKEKIQ 138 Query: 77 SSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 A++ S ++ I + ++A + VE +++ + Sbjct: 139 HQALLLSPSKYNEVIGEGYNAVSVKVALHNQAIFLLLQKGVEPEKIVIDAFTSSKNYDRY 198 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA RD + + G+ G Sbjct: 199 LKNEANHFLNPVTLEEKAEGKYLAVAVSSIIA---RDLFLENLENLGRELGYQLPSGAGA 255 Query: 182 A 182 A Sbjct: 256 A 256 >gi|323128007|gb|ADX25304.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 299 Score = 42.7 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 57/178 (32%), Gaps = 22/178 (12%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ + + + Sbjct: 84 PMIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKTLTDQTIRRIAPILEEKIS 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + + +++ + Sbjct: 144 HKSLLLSPKKYNEMVGKDKPYNAVSVKVALHNQAIYLLLQEGINPEKIVIDAFTSQSNYQ 203 Query: 126 PEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + + A ++ + + R+ + + G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESLYLAVAVSSIIARNLFLENLDTLGQELGYRLPSGAG 261 >gi|171909879|ref|ZP_02925349.1| ribonuclease HIII [Verrucomicrobium spinosum DSM 4136] Length = 305 Score = 42.7 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 12 FELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKK 67 E + + + P GIDE G+G GP+V+A ++ + G+ DSK+I Sbjct: 81 LGYEEVNQPEMFEPHLGIDESGKGDFFGPLVIAGAYVEASMARKLRDMGVMDSKRIGSDA 140 Query: 68 REE 70 R E Sbjct: 141 RIE 143 >gi|326407889|gb|ADZ64960.1| ribonuclease HIII [Lactococcus lactis subsp. lactis CV56] Length = 292 Score = 42.3 bits (98), Expect = 0.039, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 21/191 (10%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGP-VVVAAIILDPNNI---PFGINDSKKISHK 66 F A V + + G DEVG G+ G +V A+ +++ N G+ DSKK++ + Sbjct: 63 DFGHIAQVVPQKQTNLIGTDEVGNGSYFGGLMVTASFVIEENLNFLKEIGVADSKKLTDE 122 Query: 67 KREEL----YEKITSSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQV 113 K ++ ++I A++ + ++ I ++A + Sbjct: 123 KICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPEN 182 Query: 114 IPRSALIDGRSIPED----LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 I A + + V A ++ + ++R + K Sbjct: 183 IVIDAFTTEANYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSK 242 Query: 170 DYGFDSHVGYP 180 + GF G Sbjct: 243 ESGFTLPSGAG 253 >gi|251783283|ref|YP_002997588.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391915|dbj|BAH82374.1| ribonuclease HIII [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 299 Score = 42.3 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 57/178 (32%), Gaps = 22/178 (12%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSK ++ + + + Sbjct: 84 PMIGSDEVGNGSYFGGIAVVASFVDPKDHSFLKKLGVDDSKTLTDQTIRRIAPILEEKIS 143 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + + +++ + Sbjct: 144 HKSLLLSPKKYNEMVGKDKPYNAVSVKVALHNQAIYLLLQEGINPEKIVIDAFTSQSNYE 203 Query: 126 PEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + + A ++ + + R+ + + G+ G Sbjct: 204 KHLKKEKNHFPNPLTFQEKAESLYLAVAVSSIIARNLFLENLDTLGQELGYRLPSGAG 261 >gi|319946237|ref|ZP_08020477.1| ribonuclease HIII [Streptococcus australis ATCC 700641] gi|319747619|gb|EFV99872.1| ribonuclease HIII [Streptococcus australis ATCC 700641] Length = 296 Score = 42.3 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 67/203 (33%), Gaps = 24/203 (11%) Query: 14 LEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKRE 69 ++ + ++ + G DEVG G+ G + V A ++ P G+ DSK + +K Sbjct: 72 IDQALAGQDFPLI-GTDEVGNGSYFGGLAVVASLVSPEQHARLKSLGVGDSKTLDDRKIR 130 Query: 70 ELYEKITSSAIISISSASHQYIDK--------HNIHKATLDAIYHAVENLQVIPRSALID 121 L + + + ++ ++ A + + + ++D Sbjct: 131 ALAPILKKEIPHQALLLTPKKYNQVIASGYNAVSVKVALHNQAIFLLLQQGAKAQKIVVD 190 Query: 122 GRSIPEDLPCQAFAVIK--------GDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173 + ++ A + A ++ + + RD ++ + + G+ Sbjct: 191 AFTTKKNYDRYVQAEANQVPQVVTLEEKAEGKYLAVAVSSIIARDLFLQNLEELSQELGY 250 Query: 174 DSHVGYPTAKHQQV---IKEKGP 193 G T + ++ G Sbjct: 251 TLPSGAGTPSDKVAAQLLQAYGI 273 >gi|322373722|ref|ZP_08048258.1| ribonuclease HIII [Streptococcus sp. C150] gi|321278764|gb|EFX55833.1| ribonuclease HIII [Streptococcus sp. C150] Length = 296 Score = 41.9 bits (97), Expect = 0.056, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 63/181 (34%), Gaps = 28/181 (15%) Query: 27 AGIDEVGRGALAGPV-VVAAIILDPNNIP---FGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + VVA+++ ++ G++DSK ++ K +L + Sbjct: 83 IGSDEVGNGSYFGGLAVVASLVTPADHALLKSLGVDDSKNLNDSKIRQLAPLLEEKIPHK 142 Query: 83 ISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 S Q ++ ++A + + +++ + + Sbjct: 143 ALLLSPQKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQAGAKPDKIVIDAFTSEKNYQKY 202 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA R+ + K + G+ G T Sbjct: 203 LKKERNRFDNPITLEEKAEGNYLAVAVSSIIA---RNLFLENLDKLSQEVGYTLPSGAGT 259 Query: 182 A 182 Sbjct: 260 K 260 >gi|126647908|ref|XP_001388063.1| hypothetical protein [Cryptosporidium parvum Iowa II] gi|126117151|gb|EAZ51251.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II] Length = 144 Score = 41.9 bits (97), Expect = 0.057, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 20/101 (19%) Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH------------KKYPDYG 172 + K D++ S++ ASI+AKV RD + K +Y Sbjct: 1 MNIFPGINITVKPKADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISNY- 59 Query: 173 FDSHVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 + GY K + ++ G I R ++ + Sbjct: 60 -EQGSGYPGDPKTKDFLRRVFDPVFGFPNIVRFSWSTASEI 99 >gi|15674239|ref|NP_268414.1| ribonuclease HIII [Lactococcus lactis subsp. lactis Il1403] gi|281492933|ref|YP_003354913.1| ribonuclease HIII [Lactococcus lactis subsp. lactis KF147] gi|20978735|sp|Q9CDG3|RNH3_LACLA RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|12725328|gb|AAK06355.1|AE006455_1 ribonuclease HII [Lactococcus lactis subsp. lactis Il1403] gi|281376585|gb|ADA66071.1| Ribonuclease HIII [Lactococcus lactis subsp. lactis KF147] Length = 292 Score = 41.9 bits (97), Expect = 0.059, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 21/191 (10%) Query: 11 HFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHK 66 F A V + + G DEVG G+ G ++V A + N+ F G+ DSKK++ + Sbjct: 63 DFGHIAQVVPQKQTNLIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDE 122 Query: 67 KREEL----YEKITSSAIISISSASHQYIDKHN---------IHKATLDAIYHAVENLQV 113 K ++ ++I A++ + ++ I ++A + Sbjct: 123 KICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPEN 182 Query: 114 IPRSALIDGRSIPED----LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 I A + + V A ++ + ++R + K Sbjct: 183 IVIDAFTTEANYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSK 242 Query: 170 DYGFDSHVGYP 180 + GF G Sbjct: 243 ESGFTLPSGAG 253 >gi|332295295|ref|YP_004437218.1| ribonuclease HII/HIII [Thermodesulfobium narugense DSM 14796] gi|332178398|gb|AEE14087.1| ribonuclease HII/HIII [Thermodesulfobium narugense DSM 14796] Length = 302 Score = 41.5 bits (96), Expect = 0.063, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 19 REKNMWPVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEK 74 + G DE G+G GP+VVA + + +N GI DSK ++ ++ L + Sbjct: 86 LDDKFDFYIGSDESGKGDYFGPLVVAGVEMTGDNLRSLESSGIKDSKALNEERIFCLESE 145 Query: 75 ITSS 78 I +S Sbjct: 146 IINS 149 >gi|67613277|ref|XP_667290.1| ribonuclease HI large subunit [Cryptosporidium hominis TU502] gi|54658405|gb|EAL37055.1| similar to ribonuclease HI large subunit (RNase HI large subunit) [Cryptosporidium hominis] Length = 144 Score = 41.5 bits (96), Expect = 0.068, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 20/101 (19%) Query: 125 IPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH------------KKYPDYG 172 + K D++ S++ ASI+AKV RD + K +Y Sbjct: 1 MNIFPGIDITVKPKADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISNY- 59 Query: 173 FDSHVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLRNL 207 + GY K ++ ++ G I R ++ + Sbjct: 60 -EQGSGYPGDPKTKEFLRRVFDPVFGFPNIVRFSWSTASEI 99 >gi|116513211|ref|YP_812118.1| ribonuclease HIII [Lactococcus lactis subsp. cremoris SK11] gi|123125205|sp|Q02VL7|RNH3_LACLS RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|116108865|gb|ABJ74005.1| Ribonuclease HIII [Lactococcus lactis subsp. cremoris SK11] Length = 292 Score = 41.1 bits (95), Expect = 0.094, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKIT 76 K + G DEVG G+ G ++V A + N++ F G+ DSKK++ +K ++ K+ Sbjct: 73 KKQTNLIGTDEVGNGSYFGGLMVTASFVSDNHLKFLKEMGVADSKKLTDEKICQIAPKLI 132 Query: 77 SSAIISISSASHQYIDK 93 + ++ Sbjct: 133 EEIPHVALVVEPEKYNE 149 >gi|87306587|ref|ZP_01088734.1| hypothetical protein DSM3645_09647 [Blastopirellula marina DSM 3645] gi|87290766|gb|EAQ82653.1| hypothetical protein DSM3645_09647 [Blastopirellula marina DSM 3645] Length = 318 Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 18/34 (52%) Query: 23 MWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG 56 M + G+DE G G GP+V+AA + + G Sbjct: 1 MTWLIGVDEAGYGPNLGPLVIAATVWKAPDSLSG 34 >gi|307103270|gb|EFN51532.1| hypothetical protein CHLNCDRAFT_140248 [Chlorella variabilis] Length = 259 Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 58/198 (29%), Gaps = 38/198 (19%) Query: 41 VVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSAIISISSASH----QYID 92 +V + G DSK ++ +KR+ L+ I + + A Sbjct: 1 MVYGLAWAPISRRKDLKAMGFADSKTLTEEKRDHLFGVIQAEGGMLGYQADVLSAAFISG 60 Query: 93 KHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASII 152 K + +I R Q K DS ++AASI+ Sbjct: 61 KMLGRERVSLNALAFESTCALIEAVLARGERLSQRFPGVQFVVEAKADSTYPIVSAASIV 120 Query: 153 AKVTRDRLMRIA--------------------HKKYPDYGFDSHVGYP----TAKHQQV- 187 AKVTRDR +R +G GYP T + + Sbjct: 121 AKVTRDRTLRDFVLGEMAASLDGGSSSSDGCAAALSTQFG----SGYPADPQTKRWLEAS 176 Query: 188 IKE-KGPSCIHRLTFRPL 204 I G + R ++ Sbjct: 177 INRVFGFPSLVRFSWSTC 194 >gi|164655636|ref|XP_001728947.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966] gi|159102835|gb|EDP41733.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966] Length = 269 Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 31/117 (26%) Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIA-------HKKYPDYG--- 172 + P + K D+ + AASI AKVTRD + +P+ Sbjct: 51 QYFPRHSHIEWIVARKADATYPIVGAASIAAKVTRDACVDHWMYAEPLQSVHHPEISKSS 110 Query: 173 ---------------FDSHVGY-PTAKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 + + GY K + +KE G + + R ++ +++ Sbjct: 111 GKRKRGNNDDEETDIWATGSGYPGDPKTVRYLKETLDPVFGWARLVRFSWATAKSML 167 >gi|300175421|emb|CBK20732.2| unnamed protein product [Blastocystis hominis] Length = 174 Score = 40.0 bits (92), Expect = 0.21, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 12/97 (12%) Query: 123 RSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD-----YGFDSHV 177 + K DS+ ++AASI+AK RD ++ + P G Sbjct: 39 NQTFNFTNIKFKVAPKADSLYKCVSAASIVAKTHRDAIIEQHPWEEPCMQDRLIG-KLGS 97 Query: 178 GYPT-AKHQQVIKE-----KGPSCIHRLTFRPLRNLS 208 GYP+ Q ++ G R ++ + Sbjct: 98 GYPSDPMTVQFLESVMDPVFGFPTFIRFSWSTASRML 134 >gi|228477139|ref|ZP_04061777.1| ribonuclease hiii [Streptococcus salivarius SK126] gi|228251158|gb|EEK10329.1| ribonuclease hiii [Streptococcus salivarius SK126] Length = 289 Score = 39.6 bits (91), Expect = 0.24, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 67/197 (34%), Gaps = 29/197 (14%) Query: 12 FELEAMVREKNMWP-VAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHK 66 ++ E+ + G DEVG G+ G + VVA+++ ++ G++DSK ++ Sbjct: 60 YQAESKHSPDGQNLALIGSDEVGNGSYFGGLAVVASLVTPADHAFLRSLGVDDSKNLNDV 119 Query: 67 KREELYEKITSSAIISISSASHQYIDKHN---------------IHKATLDAIYHAVENL 111 K ++ + S + ++ ++A + + Sbjct: 120 KIRQIAPILEEKIPHKALLLSPRKYNEVVGDGKSHNAVSVKVALHNQAIFLLLQTGAKPD 179 Query: 112 QVIPRSALIDGRSIPE------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAH 165 +++ + + K + L++A +SIIA R+ + Sbjct: 180 KIVIDAFTSEKNYQKYLKNERNRFDFPITLEEKAEGKYLAVAVSSIIA---RNLFLENLD 236 Query: 166 KKYPDYGFDSHVGYPTA 182 K + G+ G Sbjct: 237 KLSQEVGYTLPSGAGAK 253 >gi|195977476|ref|YP_002122720.1| ribonuclease HIII [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974181|gb|ACG61707.1| ribonuclease HIII [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 291 Score = 39.6 bits (91), Expect = 0.26, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 55/178 (30%), Gaps = 22/178 (12%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + ++ G++DSK +S ++ + Sbjct: 74 PLIGSDEVGNGSYFGGIAVVASFVRPEDHALLRQLGVDDSKNLSDMSIVQIAPVLKKHIQ 133 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + +++ + Sbjct: 134 HRALLLSPKKYNEMVGKGKPYNAVSVKVALHNQAIFLLLNDGARPEKIVIDAFTSQANYD 193 Query: 126 PEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + A ++ + + R + K D G+ G Sbjct: 194 KYLQQEKNHFRNPLTFEEKAEGKYLAVAVSSIIARQLFLDNLDKLSQDLGYRLPSGAG 251 >gi|168704572|ref|ZP_02736849.1| hypothetical protein GobsU_33859 [Gemmata obscuriglobus UQM 2246] Length = 313 Score = 39.6 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 8/122 (6%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILD-PNNIPFGINDSKKISHKKREELYEKITSSAIISI 83 V GIDE G G GP+V AAI L P + P G + K + + E+ ++ + Sbjct: 3 WVVGIDEAGYGPNLGPLVQAAIALRLPESDPAGWDTLKSVVRRAHEKPDGRVLIDDSKKV 62 Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 + + + + +A GD + Sbjct: 63 -------YTRGGLEALERGVWAISGAEPARVHDYLWHGDELPLWGEHLRAEFWFDGDDLL 115 Query: 144 LS 145 Sbjct: 116 PF 117 >gi|262167731|ref|ZP_06035433.1| hypothetical protein VIJ_000901 [Vibrio cholerae RC27] gi|262023796|gb|EEY42495.1| hypothetical protein VIJ_000901 [Vibrio cholerae RC27] Length = 43 Score = 39.2 bits (90), Expect = 0.31, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 6 IPERPHFELEAMVREKNMWPVAGIDEVGRGALAG 39 + ++P EL +AG+DEVGRG G Sbjct: 1 MAKKPSIELPPFEIPAGYALIAGVDEVGRGPTGG 34 >gi|116628458|ref|YP_821077.1| ribonuclease HIII [Streptococcus thermophilus LMD-9] gi|122266947|sp|Q03IU1|RNH3_STRTD RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|116101735|gb|ABJ66881.1| Ribonuclease HIII [Streptococcus thermophilus LMD-9] gi|312279078|gb|ADQ63735.1| Ribonuclease HIII [Streptococcus thermophilus ND03] Length = 296 Score = 39.2 bits (90), Expect = 0.35, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 63/181 (34%), Gaps = 28/181 (15%) Query: 27 AGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + VVA+++ ++ G++DSK ++ K ++ + Sbjct: 83 IGSDEVGNGSYFGGLAVVASLVTPADHAFLKSLGVDDSKNLNDSKIRQIAPLLEEKIPHK 142 Query: 83 ISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 S + ++ ++A + + +++ + + + Sbjct: 143 ALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFISEKNYQKY 202 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA R+ + K + G+ G Sbjct: 203 LKNERNHFEFPITLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVGYTLPSGAGA 259 Query: 182 A 182 Sbjct: 260 K 260 >gi|55823657|ref|YP_142098.1| ribonuclease HIII [Streptococcus thermophilus CNRZ1066] gi|73917859|sp|Q5LY37|RNH3_STRT1 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|55739642|gb|AAV63283.1| ribonuclease HIII [Streptococcus thermophilus CNRZ1066] Length = 296 Score = 39.2 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 64/181 (35%), Gaps = 28/181 (15%) Query: 27 AGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + VVA+++ ++ G++DSK ++ K ++ + Sbjct: 83 IGSDEVGNGSYFGGLAVVASLVTPADHAFLKSLGVDDSKNLNDSKIRQIAPLLEEKIPHK 142 Query: 83 ISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 S + ++ ++A + + +++ + + + Sbjct: 143 ALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFISEKNYQKY 202 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA R+ ++ K + G+ G Sbjct: 203 LKNERNHFEFPITLEEKAEGKYLAVAVSSIIA---RNLFLKNLDKLSQEVGYTLPSGAGA 259 Query: 182 A 182 Sbjct: 260 K 260 >gi|55821737|ref|YP_140179.1| ribonuclease HIII [Streptococcus thermophilus LMG 18311] gi|73917860|sp|Q5M2P2|RNH3_STRT2 RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|55737722|gb|AAV61364.1| ribonuclease HIII [Streptococcus thermophilus LMG 18311] Length = 296 Score = 39.2 bits (90), Expect = 0.37, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 64/181 (35%), Gaps = 28/181 (15%) Query: 27 AGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + VVA+++ ++ G++DSK ++ K ++ + Sbjct: 83 IGSDEVGNGSYFGGLAVVASLVTPADHAFLKSLGVDDSKNLNDSKIRQIAPLLEEKIPHK 142 Query: 83 ISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 S + ++ ++A + + +++ + + + Sbjct: 143 ALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFISEKNYQKY 202 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA R+ ++ K + G+ G Sbjct: 203 FKNERNHFEFPITLEEKAEGKYLAVAVSSIIA---RNLFLKNLDKLSQEVGYTLPSGAGA 259 Query: 182 A 182 Sbjct: 260 K 260 >gi|329115714|ref|ZP_08244431.1| ribonuclease HIII [Streptococcus parauberis NCFD 2020] gi|326906119|gb|EGE53033.1| ribonuclease HIII [Streptococcus parauberis NCFD 2020] Length = 299 Score = 38.8 bits (89), Expect = 0.44, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 59/176 (33%), Gaps = 22/176 (12%) Query: 27 AGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + VVA+++ ++ G++DSK ++ K + + + Sbjct: 83 IGSDEVGNGSYFGGIAVVASLVTPEDHTYLKELGVDDSKNLTDPKIRHIAPLLEARIPHK 142 Query: 83 ISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 S + ++ ++A + V+ +++ + Sbjct: 143 ALLLSPKKYNQMVGPDKPYNAVSVKVALHNQAIFLLLQEGVKADKIVIDAFTSQANYQKH 202 Query: 128 DLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + + A ++ + + R+ + + + G+ G Sbjct: 203 LKREKNQFTNVLTFQEKAESDFLAVAVSSIIARNLFLENLKELGAELGYQLPSGAG 258 >gi|322516016|ref|ZP_08068954.1| ribonuclease HIII [Streptococcus vestibularis ATCC 49124] gi|322125551|gb|EFX96892.1| ribonuclease HIII [Streptococcus vestibularis ATCC 49124] Length = 296 Score = 38.8 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 62/181 (34%), Gaps = 28/181 (15%) Query: 27 AGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + VVA+++ ++ G++DSK ++ K ++ + Sbjct: 83 IGSDEVGNGSYFGGLAVVASLVTPADHAFLKALGVDDSKNLNDTKIRQIAPLLEEKIPHK 142 Query: 83 ISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 S + ++ ++A + + +++ + + Sbjct: 143 ALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFTSEKNYQKY 202 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA R+ + K + G+ G Sbjct: 203 LKNERNRFDFPITLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVGYTLPSGAGA 259 Query: 182 A 182 Sbjct: 260 K 260 >gi|312863715|ref|ZP_07723953.1| ribonuclease HIII [Streptococcus vestibularis F0396] gi|311101251|gb|EFQ59456.1| ribonuclease HIII [Streptococcus vestibularis F0396] Length = 289 Score = 38.8 bits (89), Expect = 0.49, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 62/181 (34%), Gaps = 28/181 (15%) Query: 27 AGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + VVA+++ ++ G++DSK ++ K ++ + Sbjct: 76 IGSDEVGNGSYFGGLAVVASLVTPADHAFLKALGVDDSKNLNDTKIRQIAPLLEEKIPHK 135 Query: 83 ISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 S + ++ ++A + + +++ + + Sbjct: 136 ALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFTSEKNYQKY 195 Query: 128 ------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPT 181 K + L++A +SIIA R+ + K + G+ G Sbjct: 196 LKNERNRFDFPITLEEKAEGKYLAVAVSSIIA---RNLFLENLDKLSQEVGYTLPSGAGA 252 Query: 182 A 182 Sbjct: 253 K 253 >gi|237734797|ref|ZP_04565278.1| ribonuclease HIII [Mollicutes bacterium D7] gi|229382125|gb|EEO32216.1| ribonuclease HIII [Coprobacillus sp. D7] Length = 262 Score = 38.4 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 15/31 (48%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGI 57 G DE G G GP+ V A +D + + + Sbjct: 52 IGCDETGSGDFFGPLCVVACYVDERDFDWLV 82 >gi|167755828|ref|ZP_02427955.1| hypothetical protein CLORAM_01344 [Clostridium ramosum DSM 1402] gi|167704767|gb|EDS19346.1| hypothetical protein CLORAM_01344 [Clostridium ramosum DSM 1402] Length = 260 Score = 38.4 bits (88), Expect = 0.54, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 15/31 (48%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNIPFGI 57 G DE G G GP+ V A +D + + + Sbjct: 50 IGCDETGSGDFFGPLCVVACYVDERDFDWLV 80 >gi|13398331|gb|AAK21850.1| RNaseHII [Magnetospirillum magnetotacticum] Length = 23 Score = 38.4 bits (88), Expect = 0.66, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 4/26 (15%) Query: 10 PHFELEAMVREKNMWPVAGIDEVGRG 35 P LE+ + V GIDEVGRG Sbjct: 2 PDLALESEIG----GIVCGIDEVGRG 23 >gi|240047780|ref|YP_002961168.1| Ribonuclease [Mycoplasma conjunctivae HRC/581] gi|239985352|emb|CAT05365.1| Ribonuclease [Mycoplasma conjunctivae] Length = 239 Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILDPNNIPFG----INDSKKISHKKREELYEKITSSA 79 + G DEVG G + V + ++ I DSK ++ KK EE+Y ++ Sbjct: 12 DYIVGCDEVGVGEYFTNLTVCCALFKQEDLDTNLLNSIVDSKLLNEKKIEEIYRQLEEKI 71 Query: 80 IISISSASHQYIDK 93 I + S + Sbjct: 72 IFEVISLDMDKYND 85 >gi|290579795|ref|YP_003484187.1| putative ribonuclease [Streptococcus mutans NN2025] gi|254996694|dbj|BAH87295.1| putative ribonuclease [Streptococcus mutans NN2025] Length = 303 Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 53/176 (30%), Gaps = 22/176 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + V A + + G++DSK ++ K +++ + + Sbjct: 88 IGSDEVGNGSYFGGLAVVASFVKQADHAFLKELGVDDSKNLTDVKIKQIAPLLEAKLPHK 147 Query: 83 ISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 S Q ++ ++A + + +++ + Sbjct: 148 ALLLSPQKYNEVVGDNKLHNAVSVKVALHNQAIFLLLQEGWQPDKIVIDAFTSPKNYQKY 207 Query: 128 DLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + A ++ + + R + + GF+ G Sbjct: 208 LKNENNRFSNPLTLEERAEGKYLAVAVSSIIARKLFLDNLDELSQKVGFNLPSGAG 263 >gi|24380229|ref|NP_722184.1| ribonuclease HIII [Streptococcus mutans UA159] gi|81450775|sp|Q8DSC8|RNH3_STRMU RecName: Full=Ribonuclease HIII; Short=RNase HIII gi|24378237|gb|AAN59490.1|AE015013_9 putative ribonuclease [Streptococcus mutans UA159] Length = 303 Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 53/176 (30%), Gaps = 22/176 (12%) Query: 27 AGIDEVGRGALAGPVVVAAIILDPNNI----PFGINDSKKISHKKREELYEKITSSAIIS 82 G DEVG G+ G + V A + + G++DSK ++ K +++ + + Sbjct: 88 IGSDEVGNGSYFGGLAVVASFVKQADHAFLKELGVDDSKNLTDVKIKQIAPLLEAKLPHK 147 Query: 83 ISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSIPE 127 S Q ++ ++A + + +++ + Sbjct: 148 ALLLSPQKYNEVVGDNKLHNAVSVKVALHNQAIFLLLQEGWQPDKIVIDAFTSPKNYQKY 207 Query: 128 DLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + A ++ + + R + + GF+ G Sbjct: 208 LKNENNRFSNPLTLEERAEGKYLAVAVSSIIARKLFLDNLDELSQKVGFNLPSGAG 263 >gi|225869839|ref|YP_002745786.1| ribonuclease HIII [Streptococcus equi subsp. equi 4047] gi|225699243|emb|CAW92545.1| ribonuclease HIII [Streptococcus equi subsp. equi 4047] Length = 319 Score = 38.1 bits (87), Expect = 0.82, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 55/178 (30%), Gaps = 22/178 (12%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + + G++DSK ++ K ++ + Sbjct: 102 PLIGSDEVGNGSYFGGIAVVASFVQPEEHALLRQLGVDDSKNLNDKSIAQIAPVLKKHIQ 161 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + +++ + Sbjct: 162 HRALLLSPKKYNEMVGKGKPYNAVSVKVALHNQAIFLLLNDGARPEKIVIDAFTSQANYD 221 Query: 126 PEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + A ++ + + R + K D G+ G Sbjct: 222 KYLQQEKNHFRNPLTFEEKAEGKYLAVAVSSIIARQLFLDNLDKLSQDLGYRLPSGAG 279 >gi|225869207|ref|YP_002745155.1| ribonuclease HIII [Streptococcus equi subsp. zooepidemicus] gi|225702483|emb|CAX00396.1| ribonuclease HIII [Streptococcus equi subsp. zooepidemicus] Length = 319 Score = 38.1 bits (87), Expect = 0.85, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 55/178 (30%), Gaps = 22/178 (12%) Query: 25 PVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREELYEKITSSAI 80 P+ G DEVG G+ G + VVA+ + + G++DSK ++ K ++ + Sbjct: 102 PLIGSDEVGNGSYFGGIAVVASFVRPEEHALLRQLGVDDSKNLNDKSIAQIAPVLKKHIQ 161 Query: 81 ISISSASHQYIDKHN---------------IHKATLDAIYHAVENLQVIPRSALIDGRSI 125 S + ++ ++A + +++ + Sbjct: 162 HRALLLSPKKYNEMVGKGKPYNAVSVKVALHNQAIFLLLNDGARPEKIVIDAFTSQANYD 221 Query: 126 PEDLPCQAFAVIKGDSISLSIA---AASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 + + A ++ + + R + K D G+ G Sbjct: 222 KYLQQEKNHFRNPLTFEEKAEGKYLAVAVSSIIARQLFLDNLDKLSQDLGYRLPSGAG 279 >gi|117530304|ref|YP_851147.1| hypothetical protein MaLMM01_gp133 [Microcystis phage Ma-LMM01] gi|117165916|dbj|BAF36224.1| hypothetical protein [Microcystis phage Ma-LMM01] Length = 166 Score = 37.7 bits (86), Expect = 0.92, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 3/116 (2%) Query: 84 SSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSIS 143 Y+ ++ + + I +Q ++ D Sbjct: 14 CMIYPYYVGRYADGRYSAITITLRSGWVQEWRMYRRAIEYLCEDNESPPIITGYLPDMGR 73 Query: 144 LSIAAASII---AKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKHQQVIKEKGPSCI 196 AA + + + I H++YP G H G T +H + + + Sbjct: 74 PRSGAAWYCLDTTEYLHNYNLNIYHERYPTLGILDHRGIATPQHIEALAQLEFLPY 129 >gi|330723906|gb|AEC46276.1| Ribonuclease HII [Mycoplasma hyorhinis MCLD] Length = 240 Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 11/153 (7%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKIT 76 K V G DEVG G + V + +++ + DSK ++ K E LY ++ Sbjct: 8 KPNSYVVGCDEVGVGEYFTNLTVCCALFKESDLESQLLEQTKDSKALTALKLENLYNQLI 67 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 + + + L ++ I ++ A+ Sbjct: 68 EKIKFQVIVLEMEKYN-------YLIEQGFNSHVIKTILYLKILKQLKKEHFSTTPPQAI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 I +SL + ++ + + KKYP Sbjct: 121 IIDGFVSLETFESYLLQIYQKLNIKHWNLKKYP 153 >gi|149178610|ref|ZP_01857196.1| hypothetical protein PM8797T_07342 [Planctomyces maris DSM 8797] gi|148842536|gb|EDL56913.1| hypothetical protein PM8797T_07342 [Planctomyces maris DSM 8797] Length = 320 Score = 37.7 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 23 MWPVAGIDEVGRGALAGPVVVAA 45 M + G+DE G G GP+V+ A Sbjct: 1 MGLIIGMDEAGYGPNLGPLVITA 23 >gi|162456281|ref|YP_001618648.1| hypothetical protein sce7998 [Sorangium cellulosum 'So ce 56'] gi|161166863|emb|CAN98168.1| hypothetical protein predicted by Glimmer/Critica [Sorangium cellulosum 'So ce 56'] Length = 340 Score = 37.7 bits (86), Expect = 1.1, Method: Composition-based stats. Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 27 AGIDEVGRGALAGPVVVAAI 46 G+DE G G GP+VV A+ Sbjct: 12 IGVDENGLGPRLGPMVVTAV 31 >gi|304373232|ref|YP_003856441.1| Ribonuclease HII [Mycoplasma hyorhinis HUB-1] gi|304309423|gb|ADM21903.1| Ribonuclease HII [Mycoplasma hyorhinis HUB-1] Length = 240 Score = 36.9 bits (84), Expect = 1.6, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 11/153 (7%) Query: 21 KNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGI----NDSKKISHKKREELYEKIT 76 K V G DEVG G + V + +++ + DSK ++ K E LY ++ Sbjct: 8 KPNSYVVGCDEVGVGEYFTNLTVCCTLFKESDLESQLLEQTKDSKALTALKLENLYNQLI 67 Query: 77 SSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAV 136 + + + L ++ I ++ A+ Sbjct: 68 EKIKFQVIVLEMEKYN-------YLIEQGFNSHVIKTILYLKILKQLKKEHFSTTPPQAI 120 Query: 137 IKGDSISLSIAAASIIAKVTRDRLMRIAHKKYP 169 I +SL + ++ + + KKYP Sbjct: 121 IIDGFVSLETFESYLLQIYQKLNIKHWNLKKYP 153 >gi|312601539|gb|ADQ90794.1| ribonuclease HII [Mycoplasma hyopneumoniae 168] Length = 246 Score = 36.9 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 4/76 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA 79 V G DEVG G + V + N + I DSK ++ KK +L++ I Sbjct: 11 DLVIGCDEVGVGEYFTNLTVCCAVFREKEIKNELLIQIVDSKLLTEKKISDLFQVINIDQ 70 Query: 80 IISISSASHQYIDKHN 95 I S + + + Sbjct: 71 KIKHKFTSLEMNEYNK 86 >gi|144227713|gb|AAZ44677.2| ribonuclease HII [Mycoplasma hyopneumoniae J] gi|144575542|gb|AAZ53956.2| ribonuclease HII [Mycoplasma hyopneumoniae 7448] Length = 248 Score = 36.9 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 4/76 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA 79 V G DEVG G + V + N + I DSK ++ KK +L++ I Sbjct: 13 DLVIGCDEVGVGEYFTNLTVCCAVFREKEIKNELLIQIVDSKLLTEKKISDLFQVINIDQ 72 Query: 80 IISISSASHQYIDKHN 95 I S + + + Sbjct: 73 KIKHKFTSLEMNEYNK 88 >gi|45356867|gb|AAS58472.1| ATP binding protein [Mycoplasma hyopneumoniae] Length = 1182 Score = 36.9 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 4/76 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA 79 V G DEVG G + V + N + I DSK ++ KK +L++ I Sbjct: 1075 DLVIGCDEVGVGEYFTNLTVCCAVFREKEIKNELLIQIVDSKLLTEKKISDLFQVINIDQ 1134 Query: 80 IISISSASHQYIDKHN 95 I S + + + Sbjct: 1135 KIKHKFTSLEMNEYNK 1150 >gi|71893942|ref|YP_279388.1| ribonuclease HII [Mycoplasma hyopneumoniae J] gi|72080921|ref|YP_287979.1| ribonuclease HII [Mycoplasma hyopneumoniae 7448] Length = 247 Score = 36.9 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 4/76 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA 79 V G DEVG G + V + N + I DSK ++ KK +L++ I Sbjct: 12 DLVIGCDEVGVGEYFTNLTVCCAVFREKEIKNELLIQIVDSKLLTEKKISDLFQVINIDQ 71 Query: 80 IISISSASHQYIDKHN 95 I S + + + Sbjct: 72 KIKHKFTSLEMNEYNK 87 >gi|255710295|gb|ACU30967.1| ribonuclease HI [Ochlerotatus triseriatus] Length = 235 Score = 36.9 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 6/113 (5%) Query: 97 HKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVT 156 +KA + A + + + + K DS ++AASI AKV+ Sbjct: 61 NKAIDAGVNIAEVYVDTVGPPEKYQAKLKQLFPKFKITVAKKADSTYPIVSAASICAKVS 120 Query: 157 RDRLMRIAHKKYP-DYGFDSHVGYP----TAKHQQVIKE-KGPSCIHRLTFRP 203 RD +++ + + G + GYP T + G + R ++ Sbjct: 121 RDHALKVWTFREGLEEGINFGSGYPGDPTTKNFLGTYELVFGYPRLVRFSWST 173 >gi|327490667|gb|EGF22448.1| ribonuclease HIII [Streptococcus sanguinis SK1058] Length = 166 Score = 36.5 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 19 REKNMWPVAGIDEVGRGALAGPV-VVAAIILDPNN---IPFGINDSKKISHKKREE 70 +N + G DEVG G+ G + VVA+ + + G+ DSK ++ K + Sbjct: 77 ASQNFALI-GTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLNDSKIRQ 131 >gi|124504849|ref|XP_001351167.1| N2227-like protein, putative [Plasmodium falciparum 3D7] gi|3649764|emb|CAB11113.1| N2227-like protein, putative [Plasmodium falciparum 3D7] Length = 955 Score = 36.5 bits (83), Expect = 2.1, Method: Composition-based stats. Identities = 10/111 (9%), Positives = 22/111 (19%), Gaps = 2/111 (1%) Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + + + D H + H + + + D Sbjct: 392 NHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHSDNHCD 451 Query: 129 LPCQAFAVIKGDSISLSIAAASII--AKVTRDRLMRIAHKKYPDYGFDSHV 177 C D+ + + D + D D+H Sbjct: 452 NHCDNHCDNHCDNHCDNHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHS 502 Score = 35.7 bits (81), Expect = 3.9, Method: Composition-based stats. Identities = 7/100 (7%), Positives = 17/100 (17%), Gaps = 2/100 (2%) Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + + + D H + H + + + D Sbjct: 376 NHSDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCD 435 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKY 168 C D+ + D + Sbjct: 436 NHCDNHCDNHSDNHCDNHCDNHCD--NHCDNHCDNHCDNH 473 Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats. Identities = 10/111 (9%), Positives = 22/111 (19%), Gaps = 2/111 (1%) Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + + + D H + H + + + D Sbjct: 380 NHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCD 439 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKV--TRDRLMRIAHKKYPDYGFDSHV 177 C + D+ + D + D D+H Sbjct: 440 NHCDNHSDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHSDNHCDNHCDNHS 490 Score = 35.0 bits (79), Expect = 6.5, Method: Composition-based stats. Identities = 9/111 (8%), Positives = 23/111 (20%), Gaps = 2/111 (1%) Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + + + D H+ + H+ + + + D Sbjct: 464 NHCDNHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHCDNHCDNHCD 523 Query: 129 LPCQAFAVIKGDSISLSIAAASIIAKV--TRDRLMRIAHKKYPDYGFDSHV 177 C D+ + D + D D++ Sbjct: 524 NHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNNK 574 Score = 35.0 bits (79), Expect = 6.6, Method: Composition-based stats. Identities = 8/102 (7%), Positives = 20/102 (19%), Gaps = 2/102 (1%) Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + + + S + D H + H + + + D Sbjct: 360 NHCDNHCDNHSDNHCDNHSDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCD 419 Query: 129 LPCQAFAVIKGDSISLSIAAASII--AKVTRDRLMRIAHKKY 168 C D+ + + D + Sbjct: 420 NHCDNHCDNHCDNHCDNHCDNHCDNHSDNHCDNHCDNHCDNH 461 Score = 34.6 bits (78), Expect = 7.9, Method: Composition-based stats. Identities = 8/102 (7%), Positives = 19/102 (18%), Gaps = 2/102 (1%) Query: 69 EELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPED 128 + + + D H + H + + + D Sbjct: 404 NHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHCDNHSDNHCDNHCDNHCDNHCD 463 Query: 129 LPCQAFAVIKGDSISLSIAAASII--AKVTRDRLMRIAHKKY 168 C D+ S + + D + Sbjct: 464 NHCDNHCDNHCDNHSDNHCDNHCDNHSDNHCDNHCDNHSDNH 505 >gi|54020259|ref|YP_116121.1| ribonuclease HII [Mycoplasma hyopneumoniae 232] gi|53987432|gb|AAV27633.1| ribonuclease HII [Mycoplasma hyopneumoniae 232] Length = 248 Score = 36.5 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 24 WPVAGIDEVGRGALAGPVVVAAIILD----PNNIPFGINDSKKISHKKREELYEKITSSA 79 V G DEVG G + V + N + I DSK ++ KK +L++ I + Sbjct: 13 DLVIGCDEVGVGEYFTNLTVCCAVFREKEIENELLIQIVDSKLLTEKKISDLFQVINTDQ 72 Query: 80 IISISSASHQYIDKHN 95 I S + + + Sbjct: 73 KIKHKFTSLEMNEYNK 88 >gi|156062014|ref|XP_001596929.1| hypothetical protein SS1G_01121 [Sclerotinia sclerotiorum 1980] gi|154696459|gb|EDN96197.1| hypothetical protein SS1G_01121 [Sclerotinia sclerotiorum 1980 UF-70] Length = 332 Score = 36.1 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 15/124 (12%) Query: 75 ITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAF 134 + + +S + ++K V+ A + + Sbjct: 100 FQNKSWSEVSGIAVAELNKMEHAWLEDIDWKLYVDLDNSSAYQAWLANWKQWAADRKKVK 159 Query: 135 AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPD-----------YG---FDSHVGYP 180 A + A I V+R R ++ YP Y + +H YP Sbjct: 160 AATMERLSAPPAPLAPIDTSVSRSRQSNSIYRGYPQSATQERQQYVHYEHPAWANHS-YP 218 Query: 181 TAKH 184 T +H Sbjct: 219 TPQH 222 >gi|255660204|ref|ZP_05405613.1| hypothetical protein MgenG_01327 [Mycoplasma genitalium G37] gi|166078775|gb|ABY79393.1| ribonuclease HIII [synthetic Mycoplasma genitalium JCVI-1.0] Length = 235 Score = 36.1 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITSSAI 80 + G DE G+G G + V+A++++ + + DSKK+S + L + I ++ + Sbjct: 10 YLIGSDESGKGDSFGGICVSAVLIEKKQLINLENLQVTDSKKLSDHTVKLLAKSIQTTVM 69 Query: 81 ISI 83 Sbjct: 70 DHH 72 >gi|332261163|ref|XP_003279645.1| PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 1-like [Nomascus leucogenys] Length = 1234 Score = 35.7 bits (81), Expect = 3.5, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 163 IAHKKYPDYG--FDSHVG--YP-TAKHQQVIKEKGPSCIHRLTFRPLRNL 207 H + +Y + + G Y TA HQ + + IHR + + L Sbjct: 402 KMHVLHLEYNSLIEVNSGSLYGLTALHQLHLSNNSIARIHRKGWSFCQKL 451 >gi|78061715|ref|YP_371623.1| cell wall biosynthesis glycosyltransferase-like protein [Burkholderia sp. 383] gi|77969600|gb|ABB10979.1| Glycosyltransferases probably involved in cell wall biogenesis-like protein [Burkholderia sp. 383] Length = 886 Score = 35.7 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 13/149 (8%), Positives = 37/149 (24%), Gaps = 17/149 (11%) Query: 64 SHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGR 123 S K + + I + + + + I Sbjct: 46 SGSKIVFHILALCWFVALGIFWRWWLRDEHYVDAFRFGVNCFVLFWTTFIPGYFIFIIRS 105 Query: 124 SIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---DSHVGYP 180 ++ + + + + + R L+ + + YP + + P Sbjct: 106 AVVPNPALPVPRDWRVAMVVTKAPSEPFD--IVRTTLLAMLDQTYPHDTWLADED----P 159 Query: 181 TAKHQQVIKEK--------GPSCIHRLTF 201 + + +E G + HR ++ Sbjct: 160 SPETLDWCREHGVFVSTRRGIAAYHRTSW 188 >gi|156551549|ref|XP_001600929.1| PREDICTED: hypothetical protein [Nasonia vitripennis] Length = 1068 Score = 35.7 bits (81), Expect = 3.7, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 3/145 (2%) Query: 40 PV--VVAAIILDPNNIPFGINDSKKISHKKREELYEKITSSAIISISSASHQYIDKHNIH 97 PV V AA+ LD +++ +I K + + AI I + K+ Sbjct: 782 PVTTVSAALSLDSEIFYGTLDNKSRIRETK-KRFHPTSDHLAIAWIYNQWLDINRKNGSQ 840 Query: 98 KATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTR 157 A + + + ++ + D V + ++ +I+ ++ R Sbjct: 841 NAYQFSRRNGLHAERMNILHKVRDINLEHLRESGMIVNVQEASDLNCEENQFAILDELVR 900 Query: 158 DRLMRIAHKKYPDYGFDSHVGYPTA 182 L+ + F+ G T Sbjct: 901 GILLSGMDQILKHRNFEIRKGRFTK 925 >gi|169350173|ref|ZP_02867111.1| hypothetical protein CLOSPI_00917 [Clostridium spiroforme DSM 1552] gi|169292956|gb|EDS75089.1| hypothetical protein CLOSPI_00917 [Clostridium spiroforme DSM 1552] Length = 259 Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 47/145 (32%), Gaps = 13/145 (8%) Query: 21 KNMWPV--AGIDEVGRGALAGPVVVAAIILDPNNIPFGI---------NDSKKISHKKRE 69 N + G DE G GP+ V A +D +I + + D ++ RE Sbjct: 40 NNYQKISHIGCDETGSADFFGPLCVVACYVDERDIDWLVSLNIRDPKEMDVHELVRIARE 99 Query: 70 ELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDL 129 I +++ + ++ + + K + A + A + V+ + + + Sbjct: 100 IKDRLIY--SLLLLDNSHYNAMVKAGNNLANIKAKLYNQAVTNVMQKVGMPVKNKLINQF 157 Query: 130 PCQAFAVIKGDSISLSIAAASIIAK 154 + + + + K Sbjct: 158 VSPKTYYNYLKHEVIVVKDLTFVQK 182 >gi|13507857|ref|NP_109806.1| similarity with ribonuclease HII [Mycoplasma pneumoniae M129] gi|13959724|sp|P75446|Y118_MYCPN RecName: Full=Uncharacterized protein MG199 homolog gi|11379450|gb|AAG34735.1|AE000004_4 ribonuclease HII-like protein [Mycoplasma pneumoniae M129] gi|301633315|gb|ADK86869.1| ribonuclease HII [Mycoplasma pneumoniae FH] Length = 236 Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 25 PVAGIDEVGRGALAGPVVVAAIILDPNN----IPFGINDSKKISHKKREELYEKITSSAI 80 + G DE G+G G + V+A+++ + G+ DSK+ + + + L KI ++ Sbjct: 10 YLIGSDESGKGDSFGGIAVSAVLIHKDKINTLHQIGVGDSKQFNDYQIKALVPKIKAAVH 69 Query: 81 ISIS-SASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLPCQAFAVIKG 139 ++ S + ++ ++ + + + D+ FA +K Sbjct: 70 DQVTLSVDAKTYNQLVQSFKNVNVMLTFLHCKVYHQLLQQNKLTAQQCDISIDEFANVKL 129 >gi|325521998|gb|EGD00685.1| UDP-forming cellulose synthase [Burkholderia sp. TJI49] Length = 880 Score = 34.6 bits (78), Expect = 8.9, Method: Composition-based stats. Identities = 14/142 (9%), Positives = 40/142 (28%), Gaps = 15/142 (10%) Query: 71 LYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALIDGRSIPEDLP 130 +++ + +++ ++ + A + V I Sbjct: 45 IFQILALCWFVALGIFWRWWLRDEHYVDAFRFGVNGFVLFWTTFIPGYFIFIIRSAVVPN 104 Query: 131 CQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF---DSHVGYPTAKHQQV 187 + + A S + R L+ + + YP + + PT + + Sbjct: 105 PEVAVPRDWRVAMVVTKAPSEPFAIVRTTLLAMLDQTYPHDTWLADED----PTPETLEW 160 Query: 188 IKEK--------GPSCIHRLTF 201 ++ G + HR ++ Sbjct: 161 CRQHGVRVSTRRGVADYHRTSW 182 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.311 0.140 0.464 Lambda K H 0.267 0.0429 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,086,530,469 Number of Sequences: 14124377 Number of extensions: 108047089 Number of successful extensions: 236923 Number of sequences better than 10.0: 3123 Number of HSP's better than 10.0 without gapping: 2945 Number of HSP's successfully gapped in prelim test: 178 Number of HSP's that attempted gapping in prelim test: 230926 Number of HSP's gapped (non-prelim): 3374 length of query: 209 length of database: 4,842,793,630 effective HSP length: 133 effective length of query: 76 effective length of database: 2,964,251,489 effective search space: 225283113164 effective search space used: 225283113164 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 78 (34.6 bits)