RPSBLAST alignment for GI: 254781076 and conserved domain: TIGR00716

>gnl|CDD|129799 TIGR00716, rnhC, ribonuclease HIII. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other. The only RNase H homolog in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This model describes bacterial RNase III. Length = 284
 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 29/200 (14%)

Query: 26  VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---S 78
           V G DE G+G + GP+V+  + +   N          DSK++S K+ E L   +     +
Sbjct: 83  VIGCDESGKGDIFGPLVLCCVYIPEENYLKVSSLNPRDSKRLSDKRIERLALNLKPLVKA 142

Query: 79  AIISISSASHQYIDKHNIHKATLDAIYHA--VENLQVIP---RSALIDGRSIPEDLPCQA 133
               +    +  + +   +   + A +H   +E L          ++D  +         
Sbjct: 143 YCYELKPEKYNKLYRKFRNLNKMMAHFHKLLIERLLKEECGVSEVVVDQFAPSNPFFNHL 202

Query: 134 FA--VIKGDSI-------SLSIAAASIIAK----VTRDRLMRIAHKKYPDYGFDSHVGYP 180
               ++  D I       +L++AAASI A+     +   L R    K P  G    V   
Sbjct: 203 KGRDIVGEDVIFETEAERNLAVAAASIFARYKFLQSLKELERELGIKLPK-GASKEVKEL 261

Query: 181 TAKHQQVIKEKGPSCIHRLT 200
                 +I +KGPS + R  
Sbjct: 262 AKS---LILKKGPSALERFI 278