RPSBLAST alignment for GI: 254781076 and conserved domain: TIGR00716
>gnl|CDD|129799 TIGR00716, rnhC, ribonuclease HIII. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other. The only RNase H homolog in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This model describes bacterial RNase III. Length = 284
Score = 44.9 bits (106), Expect = 1e-05
Identities = 43/200 (21%), Positives = 75/200 (37%), Gaps = 29/200 (14%)
Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIP----FGINDSKKISHKKREELYEKITS---S 78
V G DE G+G + GP+V+ + + N DSK++S K+ E L + +
Sbjct: 83 VIGCDESGKGDIFGPLVLCCVYIPEENYLKVSSLNPRDSKRLSDKRIERLALNLKPLVKA 142
Query: 79 AIISISSASHQYIDKHNIHKATLDAIYHA--VENLQVIP---RSALIDGRSIPEDLPCQA 133
+ + + + + + A +H +E L ++D +
Sbjct: 143 YCYELKPEKYNKLYRKFRNLNKMMAHFHKLLIERLLKEECGVSEVVVDQFAPSNPFFNHL 202
Query: 134 FA--VIKGDSI-------SLSIAAASIIAK----VTRDRLMRIAHKKYPDYGFDSHVGYP 180
++ D I +L++AAASI A+ + L R K P G V
Sbjct: 203 KGRDIVGEDVIFETEAERNLAVAAASIFARYKFLQSLKELERELGIKLPK-GASKEVKEL 261
Query: 181 TAKHQQVIKEKGPSCIHRLT 200
+I +KGPS + R
Sbjct: 262 AKS---LILKKGPSALERFI 278