RPSBLAST alignment of GI: 254781076 and MMDB domain: 1i39_A_1-182
>1i39_A (A:1-182) Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus}Length = 182
Score = 175 bits (444), Expect = 5e-45
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 13/177 (7%)
Query: 9 RPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHK 66
H + + + AGIDE G+G + GP+VVA + + G+ DSKK+S
Sbjct: 5 HHHHHHSSGLVPRGSHMKAGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQG 64
Query: 67 KREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVEN--LQVIPRSALIDGRS 124
+REEL E+I + S + +D+ K + + L++ P A +D
Sbjct: 65 RREELAEEIRKICRTEVLKVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPD 124
Query: 125 IPED---------LPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYG 172
+ + + A K D +AAASIIAKV R+R + +K+ D+G
Sbjct: 125 VIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFG 181