RPSBLAST alignment of GI: 254781076 and protein with PDBid: 1eke
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} SCOP: c.55.3.1 Length = 230
Score = 175 bits (446), Expect = 5e-45
Identities = 50/216 (23%), Positives = 82/216 (37%), Gaps = 34/216 (15%)
Query: 26 VAGIDEVGRGALAGPVVVAAIILDPNNIPF----GINDSKKISHKKREELYEKITSSAII 81
+ GIDE GRG + GP+VV A ++ G+ DSK+++ KR L + + + +
Sbjct: 3 IIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENLGYV 62
Query: 82 SISSASHQYID----KHNIHKATLDAIYHAVENL------QVIPRSALIDGRSIPE---- 127
+ I+ N++ ++A +NL + ID S
Sbjct: 63 EKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFE 122
Query: 128 --------------DLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGF 173
+L + A K D+ ++AASIIAK RD ++ K Y D G
Sbjct: 123 DSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDIGS 182
Query: 174 DSHVGYPTAKH--QQVIKEKGPSCIHRLTFRPLRNL 207
T K K K I R ++ + +
Sbjct: 183 GYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRI 218