RPSBLAST alignment of GI: 254781076 and protein with PDBid: 1i39
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A Length = 225
Score = 151 bits (383), Expect = 9e-38
Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 14/202 (6%)
Query: 20 EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITS 77
+ AGIDE G+G + GP+VVA + + G+ DSKK+S +REEL E+I
Sbjct: 16 PRGSHMKAGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRK 75
Query: 78 SAIISISSASHQYIDKHNIHKATLDAIY--HAVENLQVIPRSALIDGRSIPEDLPCQAF- 134
+ S + +D+ K + + +A L++ P A +D + + +
Sbjct: 76 ICRTEVLKVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELE 135
Query: 135 --------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-Q 185
A K D +AAASIIAKV R+R + +K+ D+G T + +
Sbjct: 136 EITGLRVVAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFGSGYASDPRTREVLK 195
Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
+ I R+ ++ + NL
Sbjct: 196 EWIASGRIPSCVRMRWKTVSNL 217