RPSBLAST alignment of GI: 254781076 and protein with PDBid: 1i39

>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A Length = 225
 Score =  151 bits (383), Expect = 9e-38
 Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 14/202 (6%)

Query: 20  EKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNI--PFGINDSKKISHKKREELYEKITS 77
            +     AGIDE G+G + GP+VVA +     +     G+ DSKK+S  +REEL E+I  
Sbjct: 16  PRGSHMKAGIDEAGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEIRK 75

Query: 78  SAIISISSASHQYIDKHNIHKATLDAIY--HAVENLQVIPRSALIDGRSIPEDLPCQAF- 134
                +   S + +D+    K   + +   +A   L++ P  A +D   +  +   +   
Sbjct: 76  ICRTEVLKVSPENLDERMAAKTINEILKECYAEIILRLKPEIAYVDSPDVIPERLSRELE 135

Query: 135 --------AVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYPTAKH-Q 185
                   A  K D     +AAASIIAKV R+R +    +K+ D+G        T +  +
Sbjct: 136 EITGLRVVAEHKADEKYPLVAAASIIAKVEREREIERLKEKFGDFGSGYASDPRTREVLK 195

Query: 186 QVIKEKGPSCIHRLTFRPLRNL 207
           + I         R+ ++ + NL
Sbjct: 196 EWIASGRIPSCVRMRWKTVSNL 217