BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus
Liberibacter asiaticus str. psy62]
         (209 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62]
          Length = 209

 Score =  429 bits (1103), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/209 (100%), Positives = 209/209 (100%)

Query: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60
           MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS
Sbjct: 1   MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60

Query: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120
           KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI
Sbjct: 61  KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120

Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180
           DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP
Sbjct: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180

Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209
           TAKHQQVIKEKGPSCIHRLTFRPLRNLSV
Sbjct: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209


>gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 394

 Score = 24.3 bits (51), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 38  AGPVVVAAIILDPNNIPFGI 57
           AG + +  +IL  +NIPFG+
Sbjct: 129 AGLIAILLMILSLDNIPFGV 148


>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 416

 Score = 24.3 bits (51), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166
           ED  C     ++   ++LS+    I   +  DR+MRI  K
Sbjct: 26  EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65


>gi|254780510|ref|YP_003064923.1| hypothetical protein CLIBASIA_01985 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 137

 Score = 23.9 bits (50), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 52 NIPFGINDSKKISHKKREELYEKITSSAIISISSASH 88
          N+ + I++ KKI +  RE+L + I S+A+++ + ASH
Sbjct: 26 NLAYTISERKKI-NILREKLKDSINSTALMNPALASH 61


>537021.9.peg.1064_1 
          Length = 238

 Score = 21.9 bits (45), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 66  KKREELYEKITSSAIISISSASHQYIDKHN--IHKATLDAIYHAVE 109
           + RE+L  K+ +  ++S S A ++ ID+ N  +H   L A+  A +
Sbjct: 168 QDREDLETKLHNQGLVSGSVAWNRAIDETNRKLHDVRLAAMLKASD 213


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.135    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,783
Number of Sequences: 1233
Number of extensions: 5197
Number of successful extensions: 16
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 209
length of database: 328,796
effective HSP length: 70
effective length of query: 139
effective length of database: 242,486
effective search space: 33705554
effective search space used: 33705554
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)