BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62] (209 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781076|ref|YP_003065489.1| ribonuclease HII [Candidatus Liberibacter asiaticus str. psy62] Length = 209 Score = 429 bits (1103), Expect = e-122, Method: Compositional matrix adjust. Identities = 209/209 (100%), Positives = 209/209 (100%) Query: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS Sbjct: 1 MFCNSIPERPHFELEAMVREKNMWPVAGIDEVGRGALAGPVVVAAIILDPNNIPFGINDS 60 Query: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI Sbjct: 61 KKISHKKREELYEKITSSAIISISSASHQYIDKHNIHKATLDAIYHAVENLQVIPRSALI 120 Query: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP Sbjct: 121 DGRSIPEDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHKKYPDYGFDSHVGYP 180 Query: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV Sbjct: 181 TAKHQQVIKEKGPSCIHRLTFRPLRNLSV 209 >gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62] Length = 394 Score = 24.3 bits (51), Expect = 1.8, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 38 AGPVVVAAIILDPNNIPFGI 57 AG + + +IL +NIPFG+ Sbjct: 129 AGLIAILLMILSLDNIPFGV 148 >gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 416 Score = 24.3 bits (51), Expect = 1.9, Method: Compositional matrix adjust. Identities = 12/40 (30%), Positives = 19/40 (47%) Query: 127 EDLPCQAFAVIKGDSISLSIAAASIIAKVTRDRLMRIAHK 166 ED C ++ ++LS+ I + DR+MRI K Sbjct: 26 EDKSCIVGGAVRDSLMNLSVQDIDIATTILPDRVMRIFSK 65 >gi|254780510|ref|YP_003064923.1| hypothetical protein CLIBASIA_01985 [Candidatus Liberibacter asiaticus str. psy62] Length = 137 Score = 23.9 bits (50), Expect = 2.0, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%) Query: 52 NIPFGINDSKKISHKKREELYEKITSSAIISISSASH 88 N+ + I++ KKI + RE+L + I S+A+++ + ASH Sbjct: 26 NLAYTISERKKI-NILREKLKDSINSTALMNPALASH 61 >537021.9.peg.1064_1 Length = 238 Score = 21.9 bits (45), Expect = 9.4, Method: Compositional matrix adjust. Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Query: 66 KKREELYEKITSSAIISISSASHQYIDKHN--IHKATLDAIYHAVE 109 + RE+L K+ + ++S S A ++ ID+ N +H L A+ A + Sbjct: 168 QDREDLETKLHNQGLVSGSVAWNRAIDETNRKLHDVRLAAMLKASD 213 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.135 0.397 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 133,783 Number of Sequences: 1233 Number of extensions: 5197 Number of successful extensions: 16 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 7 length of query: 209 length of database: 328,796 effective HSP length: 70 effective length of query: 139 effective length of database: 242,486 effective search space: 33705554 effective search space used: 33705554 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 36 (18.5 bits)