Query gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 111
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 21:10:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781077.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3ecf_A NTF2-like protein; YP_ 38.2 17 0.00051 17.9 1.8 35 28-62 74-108 (130)
2 >1dsk_A VPR protein; viral pep 35.7 12 0.00036 18.8 0.7 24 72-95 1-28 (28)
3 >1q8h_A Osteocalcin; helix-tur 26.6 17 0.00051 17.9 0.2 13 18-30 7-19 (49)
4 >2g8g_A Capsid; adeno-associat 26.0 21 0.00063 17.4 0.6 25 14-42 8-32 (55)
5 >1s29_A LA protein; winged hel 20.1 17 0.0005 18.0 -0.9 40 55-109 21-60 (92)
6 >2c7h_A RBBP6, retinoblastoma- 15.6 74 0.0022 14.3 1.5 29 29-61 6-34 (86)
7 >2fst_X Mitogen-activated prot 15.2 64 0.0019 14.6 1.1 17 87-103 3-19 (50)
8 >1bde_A VPR protein; AIDS, HIV 15.0 52 0.0015 15.2 0.6 20 71-90 9-32 (33)
9 >1p1j_A Inositol-3-phosphate s 13.7 97 0.0029 13.6 1.7 50 27-80 72-121 (137)
10 >2cqk_A C-MPL binding protein; 12.7 30 0.00088 16.6 -1.2 38 55-109 25-62 (101)
No 1
>>3ecf_A NTF2-like protein; YP_324687.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Anabaena variabilis atcc 29413} (A:)
Probab=38.17 E-value=17 Score=17.94 Aligned_cols=35 Identities=31% Similarity=0.286 Sum_probs=25.0
Q ss_pred CCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCC
Q ss_conf 54300002100000435540033122045610054
Q gi|254781077|r 28 EDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLR 62 (111)
Q Consensus 28 edsslfyhfhstlnlmtlhlplrlqeegisqsnlr 62 (111)
..|++|---...-.+.|+|--.|+.|||||-----
T Consensus 74 rAS~v~q~rTTKG~ly~~~nfF~~DEeGis~iWP~ 108 (130)
T 3ecf_A 74 RASGVWQXRTTKGTLYTLHNFFRLDEEGIVYVWPX 108 (130)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEETTEEEEEECC
T ss_pred CCCCEEEEEECCCEEEEEEEHHEECCCCEEEEEEC
T ss_conf 76531788742634887610113263671899742
No 2
>>1dsk_A VPR protein; viral peptide, polypeptide; NMR {Human immunodeficiency virus type 1} (A:)
Probab=35.71 E-value=12 Score=18.79 Aligned_cols=24 Identities=54% Similarity=0.714 Sum_probs=16.2
Q ss_pred HHHHHHHHHHH----CCCCHHHHHHHHH
Q ss_conf 07789987410----0000455566676
Q gi|254781077|r 72 AITPILQMLDL----TNCRHSRVNQWRQ 95 (111)
Q Consensus 72 aitpilqmldl----tncrhsrvnqwrq 95 (111)
||.-+||-|-. -.|+|||....+|
T Consensus 1 AiiriLQqllfiHFRiGC~HSrIGi~~q 28 (28)
T 1dsk_A 1 AIIRILQQLLFIHFRIGCRHSRIGVTRQ 28 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTGGGSCC
T ss_pred CHHHHHHHHHHHHEECCCCCCCCCCCCC
T ss_conf 9889999998986021563042021469
No 3
>>1q8h_A Osteocalcin; helix-turn-helix-turn-helix, paper-CLIP, hydroxyapatite crystal surface binding protein, calcium binding protein, bone GLA protein; HET: CGU; 2.00A {Sus scrofa} (A:)
Probab=26.57 E-value=17 Score=17.92 Aligned_cols=13 Identities=54% Similarity=0.955 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 6774478876543
Q gi|254781077|r 18 NIPACYPDPLEDS 30 (111)
Q Consensus 18 nipacypdpleds 30 (111)
..||-||||||..
T Consensus 7 ga~ap~pdPlE~~ 19 (49)
T 1q8h_A 7 GAPAPYPDPLXPR 19 (49)
T ss_dssp ------CCTTHHH
T ss_pred CCCCCCCCCCHHH
T ss_conf 8998989952024
No 4
>>2g8g_A Capsid; adeno-associated virus serotype 4, gene therapy, icosahedral virus; HET: D5M; 3.20A {Adeno-associated virus - 4} (A:271-325)
Probab=26.02 E-value=21 Score=17.40 Aligned_cols=25 Identities=48% Similarity=0.582 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 76666774478876543000021000004
Q gi|254781077|r 14 GINYNIPACYPDPLEDSSLFYHFHSTLNL 42 (111)
Q Consensus 14 ginynipacypdpledsslfyhfhstlnl 42 (111)
.-||.|||.-- |+-|-|.-|+|||-
T Consensus 8 ~qnykipa~g~----~sllky~th~tl~g 32 (55)
T 2g8g_A 8 NQNYKIPATGS----DSLIKYETHSTLDG 32 (55)
T ss_dssp GGSCCCCSSST----TCHHHHSCEEEETT
T ss_pred CCCCCCCCCCC----CCCEEEEECCCCCC
T ss_conf 76541234688----75124430243367
No 5
>>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} (A:)
Probab=20.10 E-value=17 Score=17.96 Aligned_cols=40 Identities=15% Similarity=0.319 Sum_probs=27.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEECC
Q ss_conf 4561005410013354007789987410000045556667686543223210004
Q gi|254781077|r 55 GISQSNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRIN 109 (111)
Q Consensus 55 gisqsnlrtdhnvkqhvaitpilqmldltncrhsrvnqwrqisniigykkikrin 109 (111)
-.|.+||+.|.-..+++.- .-++|-.|+.|.+++|||.+.
T Consensus 21 YFSd~NL~~D~fL~~~~~~---------------~~~g~V~i~~i~~F~kik~l~ 60 (92)
T 1s29_A 21 YFSDVNVQRDIFLKGKXAE---------------NAEGFVSLETLLTFKRVNSVT 60 (92)
T ss_dssp HTSHHHHTTCHHHHHHHTT---------------STTCCEEHHHHTTSHHHHTTC
T ss_pred HCCHHHHCCCHHHHHHHHC---------------CCCCCEEHHHHHCCCCHHHHC
T ss_conf 7367441328999999836---------------689869659986784788874
No 6
>>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens} (A:)
Probab=15.55 E-value=74 Score=14.26 Aligned_cols=29 Identities=34% Similarity=0.398 Sum_probs=20.6
Q ss_pred CCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf 430000210000043554003312204561005
Q gi|254781077|r 29 DSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNL 61 (111)
Q Consensus 29 dsslfyhfhstlnlmtlhlplrlqeegisqsnl 61 (111)
-|+.||.|.|..+.-++..+ ..+||-+.|
T Consensus 6 mSsV~YKFkS~k~~~~i~fd----G~~Isv~dL 34 (86)
T 2c7h_A 6 MSCVHYKFSSKLNYDTVTFD----GLHISLCDL 34 (86)
T ss_dssp BEEEEEEETTCSSEEEEEES----SSEEEHHHH
T ss_pred EEEEEEEEECCCCCCEEEEC----CCEEEHHHH
T ss_conf 73799997026875168875----985899999
No 7
>>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 2oza_B 2ewa_A* 1bl6_A* ... (X:231-280)
Probab=15.17 E-value=64 Score=14.64 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 45556667686543223
Q gi|254781077|r 87 HSRVNQWRQISNIIGYK 103 (111)
Q Consensus 87 hsrvnqwrqisniigyk 103 (111)
.+.++||+.|-+++|--
T Consensus 3 ~d~~~Ql~~I~~vlGtP 19 (50)
T 2fst_X 3 TDHIDQLKLILRLVGTP 19 (50)
T ss_dssp SSHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHHHHHCCCC
T ss_conf 99899999999730799
No 8
>>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} (A:)
Probab=14.98 E-value=52 Score=15.17 Aligned_cols=20 Identities=55% Similarity=0.778 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHC----CCCHHHH
Q ss_conf 0077899874100----0004555
Q gi|254781077|r 71 VAITPILQMLDLT----NCRHSRV 90 (111)
Q Consensus 71 vaitpilqmldlt----ncrhsrv 90 (111)
-||..|||-+-.. .|+|||.
T Consensus 9 ~aiiriLQqlLfiHfRiGC~hSRI 32 (33)
T 1bde_A 9 EAIIRILQQLLFIHFRIGCRHSRI 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999999999998625654768
No 9
>>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH, isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces cerevisiae} (A:1-62,A:459-533)
Probab=13.66 E-value=97 Score=13.60 Aligned_cols=50 Identities=28% Similarity=0.374 Sum_probs=38.5
Q ss_pred CCCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 654300002100000435540033122045610054100133540077899874
Q gi|254781077|r 27 LEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQML 80 (111)
Q Consensus 27 ledsslfyhfhstlnlmtlhlplrlqeegisqsnlrtdhnvkqhvaitpilqml 80 (111)
-++.+-|-+|||-|.++..-+---|-..|..-.|- --||.-||.-|+..+
T Consensus 72 ~~~~~~~~~f~sVlSlLSYllKAPlvp~GtpvVNa----L~kQRaaleNilRac 121 (137)
T 1p1j_A 72 KEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNG----LNKQRTALENFLRLL 121 (137)
T ss_dssp BTTCSCCBCCCSBCGGGGGGBSSCCCCTTCCCCCC----HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCH----HHHHHHHHHHHHHHH
T ss_conf 33300014541188898988148899899876414----789999999999998
No 10
>>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=12.69 E-value=30 Score=16.55 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=23.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEECC
Q ss_conf 4561005410013354007789987410000045556667686543223210004
Q gi|254781077|r 55 GISQSNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRIN 109 (111)
Q Consensus 55 gisqsnlrtdhnvkqhvaitpilqmldltncrhsrvnqwrqisniigykkikrin 109 (111)
=.|.+||+.|.-..+++ .-..|--|+.|.++++||.+.
T Consensus 25 YFSd~NL~~D~fLr~~m-----------------~~dg~Vpi~~i~~F~rik~l~ 62 (101)
T 2cqk_A 25 CFSRENLSKDLYLISQM-----------------DSDQFIPIWTVANMEEIKKLT 62 (101)
T ss_dssp HTSHHHHHHCHHHHHHS-----------------CTTSCEEHHHHHHCHHHHHHC
T ss_pred HCCHHHHCCCHHHHHHH-----------------CCCCCEEHHHHHCCHHHHHHC
T ss_conf 75896627298999975-----------------379989669986765899876
Done!