BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62] (111 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62] gi|254040754|gb|ACT57550.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62] Length = 111 Score = 229 bits (585), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 111/111 (100%), Positives = 111/111 (100%) Query: 1 MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60 MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN Sbjct: 1 MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60 Query: 61 LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111 LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG Sbjct: 61 LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111 >gi|323351266|ref|ZP_08086922.1| alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha alpha-1,3-L-rhamnosyltransferase [Streptococcus sanguinis VMC66] gi|322122490|gb|EFX94201.1| alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha alpha-1,3-L-rhamnosyltransferase [Streptococcus sanguinis VMC66] Length = 556 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RTD V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|327463172|gb|EGF09493.1| rhamnosyltransferase [Streptococcus sanguinis SK1] gi|327474781|gb|EGF20186.1| rhamnosyltransferase [Streptococcus sanguinis SK408] Length = 556 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RTD V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|324993910|gb|EGC25829.1| rhamnosyltransferase [Streptococcus sanguinis SK405] gi|324994771|gb|EGC26684.1| rhamnosyltransferase [Streptococcus sanguinis SK678] Length = 556 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RTD V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|327470704|gb|EGF16160.1| rhamnosyltransferase [Streptococcus sanguinis SK330] Length = 556 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RTD V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|328797|gb|AAA80328.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 479 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%) Query: 21 ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79 AC P DP + N+ ++ ++QE+ IS D ++K V +TP+ Sbjct: 32 ACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVIS----LWDQSLKPCVKLTPLCVT 87 Query: 80 LDLTNCRHSRVNQWRQISNIIG 101 LD TN + VN +SNIIG Sbjct: 88 LDCTNANLTNVNNITNVSNIIG 109 >gi|325690859|gb|EGD32860.1| rhamnosyltransferase [Streptococcus sanguinis SK115] Length = 556 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RT+ V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|332362506|gb|EGJ40306.1| rhamnosyltransferase [Streptococcus sanguinis SK1056] Length = 556 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RT+ V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|327461067|gb|EGF07400.1| rhamnosyltransferase [Streptococcus sanguinis SK1057] Length = 556 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RT+ V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 Searching..................................................done Results from round 2 CONVERGED! >gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62] gi|254040754|gb|ACT57550.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62] Length = 111 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 111/111 (100%), Positives = 111/111 (100%) Query: 1 MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60 MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN Sbjct: 1 MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60 Query: 61 LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111 LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG Sbjct: 61 LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111 >gi|328797|gb|AAA80328.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 479 Score = 36.5 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 21 ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79 AC P DP + N+ ++ ++QE+ IS D ++K V +TP+ Sbjct: 32 ACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISL----WDQSLKPCVKLTPLCVT 87 Query: 80 LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110 LD TN + VN +SNIIG + NC Sbjct: 88 LDCTNANLTNVNNITNVSNIIGNITDEVRNC 118 >gi|327470704|gb|EGF16160.1| rhamnosyltransferase [Streptococcus sanguinis SK330] Length = 556 Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RTD V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|327463172|gb|EGF09493.1| rhamnosyltransferase [Streptococcus sanguinis SK1] gi|327474781|gb|EGF20186.1| rhamnosyltransferase [Streptococcus sanguinis SK408] Length = 556 Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RTD V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|324993910|gb|EGC25829.1| rhamnosyltransferase [Streptococcus sanguinis SK405] gi|324994771|gb|EGC26684.1| rhamnosyltransferase [Streptococcus sanguinis SK678] Length = 556 Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RTD V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|323351266|ref|ZP_08086922.1| alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha alpha-1,3-L-rhamnosyltransferase [Streptococcus sanguinis VMC66] gi|322122490|gb|EFX94201.1| alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha alpha-1,3-L-rhamnosyltransferase [Streptococcus sanguinis VMC66] Length = 556 Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RTD V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|327489888|gb|EGF21677.1| rhamnosyltransferase [Streptococcus sanguinis SK1058] Length = 556 Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP L+++ +SQ SN RTD V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLEDKYLSQATSNYRTDQPVLLHIHVTDFPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|332362506|gb|EGJ40306.1| rhamnosyltransferase [Streptococcus sanguinis SK1056] Length = 556 Score = 34.2 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RT+ V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|327461067|gb|EGF07400.1| rhamnosyltransferase [Streptococcus sanguinis SK1057] Length = 556 Score = 34.2 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RT+ V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|325690859|gb|EGD32860.1| rhamnosyltransferase [Streptococcus sanguinis SK115] Length = 556 Score = 34.2 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN RT+ V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|332367199|gb|EGJ44935.1| rhamnosyltransferase [Streptococcus sanguinis SK1059] Length = 556 Score = 34.2 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 11/62 (17%) Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76 + YP L LFYHF LP LQ++ +SQ SN R D V H+ +T PI Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRADQPVLLHIHVTDFPI 297 Query: 77 LQ 78 Q Sbjct: 298 FQ 299 >gi|224103131|ref|XP_002312937.1| f-box family protein [Populus trichocarpa] gi|222849345|gb|EEE86892.1| f-box family protein [Populus trichocarpa] Length = 644 Score = 33.8 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 16/95 (16%) Query: 3 ILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLR 62 ILH S + + ++Y I + L +H S +L +H+ LR NL Sbjct: 335 ILHSCSSLYKLQVSYGIHL--------TDLVFHDISATSLSLIHVSLRW-------CNLL 379 Query: 63 TDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQIS 97 T+H +K V T L++LDL +C+H R IS Sbjct: 380 TNHAIKNLVLNTR-LRVLDLRDCKHFGDEALRAIS 413 >gi|49617701|gb|AAT67546.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 856 Score = 33.8 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%) Query: 21 ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79 AC P DP + N+ ++ ++QE+ IS D ++K V +TP+ Sbjct: 72 ACVPTDPNPQEIHLENVTENFNMWRNNMAEQMQEDVISL----WDQSLKPCVKLTPLCVT 127 Query: 80 LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110 L+ T+ + ++VN SNIIG + NC Sbjct: 128 LNCTDAKLTKVNNTTNASNIIGNITDEVRNC 158 >gi|49617709|gb|AAT67550.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 855 Score = 33.8 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query: 21 ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79 AC P DP + N+ ++ ++QE+ IS D ++K V +TP+ Sbjct: 72 ACVPTDPNPQEIYLENVTENFNMWKNNMVEQMQEDVISL----WDQSLKPCVKLTPLCVT 127 Query: 80 LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110 L+ TN VN +SNIIG + NC Sbjct: 128 LNCTNANLINVNNITNVSNIIGNITDEVRNC 158 >gi|297612312|ref|NP_001068398.2| Os11g0657900 [Oryza sativa Japonica Group] gi|255680331|dbj|BAF28761.2| Os11g0657900 [Oryza sativa Japonica Group] Length = 696 Score = 33.8 bits (76), Expect = 8.8, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 59 SNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111 S LR D ++ + I PIL++LDL NC + + N+ + + R++CG Sbjct: 301 SLLRADVHMTPAITIFPILRVLDLYNCHFEESYHLKHLGNLFHLRYL-RLHCG 352 >gi|125535184|gb|EAY81732.1| hypothetical protein OsI_36905 [Oryza sativa Indica Group] Length = 976 Score = 33.8 bits (76), Expect = 8.8, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 59 SNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111 S LR D ++ + I PIL++LDL NC + + N+ + + R++CG Sbjct: 572 SLLRADVHMTPAITIFPILRVLDLYNCHFEESYHLKHLGNLFHLRYL-RLHCG 623 >gi|77552381|gb|ABA95178.1| NB-ARC domain containing protein [Oryza sativa Japonica Group] gi|125577953|gb|EAZ19175.1| hypothetical protein OsJ_34713 [Oryza sativa Japonica Group] Length = 976 Score = 33.8 bits (76), Expect = 8.8, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 59 SNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111 S LR D ++ + I PIL++LDL NC + + N+ + + R++CG Sbjct: 572 SLLRADVHMTPAITIFPILRVLDLYNCHFEESYHLKHLGNLFHLRYL-RLHCG 623 >gi|6009662|dbj|BAA85017.1| envelope glycoprotein [Human immunodeficiency virus 1] Length = 505 Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query: 21 ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79 AC P DP + N+ ++ ++QE+ IS D ++K V +TP+ Sbjct: 72 ACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISL----WDQSLKPCVKLTPLCVT 127 Query: 80 LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110 L TN + VN +SNIIG + NC Sbjct: 128 LHCTNANLTNVNNITNVSNIIGNITDEVRNC 158 >gi|18844734|dbj|BAB85457.1| Env glycoprotein [Human immunodeficiency virus 1] gi|18844744|dbj|BAB85466.1| Env glycoprotein [Human immunodeficiency virus 1] Length = 857 Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query: 21 ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79 AC P DP + N+ ++ ++QE+ IS D ++K V +TP+ Sbjct: 72 ACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISL----WDQSLKPCVKLTPLCVT 127 Query: 80 LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110 L TN + VN +SNIIG + NC Sbjct: 128 LHCTNANLTNVNNITNVSNIIGNITDEVRNC 158 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.325 0.138 0.428 Lambda K H 0.267 0.0444 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,290,861,195 Number of Sequences: 14124377 Number of extensions: 87878435 Number of successful extensions: 228054 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 48 Number of HSP's that attempted gapping in prelim test: 228042 Number of HSP's gapped (non-prelim): 54 length of query: 111 length of database: 4,842,793,630 effective HSP length: 79 effective length of query: 32 effective length of database: 3,726,967,847 effective search space: 119262971104 effective search space used: 119262971104 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 76 (33.8 bits)