BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781077|ref|YP_003065490.1| hypothetical protein
CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62]
         (111 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040754|gb|ACT57550.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 111

 Score =  229 bits (585), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60
           MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN
Sbjct: 1   MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60

Query: 61  LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111
           LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG
Sbjct: 61  LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111


>gi|323351266|ref|ZP_08086922.1| alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha
           alpha-1,3-L-rhamnosyltransferase [Streptococcus
           sanguinis VMC66]
 gi|322122490|gb|EFX94201.1| alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha
           alpha-1,3-L-rhamnosyltransferase [Streptococcus
           sanguinis VMC66]
          Length = 556

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RTD  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|327463172|gb|EGF09493.1| rhamnosyltransferase [Streptococcus sanguinis SK1]
 gi|327474781|gb|EGF20186.1| rhamnosyltransferase [Streptococcus sanguinis SK408]
          Length = 556

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RTD  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|324993910|gb|EGC25829.1| rhamnosyltransferase [Streptococcus sanguinis SK405]
 gi|324994771|gb|EGC26684.1| rhamnosyltransferase [Streptococcus sanguinis SK678]
          Length = 556

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RTD  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|327470704|gb|EGF16160.1| rhamnosyltransferase [Streptococcus sanguinis SK330]
          Length = 556

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RTD  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|328797|gb|AAA80328.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 479

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 21  ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79
           AC P DP        +     N+   ++  ++QE+ IS      D ++K  V +TP+   
Sbjct: 32  ACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVIS----LWDQSLKPCVKLTPLCVT 87

Query: 80  LDLTNCRHSRVNQWRQISNIIG 101
           LD TN   + VN    +SNIIG
Sbjct: 88  LDCTNANLTNVNNITNVSNIIG 109


>gi|325690859|gb|EGD32860.1| rhamnosyltransferase [Streptococcus sanguinis SK115]
          Length = 556

 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RT+  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|332362506|gb|EGJ40306.1| rhamnosyltransferase [Streptococcus sanguinis SK1056]
          Length = 556

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RT+  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|327461067|gb|EGF07400.1| rhamnosyltransferase [Streptococcus sanguinis SK1057]
          Length = 556

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RT+  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040754|gb|ACT57550.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 111

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60
           MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN
Sbjct: 1   MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60

Query: 61  LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111
           LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG
Sbjct: 61  LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111


>gi|328797|gb|AAA80328.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 479

 Score = 36.5 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 21  ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79
           AC P DP        +     N+   ++  ++QE+ IS      D ++K  V +TP+   
Sbjct: 32  ACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISL----WDQSLKPCVKLTPLCVT 87

Query: 80  LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110
           LD TN   + VN    +SNIIG    +  NC
Sbjct: 88  LDCTNANLTNVNNITNVSNIIGNITDEVRNC 118


>gi|327470704|gb|EGF16160.1| rhamnosyltransferase [Streptococcus sanguinis SK330]
          Length = 556

 Score = 36.2 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RTD  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|327463172|gb|EGF09493.1| rhamnosyltransferase [Streptococcus sanguinis SK1]
 gi|327474781|gb|EGF20186.1| rhamnosyltransferase [Streptococcus sanguinis SK408]
          Length = 556

 Score = 36.2 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RTD  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|324993910|gb|EGC25829.1| rhamnosyltransferase [Streptococcus sanguinis SK405]
 gi|324994771|gb|EGC26684.1| rhamnosyltransferase [Streptococcus sanguinis SK678]
          Length = 556

 Score = 36.2 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RTD  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|323351266|ref|ZP_08086922.1| alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha
           alpha-1,3-L-rhamnosyltransferase [Streptococcus
           sanguinis VMC66]
 gi|322122490|gb|EFX94201.1| alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha
           alpha-1,3-L-rhamnosyltransferase [Streptococcus
           sanguinis VMC66]
          Length = 556

 Score = 36.2 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RTD  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|327489888|gb|EGF21677.1| rhamnosyltransferase [Streptococcus sanguinis SK1058]
          Length = 556

 Score = 34.6 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  L+++ +SQ  SN RTD  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLEDKYLSQATSNYRTDQPVLLHIHVTDFPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|332362506|gb|EGJ40306.1| rhamnosyltransferase [Streptococcus sanguinis SK1056]
          Length = 556

 Score = 34.2 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RT+  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|327461067|gb|EGF07400.1| rhamnosyltransferase [Streptococcus sanguinis SK1057]
          Length = 556

 Score = 34.2 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RT+  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|325690859|gb|EGD32860.1| rhamnosyltransferase [Streptococcus sanguinis SK115]
          Length = 556

 Score = 34.2 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN RT+  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|332367199|gb|EGJ44935.1| rhamnosyltransferase [Streptococcus sanguinis SK1059]
          Length = 556

 Score = 34.2 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 21  ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
           + YP  L    LFYHF          LP  LQ++ +SQ  SN R D  V  H+ +T  PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRADQPVLLHIHVTDFPI 297

Query: 77  LQ 78
            Q
Sbjct: 298 FQ 299


>gi|224103131|ref|XP_002312937.1| f-box family protein [Populus trichocarpa]
 gi|222849345|gb|EEE86892.1| f-box family protein [Populus trichocarpa]
          Length = 644

 Score = 33.8 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 16/95 (16%)

Query: 3   ILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLR 62
           ILH  S +  + ++Y I          + L +H  S  +L  +H+ LR         NL 
Sbjct: 335 ILHSCSSLYKLQVSYGIHL--------TDLVFHDISATSLSLIHVSLRW-------CNLL 379

Query: 63  TDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQIS 97
           T+H +K  V  T  L++LDL +C+H      R IS
Sbjct: 380 TNHAIKNLVLNTR-LRVLDLRDCKHFGDEALRAIS 413


>gi|49617701|gb|AAT67546.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 856

 Score = 33.8 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 21  ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79
           AC P DP        +     N+   ++  ++QE+ IS      D ++K  V +TP+   
Sbjct: 72  ACVPTDPNPQEIHLENVTENFNMWRNNMAEQMQEDVISL----WDQSLKPCVKLTPLCVT 127

Query: 80  LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110
           L+ T+ + ++VN     SNIIG    +  NC
Sbjct: 128 LNCTDAKLTKVNNTTNASNIIGNITDEVRNC 158


>gi|49617709|gb|AAT67550.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 855

 Score = 33.8 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 21  ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79
           AC P DP        +     N+   ++  ++QE+ IS      D ++K  V +TP+   
Sbjct: 72  ACVPTDPNPQEIYLENVTENFNMWKNNMVEQMQEDVISL----WDQSLKPCVKLTPLCVT 127

Query: 80  LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110
           L+ TN     VN    +SNIIG    +  NC
Sbjct: 128 LNCTNANLINVNNITNVSNIIGNITDEVRNC 158


>gi|297612312|ref|NP_001068398.2| Os11g0657900 [Oryza sativa Japonica Group]
 gi|255680331|dbj|BAF28761.2| Os11g0657900 [Oryza sativa Japonica Group]
          Length = 696

 Score = 33.8 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 59  SNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111
           S LR D ++   + I PIL++LDL NC        + + N+   + + R++CG
Sbjct: 301 SLLRADVHMTPAITIFPILRVLDLYNCHFEESYHLKHLGNLFHLRYL-RLHCG 352


>gi|125535184|gb|EAY81732.1| hypothetical protein OsI_36905 [Oryza sativa Indica Group]
          Length = 976

 Score = 33.8 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 59  SNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111
           S LR D ++   + I PIL++LDL NC        + + N+   + + R++CG
Sbjct: 572 SLLRADVHMTPAITIFPILRVLDLYNCHFEESYHLKHLGNLFHLRYL-RLHCG 623


>gi|77552381|gb|ABA95178.1| NB-ARC domain containing protein [Oryza sativa Japonica Group]
 gi|125577953|gb|EAZ19175.1| hypothetical protein OsJ_34713 [Oryza sativa Japonica Group]
          Length = 976

 Score = 33.8 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 59  SNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111
           S LR D ++   + I PIL++LDL NC        + + N+   + + R++CG
Sbjct: 572 SLLRADVHMTPAITIFPILRVLDLYNCHFEESYHLKHLGNLFHLRYL-RLHCG 623


>gi|6009662|dbj|BAA85017.1| envelope glycoprotein [Human immunodeficiency virus 1]
          Length = 505

 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 21  ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79
           AC P DP        +     N+   ++  ++QE+ IS      D ++K  V +TP+   
Sbjct: 72  ACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISL----WDQSLKPCVKLTPLCVT 127

Query: 80  LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110
           L  TN   + VN    +SNIIG    +  NC
Sbjct: 128 LHCTNANLTNVNNITNVSNIIGNITDEVRNC 158


>gi|18844734|dbj|BAB85457.1| Env glycoprotein [Human immunodeficiency virus 1]
 gi|18844744|dbj|BAB85466.1| Env glycoprotein [Human immunodeficiency virus 1]
          Length = 857

 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 21  ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79
           AC P DP        +     N+   ++  ++QE+ IS      D ++K  V +TP+   
Sbjct: 72  ACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISL----WDQSLKPCVKLTPLCVT 127

Query: 80  LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110
           L  TN   + VN    +SNIIG    +  NC
Sbjct: 128 LHCTNANLTNVNNITNVSNIIGNITDEVRNC 158


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.325    0.138    0.428 

Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,290,861,195
Number of Sequences: 14124377
Number of extensions: 87878435
Number of successful extensions: 228054
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 228042
Number of HSP's gapped (non-prelim): 54
length of query: 111
length of database: 4,842,793,630
effective HSP length: 79
effective length of query: 32
effective length of database: 3,726,967,847
effective search space: 119262971104
effective search space used: 119262971104
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.8 bits)