BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781077|ref|YP_003065490.1| hypothetical protein
CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62]
(111 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040754|gb|ACT57550.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 111
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60
MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN
Sbjct: 1 MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60
Query: 61 LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111
LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG
Sbjct: 61 LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111
>gi|328797|gb|AAA80328.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 479
Score = 36.5 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 21 ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79
AC P DP + N+ ++ ++QE+ IS D ++K V +TP+
Sbjct: 32 ACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISL----WDQSLKPCVKLTPLCVT 87
Query: 80 LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110
LD TN + VN +SNIIG + NC
Sbjct: 88 LDCTNANLTNVNNITNVSNIIGNITDEVRNC 118
>gi|327470704|gb|EGF16160.1| rhamnosyltransferase [Streptococcus sanguinis SK330]
Length = 556
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
+ YP L LFYHF LP LQ++ +SQ SN RTD V H+ +T PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297
Query: 77 LQ 78
Q
Sbjct: 298 FQ 299
>gi|327463172|gb|EGF09493.1| rhamnosyltransferase [Streptococcus sanguinis SK1]
gi|327474781|gb|EGF20186.1| rhamnosyltransferase [Streptococcus sanguinis SK408]
Length = 556
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
+ YP L LFYHF LP LQ++ +SQ SN RTD V H+ +T PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297
Query: 77 LQ 78
Q
Sbjct: 298 FQ 299
>gi|324993910|gb|EGC25829.1| rhamnosyltransferase [Streptococcus sanguinis SK405]
gi|324994771|gb|EGC26684.1| rhamnosyltransferase [Streptococcus sanguinis SK678]
Length = 556
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
+ YP L LFYHF LP LQ++ +SQ SN RTD V H+ +T PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297
Query: 77 LQ 78
Q
Sbjct: 298 FQ 299
>gi|323351266|ref|ZP_08086922.1| alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha
alpha-1,3-L-rhamnosyltransferase [Streptococcus
sanguinis VMC66]
gi|322122490|gb|EFX94201.1| alpha-L-Rha alpha-1,2-L-rhamnosyltransferase/alpha-L-Rha
alpha-1,3-L-rhamnosyltransferase [Streptococcus
sanguinis VMC66]
Length = 556
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
+ YP L LFYHF LP LQ++ +SQ SN RTD V H+ +T PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTDQPVLLHIHVTDFPI 297
Query: 77 LQ 78
Q
Sbjct: 298 FQ 299
>gi|327489888|gb|EGF21677.1| rhamnosyltransferase [Streptococcus sanguinis SK1058]
Length = 556
Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
+ YP L LFYHF LP L+++ +SQ SN RTD V H+ +T PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLEDKYLSQATSNYRTDQPVLLHIHVTDFPI 297
Query: 77 LQ 78
Q
Sbjct: 298 FQ 299
>gi|332362506|gb|EGJ40306.1| rhamnosyltransferase [Streptococcus sanguinis SK1056]
Length = 556
Score = 34.2 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
+ YP L LFYHF LP LQ++ +SQ SN RT+ V H+ +T PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297
Query: 77 LQ 78
Q
Sbjct: 298 FQ 299
>gi|327461067|gb|EGF07400.1| rhamnosyltransferase [Streptococcus sanguinis SK1057]
Length = 556
Score = 34.2 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
+ YP L LFYHF LP LQ++ +SQ SN RT+ V H+ +T PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297
Query: 77 LQ 78
Q
Sbjct: 298 FQ 299
>gi|325690859|gb|EGD32860.1| rhamnosyltransferase [Streptococcus sanguinis SK115]
Length = 556
Score = 34.2 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
+ YP L LFYHF LP LQ++ +SQ SN RT+ V H+ +T PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRTNQPVLLHIHVTDLPI 297
Query: 77 LQ 78
Q
Sbjct: 298 FQ 299
>gi|332367199|gb|EGJ44935.1| rhamnosyltransferase [Streptococcus sanguinis SK1059]
Length = 556
Score = 34.2 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 21 ACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQ--SNLRTDHNVKQHVAIT--PI 76
+ YP L LFYHF LP LQ++ +SQ SN R D V H+ +T PI
Sbjct: 245 SSYPTSLIREHLFYHFGPD-------LPCLLQDKYLSQATSNYRADQPVLLHIHVTDFPI 297
Query: 77 LQ 78
Q
Sbjct: 298 FQ 299
>gi|224103131|ref|XP_002312937.1| f-box family protein [Populus trichocarpa]
gi|222849345|gb|EEE86892.1| f-box family protein [Populus trichocarpa]
Length = 644
Score = 33.8 bits (76), Expect = 7.6, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 3 ILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLR 62
ILH S + + ++Y I + L +H S +L +H+ LR NL
Sbjct: 335 ILHSCSSLYKLQVSYGIHL--------TDLVFHDISATSLSLIHVSLRW-------CNLL 379
Query: 63 TDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQIS 97
T+H +K V T L++LDL +C+H R IS
Sbjct: 380 TNHAIKNLVLNTR-LRVLDLRDCKHFGDEALRAIS 413
>gi|49617701|gb|AAT67546.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 856
Score = 33.8 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 21 ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79
AC P DP + N+ ++ ++QE+ IS D ++K V +TP+
Sbjct: 72 ACVPTDPNPQEIHLENVTENFNMWRNNMAEQMQEDVISL----WDQSLKPCVKLTPLCVT 127
Query: 80 LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110
L+ T+ + ++VN SNIIG + NC
Sbjct: 128 LNCTDAKLTKVNNTTNASNIIGNITDEVRNC 158
>gi|49617709|gb|AAT67550.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 855
Score = 33.8 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 21 ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79
AC P DP + N+ ++ ++QE+ IS D ++K V +TP+
Sbjct: 72 ACVPTDPNPQEIYLENVTENFNMWKNNMVEQMQEDVISL----WDQSLKPCVKLTPLCVT 127
Query: 80 LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110
L+ TN VN +SNIIG + NC
Sbjct: 128 LNCTNANLINVNNITNVSNIIGNITDEVRNC 158
>gi|297612312|ref|NP_001068398.2| Os11g0657900 [Oryza sativa Japonica Group]
gi|255680331|dbj|BAF28761.2| Os11g0657900 [Oryza sativa Japonica Group]
Length = 696
Score = 33.8 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 59 SNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111
S LR D ++ + I PIL++LDL NC + + N+ + + R++CG
Sbjct: 301 SLLRADVHMTPAITIFPILRVLDLYNCHFEESYHLKHLGNLFHLRYL-RLHCG 352
>gi|125535184|gb|EAY81732.1| hypothetical protein OsI_36905 [Oryza sativa Indica Group]
Length = 976
Score = 33.8 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 59 SNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111
S LR D ++ + I PIL++LDL NC + + N+ + + R++CG
Sbjct: 572 SLLRADVHMTPAITIFPILRVLDLYNCHFEESYHLKHLGNLFHLRYL-RLHCG 623
>gi|77552381|gb|ABA95178.1| NB-ARC domain containing protein [Oryza sativa Japonica Group]
gi|125577953|gb|EAZ19175.1| hypothetical protein OsJ_34713 [Oryza sativa Japonica Group]
Length = 976
Score = 33.8 bits (76), Expect = 8.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 59 SNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111
S LR D ++ + I PIL++LDL NC + + N+ + + R++CG
Sbjct: 572 SLLRADVHMTPAITIFPILRVLDLYNCHFEESYHLKHLGNLFHLRYL-RLHCG 623
>gi|6009662|dbj|BAA85017.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 505
Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 21 ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79
AC P DP + N+ ++ ++QE+ IS D ++K V +TP+
Sbjct: 72 ACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISL----WDQSLKPCVKLTPLCVT 127
Query: 80 LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110
L TN + VN +SNIIG + NC
Sbjct: 128 LHCTNANLTNVNNITNVSNIIGNITDEVRNC 158
>gi|18844734|dbj|BAB85457.1| Env glycoprotein [Human immunodeficiency virus 1]
gi|18844744|dbj|BAB85466.1| Env glycoprotein [Human immunodeficiency virus 1]
Length = 857
Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 21 ACYP-DPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQM 79
AC P DP + N+ ++ ++QE+ IS D ++K V +TP+
Sbjct: 72 ACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISL----WDQSLKPCVKLTPLCVT 127
Query: 80 LDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110
L TN + VN +SNIIG + NC
Sbjct: 128 LHCTNANLTNVNNITNVSNIIGNITDEVRNC 158
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.325 0.138 0.428
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,286,305,564
Number of Sequences: 14124377
Number of extensions: 53914308
Number of successful extensions: 138364
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 138355
Number of HSP's gapped (non-prelim): 28
length of query: 111
length of database: 4,842,793,630
effective HSP length: 79
effective length of query: 32
effective length of database: 3,726,967,847
effective search space: 119262971104
effective search space used: 119262971104
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.8 bits)