RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781077|ref|YP_003065490.1| hypothetical protein
CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62]
         (111 letters)



>gnl|CDD|33459 COG3661, AguA, Alpha-glucuronidase [Carbohydrate transport and
          metabolism].
          Length = 684

 Score = 31.2 bits (70), Expect = 0.061
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 11 SSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEG 55
            +GI    PA       D  +     +T  +  L LPL+L EEG
Sbjct: 54 GLVGIT---PASASAGARDGVILLASGATPAITGLGLPLKLGEEG 95


>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
           family of GTPases and is localized to the the outer
           membrane of mitochondria. It has a role in mitochondrial
           fusion and in mitochondrial distribution and morphology.
           Mutations in its Drosophila homolog (misato) lead to
           irregular chromosome segregation during mitosis.
           Deletion of the budding yeast homolog DML1 is lethal and
           unregulate expression of DML1 leads to mitochondrial
           dispersion and abnormalities in cell morphology. The
           Misato/DML1 protein family is conserved from yeast to
           human, but its exact function is still unknown..
          Length = 493

 Score = 29.6 bits (67), Expect = 0.18
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 7   LSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLN--LMTLHLPLRLQEEGISQSNLRTD 64
           LS+  ++      P  +P    D+ L YH  + L   L TL LP RL+    S S L  D
Sbjct: 226 LSLSGTLWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSPSSLSGLCDD 285


>gnl|CDD|73318 cd02648, nuc_hydro_1, NH_1: A subgroup of nucleoside hydrolases.
           This group contains fungal proteins similar to
           nucleoside hydrolases. Nucleoside hydrolases cleave the
           N-glycosidic bond in nucleosides generating ribose and
           the respective base. These enzymes vary in their
           substrate specificity.  .
          Length = 367

 Score = 28.1 bits (62), Expect = 0.54
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 18/80 (22%)

Query: 10  ISSMGINYNIPA---------CYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60
           +  MG   ++P          C+ DP   + +     ST       LPL++    I+   
Sbjct: 181 VVVMGGAIDVPGNTSPVAEFNCFADPYAAAVVIDEPPSTAPEARRKLPLQVFPLDIT--- 237

Query: 61  LRTDHNVKQ----HVAITPI 76
             T H +         +TP 
Sbjct: 238 --TGHTLPYSSLFATYVTPR 255


>gnl|CDD|37371 KOG2160, KOG2160, KOG2160, Armadillo/beta-catenin-like
           repeat-containing protein [Posttranslational
           modification, protein turnover, chaperones].
          Length = 342

 Score = 28.0 bits (62), Expect = 0.62
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 56  ISQSNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNII-----GYKKIKRIN 109
             Q+N ++   V +  A++ +L++L   +    R      IS++I     G  +  ++N
Sbjct: 151 AVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLN 209


>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase. 
           (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent
           medium chain alcohol dehydrogenase, catalyzes the
           NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and
           meso-butanediol to acetoin. BDH functions as a
           homodimer.  NAD(P)(H)-dependent oxidoreductases are the
           major enzymes in the interconversion of alcohols and
           aldehydes, or ketones.  The medium chain alcohol
           dehydrogenase family (MDR) have a NAD(P)(H)-binding
           domain in a Rossmann fold of a beta-alpha form. The
           N-terminal region typically has an all-beta catalytic
           domain. These proteins typically form dimers (typically
           higher plants, mammals) or tetramers (yeast, bacteria),
           and have 2 tightly bound zinc atoms per subunit.
           Sorbitol and aldose reductase are NAD(+) binding
           proteins of the polyol pathway, which interconverts
           glucose and fructose. Sorbitol dehydrogenase is
           tetrameric and has a single catalytic zinc per subunit.
          Length = 351

 Score = 25.6 bits (57), Expect = 3.3
 Identities = 6/29 (20%), Positives = 10/29 (34%)

Query: 63  TDHNVKQHVAITPILQMLDLTNCRHSRVN 91
           T   V   V + P ++      C+    N
Sbjct: 84  TGFKVGDRVVVEPTIKCGTCGACKRGLYN 112


>gnl|CDD|39604 KOG4403, KOG4403, KOG4403, Cell surface glycoprotein STIM, contains
           SAM domain [General function prediction only].
          Length = 575

 Score = 25.1 bits (54), Expect = 4.3
 Identities = 6/24 (25%), Positives = 16/24 (66%)

Query: 79  MLDLTNCRHSRVNQWRQISNIIGY 102
           + ++T     R+++W+QI ++ G+
Sbjct: 406 LSEVTTLLRERLHRWQQIESLCGF 429


>gnl|CDD|37158 KOG1947, KOG1947, KOG1947, Leucine rich repeat proteins, some
           proteins contain F-box [General function prediction
           only].
          Length = 482

 Score = 25.1 bits (53), Expect = 4.7
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 27  LEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSNLRTDHNVKQHVAITPILQMLDLTNCR 86
           L    L       L L+ L +  +L+   +S   L TD  +    +  P L+ L L+NC 
Sbjct: 221 LSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280

Query: 87  H 87
           +
Sbjct: 281 N 281


>gnl|CDD|176074 cd08692, C2B_Tac2-N, C2 domain second repeat found in Tac2-N
           (Tandem C2 protein in Nucleus).  Tac2-N contains two C2
           domains and a short C-terminus including a WHXL motif,
           which are key in stabilizing transport vesicles to the
           plasma membrane by binding to a plasma membrane.
           However unlike the usual carboxyl-terminal-type (C-type)
           tandem C2 proteins, it lacks a transmembrane domain, a
           Slp-homology domain, and a Munc13-1-interacting domain.
           Homology search analysis indicate that no known protein
           motifs are located in its N-terminus, making Tac2-N a
           novel class of Ca2+-independent, C-type tandem C2
           proteins. The C2 domain was first identified in PKC. C2
           domains fold into an 8-standed beta-sandwich that can
           adopt 2 structural arrangements: Type I and Type II,
           distinguished by a circular permutation involving their
           N- and C-terminal beta strands. Many C2 domains are
           Ca2+-dependent membrane-targeting modules that bind a
           wide variety of substances including bind phospholipids,
           inositol polyphosphates, and intracellular proteins.
           Most C2 domain proteins are either signal transduction
           enzymes that contain a single C2 domain, such as protein
           kinase C, or membrane trafficking proteins which contain
           at least two C2 domains, such as synaptotagmin 1.
           However, there are a few exceptions to this including
           RIM isoforms and some splice variants of piccolo/aczonin
           and intersectin which only have a single C2 domain.  C2
           domains with a calcium binding region have negatively
           charged residues, primarily aspartates, that serve as
           ligands for calcium ions.
          Length = 135

 Score = 24.5 bits (53), Expect = 6.9
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 15/58 (25%)

Query: 44  TLHLPLRLQEEGI-------SQSNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWR 94
           T+  P+  QE GI       S+S++R  H + Q      +    D ++     V QW+
Sbjct: 70  TMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQ------VWISSDSSSSE--AVEQWK 119


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,345,029
Number of extensions: 58582
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 12
Length of query: 111
Length of database: 6,263,737
Length adjustment: 77
Effective length of query: 34
Effective length of database: 4,599,844
Effective search space: 156394696
Effective search space used: 156394696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)