RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62] (111 letters) >2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae} Length = 312 Score = 25.0 bits (54), Expect = 4.4 Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 2/47 (4%) Query: 46 HLPLRLQE--EGISQSNLRTDHNVKQHVAITPILQMLDLTNCRHSRV 90 PL ++ E IS +++ + + + C+H+ V Sbjct: 195 GSPLSPEQMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANV 241 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.138 0.428 Gapped Lambda K H 0.267 0.0510 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 939,777 Number of extensions: 34009 Number of successful extensions: 92 Number of sequences better than 10.0: 1 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 6 Length of query: 111 Length of database: 5,693,230 Length adjustment: 75 Effective length of query: 36 Effective length of database: 3,874,930 Effective search space: 139497480 Effective search space used: 139497480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.6 bits)