RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781077|ref|YP_003065490.1| hypothetical protein
CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62]
         (111 letters)



>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces
           cerevisiae}
          Length = 312

 Score = 25.0 bits (54), Expect = 4.4
 Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 46  HLPLRLQE--EGISQSNLRTDHNVKQHVAITPILQMLDLTNCRHSRV 90
             PL  ++  E IS         +++       +  + +  C+H+ V
Sbjct: 195 GSPLSPEQMFEDISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANV 241


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 939,777
Number of extensions: 34009
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 6
Length of query: 111
Length of database: 5,693,230
Length adjustment: 75
Effective length of query: 36
Effective length of database: 3,874,930
Effective search space: 139497480
Effective search space used: 139497480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.6 bits)