RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781077|ref|YP_003065490.1| hypothetical protein
CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62]
         (111 letters)



>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain
           {Trypanosoma brucei [TaxId: 5691]}
          Length = 92

 Score = 23.2 bits (50), Expect = 6.3
 Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 15/54 (27%)

Query: 57  SQSNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110
           S  N++ D  +K  +A                    +  +  ++ +K++  +  
Sbjct: 23  SDVNVQRDIFLKGKMAENA---------------EGFVSLETLLTFKRVNSVTT 61


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
           thermophilus [TaxId: 274]}
          Length = 1504

 Score = 22.8 bits (48), Expect = 8.5
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 72  AITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRIN 109
           AI  +L+ LDL       + + +  S     K  KR+ 
Sbjct: 459 AIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLE 496


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0706    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 411,852
Number of extensions: 15185
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 7
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (21.9 bits)