RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62] (111 letters) >d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Length = 92 Score = 23.2 bits (50), Expect = 6.3 Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 15/54 (27%) Query: 57 SQSNLRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINC 110 S N++ D +K +A + + ++ +K++ + Sbjct: 23 SDVNVQRDIFLKGKMAENA---------------EGFVSLETLLTFKRVNSVTT 61 >d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} Length = 1504 Score = 22.8 bits (48), Expect = 8.5 Identities = 10/38 (26%), Positives = 16/38 (42%) Query: 72 AITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRIN 109 AI +L+ LDL + + + S K KR+ Sbjct: 459 AIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLE 496 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.138 0.428 Gapped Lambda K H 0.267 0.0706 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 411,852 Number of extensions: 15185 Number of successful extensions: 41 Number of sequences better than 10.0: 1 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 7 Length of query: 111 Length of database: 2,407,596 Length adjustment: 70 Effective length of query: 41 Effective length of database: 1,446,496 Effective search space: 59306336 Effective search space used: 59306336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 47 (21.9 bits)