BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781077|ref|YP_003065490.1| hypothetical protein
CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62]
         (111 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 111

 Score =  229 bits (585), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60
           MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN
Sbjct: 1   MIILHCLSVISSMGINYNIPACYPDPLEDSSLFYHFHSTLNLMTLHLPLRLQEEGISQSN 60

Query: 61  LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111
           LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG
Sbjct: 61  LRTDHNVKQHVAITPILQMLDLTNCRHSRVNQWRQISNIIGYKKIKRINCG 111


>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 466

 Score = 23.5 bits (49), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 2   IILHCLSVISSMGINYNI 19
           I  HCL ++S  G+N+ +
Sbjct: 217 IAAHCLKIMSKQGMNFQL 234


>gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 21.6 bits (44), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 47  LPLRLQEEGISQSNLRTDHNVKQHVAITPIL 77
           L +R+   GIS S++    NVK    I  IL
Sbjct: 133 LDMRMSCSGISASDVVNQANVKDLTRILGIL 163


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,727
Number of Sequences: 1233
Number of extensions: 2657
Number of successful extensions: 5
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 111
length of database: 328,796
effective HSP length: 63
effective length of query: 48
effective length of database: 251,117
effective search space: 12053616
effective search space used: 12053616
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 32 (16.9 bits)