HHsearch alignment for GI: 254781078 and conserved domain: COG3468
>COG3468 AidA Type V secretory pathway, adhesin AidA [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].
Probab=93.70 E-value=0.23 Score=26.05 Aligned_cols=163 Identities=14% Similarity=0.073 Sum_probs=97.9
Q ss_pred CCCCCEEEECCCCCCEE-------EEEEEEEEEEEEEEEEECCCCCC-CCCCCCCCCCEEEEEEEEEEEEC--CEEEEEE
Q ss_conf 53211033037665300-------00574446441033222145556-66667667550479988655445--7799999
Q gi|254781078|r 38 NEADNNVEYQDDEYGIW-------SGNYVGLHISRLYETHPLADTIN-RKTYNSLLPNGLGIELGHNIQLE--DFVFGIN 107 (242)
Q Consensus 38 ~~~~~~~~~~~~~~~~W-------tG~YiG~~~G~~~~~~~~~d~~~-~~~~n~~~~~g~G~~~GYN~Q~~--~~V~GvE 107 (242)
T Consensus 380 ~~~~~~~~y~~g~~~tw~~~~~~~~g~y~d~~~q~~~f~n~~~~~~~~~~~~~~~~g~~~slE~g~~~~l~~~~~~~~pq 459 (592)
T COG3468 380 LGADKTTGYSLGAYATWYASSAKATGAYLDGWAQYSWFDNGVNSLDNTGADGYLSSGYTASLEGGYRFLLGEASLTLQPQ 459 (592)
T ss_pred CCCCCCCEECCCCEEEEEECCCCCCCEEEEEEHHHEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEECCCCCEEECCE
T ss_conf 44453132435526897504775533366000122131465324455555434553223101035113413350886770
Q ss_pred EEEEEECCCCC----CCCCCCCCEEEEEEEEEEEEEECCE-------------EEEEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 88674047776----4323101003679899986331440-------------344440114575301100023666655
Q gi|254781078|r 108 CHTTAAKDDST----FYRLKEKYFIYGDVVLKAGYSVDSL-------------LIYGMGGFGGAYVIDSSLEKVESDNSK 170 (242)
Q Consensus 108 ~d~~~~~~~~~----~~~~~~k~~~~Gsvr~r~Gya~~~~-------------l~Y~~gG~A~~~~~~~~~~~~~~~~~~ 170 (242)
T Consensus 460 aq~~~~~v~~~~~~~~~~s~v~~~~~~~~~~rlg~~~~~~~~~~~~~~~~~~~~~~~~~n~~~-~~~~~~~--v---~~~ 533 (592)
T COG3468 460 AQLTYQGVTVDDFTDSNGSEVSGDNGDSLQGRLGVALGYVTTVQGLDGLNAEEGPFVLQNWLH-EFGGDTE--V---NVD 533 (592)
T ss_pred EEEEEEECCCCCCEECCCCEEECCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCEEEEEHHH-HCCCCCE--E---EEC
T ss_conf 799997636542220268676157785321112100341011033333344445157530133-3267737--9---965
Q ss_pred CCCCCCCCCCEEEEEEEE-EEEECCCCEEEEEEEEEE
Q ss_conf 554345565303798731-667327876888898887
Q gi|254781078|r 171 NAKGRFDGHGSSVVLGIG-LDYMVNYDISLSASYRYI 206 (242)
Q Consensus 171 ~~~~~~d~t~~G~tvGaG-VEYait~nwslraEY~Y~ 206 (242)
T Consensus 534 ~~~~~~~~~~~~~e~~~g~~~a~~~~~~~~~g~~~~~ 570 (592)
T COG3468 534 GVAEGNDGDRNTAEGGVGGVAAKLNKQTSLGGAAAYQ 570 (592)
T ss_pred CCEEECCCCEEEEECCCCCEEEEECCCCCCHHHHHHH
T ss_conf 7312214410244204554000112130402332233