HHsearch alignment for GI: 254781078 and conserved domain: COG3637
>COG3637 Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=4e-34 Score=205.39 Aligned_cols=191 Identities=18% Similarity=0.244 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 05678888987436520234332025434575321103303766530000574446441033222145556666676675
Q gi|254781078|r 7 GALFFVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYGIWSGNYVGLHISRLYETHPLADTINRKTYNSLLP 86 (242)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~WtG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~ 86 (242)
T Consensus 2 k~~l~~a~~~~~~~~~a~aad~----------------------~~~w~~~~~~g~a~~~~~~~~~~---------~~~~ 50 (199)
T COG3637 2 KKLLAAAALAALLLSAAAAADA----------------------AAGWYGTYSGGYAGSDWSGSDSS---------PSIG 50 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------HCCCCEEEEEEEEECCCCCCCCC---------CCCC
T ss_conf 0699999999987514444444----------------------23870688634884265677644---------3566
Q ss_pred CEEEEE-EEEEEEECCEEEEEEEEEEEECCCCC---CCCCCCC--CEEEEEEEEEEEEEE-CCEEEEEEEEEEEEEEECC
Q ss_conf 504799-88655445779999988674047776---4323101--003679899986331-4403444401145753011
Q gi|254781078|r 87 NGLGIE-LGHNIQLEDFVFGINCHTTAAKDDST---FYRLKEK--YFIYGDVVLKAGYSV-DSLLIYGMGGFGGAYVIDS 159 (242)
Q Consensus 87 ~g~G~~-~GYN~Q~~~~V~GvE~d~~~~~~~~~---~~~~~~k--~~~~Gsvr~r~Gya~-~~~l~Y~~gG~A~~~~~~~ 159 (242)
T Consensus 51 ~~~G~~~~g~n~~~~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~~~~~~~~~~~Y~~aGvg~~~~k~~ 130 (199)
T COG3637 51 FGGGLKLAGYNLKYRYSVLGVEGSFTYTGQSGRYSGGSGKNQVDNKAWYGSLRAGPDYRINDRFSPYGGAGVAYGKVKTS 130 (199)
T ss_pred CCCCEEEEEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCEECCCCEEEEEECCEEEEEEEEE
T ss_conf 54221667687335846788898876102466544766644444205789999865510586444404010576899871
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 00023666655554345565303798731667327876888898887448730003666666442201234138999886
Q gi|254781078|r 160 SLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGIN 239 (242)
Q Consensus 160 ~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~Gin 239 (242)
T Consensus 131 ---~~~~~~~----~~~s~~~~g~~~gAGv~~~~tdnv~vd~~Y~y~~~g~~~--~~----~~-~~~~~~~~~~v~vGv~ 196 (199)
T COG3637 131 ---TDEVGGS----ADESKTKTGYAYGAGVQYNPTDNVAIDLGYEYSDFGKKD--GV----DG-GYSGDVKTHTVKVGVG 196 (199)
T ss_pred ---CCCCCCC----CCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC--CC----CC-CCCCCCCCCEEEEEEE
T ss_conf ---2566741----167655788678410798155987998899988158864--56----75-4136401340899605
Q ss_pred EEC
Q ss_conf 209
Q gi|254781078|r 240 MHF 242 (242)
Q Consensus 240 Y~F 242 (242)
T Consensus 197 YkF 199 (199)
T COG3637 197 YKF 199 (199)
T ss_pred EEC
T ss_conf 659