HHsearch alignment for GI: 254781078 and conserved domain: COG5338
>COG5338 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=95.32 E-value=0.056 Score=29.43 Aligned_cols=78 Identities=10% Similarity=0.207 Sum_probs=41.6
Q ss_pred CCCCCCCCCEEEEEEEEEEEEEECCEE-EEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 643231010036798999863314403-4444011457530110002366665555434556530379873166732787
Q gi|254781078|r 118 TFYRLKEKYFIYGDVVLKAGYSVDSLL-IYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYD 196 (242)
Q Consensus 118 ~~~~~~~k~~~~Gsvr~r~Gya~~~~l-~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~n 196 (242)
T Consensus 253 ttvsqkDRD~n~~s~~~R~gYelSPal~pf~e~~vg----k~~YD~ridt-------~G~eRSs~~Y~~r~G~~~D~gEk 321 (468)
T COG5338 253 TTVSQKDRDRNLASLTGRIGYELSPALIPFAEAEVG----KRDYDTRIDT-------QGYERSSDGYGARVGAEFDLGEK 321 (468)
T ss_pred CCCCHHCCCCCCCEEEEECCEEECCCCCEEEEEECC----CCHHHHHCCC-------CCCCCCCCCCCCCCCEEECHHHH
T ss_conf 723320135440002321112336542202676237----3102110244-------34223444200013246600042
Q ss_pred EEEEEEEEEE
Q ss_conf 6888898887
Q gi|254781078|r 197 ISLSASYRYI 206 (242)
Q Consensus 197 wslraEY~Y~ 206 (242)
T Consensus 322 ~~GE~aiGYm 331 (468)
T COG5338 322 LRGEVAIGYM 331 (468)
T ss_pred HCCCCHHHHH
T ss_conf 1650000011