Query         gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 242
No_of_seqs    152 out of 223
Neff          5.0 
Searched_HMMs 39220
Date          Mon May 30 04:22:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781078.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG3637 Opacity protein and re 100.0   4E-34   1E-38  205.4  18.7  191    7-242     2-199 (199)
  2 pfam01389 OmpA_membrane OmpA-l  99.9 7.1E-23 1.8E-27  143.8  19.1  165   55-242     5-174 (175)
  3 PRK10808 outer membrane protei  99.9 1.1E-21 2.9E-26  137.2  18.4  190    6-242     2-195 (347)
  4 pfam02462 Opacity Opacity fami  99.4   8E-12   2E-16   83.3  11.0  121   94-242     2-126 (126)
  5 pfam02530 Porin_2 Porin subfam  99.3 4.5E-11 1.2E-15   79.2  12.7   88  127-214   246-358 (378)
  6 PRK09408 ompX outer membrane p  99.2   2E-09   5E-14   70.2  16.6  125   90-242    46-171 (171)
  7 PRK10959 outer membrane protei  99.1 4.6E-08 1.2E-12   62.7  17.4  108  131-242   103-212 (212)
  8 pfam06316 Ail_Lom Enterobacter  99.0 4.7E-08 1.2E-12   62.7  15.5  133   90-242    50-199 (199)
  9 pfam03922 OmpW OmpW family. Th  98.9 2.5E-07 6.3E-12   58.7  16.2  104  131-242    84-189 (189)
 10 pfam03349 Toluene_X Outer memb  98.8 2.2E-06 5.7E-11   53.5  19.3   61  182-242   355-415 (415)
 11 COG2067 FadL Long-chain fatty   98.5 6.8E-06 1.7E-10   50.8  13.6  147   85-242   216-391 (440)
 12 PRK10716 long-chain fatty acid  98.5 6.5E-05 1.7E-09   45.5  19.1   53  185-242   385-437 (437)
 13 PRK10716 long-chain fatty acid  98.5 2.2E-05 5.5E-10   48.1  15.2   60  176-242   334-393 (437)
 14 COG3047 OmpW Outer membrane pr  98.4 1.9E-06 4.9E-11   53.9   8.9  109  128-242   103-213 (213)
 15 pfam07437 YfaZ YfaZ precursor.  98.3 8.4E-05 2.2E-09   44.9  15.5  102   85-211    58-160 (180)
 16 pfam03797 Autotransporter Auto  98.3 0.00016 4.2E-09   43.3  15.5  151   54-205    84-258 (265)
 17 pfam05736 OprF OprF membrane d  98.1 7.4E-05 1.9E-09   45.2  11.0  125   86-242    50-180 (184)
 18 COG2067 FadL Long-chain fatty   97.9 0.00082 2.1E-08   39.5  13.9  104  128-242   335-440 (440)
 19 pfam03349 Toluene_X Outer memb  97.8 0.00063 1.6E-08   40.1  11.9  146   86-242   195-366 (415)
 20 smart00869 Autotransporter Aut  97.8   0.002   5E-08   37.4  14.3  153   55-207    79-256 (261)
 21 pfam06629 MipA MltA-interactin  97.5  0.0056 1.4E-07   34.9  18.6  136   90-242    86-226 (226)
 22 cd00342 gram_neg_porins Porins  97.2   0.013 3.3E-07   32.9  15.1   58  182-242   272-329 (329)
 23 pfam12099 DUF3575 Protein of u  96.9   0.024   6E-07   31.5  11.8   38    8-45      7-44  (186)
 24 COG3203 OmpC Outer membrane pr  96.7   0.033 8.4E-07   30.7  13.2   57  178-242   298-354 (354)
 25 smart00869 Autotransporter Aut  96.5   0.047 1.2E-06   29.8  16.9  152   87-241    67-241 (261)
 26 pfam10082 DUF2320 Uncharacteri  96.1   0.084 2.1E-06   28.5  19.1   50  181-242   331-380 (380)
 27 pfam03797 Autotransporter Auto  95.8    0.11 2.9E-06   27.7  18.6  181   57-241    46-245 (265)
 28 PRK09752 adhesin; Provisional   95.7    0.12   3E-06   27.7  14.4  145   55-206  1077-1231(1250)
 29 pfam00267 Porin_1 Gram-negativ  95.7    0.13 3.3E-06   27.5  17.5   49  184-242   286-334 (334)
 30 pfam11854 DUF3374 Protein of u  95.6    0.13 3.4E-06   27.3  13.3   18   10-27      5-23  (675)
 31 pfam05736 OprF OprF membrane d  95.5   0.027   7E-07   31.1   4.9   99    8-113     9-122 (184)
 32 COG5338 Uncharacterized protei  95.3   0.056 1.4E-06   29.4   5.9   78  118-206   253-331 (468)
 33 TIGR01414 autotrans_barl outer  95.1     0.2   5E-06   26.4  12.3  167   55-242   265-454 (454)
 34 pfam05420 BCSC_C Cellulose syn  94.9    0.23   6E-06   26.0  17.3   51  174-242   286-336 (339)
 35 pfam11854 DUF3374 Protein of u  94.8    0.25 6.4E-06   25.9  15.6   58  185-242   612-675 (675)
 36 PRK11447 cellulose synthase su  94.7    0.25 6.4E-06   25.9  15.1   32  175-206  1089-1120(1158)
 37 pfam11383 DUF3187 Protein of u  94.4    0.12 2.9E-06   27.7   5.6   87  132-242   157-243 (273)
 38 PRK12580 outer membrane protea  94.0    0.35   9E-06   25.0   7.4   61  182-242   244-312 (312)
 39 COG3468 AidA Type V secretory   93.7    0.23 5.9E-06   26.1   6.0  163   38-206   380-570 (592)
 40 pfam06082 DUF940 Bacterial put  93.4    0.29 7.4E-06   25.5   6.1   21  185-205   420-440 (661)
 41 pfam01278 Omptin Omptin family  93.3    0.49 1.2E-05   24.3   7.5   60  181-242   226-295 (295)
 42 pfam01617 Surface_Ag_2 Surface  92.7     0.6 1.5E-05   23.8  20.0  110   87-214   101-241 (279)
 43 pfam07585 DUF1551 Protein of u  92.2    0.72 1.8E-05   23.4  11.9  122  121-242   189-338 (338)
 44 COG4625 Uncharacterized protei  91.8    0.79   2E-05   23.1  11.0   46  179-242   532-577 (577)
 45 PRK09980 ompL outer membrane p  91.2    0.93 2.4E-05   22.7  13.3   50  179-242   181-230 (230)
 46 PRK10993 outer membrane protea  91.1    0.94 2.4E-05   22.7  13.1   61  182-242   244-311 (311)
 47 PRK10159 outer membrane phosph  90.7    0.85 2.2E-05   23.0   5.8   47  184-242   305-351 (351)
 48 TIGR03509 OMP_MtrB_PioB decahe  88.8     1.5 3.8E-05   21.6  17.0   59  184-242   584-649 (649)
 49 TIGR03016 pepcterm_hypo_1 unch  88.4     1.6   4E-05   21.5  14.7   50  181-242   382-431 (431)
 50 PRK10002 outer membrane protei  86.5       2   5E-05   21.0   5.3   46  185-242   317-362 (362)
 51 COG3713 OmpV Outer membrane pr  86.2     2.1 5.4E-05   20.8  14.6   96  139-242   159-258 (258)
 52 TIGR03014 EpsL exopolysacchari  85.9     2.2 5.6E-05   20.7  17.1   54  182-241   290-343 (381)
 53 COG4571 OmpT Outer membrane pr  84.0     2.7 6.9E-05   20.2   7.3  150   90-242   136-314 (314)
 54 PRK13484 putative iron-regulat  80.7     3.7 9.3E-05   19.5   6.3   53  190-242   540-593 (682)
 55 pfam09381 Porin_OmpG Outer mem  80.5     3.3 8.3E-05   19.8   4.4   46  184-242   235-280 (280)
 56 PRK13486 bifunctional enteroba  70.8       7 0.00018   18.0   5.9   43  194-242   538-580 (696)
 57 PRK13483 enterobactin receptor  68.1       8  0.0002   17.6   6.1   19  190-208   533-551 (663)
 58 COG5571 Autotransporter protei  65.7     2.1 5.4E-05   20.8   0.5  135   88-242    90-239 (239)
 59 pfam04338 DUF481 Protein of un  65.4     9.1 0.00023   17.3  15.9   49  182-242   162-210 (210)
 60 pfam06727 DUF1207 Protein of u  64.7     9.4 0.00024   17.3   5.2   99  129-242   214-337 (337)
 61 pfam09411 PagL Lipid A 3-O-dea  64.1     9.6 0.00025   17.2  15.3   87  131-239    52-138 (139)
 62 COG4771 FepA Outer membrane re  63.8     9.7 0.00025   17.2   4.0   59  182-242   639-699 (699)
 63 PRK10177 hypothetical protein;  61.0      11 0.00028   16.9   6.7   25  181-205   252-276 (452)
 64 pfam06178 KdgM Oligogalacturon  59.5      12  0.0003   16.7  17.3   51  177-242   168-218 (218)
 65 PRK10554 outer membrane porin   55.2      14 0.00035   16.3  15.8   49  185-242   325-373 (373)
 66 pfam11336 DUF3138 Protein of u  55.0      14 0.00036   16.3   8.6   41  177-217   456-496 (514)
 67 PRK13513 putative outer membra  54.3      14 0.00037   16.2   6.2   18  191-208   532-549 (660)
 68 pfam12094 DUF3570 Protein of u  47.0      19 0.00048   15.6  12.3   29  178-206   258-286 (407)
 69 pfam09982 DUF2219 Uncharacteri  44.7      21 0.00053   15.4  13.7   53   93-152   127-180 (293)
 70 pfam11924 DUF3442 Protein of u  43.9      21 0.00054   15.3  12.8   67  132-207   162-233 (280)
 71 pfam10677 DUF2490 Protein of u  43.8      21 0.00055   15.3   6.3   31  174-208   147-177 (191)
 72 pfam07172 GRP Glycine rich pro  43.1     5.9 0.00015   18.3  -0.3   43    5-53      3-47  (91)
 73 COG2930 Uncharacterized conser  42.3      23 0.00058   15.2   3.0   56   52-109    62-118 (227)
 74 TIGR01778 TonB-copper TonB-dep  40.4      24 0.00062   15.0   2.8   30   88-117   515-545 (668)
 75 PRK11528 hypothetical protein;  39.1      25 0.00065   14.9  11.2   30  179-208   206-235 (254)
 76 pfam04357 DUF490 Family of unk  30.9      35  0.0009   14.1   3.0   15  189-203   319-333 (349)
 77 PRK03761 organic solvent toler  28.4      39 0.00099   13.9   5.6   21  185-205   681-701 (782)
 78 TIGR00459 aspS_bact aspartyl-t  28.0      14 0.00037   16.2  -0.3   20  192-211   126-145 (653)
 79 PRK03641 hypothetical protein;  26.3      43  0.0011   13.7   1.8   30    7-36      2-31  (220)
 80 COG1956 GAF domain-containing   25.2      32 0.00081   14.3   1.0   11   51-61     50-60  (163)
 81 PRK09840 catecholate sideropho  24.4      46  0.0012   13.4   9.3   20  190-209   621-640 (760)
 82 PRK04517 hypothetical protein;  20.4      54  0.0014   13.1   1.4   28    9-36      5-33  (216)

No 1  
>COG3637 Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=4e-34  Score=205.39  Aligned_cols=191  Identities=18%  Similarity=0.244  Sum_probs=143.1

Q ss_pred             CHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             05678888987436520234332025434575321103303766530000574446441033222145556666676675
Q gi|254781078|r    7 GALFFVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYGIWSGNYVGLHISRLYETHPLADTINRKTYNSLLP   86 (242)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~WtG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~   86 (242)
                      |-++.+++++++.-..+.|+|.                      ...|++.|.+++.+..|.+.+..         ...+
T Consensus         2 k~~l~~a~~~~~~~~~a~aad~----------------------~~~w~~~~~~g~a~~~~~~~~~~---------~~~~   50 (199)
T COG3637           2 KKLLAAAALAALLLSAAAAADA----------------------AAGWYGTYSGGYAGSDWSGSDSS---------PSIG   50 (199)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----------------------HCCCCEEEEEEEEECCCCCCCCC---------CCCC
T ss_conf             0699999999987514444444----------------------23870688634884265677644---------3566


Q ss_pred             CEEEEE-EEEEEEECCEEEEEEEEEEEECCCCC---CCCCCCC--CEEEEEEEEEEEEEE-CCEEEEEEEEEEEEEEECC
Q ss_conf             504799-88655445779999988674047776---4323101--003679899986331-4403444401145753011
Q gi|254781078|r   87 NGLGIE-LGHNIQLEDFVFGINCHTTAAKDDST---FYRLKEK--YFIYGDVVLKAGYSV-DSLLIYGMGGFGGAYVIDS  159 (242)
Q Consensus        87 ~g~G~~-~GYN~Q~~~~V~GvE~d~~~~~~~~~---~~~~~~k--~~~~Gsvr~r~Gya~-~~~l~Y~~gG~A~~~~~~~  159 (242)
                      .+.|+| +|||+|+++.|+|+|+++++...+..   ......+  ..|.+++++|.+|++ ++++||+.+|++.++++.+
T Consensus        51 ~~~G~~~~g~n~~~~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~~~~~~~~~~~Y~~aGvg~~~~k~~  130 (199)
T COG3637          51 FGGGLKLAGYNLKYRYSVLGVEGSFTYTGQSGRYSGGSGKNQVDNKAWYGSLRAGPDYRINDRFSPYGGAGVAYGKVKTS  130 (199)
T ss_pred             CCCCEEEEEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCEECCCCEEEEEECCEEEEEEEEE
T ss_conf             54221667687335846788898876102466544766644444205789999865510586444404010576899871


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             00023666655554345565303798731667327876888898887448730003666666442201234138999886
Q gi|254781078|r  160 SLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGIN  239 (242)
Q Consensus       160 ~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~Gin  239 (242)
                         .......    ...++++.||++|||+||++|+||++++||||.|+++++  ..    +. .++.+.+.|++|+||+
T Consensus       131 ---~~~~~~~----~~~s~~~~g~~~gAGv~~~~tdnv~vd~~Y~y~~~g~~~--~~----~~-~~~~~~~~~~v~vGv~  196 (199)
T COG3637         131 ---TDEVGGS----ADESKTKTGYAYGAGVQYNPTDNVAIDLGYEYSDFGKKD--GV----DG-GYSGDVKTHTVKVGVG  196 (199)
T ss_pred             ---CCCCCCC----CCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC--CC----CC-CCCCCCCCCEEEEEEE
T ss_conf             ---2566741----167655788678410798155987998899988158864--56----75-4136401340899605


Q ss_pred             EEC
Q ss_conf             209
Q gi|254781078|r  240 MHF  242 (242)
Q Consensus       240 Y~F  242 (242)
                      |+|
T Consensus       197 YkF  199 (199)
T COG3637         197 YKF  199 (199)
T ss_pred             EEC
T ss_conf             659


No 2  
>pfam01389 OmpA_membrane OmpA-like transmembrane domain. The structure of OmpA transmembrane domain shows that it consists of an eight stranded beta barrel. This family includes some other distantly related outer membrane proteins with low scores.
Probab=99.92  E-value=7.1e-23  Score=143.81  Aligned_cols=165  Identities=18%  Similarity=0.152  Sum_probs=111.3

Q ss_pred             EEEEEEEEEEEEEEEEECCCC-CCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCC-CCCCCCEE-EEE
Q ss_conf             005744464410332221455-566666766755047998865544577999998867404777643-23101003-679
Q gi|254781078|r   55 SGNYVGLHISRLYETHPLADT-INRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFY-RLKEKYFI-YGD  131 (242)
Q Consensus        55 tG~YiG~~~G~~~~~~~~~d~-~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~-~~~~k~~~-~Gs  131 (242)
                      ..||+|+++|.+.-...+... ...++.+   ..++|+++||  ||.++ |++|+.+......+... ....+.+. --+
T Consensus         5 n~~Y~G~~~G~s~~~~~~~~~~~~~~d~~---~~~~glf~GY--qfn~~-~a~E~gY~~lG~~~~~~~~~~~~~~~~~~~   78 (175)
T pfam01389         5 NTWYTGAKAGWASFHDTGLIEGNGPTHRN---SLTAGAFGGY--QINNY-LAAELGYDYLGRMPYKGKGKNNAHKAQGVT   78 (175)
T ss_pred             CCEEEEEEEEEEEECCCCCCCCCCCCCCC---CCEEEEEEEE--ECCCE-EEEEEEEEECCCCCCCCCCCCCCEEEEEEE
T ss_conf             95789664025689576344578765678---7178999863--10311-226874243165433553434540468999


Q ss_pred             EEEEEEEEEC-CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEC-C
Q ss_conf             8999863314-4034444011457530110002366665555434556530379873166732787688889888744-8
Q gi|254781078|r  132 VVLKAGYSVD-SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPH-H  209 (242)
Q Consensus       132 vr~r~Gya~~-~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~-g  209 (242)
                      +.+|..|.+. ++-+|+|+|+++.+.+.+....      .......+.+.+++++|+|+||+|||||++|+||||++. +
T Consensus        79 l~~k~~~pl~d~~~ly~K~G~a~~~~d~~~~~~------~~~~~~~~d~~~~~~~G~G~eY~it~~~~~r~eYq~~~~~g  152 (175)
T pfam01389        79 LSLKLSYPLTDDLDVYGKVGGALVRADYKFYED------ANGKTGNHDTGVSPLFALGVEYAVTPELAVRLEYQYLNNIG  152 (175)
T ss_pred             EEEEEEEEECCCEEEEEEEEEEEEECCCCEECC------CCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEHHCC
T ss_conf             999988861485679997106899613321025------66642235677053888888998075827888899922258


Q ss_pred             CCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             730003666666442201234138999886209
Q gi|254781078|r  210 IHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +.           .....+.|.|.+.+||+|||
T Consensus       153 ~~-----------~~~~~~~D~~~~slGlsYrF  174 (175)
T pfam01389       153 DL-----------HKQGKRPDNGSASLGISYRF  174 (175)
T ss_pred             CC-----------CCCCCCCCCCEEEEEEEEEC
T ss_conf             53-----------35676677777999999777


No 3  
>PRK10808 outer membrane protein A; Reviewed
Probab=99.90  E-value=1.1e-21  Score=137.21  Aligned_cols=190  Identities=14%  Similarity=0.111  Sum_probs=119.5

Q ss_pred             CCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf             20567888898743652023433202543457532110330376653000057444644103322214555666667667
Q gi|254781078|r    6 YGALFFVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYGIWSGNYVGLHISRLYETHPLADTINRKTYNSLL   85 (242)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~WtG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~   85 (242)
                      +|-++.+.++.++..+.|+|+.    +-                     ..||+|+.+|..+-. +.... +.....+-.
T Consensus         2 KKt~ial~va~a~~a~~A~Aa~----~d---------------------n~wY~G~k~G~s~~~-d~~~~-~~~~~~d~~   54 (347)
T PRK10808          2 KKTAIAIAVALAGFATVAQAAP----KD---------------------NTWYTGAKLGWSQYH-DTGFI-NNNGPTHKN   54 (347)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCC----CC---------------------CCEEEEEEEEEEEEC-CCCCC-CCCCCCCCC
T ss_conf             4679999999997776431200----02---------------------887896421100121-33124-667776556


Q ss_pred             CCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCC-CCCCCE-EEEEEEEEEEEEEC-CEEEEEEEEEEEEEEECCCCC
Q ss_conf             550479988655445779999988674047776432-310100-36798999863314-403444401145753011000
Q gi|254781078|r   86 PNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYR-LKEKYF-IYGDVVLKAGYSVD-SLLIYGMGGFGGAYVIDSSLE  162 (242)
Q Consensus        86 ~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~-~~~k~~-~~Gsvr~r~Gya~~-~~l~Y~~gG~A~~~~~~~~~~  162 (242)
                      ..++|+++||  ||.++ |++|..+.+.+.-..... ...+.+ .-.++-++..|.+. ++-+|++.|.++.........
T Consensus        55 ~~g~G~f~GY--qfn~~-~a~E~GYd~lG~~~~~g~~~~~~~~~~g~~La~k~~ypl~d~l~ly~k~G~~y~~~d~~~~~  131 (347)
T PRK10808         55 QLGAGAFGGY--QVNPY-LGFEMGYDWLGRMPYKGDVSNGAFKAQGVQLTAKLGYPITDDLDVYTRLGGMVWRADTKSNV  131 (347)
T ss_pred             CCEEEEEEEE--EECCE-EEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEEEEECCCCCC
T ss_conf             6124567547--72544-88987000028543245444764014678888888104567723257853489971234455


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEC-CCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf             2366665555434556530379873166732787688889888744-873000366666644220123413899988620
Q gi|254781078|r  163 KVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPH-HIHSVNNSNAKSDVERVDRKGNAHIASLGINMH  241 (242)
Q Consensus       163 ~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~-g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~  241 (242)
                            ........+.+...+++|+|+||+|++||++|+||||++- +.           ...+..+.|.|.+.+||+||
T Consensus       132 ------~~~~~~~~~d~g~s~~~g~GveY~lt~~~~~R~eYq~~~~igd-----------~~~~g~~~d~~~~slGlsY~  194 (347)
T PRK10808        132 ------TGGARGKDHDTGVSPVFAGGVEYAITPEWATRLEYQWTNNIGD-----------ANTIGTRPDNGLLSVGVSYR  194 (347)
T ss_pred             ------CCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCC-----------CCCCCCCCCCCEEEEEEEEC
T ss_conf             ------6654323565673620672035880637268888999810575-----------55557467775699999963


Q ss_pred             C
Q ss_conf             9
Q gi|254781078|r  242 F  242 (242)
Q Consensus       242 F  242 (242)
                      |
T Consensus       195 F  195 (347)
T PRK10808        195 F  195 (347)
T ss_pred             C
T ss_conf             7


No 4  
>pfam02462 Opacity Opacity family porin protein. Pathogenic Neisseria spp. possess a repertoire of phase-variable Opacity proteins that mediate various pathogen--host cell interactions. These proteins are integral membrane proteins related to other porins.
Probab=99.37  E-value=8e-12  Score=83.31  Aligned_cols=121  Identities=15%  Similarity=0.168  Sum_probs=83.7

Q ss_pred             EEEEEECCEEEEEEEEEEEE-CCCCCCCCCCCCCEEEEEEEEEEEEEE---CCEEEEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             86554457799999886740-477764323101003679899986331---44034444011457530110002366665
Q gi|254781078|r   94 GHNIQLEDFVFGINCHTTAA-KDDSTFYRLKEKYFIYGDVVLKAGYSV---DSLLIYGMGGFGGAYVIDSSLEKVESDNS  169 (242)
Q Consensus        94 GYN~Q~~~~V~GvE~d~~~~-~~~~~~~~~~~k~~~~Gsvr~r~Gya~---~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~  169 (242)
                      ||  .|++|.+  -+|++.- +.+.....+  |..   |+-.-+=|.|   +++-||+.+++++.+++.+.....     
T Consensus         2 GY--dfg~~R~--A~DY~~y~k~~~~~~~~--~~~---SlglsaiYDFdt~s~~kPYvGarv~~~~~~~~~~~~~-----   67 (126)
T pfam02462         2 GY--RFGNLRF--AVDYTRYGKVKANSTDF--KGY---SLGASVIYDFDTQSPVKPYVGARVSTNGFKVTASAEL-----   67 (126)
T ss_pred             CC--CCCCEEE--EECHHHHCCCCCCCCCE--EEE---EEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCC-----
T ss_conf             61--3587999--82012315213787535--767---6367899971589952142675676122210355535-----


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             5554345565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  170 KNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       170 ~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                       ....+.+.++.||-+.|||.|.|||||+|.++|||...|+-           +  +.+.+.|-+++||.|+|
T Consensus        68 -~~~~s~S~~~~g~gv~AGVgyditpnltLD~GYRY~~~G~l-----------e--~tr~~theas~GvRY~F  126 (126)
T pfam02462        68 -GGSDSFSDTRIGLGVLAGVSYKLTPNVDLDTGYRYNRLGKV-----------T--VTNVRSGEASAGVRYKF  126 (126)
T ss_pred             -CCCCCCCCCEEEEEEEEEEEEECCCCEEEECCEEEEECCCC-----------C--CCEECCCCEEEEEEEEC
T ss_conf             -87556503359998874368832787377125288004641-----------3--43020121368866639


No 5  
>pfam02530 Porin_2 Porin subfamily. This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.
Probab=99.33  E-value=4.5e-11  Score=79.19  Aligned_cols=88  Identities=13%  Similarity=0.110  Sum_probs=60.8

Q ss_pred             EEEEEEEEEEEEEEC-CEEEEEEEEEEEEEEECCCCCC-----------------------CCCCC-CCCCCCCCCCCCE
Q ss_conf             036798999863314-4034444011457530110002-----------------------36666-5555434556530
Q gi|254781078|r  127 FIYGDVVLKAGYSVD-SLLIYGMGGFGGAYVIDSSLEK-----------------------VESDN-SKNAKGRFDGHGS  181 (242)
Q Consensus       127 ~~~Gsvr~r~Gya~~-~~l~Y~~gG~A~~~~~~~~~~~-----------------------~~~~~-~~~~~~~~d~t~~  181 (242)
                      .|.+.+|+|+...++ +..+++.|+++-+-.+......                       ..... .............
T Consensus       246 ~~~~Av~~~~~~~~g~g~s~~l~g~Y~~ga~~Y~~~~~~~~~~~~Wav~~~~~~~~t~k~~~~~~~~~~~~~~~~~~d~~  325 (378)
T pfam02530       246 KEEGAVRARLSVKAGDGDTLNIAGGYASGANRYTGDSEYHNWGGNWAVWAGYTYKATDKTAITPGAQWGGAGNVCNPDFD  325 (378)
T ss_pred             CCCEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECEEEECCCCCCCCCCC
T ss_conf             42504489999986798458999998158742235544434677503776568623330898203375024543477754


Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEE
Q ss_conf             379873166732787688889888744873000
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVN  214 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~  214 (242)
                      .|.+|+.+.|.+.+|+.+++|++|.|++.+...
T Consensus       326 ~~~vg~nv~ytpV~nl~~~~Ev~Yt~~d~k~~g  358 (378)
T pfam02530       326 GWAVGANVDYTIVDNLTFTAEVRYTDLGQKYFG  358 (378)
T ss_pred             EEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC
T ss_conf             268888788788099689789999746874456


No 6  
>PRK09408 ompX outer membrane protein X; Provisional
Probab=99.23  E-value=2e-09  Score=70.22  Aligned_cols=125  Identities=17%  Similarity=0.198  Sum_probs=91.6

Q ss_pred             EEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECC-EEEEEEEEEEEEEEECCCCCCCCCCC
Q ss_conf             79988655445779999988674047776432310100367989998633144-03444401145753011000236666
Q gi|254781078|r   90 GIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDS-LLIYGMGGFGGAYVIDSSLEKVESDN  168 (242)
Q Consensus        90 G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~r~Gya~~~-~l~Y~~gG~A~~~~~~~~~~~~~~~~  168 (242)
                      |+.+-|+|++++-.+|+-+.+++...|...........-+.++.+---|-+++ +=+|+..|++.++++......     
T Consensus        46 G~NlKYrYE~dn~~~Gvi~Sftyt~~d~~~~~~~~~~~~YySl~aGPsyR~NdyvS~Ygl~G~a~~k~~~~~~~~-----  120 (171)
T PRK09408         46 GFNLKYRYEEDNSPLGVIGSFTYTEKSRTADSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPT-----  120 (171)
T ss_pred             CEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCEEEECCEEEEEEECCEEEEEEEECCCCC-----
T ss_conf             448887667369867789999998166566775312046998953442786243752255013368997324676-----


Q ss_pred             CCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             55554345565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  169 SKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       169 ~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                           .+.+...++.+.||||++-..+||++.+.|.+-.+.                  +.+..+..+||.|||
T Consensus       121 -----~~~s~s~t~fayGAGvQ~NP~~nvaid~gYE~S~~~------------------~~~~~~f~vGvGYRF  171 (171)
T PRK09408        121 -----YKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIR------------------SVDVGTWIAGVGYRF  171 (171)
T ss_pred             -----CCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCCC------------------CEEECCEEEEEEECC
T ss_conf             -----445611021466654798067787999876111458------------------727685998114139


No 7  
>PRK10959 outer membrane protein W; Provisional
Probab=99.07  E-value=4.6e-08  Score=62.73  Aligned_cols=108  Identities=13%  Similarity=0.191  Sum_probs=71.5

Q ss_pred             EEEEEEEE-EE-CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEC
Q ss_conf             98999863-31-44034444011457530110002366665555434556530379873166732787688889888744
Q gi|254781078|r  131 DVVLKAGY-SV-DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPH  208 (242)
Q Consensus       131 svr~r~Gy-a~-~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~  208 (242)
                      ++.++-=+ .. .++-||+..|+.|...-+........ .......+. +..+|+.+=+|+||++++||++.+..+|++.
T Consensus       103 tl~~qYhF~~~~~~~rPYVGaGvnYt~F~d~~~~~~~~-~~~~~~l~l-~~S~G~a~q~G~dy~l~~~W~~n~dv~y~~i  180 (212)
T PRK10959        103 TLMAQYYFGDAQSKLRPYVGAGVNYTTFFDNEFNDTGK-DAGLSDLSL-KDSWGAAGQVGLDYLINRDWLVNASVWYMDI  180 (212)
T ss_pred             EEEEEECCCCCCCCEEEEEEEEEEEEEEECCCCCCCCC-CCCCCCEEE-CCCEEEEEEEEEEEEECCCEEEEEEEEEEEC
T ss_conf             99999734899984513576106799997132456555-677451066-2746079998789993798399999999962


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             8730003666666442201234138999886209
Q gi|254781078|r  209 HIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       209 g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .++..-..++  .....+.+.|.-++.+||.|||
T Consensus       181 ~T~a~~~~~~--~~~~~~v~idP~v~~vgvgYrF  212 (212)
T PRK10959        181 DTDVKFKLGG--AQQKISTRLDPWVFMFSAGYRF  212 (212)
T ss_pred             CCEEEEECCC--CEEEEEEEECCEEEEEEEEEEC
T ss_conf             3459996388--4066047708789997759989


No 8  
>pfam06316 Ail_Lom Enterobacterial Ail/Lom protein. This family consists of several bacterial and phage Ail/Lom-like proteins. The Yersinia enterocolitica Ail protein is a known virulence factor. Proteins in this family are predicted to consist of eight transmembrane beta-sheets and four cell surface-exposed loops. It is thought that Ail directly promotes invasion and loop 2 contains an active site, perhaps a receptor-binding domain. The phage protein Lom is expressed during lysogeny, and encode host-cell envelope proteins. Lom is found in the bacterial outer membrane, and is homologous to virulence proteins of two other enterobacterial genera. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.
Probab=99.01  E-value=4.7e-08  Score=62.68  Aligned_cols=133  Identities=13%  Similarity=0.176  Sum_probs=88.2

Q ss_pred             EEEEEEEEEECCEEEEEEEEEEEECCCCCCCCC---------CCCCEEEEEEEEEEEEEECC-EEEEEEEEEEEEEEECC
Q ss_conf             799886554457799999886740477764323---------10100367989998633144-03444401145753011
Q gi|254781078|r   90 GIELGHNIQLEDFVFGINCHTTAAKDDSTFYRL---------KEKYFIYGDVVLKAGYSVDS-LLIYGMGGFGGAYVIDS  159 (242)
Q Consensus        90 G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~---------~~k~~~~Gsvr~r~Gya~~~-~l~Y~~gG~A~~~~~~~  159 (242)
                      |+.+-|+|++++- +|+-+-+++...+......         ..+.+ +.++.+=--|-++. +=+|+..|+|..+++..
T Consensus        50 G~NlKYRYE~d~~-lGvIgSfTy~~~~~~~~~~~~~~~~~~~~~~~~-YySlmaGPsyR~Nd~vS~Ygl~G~a~~k~~~~  127 (199)
T pfam06316        50 GINVKYRYEFTDT-LGLITSFSYANAEDEQKTHYNDTRWHEDSVRNR-WFSVMAGPSVRVNEWFSAYALAGVAYARVSSF  127 (199)
T ss_pred             CEEEEEEEECCCC-EEEEEEEEEECCCCCCCEECCCCCCCCCCCCCE-EEEEEECCCEEECCEEEEEEECCEEEEEEEEC
T ss_conf             5388866441798-078999999615653120205762025642203-89997346268511012012123136776402


Q ss_pred             CCCCCC--C-----CCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEE
Q ss_conf             000236--6-----665555434556530379873166732787688889888744873000366666644220123413
Q gi|254781078|r  160 SLEKVE--S-----DNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAH  232 (242)
Q Consensus       160 ~~~~~~--~-----~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h  232 (242)
                      ......  .     ........+.+...++.+.||||++-..+||++.+-|.+-..                  .+.+.+
T Consensus       128 ~~d~~~~~~~~~~~~~~~~~s~~~s~s~tsfAyGAGvQfNP~~nvaiD~gYEgS~~------------------~d~~~~  189 (199)
T pfam06316       128 AGDYFRLTDDEGKKHDHLTGSDDARRSHTALAWGAGVQFNPTENIAVDLAYEASGR------------------GDWRTD  189 (199)
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCC------------------CCCEEC
T ss_conf             46503312555654555444444544433224420279715766799987763034------------------870517


Q ss_pred             EEEEEEEEEC
Q ss_conf             8999886209
Q gi|254781078|r  233 IASLGINMHF  242 (242)
Q Consensus       233 ~v~~GinY~F  242 (242)
                      ...+||.|||
T Consensus       190 gf~vGVGYRF  199 (199)
T pfam06316       190 AFIVGTGYKF  199 (199)
T ss_pred             CEEEEEEECC
T ss_conf             5899514409


No 9  
>pfam03922 OmpW OmpW family. This family includes outer membrane protein W (OmpW) proteins from a variety of bacterial species. This protein may form the receptor for S4 colicins in E. coli.
Probab=98.91  E-value=2.5e-07  Score=58.73  Aligned_cols=104  Identities=15%  Similarity=0.186  Sum_probs=71.9

Q ss_pred             EEEEEEEE--EECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEC
Q ss_conf             98999863--3144034444011457530110002366665555434556530379873166732787688889888744
Q gi|254781078|r  131 DVVLKAGY--SVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPH  208 (242)
Q Consensus       131 svr~r~Gy--a~~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~  208 (242)
                      ++.++-=+  +-.++-||+..|+.|...-.......     .....+. +..+|+++=+|++|++++||++.+..+|++.
T Consensus        84 tlt~qYhf~~~~~~~rPYVGaGvnYt~f~~~~~~~~-----~~~~~~~-d~s~G~a~q~G~dy~l~~~w~~n~dv~~~~i  157 (189)
T pfam03922        84 TLTAQYHFGDASSGFRPYVGAGVNYTTFFDEKLGST-----GATDLKL-KDSWGAAGQAGVDYMVNDDWLVNMDVWYMFI  157 (189)
T ss_pred             EEEEEEEECCCCCCEEEEEEEEEEEEEEECCCCCCC-----CCCEEEE-CCCEEEEEEEEEEEEECCCEEEEEEEEEEEC
T ss_conf             999999348999965056760168999983445888-----8546897-0654089999889996898399999999962


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             8730003666666442201234138999886209
Q gi|254781078|r  209 HIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       209 g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .++..-....  .....+.+.|.-++.+||.|||
T Consensus       158 ~t~at~~~g~--~~~~~~v~lDP~v~~~gvgyrF  189 (189)
T pfam03922       158 DTTASYKLGG--AKLKTKVKLDPWVFSIGLGYRF  189 (189)
T ss_pred             CCEEEEECCC--CEEEEEEEECCEEEEEEEEEEC
T ss_conf             4569997288--5078579958889998769879


No 10 
>pfam03349 Toluene_X Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.
Probab=98.85  E-value=2.2e-06  Score=53.49  Aligned_cols=61  Identities=23%  Similarity=0.414  Sum_probs=37.8

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      -+.+.+|+.|.++++|++.+-|.|+...+.+++..+.....-..+.+.+.|++.+++||||
T Consensus       355 r~~~s~G~~y~~~~~~~~d~ay~y~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~y~F  415 (415)
T pfam03349       355 RTWLSLGATYAFTKDLTIDAGFSYLFGKKVSIKENNVTNGTLPGTSSGSAHLFALSYNYRF  415 (415)
T ss_pred             CEEEEEEEEEECCCCCEEEEEEEEEECCCCCEEECCCCCCEEEEEEEEEEEEEEEEEEEEC
T ss_conf             6699940589859995899999999606553100167786078999748999999887679


No 11 
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=98.52  E-value=6.8e-06  Score=50.84  Aligned_cols=147  Identities=18%  Similarity=0.143  Sum_probs=74.9

Q ss_pred             CCCEEEEEEEEEEEEC-CEEEEE----EEEEEEECCCC------------------CCCC--CCCCCEEEEEEEEEEEEE
Q ss_conf             7550479988655445-779999----98867404777------------------6432--310100367989998633
Q gi|254781078|r   85 LPNGLGIELGHNIQLE-DFVFGI----NCHTTAAKDDS------------------TFYR--LKEKYFIYGDVVLKAGYS  139 (242)
Q Consensus        85 ~~~g~G~~~GYN~Q~~-~~V~Gv----E~d~~~~~~~~------------------~~~~--~~~k~~~~Gsvr~r~Gya  139 (242)
                      ...++|-++|-.|+++ +.-+|+    |.+....+.-.                  ....  .+.+.....++-..+-+.
T Consensus       216 ~~~g~G~~lG~~ye~~d~~r~g~~YrS~V~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~lP~~~el~~~~~  295 (440)
T COG2067         216 EDWGFGWNLGVAYEINDNNRIGLSYRSKVKMDFKGGYESSLNLGMAGLPIGPLALGGVTPGSGKLTLSLPASAELSGQHK  295 (440)
T ss_pred             CCCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCEEEEEEEEC
T ss_conf             56422067888981686405778973055674257732102554444444322447430234347770585799722640


Q ss_pred             E-CCEEEEEEEEEEEEEEECCCCCCCCCCC--CCCCCCCCCC-CCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEEC
Q ss_conf             1-4403444401145753011000236666--5555434556-5303798731667327876888898887448730003
Q gi|254781078|r  140 V-DSLLIYGMGGFGGAYVIDSSLEKVESDN--SKNAKGRFDG-HGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNN  215 (242)
Q Consensus       140 ~-~~~l~Y~~gG~A~~~~~~~~~~~~~~~~--~~~~~~~~d~-t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~  215 (242)
                      + +++++....  .  ++..+.....+-+.  .......... +|.+|++..|++|.+++.|++|+.+.|=.-..+..+.
T Consensus       296 ~~d~w~~~~s~--~--wT~WS~f~~l~~~~~~~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tlragiayD~s~s~~~~~  371 (440)
T COG2067         296 VADQWAIHGSV--K--WTDWSSFDKLDFVFTFGKTLFAKTEDGYRDTWTVALGTTYKFNDQWTLRAGIAYDQSPSPAQNR  371 (440)
T ss_pred             CCCCEEEEEEE--E--EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECEEECCCCCEEEEEEEECCCCCCCCCC
T ss_conf             38870799889--9--8651677448889768875224653341043179400106738663375003345788854455


Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             666666442201234138999886209
Q gi|254781078|r  216 SNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       216 ~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      ..       .-.+.|.+.+.+|++|+|
T Consensus       372 ~~-------~iPd~Dr~~~s~G~~Y~~  391 (440)
T COG2067         372 SI-------SIPDTDRWWLSLGTTYKF  391 (440)
T ss_pred             CC-------CCCCCCCEEEECCCEEEC
T ss_conf             43-------247877579966647725


No 12 
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=98.48  E-value=6.5e-05  Score=45.49  Aligned_cols=53  Identities=23%  Similarity=0.384  Sum_probs=26.3

Q ss_pred             EEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             8731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  185 LGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       185 vGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +.+|+.|.++++|++.+-|.|++...++++..+-     ..+.+.+.|++-+.+||+|
T Consensus       385 ~S~G~~y~~~~~~tvD~ay~yi~~~~~~i~~~~~-----~~~~~~~a~i~g~~~~Y~F  437 (437)
T PRK10716        385 LSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPY-----QFESEGKAWLFGTNFNYAF  437 (437)
T ss_pred             EEEEEEEECCCCCEEEEEEEEEECCCCCEECCCE-----EEEEEEEEEEEEEEEEEEC
T ss_conf             9812688548895799988999426641542403-----5687234899998888869


No 13 
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=98.47  E-value=2.2e-05  Score=48.10  Aligned_cols=60  Identities=13%  Similarity=0.214  Sum_probs=45.0

Q ss_pred             CCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             5565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  176 FDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       176 ~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      ...|+..|.+..|+||.++++|.+|+.|-|   +...++.....    ..=.+.|.+.+.+|.+|++
T Consensus       334 ~~nw~Dtw~~~~G~~Y~~~~~l~LRaG~aY---D~sPv~~~~~~----~~iPd~dR~~~S~G~~y~~  393 (437)
T PRK10716        334 HEGFKDAYRIALGTTYYYDDNWTFRTGIAF---DDSPVPAQNRS----ISIPDQDRFWLSAGTTYAF  393 (437)
T ss_pred             CCCCCCCEEEEEEEEEECCCCCEEEEEEEE---CCCCCCCCCCC----CCCCCCCCEEEEEEEEEEC
T ss_conf             457741007997899987998189887787---46888888656----2076888859981268854


No 14 
>COG3047 OmpW Outer membrane protein W [Cell envelope biogenesis, outer membrane]
Probab=98.43  E-value=1.9e-06  Score=53.86  Aligned_cols=109  Identities=14%  Similarity=0.117  Sum_probs=75.3

Q ss_pred             EEEEEEEEEE--EEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf             3679899986--33144034444011457530110002366665555434556530379873166732787688889888
Q gi|254781078|r  128 IYGDVVLKAG--YSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRY  205 (242)
Q Consensus       128 ~~Gsvr~r~G--ya~~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y  205 (242)
                      +.-+++++-=  -+.+.+-||+..|+.|...-........      ...-.-+..+|..+=+|++|+++++|.++..-+|
T Consensus       103 lPpTlt~Qyhf~~~~s~frPYvGaG~nYt~f~~e~~~~~~------~~~lkl~ns~G~a~q~G~Dy~l~~~w~ln~dV~~  176 (213)
T COG3047         103 LPPTLTAQYHFGDASSKFRPYVGAGLNYTTFFDEKFGSTG------LSDLKLKDSWGAAGQAGVDYMLNDDWLLNMDVKY  176 (213)
T ss_pred             ECCEEEEEEECCCCCCCCCCCEEECCCEEEEEEECCCCCC------CCEEEECCCCCEEEEEEEEEEECCCEEEEEEEEE
T ss_conf             0868899973168655544214503334899850147777------5404513554611685455890456188778899


Q ss_pred             EECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             7448730003666666442201234138999886209
Q gi|254781078|r  206 IPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       206 ~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +++.++.--..+........+.|.|.=++.+||.|||
T Consensus       177 ~~i~t~a~~~~~~g~~~~~~kvkLdPwv~~~GigyRF  213 (213)
T COG3047         177 MFIDTTAKYKAGLGGAKLKSKVKLDPWVFMIGIGYRF  213 (213)
T ss_pred             EECCCCEEECCCCCCCEEECCEECCCEEEEEEEEECC
T ss_conf             9615540342466775054103417649995326619


No 15 
>pfam07437 YfaZ YfaZ precursor. This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=98.34  E-value=8.4e-05  Score=44.87  Aligned_cols=102  Identities=18%  Similarity=0.095  Sum_probs=67.9

Q ss_pred             CCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECC-EEEEEEEEEEEEEEECCCCCC
Q ss_conf             7550479988655445779999988674047776432310100367989998633144-034444011457530110002
Q gi|254781078|r   85 LPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDS-LLIYGMGGFGGAYVIDSSLEK  163 (242)
Q Consensus        85 ~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~r~Gya~~~-~l~Y~~gG~A~~~~~~~~~~~  163 (242)
                      ++...++-.+++.|++++.+.+-+-..+.+.+....      .+--.+-+|+.+...+ +=+|+.+=+|=     +.   
T Consensus        58 dg~~~~~gl~~~~~~Gp~~~~vGgK~~y~~~~~g~~------G~Ava~GG~~~~~~~~~~sl~Ge~YyaP-----~~---  123 (180)
T pfam07437        58 DGDVAGGGLGMNLPAGPHHATVGAKGSYLWPDEGPN------GSAVAVGGGLALAIGPSFSLQGEAYYAP-----SV---  123 (180)
T ss_pred             CCCEECCEEEEECCCCCEEEEEEEEEEEECCCCCCC------CEEEEECCEEECCCCCCEEEEEEEEECC-----HH---
T ss_conf             996732404674056783898203699827666886------3189862568624588578988789880-----67---


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCC
Q ss_conf             366665555434556530379873166732787688889888744873
Q gi|254781078|r  164 VESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIH  211 (242)
Q Consensus       164 ~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~  211 (242)
                           .     .+ ....=+-+.+|++|.+.+++++.+.|||+++..+
T Consensus       124 -----l-----ss-Gvd~y~ea~~gv~~~v~~pl~v~aGYRyi~~~~~  160 (180)
T pfam07437       124 -----L-----SS-GVDSYYEANSGVRYNINRPMALYVGYRYINFEGK  160 (180)
T ss_pred             -----H-----CC-CCHHHEEECCCEEEEECCCCEEEEEEEEEEEECC
T ss_conf             -----3-----25-6203337346169997377289975799986636


No 16 
>pfam03797 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Probab=98.26  E-value=0.00016  Score=43.29  Aligned_cols=151  Identities=13%  Similarity=0.068  Sum_probs=88.0

Q ss_pred             EEEEEEEEEEEEEEEEEECCCCC--CCCCCCCC--CCCEEEEEEEEEEEE-CCEEEEEEEEEEEECCC--C------CCC
Q ss_conf             00057444644103322214555--66666766--755047998865544-57799999886740477--7------643
Q gi|254781078|r   54 WSGNYVGLHISRLYETHPLADTI--NRKTYNSL--LPNGLGIELGHNIQL-EDFVFGINCHTTAAKDD--S------TFY  120 (242)
Q Consensus        54 WtG~YiG~~~G~~~~~~~~~d~~--~~~~~n~~--~~~g~G~~~GYN~Q~-~~~V~GvE~d~~~~~~~--~------~~~  120 (242)
                      +.++|+-+.+++++...+.....  ......+.  ....+.+.+||+|++ ++|.+-..+.+.+....  .      ...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~i~P~~~l~y~~~~~~~f~E~g~~~~  163 (265)
T pfam03797        84 DGGLYLDGVLAYGRFDNDVKRLGTSTGTAKGDYDSHGLGASLEAGYRFKLSGNLTLTPFAGLQYVYLRQDGFTESGARSF  163 (265)
T ss_pred             CCCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCEEEECCCCC
T ss_conf             89836976788899715048730678730222802499999998762332697599699999999987687667099843


Q ss_pred             CCCCCCEEEEEEEEEEEEEE----C--CEEEEEEEEEEEEEEECCCCCCCC-----CCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             23101003679899986331----4--403444401145753011000236-----666555543455653037987316
Q gi|254781078|r  121 RLKEKYFIYGDVVLKAGYSV----D--SLLIYGMGGFGGAYVIDSSLEKVE-----SDNSKNAKGRFDGHGSSVVLGIGL  189 (242)
Q Consensus       121 ~~~~k~~~~Gsvr~r~Gya~----~--~~l~Y~~gG~A~~~~~~~~~~~~~-----~~~~~~~~~~~d~t~~G~tvGaGV  189 (242)
                      .++.+..-+-+++.++|..+    .  ++-||+..++++... ........     ...........+..+....+++|+
T Consensus       164 ~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  242 (265)
T pfam03797       164 ALSVDSQSLTNLSGPLGLRLEYRFSLRSLKPYATLGWAYEFD-DYRQVPTNGATLLASGGSWVTSGTPLARNAAELGAGV  242 (265)
T ss_pred             CEEEECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEECC-CCCCCEEEEEEEECCCCCEEECCCCCCCEEEEEEEEE
T ss_conf             517844666589999999999985287364899999999977-8875503999972689842996756665499999889


Q ss_pred             EEECCCCEEEEEEEEE
Q ss_conf             6732787688889888
Q gi|254781078|r  190 DYMVNYDISLSASYRY  205 (242)
Q Consensus       190 EYait~nwslraEY~Y  205 (242)
                      ++.+++++++.++|+.
T Consensus       243 ~~~~~~~~~l~~~~~~  258 (265)
T pfam03797       243 ELALGKNLSLFLNYSG  258 (265)
T ss_pred             EEEECCCEEEEEEEEE
T ss_conf             9998998699999970


No 17 
>pfam05736 OprF OprF membrane domain. This domain represents the presumed membrane spanning region of the OprF proteins. This region is involved in channel formation and is thought to form an 8-stranded beta-barrel.
Probab=98.10  E-value=7.4e-05  Score=45.18  Aligned_cols=125  Identities=18%  Similarity=0.195  Sum_probs=73.5

Q ss_pred             CCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCC-CCCEEEE-EEEEEEEEEE----CCEEEEEEEEEEEEEEECC
Q ss_conf             55047998865544577999998867404777643231-0100367-9899986331----4403444401145753011
Q gi|254781078|r   86 PNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLK-EKYFIYG-DVVLKAGYSV----DSLLIYGMGGFGGAYVIDS  159 (242)
Q Consensus        86 ~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~-~k~~~~G-svr~r~Gya~----~~~l~Y~~gG~A~~~~~~~  159 (242)
                      +..+|+-+||++.-+     +|.+..+...+.....-. ...+.-| ..|.-.=|-|    +.+-||+.+|++-+...+.
T Consensus        50 g~~~G~~iGY~lTdd-----vsl~l~y~~~~~~r~~~~~g~~~i~g~~~rLDalYHF~~pg~~lrPYvs~G~gh~s~~~~  124 (184)
T pfam05736        50 GDLPGGSIGYFLTDD-----VELNLSYDETHDTRSTDGTGNQKVGGDLTSLDAQYHFGTPGDGLRPYVSAGFAHQSITNV  124 (184)
T ss_pred             CCCCEEEEEEECCCC-----EEEEEEECCCCCHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEECC
T ss_conf             896403652571788-----389988734210001357666103563466777997389876633727731465200022


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             00023666655554345565303798731667327876888898887448730003666666442201234138999886
Q gi|254781078|r  160 SLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGIN  239 (242)
Q Consensus       160 ~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~Gin  239 (242)
                      .         .....+..+|  =..+|+|+.|-||+||.+|+|-|=+-                .+|.....-.+++||+
T Consensus       125 ~---------~g~~Grd~sT--~~N~G~G~Ky~itdn~~aRa~vra~y----------------~lD~~~~d~~a~vGl~  177 (184)
T pfam05736       125 A---------DGSQGRDQST--FANIGAGAKYYFTENFYARAGVEAQY----------------GLDNGDWEWAALVGLG  177 (184)
T ss_pred             C---------CCCCCCCCCE--EEEECCCEEEEECCCEEEEECHHHHC----------------CCCCCCCCEEEEEEEE
T ss_conf             5---------6877656441--67634526899605447761325310----------------4778861200455249


Q ss_pred             EEC
Q ss_conf             209
Q gi|254781078|r  240 MHF  242 (242)
Q Consensus       240 Y~F  242 (242)
                      |.|
T Consensus       178 ~~F  180 (184)
T pfam05736       178 VNF  180 (184)
T ss_pred             EEC
T ss_conf             960


No 18 
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=97.94  E-value=0.00082  Score=39.45  Aligned_cols=104  Identities=18%  Similarity=0.213  Sum_probs=65.7

Q ss_pred             EEE--EEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf             367--989998633144034444011457530110002366665555434556530379873166732787688889888
Q gi|254781078|r  128 IYG--DVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRY  205 (242)
Q Consensus       128 ~~G--svr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y  205 (242)
                      |.-  +++.=+.|.++.-| =+.+|++|-+.   .+.....      ..+. --...|++++|+-|.+++|+++++-|-|
T Consensus       335 yrD~wt~a~G~~Y~~nd~~-tlragiayD~s---~s~~~~~------~~~i-Pd~Dr~~~s~G~~Y~~t~n~~vd~g~ay  403 (440)
T COG2067         335 YRDTWTVALGTTYKFNDQW-TLRAGIAYDQS---PSPAQNR------SISI-PDTDRWWLSLGTTYKFTKNLEVDAGYAY  403 (440)
T ss_pred             CCCCCEEEEECEEECCCCC-EEEEEEEECCC---CCCCCCC------CCCC-CCCCCEEEECCCEEECCCCEEEEEEEEE
T ss_conf             1043179400106738663-37500334578---8854455------4324-7877579966647725998389988899


Q ss_pred             EECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             7448730003666666442201234138999886209
Q gi|254781078|r  206 IPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       206 ~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +-..+.+++...........+.+...|.+.+.+||+|
T Consensus       404 ~~~~~~s~~~~~~~g~~~~~~~~~~a~~~~ls~~ykF  440 (440)
T COG2067         404 LKGKSVSINEVRGAGVTLSGFSKGSAHLFGLSLNYKF  440 (440)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEC
T ss_conf             9841442102456773002311117999998877619


No 19 
>pfam03349 Toluene_X Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.
Probab=97.84  E-value=0.00063  Score=40.08  Aligned_cols=146  Identities=14%  Similarity=0.109  Sum_probs=79.4

Q ss_pred             CCEEEEEEEEEEEEC-CEEEEEE----EEEEE------ECCCC---------CCCCCCCCCEEEEEEEEEEEEEEC-CEE
Q ss_conf             550479988655445-7799999----88674------04777---------643231010036798999863314-403
Q gi|254781078|r   86 PNGLGIELGHNIQLE-DFVFGIN----CHTTA------AKDDS---------TFYRLKEKYFIYGDVVLKAGYSVD-SLL  144 (242)
Q Consensus        86 ~~g~G~~~GYN~Q~~-~~V~GvE----~d~~~------~~~~~---------~~~~~~~k~~~~Gsvr~r~Gya~~-~~l  144 (242)
                      ..++|.++|-.||.. ++.+|+-    .+...      .....         .....+.+.+.-..+..=+.|.+. ++.
T Consensus       195 ~~g~G~~~G~~~~~~~~~~~G~sYrS~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~~g~~~~~~~~~~  274 (415)
T pfam03349       195 AWGVGWNLGVLYEPTDNTRIGASYRSKVKLDLKGKYTLSAVSGAAGNLAYGGSPLSGELRIQLPASLELGISHQFNDQWA  274 (415)
T ss_pred             EEEEEEEEEEEEECCCCCEEEEEEECCEEEEEECCEEEEECCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCEE
T ss_conf             69840899999980899889999943127998521435505654443456776644258735891899999998489889


Q ss_pred             EEEEEEEEEEEEECCCCCCC-----CCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCC
Q ss_conf             44440114575301100023-----6666555543455653037987316673278768888988874487300036666
Q gi|254781078|r  145 IYGMGGFGGAYVIDSSLEKV-----ESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAK  219 (242)
Q Consensus       145 ~Y~~gG~A~~~~~~~~~~~~-----~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~  219 (242)
                      +-+..  -|  +..+.....     ..............++.-|.+-.|+||.++++|.+|+.|.|-.-   .+....  
T Consensus       275 l~~d~--~~--~~WS~~~~l~~~~~~~~~~~~~~~~~~~w~d~~~~~~G~eY~~~~~l~LRaG~~yd~s---pv~~~~--  345 (415)
T pfam03349       275 VHASV--KR--TFWSDFDKLIFVLFVFAKGGTDLSLPQNYRDTTTYALGTDYQFNDRWTLRAGYAYDQS---ATPAES--  345 (415)
T ss_pred             EEEEE--EE--EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEECCC---CCCCCC--
T ss_conf             99999--99--8730000102234455677645346768415008987899985998699974765467---878776--


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             66442201234138999886209
Q gi|254781078|r  220 SDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       220 ~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                        ....-.+.+.|.+.+|..|++
T Consensus       346 --~~~~~Pd~dr~~~s~G~~y~~  366 (415)
T pfam03349       346 --RSARIPDTDRTWLSLGATYAF  366 (415)
T ss_pred             --CCEECCCCCCEEEEEEEEEEC
T ss_conf             --360045778669994058985


No 20 
>smart00869 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
Probab=97.79  E-value=0.002  Score=37.40  Aligned_cols=153  Identities=13%  Similarity=0.089  Sum_probs=71.4

Q ss_pred             EEEEEEEEEEEEEEEEECCCCCCCCC----CC--CCCCCEEEEEEEEEEEEC-CEEEEEEEEEEEECCCCCCCCCC----
Q ss_conf             00574446441033222145556666----67--667550479988655445-77999998867404777643231----
Q gi|254781078|r   55 SGNYVGLHISRLYETHPLADTINRKT----YN--SLLPNGLGIELGHNIQLE-DFVFGINCHTTAAKDDSTFYRLK----  123 (242)
Q Consensus        55 tG~YiG~~~G~~~~~~~~~d~~~~~~----~n--~~~~~g~G~~~GYN~Q~~-~~V~GvE~d~~~~~~~~~~~~~~----  123 (242)
                      .++|+.+.+++++.+.+.........    ..  +.....+.+.+||++.++ .|.+...+.+.+..........+    
T Consensus        79 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~P~~~l~~~~~~~~~~~E~~~~~  158 (261)
T smart00869       79 NGLYLDAQLGYGRSDNDTKRTVTLGGAGTAKGSYDGTTYGASLEAGYPFKLGGSLTLTPFAGLAYSYVRQDGFTESGGAF  158 (261)
T ss_pred             CCEEEEEEEEEEEEEEEEEEEEECCCCCCEEEEEECEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCEEECCCCH
T ss_conf             98899999899998626899980488751167770408999997330122346789998999999999759767719602


Q ss_pred             ---CCCEEEEEEEEEEEEEECC---------EEEEEEEEEEEEEEECCCC--CCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             ---0100367989998633144---------0344440114575301100--0236666555543455653037987316
Q gi|254781078|r  124 ---EKYFIYGDVVLKAGYSVDS---------LLIYGMGGFGGAYVIDSSL--EKVESDNSKNAKGRFDGHGSSVVLGIGL  189 (242)
Q Consensus       124 ---~k~~~~Gsvr~r~Gya~~~---------~l~Y~~gG~A~~~~~~~~~--~~~~~~~~~~~~~~~d~t~~G~tvGaGV  189 (242)
                         .+..-.-+++.|+|..++.         +.|++..++...-......  ...............+..+....+++|+
T Consensus       159 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  238 (261)
T smart00869      159 ALSVDSQSLDSLSLPLGLRLGYAFALGDGSTLTPYLSLAYQHDFYDKNPVVTASLLGAGGSFTTSGTDLSRNAAELGLGL  238 (261)
T ss_pred             HCEECCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEHHCCCCHHEEEEEECCCCCEEEECCCCCCCEEEEEEEE
T ss_conf             11321566437999999999989985899699999999999435399935699997589852993767787489999999


Q ss_pred             EEECCCCEEEEEEEEEEE
Q ss_conf             673278768888988874
Q gi|254781078|r  190 DYMVNYDISLSASYRYIP  207 (242)
Q Consensus       190 EYait~nwslraEY~Y~d  207 (242)
                      ++.+.+.+++.++|.+.-
T Consensus       239 ~~~~~~~~~~~~~~~~~~  256 (261)
T smart00869      239 SAKLSNGLSLSLNYDGEF  256 (261)
T ss_pred             EEEECCCEEEEEEEEEEE
T ss_conf             999899889999999998


No 21 
>pfam06629 MipA MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.
Probab=97.49  E-value=0.0056  Score=34.91  Aligned_cols=136  Identities=18%  Similarity=0.102  Sum_probs=77.6

Q ss_pred             EEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEC-CEEEEEEEEEEEEEEECCCCCCCCC--
Q ss_conf             7998865544577999998867404777643231010036798999863314-4034444011457530110002366--
Q gi|254781078|r   90 GIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVD-SLLIYGMGGFGGAYVIDSSLEKVES--  166 (242)
Q Consensus        90 G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~r~Gya~~-~~l~Y~~gG~A~~~~~~~~~~~~~~--  166 (242)
                      .+-+...|+.+.+.+.++......+..         ..+...++...-+.++ ++.+-...|+.|+.-+....-.--+  
T Consensus        86 ~~G~~~~~~~~~~~~~~~~~~dv~~~~---------~G~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~y~~yyyGV~~~  156 (226)
T pfam06629        86 VGGLKAAYDTGWGTVRAELEQDISNGS---------RGFVADIGLAATYDLGDRLSLSPSLGLSYASRKYNDYYFGVSAA  156 (226)
T ss_pred             EEEEEEEEECCCEEEEEEEEEECCCCC---------CCEEEEEEEEEEEECCCCEEEEEEEEEEECCHHHHHHHHCCCHH
T ss_conf             217899999488899999999324673---------88999999999996399779999789998677675655377978


Q ss_pred             CCCCC--CCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             66555--54345565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  167 DNSKN--AKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       167 ~~~~~--~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +....  +....+.....+.+++-+.|.+++||++.+.-+|..+.....|-+     +  |+.+ ..-++.+||+|+|
T Consensus       157 ea~~s~~~~Y~a~~g~~~~~~~~~~~y~l~~~w~~~~~~~~~~L~~~~~dSP-----i--v~~~-~~~~~~~g~~Y~F  226 (226)
T pfam06629       157 ESARSGLAQYNAGAGLWSAGLGLSATYMLTDHWSALGSASYTRLSGDAADSP-----I--VERR-GQPSAGLGVAYRF  226 (226)
T ss_pred             HHHHCCCCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEECCCCHHCCC-----C--EEEC-CCEEEEEEEEEEC
T ss_conf             9612378640578770789999999999669999999999998488211499-----5--8867-8789999999989


No 22 
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane.  Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are  found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=97.18  E-value=0.013  Score=32.91  Aligned_cols=58  Identities=19%  Similarity=0.248  Sum_probs=37.9

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      -..+..|+||.|+.+..+-+||.|++..........   .........+.+.+.+||.|+|
T Consensus       272 ~~~~~lG~~Y~lSKrT~lY~~~~~~~n~~~~~~~~~---~~~~~~~~~~~~~~~~Girh~F  329 (329)
T cd00342         272 ANQVALGADYALSKRTDLYAEYGYQKNSGGASTGLA---GGGGPSSGNNQDGVAVGIRHKF  329 (329)
T ss_pred             EEEEEEEEEEEECCCHHHHHHHHHEECCCCCCEECC---CCCCCCCCCCEEEEEEEEEEEC
T ss_conf             189999999971554898665054110687504325---6777789986599999819989


No 23 
>pfam12099 DUF3575 Protein of unknown function (DUF3575). This family of proteins are functionally uncharacterized. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=96.91  E-value=0.024  Score=31.48  Aligned_cols=38  Identities=18%  Similarity=0.266  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEE
Q ss_conf             56788889874365202343320254345753211033
Q gi|254781078|r    8 ALFFVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVE   45 (242)
Q Consensus         8 ~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~   45 (242)
                      .+++++.+..++|.++|..-+-+--.-+.+-++...+|
T Consensus         7 ~~~~~~~~~~~~~~~aQ~~alKTNll~~a~~tpNlg~E   44 (186)
T pfam12099         7 LLLFLLLFCSLSPARAQVVAVKTNLLYDATTTPNLGVE   44 (186)
T ss_pred             EHHHHHHHHHCCCCEEEEEEEEECHHHHHHHCCCEEEE
T ss_conf             07689998715532016898980455688629734899


No 24 
>COG3203 OmpC Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]
Probab=96.73  E-value=0.033  Score=30.67  Aligned_cols=57  Identities=11%  Similarity=0.142  Sum_probs=41.7

Q ss_pred             CCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             65303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  178 GHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       178 ~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      ....-..+..|++|.|+.|.++-+||.|....+....  ..+    .  .......+.|||.|+|
T Consensus       298 ~~~~~~~~~~ga~Y~fsKrt~~Yv~y~~~~~~~~~~~--~~~----~--~~~~~~~v~VGlr~~F  354 (354)
T COG3203         298 DKDLVKYVDVGATYYFSKNTSTYVDYGINLLDSDDNA--TVP----G--GGNTDNGVAVGLRYQF  354 (354)
T ss_pred             CCCCCEEEEEEEEEEEECCEEEEEEEEEEECCCCCCC--CCC----C--CCCCCCEEEEEEEEEC
T ss_conf             8876059995017998047248999888741566753--045----6--6654313899879869


No 25 
>smart00869 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
Probab=96.51  E-value=0.047  Score=29.82  Aligned_cols=152  Identities=19%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             CEEEEEEEEEEEEC-CEEEEEEEEEEEECCCCCC-------CCCCCC-CEEEEEEEEEEEEEE--C-CEEEEEEEEEEEE
Q ss_conf             50479988655445-7799999886740477764-------323101-003679899986331--4-4034444011457
Q gi|254781078|r   87 NGLGIELGHNIQLE-DFVFGINCHTTAAKDDSTF-------YRLKEK-YFIYGDVVLKAGYSV--D-SLLIYGMGGFGGA  154 (242)
Q Consensus        87 ~g~G~~~GYN~Q~~-~~V~GvE~d~~~~~~~~~~-------~~~~~k-~~~~Gsvr~r~Gya~--~-~~l~Y~~gG~A~~  154 (242)
                      ..+|+++.+  ++. +|-+-..+.+.+.+.+...       ...+.+ ..+.-...+++||.+  + ++.+=-.+++.|.
T Consensus        67 ~~~g~y~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~P~~~l~~~  144 (261)
T smart00869       67 YSLGLYAGY--SLGNGLYLDAQLGYGRSDNDTKRTVTLGGAGTAKGSYDGTTYGASLEAGYPFKLGGSLTLTPFAGLAYS  144 (261)
T ss_pred             EEEEEEEEE--ECCCCEEEEEEEEEEEEEEEEEEEEECCCCCCEEEEEECEEEEEEEEECCCCCCCCCEEEEEEEEEEEE
T ss_conf             899999999--969988999998999986268999804887511677704089999973301223467899989999999


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC------CEEEEEEEEEEECCCCEE---EC--CCCCCCCC
Q ss_conf             53011000236666555543455653037987316673278------768888988874487300---03--66666644
Q gi|254781078|r  155 YVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNY------DISLSASYRYIPHHIHSV---NN--SNAKSDVE  223 (242)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~------nwslraEY~Y~d~g~~~~---~~--~~~~~~~~  223 (242)
                      +++.+........... .....+.+..-..+|+-+++.+..      .+.+++.|.+--.++...   ..  ........
T Consensus       145 ~~~~~~~~E~~~~~~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (261)
T smart00869      145 YVRQDGFTESGGAFAL-SVDSQSLDSLSLPLGLRLGYAFALGDGSTLTPYLSLAYQHDFYDKNPVVTASLLGAGGSFTTS  223 (261)
T ss_pred             EEECCCEEECCCCHHC-EECCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEHHCCCCHHEEEEEECCCCCEEEE
T ss_conf             9975976771960211-321566437999999999989985899699999999999435399935699997589852993


Q ss_pred             CCCCCCCEEEEEEEEEEE
Q ss_conf             220123413899988620
Q gi|254781078|r  224 RVDRKGNAHIASLGINMH  241 (242)
Q Consensus       224 ~~~~~~~~h~v~~GinY~  241 (242)
                      ..+.+.+...+.+|+.++
T Consensus       224 ~~~~~~~~~~~~~g~~~~  241 (261)
T smart00869      224 GTDLSRNAAELGLGLSAK  241 (261)
T ss_pred             CCCCCCCEEEEEEEEEEE
T ss_conf             767787489999999999


No 26 
>pfam10082 DUF2320 Uncharacterized protein conserved in bacteria (DUF2320). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=96.08  E-value=0.084  Score=28.47  Aligned_cols=50  Identities=26%  Similarity=0.393  Sum_probs=38.5

Q ss_pred             EEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             03798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  181 SSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       181 ~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .-+.+++|+.|.++++|.+.+.|+|.+...      +    .  -..+++.++|.+||..++
T Consensus       331 ~~~~~~~~l~Y~~~r~l~l~~~y~~~~~~S------~----~--~~~~y~~n~v~l~l~~~~  380 (380)
T pfam10082       331 ETYSAEAGLTYKLNRWLDLTAGVRYEDLDS------N----I--PGRSYDANVVGLGLTLQR  380 (380)
T ss_pred             CEEEEEEEEEEEEECCEEEEEEEEEEEEEC------C----C--CCCCEEEEEEEEEEEEEC
T ss_conf             339999999998417799999999997037------8----8--878625059999999979


No 27 
>pfam03797 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Probab=95.78  E-value=0.11  Score=27.72  Aligned_cols=181  Identities=14%  Similarity=0.072  Sum_probs=81.8

Q ss_pred             EEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCC-----CCCCCCC-CEEEE
Q ss_conf             57444644103322214555666667667550479988655445779999988674047776-----4323101-00367
Q gi|254781078|r   57 NYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDST-----FYRLKEK-YFIYG  130 (242)
Q Consensus        57 ~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~-----~~~~~~k-~~~~G  130 (242)
                      .-+|+.+++..++.+..+..   ...+.....+++++.|+.+ ++|-+-....+.+.+.+..     ....+.+ ..+.-
T Consensus        46 ~~~G~~~~~~~~~~~~~~~~---~~~~~~~~~~g~y~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  121 (265)
T pfam03797        46 LILGLAFGYSFSKSKSDDGG---GKGKSDSYGAGLYAQWNFD-GGLYLDGVLAYGRFDNDVKRLGTSTGTAKGDYDSHGL  121 (265)
T ss_pred             EEEEEEEEEEEEECCCCCCC---CCEEEEEEEEEEEEEEECC-CCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEEEEE
T ss_conf             59999999985222117888---7677670799999999848-9836976788899715048730678730222802499


Q ss_pred             EEEEEEEEEEC---CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC---CEEEEEEEE
Q ss_conf             98999863314---403444401145753011000236666555543455653037987316673278---768888988
Q gi|254781078|r  131 DVVLKAGYSVD---SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNY---DISLSASYR  204 (242)
Q Consensus       131 svr~r~Gya~~---~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~---nwslraEY~  204 (242)
                      ++.+++||.+.   ++.+--..++.|.+++.+...........-.....+....-..+|.-+|+.+..   ++.+++.+.
T Consensus       122 ~~~~~~gy~~~~~~~~~i~P~~~l~y~~~~~~~f~E~g~~~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~  201 (265)
T pfam03797       122 GASLEAGYRFKLSGNLTLTPFAGLQYVYLRQDGFTESGARSFALSVDSQSLTNLSGPLGLRLEYRFSLRSLKPYATLGWA  201 (265)
T ss_pred             EEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCEEEECCCCCCEEEECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEE
T ss_conf             99999876233269759969999999998768766709984351784466658999999999998528736489999999


Q ss_pred             EE--ECCCCEEEC---CC--CCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf             87--448730003---66--666644220123413899988620
Q gi|254781078|r  205 YI--PHHIHSVNN---SN--AKSDVERVDRKGNAHIASLGINMH  241 (242)
Q Consensus       205 Y~--d~g~~~~~~---~~--~~~~~~~~~~~~~~h~v~~GinY~  241 (242)
                      |.  +........   ..  ....+...+.+.+.-.+.+|+++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  245 (265)
T pfam03797       202 YEFDDYRQVPTNGATLLASGGSWVTSGTPLARNAAELGAGVELA  245 (265)
T ss_pred             EECCCCCCCEEEEEEEECCCCCEEECCCCCCCEEEEEEEEEEEE
T ss_conf             99778875503999972689842996756665499999889999


No 28 
>PRK09752 adhesin; Provisional
Probab=95.75  E-value=0.12  Score=27.65  Aligned_cols=145  Identities=8%  Similarity=-0.056  Sum_probs=75.4

Q ss_pred             EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECC-EEEEEEEEEEEECCCCCC----CCCCCCCEEE
Q ss_conf             00574446441033222145556666676675504799886554457-799999886740477764----3231010036
Q gi|254781078|r   55 SGNYVGLHISRLYETHPLADTINRKTYNSLLPNGLGIELGHNIQLED-FVFGINCHTTAAKDDSTF----YRLKEKYFIY  129 (242)
Q Consensus        55 tG~YiG~~~G~~~~~~~~~d~~~~~~~n~~~~~g~G~~~GYN~Q~~~-~V~GvE~d~~~~~~~~~~----~~~~~k~~~~  129 (242)
                      +|+||-.-+=|+|-..++...-.....-+..+..+-+..||-|-.++ |.+=-.+.+.|...+...    +.-+.+.+--
T Consensus      1077 ~GAYVDSWaQYSWFNNsV~GqdLAsEsYDSkG~TASLESGYtfklGe~~~IQPQAQVIWMGVKADsHTEaNGTrVsgeGd 1156 (1250)
T PRK09752       1077 QGAWLDSWLQYAWFNNDVSEQDDGVDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANHARVSQSQG 1156 (1250)
T ss_pred             CCEEEEEEEEEEEECCEECCCCCCHHEECCCCEEEEEECCCEEECCCCEEEEEEEEEEEEECCCCCCCCCCCCEEECCCC
T ss_conf             85368554675556461026865200013511799985587796898389802159999731455331157878864689


Q ss_pred             EEEEEEEEEEE-----CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEE
Q ss_conf             79899986331-----4403444401145753011000236666555543455653037987316673278768888988
Q gi|254781078|r  130 GDVVLKAGYSV-----DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYR  204 (242)
Q Consensus       130 Gsvr~r~Gya~-----~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~  204 (242)
                      ++++.|+|...     ..+.||+-.-  |-+.........+     ...-+.+..+.=--+-.|||=.++++|++..--.
T Consensus      1157 dNIQTRLGvRse~kk~~~fqPFVEaN--WIHNTkdfgvsMD-----GvtVkQDGarNiGELKvGVEGQINk~lnvWGNVa 1229 (1250)
T PRK09752       1157 DDIQTRLGLHSEWRTAVHVIPTLDLN--YYHDPHSTEIEED-----GSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVA 1229 (1250)
T ss_pred             CCEEEEEEEEECCCCCCCCCCEEEEE--EEECCCCCEEEEC-----CEEEECCCCCCCCEEECCEEEEECCCEEEEEEEE
T ss_conf             96676335886146677645016877--6653886237717-----9065013331301036116999767467898766


Q ss_pred             EE
Q ss_conf             87
Q gi|254781078|r  205 YI  206 (242)
Q Consensus       205 Y~  206 (242)
                      +-
T Consensus      1230 qQ 1231 (1250)
T PRK09752       1230 WQ 1231 (1250)
T ss_pred             EE
T ss_conf             88


No 29 
>pfam00267 Porin_1 Gram-negative porin.
Probab=95.66  E-value=0.13  Score=27.47  Aligned_cols=49  Identities=14%  Similarity=0.226  Sum_probs=34.4

Q ss_pred             EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             98731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      -+-+|+||.|+.+.++-+||.+....+....         ..+. .+...+.|||.|+|
T Consensus       286 q~~lg~dY~fSKrt~~Y~~Y~~~~~d~~~~~---------~~~~-~~dd~~~vGlRY~F  334 (334)
T pfam00267       286 YVDVGATYYFNKNMSAYVDYKINLLDKGDDF---------AAGI-NTDDAVAVGLVYQF  334 (334)
T ss_pred             EEEEEEEEEECCCCEEEEEEEEECCCCCCCC---------CCCC-CCCCEEEEEEEEEC
T ss_conf             9999989996588049999987625666544---------4677-76888999808819


No 30 
>pfam11854 DUF3374 Protein of unknown function (DUF3374). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 665 to 712 amino acids in length.
Probab=95.60  E-value=0.13  Score=27.34  Aligned_cols=18  Identities=17%  Similarity=0.254  Sum_probs=8.0

Q ss_pred             HHHHHHHHHCC-CCEEEEE
Q ss_conf             78888987436-5202343
Q gi|254781078|r   10 FFVVFLSIVVP-NHSLAVD   27 (242)
Q Consensus        10 ~~~~~~~~~~~-~~~~a~d   27 (242)
                      |++++++|++- ..+.|+|
T Consensus         5 l~lialAll~~~~~a~A~~   23 (675)
T pfam11854         5 LNLIALALLAAAFSANAAD   23 (675)
T ss_pred             HHHHHHHHHHHCCHHHHCC
T ss_conf             2299999986243333156


No 31 
>pfam05736 OprF OprF membrane domain. This domain represents the presumed membrane spanning region of the OprF proteins. This region is involved in channel formation and is thought to form an 8-stranded beta-barrel.
Probab=95.53  E-value=0.027  Score=31.13  Aligned_cols=99  Identities=8%  Similarity=-0.028  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEEEEEEEEE--------EECCCC--CC
Q ss_conf             56788889874365202343320254345753211033037665300005744464410332--------221455--56
Q gi|254781078|r    8 ALFFVVFLSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYGIWSGNYVGLHISRLYET--------HPLADT--IN   77 (242)
Q Consensus         8 ~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~WtG~YiG~~~G~~~~~--------~~~~d~--~~   77 (242)
                      +..-.++++.+.|..||-.--+--+|--+++.-|-..+.-       .|.=.|+.+||-+..        .+..+.  ..
T Consensus         9 ~aig~lvaa~s~~alAqgqgave~e~f~g~~~fDs~r~~~-------~g~~~G~~iGY~lTddvsl~l~y~~~~~~r~~~   81 (184)
T pfam05736         9 FAIGSLVAATSFGALAQGQGAVEIEAFYKKQYNDSVRNMK-------NGDLPGGSIGYFLTDDVELNLSYDETHDTRSTD   81 (184)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCCC-------CCCCCEEEEEEECCCCEEEEEEECCCCCHHCCC
T ss_conf             7888888873016776546747984226647526313532-------489640365257178838998873421000135


Q ss_pred             CCCCCCCCCCEEEEEEEEEE-EE----CCEEEEEEEEEEEE
Q ss_conf             66667667550479988655-44----57799999886740
Q gi|254781078|r   78 RKTYNSLLPNGLGIELGHNI-QL----EDFVFGINCHTTAA  113 (242)
Q Consensus        78 ~~~~n~~~~~g~G~~~GYN~-Q~----~~~V~GvE~d~~~~  113 (242)
                      .....++.+.-+.+-+=|++ +-    -|+|-+.-++.+..
T Consensus        82 ~~g~~~i~g~~~rLDalYHF~~pg~~lrPYvs~G~gh~s~~  122 (184)
T pfam05736        82 GTGNQKVGGDLTSLDAQYHFGTPGDGLRPYVSAGFAHQSIT  122 (184)
T ss_pred             CCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEE
T ss_conf             76661035634667779973898766337277314652000


No 32 
>COG5338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.32  E-value=0.056  Score=29.43  Aligned_cols=78  Identities=10%  Similarity=0.207  Sum_probs=41.6

Q ss_pred             CCCCCCCCCEEEEEEEEEEEEEECCEE-EEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf             643231010036798999863314403-4444011457530110002366665555434556530379873166732787
Q gi|254781078|r  118 TFYRLKEKYFIYGDVVLKAGYSVDSLL-IYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYD  196 (242)
Q Consensus       118 ~~~~~~~k~~~~Gsvr~r~Gya~~~~l-~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~n  196 (242)
                      +....+.+-.-..++++|+||.+.|.| ||+..-+.    +...-..++.       ..+.....+|.+++|+|+.+.+.
T Consensus       253 ttvsqkDRD~n~~s~~~R~gYelSPal~pf~e~~vg----k~~YD~ridt-------~G~eRSs~~Y~~r~G~~~D~gEk  321 (468)
T COG5338         253 TTVSQKDRDRNLASLTGRIGYELSPALIPFAEAEVG----KRDYDTRIDT-------QGYERSSDGYGARVGAEFDLGEK  321 (468)
T ss_pred             CCCCHHCCCCCCCEEEEECCEEECCCCCEEEEEECC----CCHHHHHCCC-------CCCCCCCCCCCCCCCEEECHHHH
T ss_conf             723320135440002321112336542202676237----3102110244-------34223444200013246600042


Q ss_pred             EEEEEEEEEE
Q ss_conf             6888898887
Q gi|254781078|r  197 ISLSASYRYI  206 (242)
Q Consensus       197 wslraEY~Y~  206 (242)
                      +.--+.--|+
T Consensus       322 ~~GE~aiGYm  331 (468)
T COG5338         322 LRGEVAIGYM  331 (468)
T ss_pred             HCCCCHHHHH
T ss_conf             1650000011


No 33 
>TIGR01414 autotrans_barl outer membrane autotransporter barrel domain; InterPro: IPR006315   The secretion of protein products occurs by a number of different pathways in bacteria and several secretion mechanisms have been described for Gram-negative bacteria , an increasing number employ a highly efficient but simple mechanism first described for the immunoglobulin A1 (IgA1) proteases , .    The autotransporter secretion pathway  is a distinct secretion mechanism, in which the protein moiety mediating export through the outer membrane is contained within the precursor of the secreted protein itself. Autotransporters have been implicated as important or putative virulence factors  such as mediating adhesion to host cells or by mediating actin-promoted bacterial mobility .   The key feature of an autotransporter is that it contains all the information for secretion in the precursor of the secreted protein itself . Autotransporters comprise three functional domains: 1) an N-terminal targeting domain (amino-terminal leader sequence) that functions as a signal peptide to mediate targeting to and translocation across the inner membrane 2) a C-terminal translocation domain (carboxy-terminal) that forms a beta-barrel pore to allow the secretion  of 3) the passenger domain, the secreted mature protein .   This entry shows the C-terminal autotransporter domain, it is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus.; GO: 0019867 outer membrane.
Probab=95.11  E-value=0.2  Score=26.43  Aligned_cols=167  Identities=16%  Similarity=0.128  Sum_probs=101.6

Q ss_pred             EEEEEEEEEEEEEEEEECCCCCCC----CCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCC--------CCC
Q ss_conf             005744464410332221455566----66676675504799886554457799999886740477764--------323
Q gi|254781078|r   55 SGNYVGLHISRLYETHPLADTINR----KTYNSLLPNGLGIELGHNIQLEDFVFGINCHTTAAKDDSTF--------YRL  122 (242)
Q Consensus        55 tG~YiG~~~G~~~~~~~~~d~~~~----~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~--------~~~  122 (242)
                      +|+|+-..+-+.|....+......    .......+.+..+.+||.|.+. |.+--.+.+.+.......        ...
T Consensus       265 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~-~~~~P~~~~~~~~~~~~~~~~~~g~~~~~  343 (454)
T TIGR01414       265 TGAYVDGWLKYSWFNNDLSSLGSGGKSVSGKYNSNGLGASLEAGYRYNLG-WYLEPQAQLSYLGVSGDDYKESNGTRVLG  343 (454)
T ss_pred             CCEEEEHEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEE-EEEECCEEEEEEEECCCCEECCCCEEEEE
T ss_conf             31121000000000020100135542013444333114543114011004-67500036888740564201046536760


Q ss_pred             CC--CCEEEEEEEEEEE---EEE-----CCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf             10--1003679899986---331-----4403444401145753011000236666555543455653037987316673
Q gi|254781078|r  123 KE--KYFIYGDVVLKAG---YSV-----DSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYM  192 (242)
Q Consensus       123 ~~--k~~~~Gsvr~r~G---ya~-----~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYa  192 (242)
                      ..  ...+.+.+..+++   +.+     ..+-||....+....... ........  .......+..+..+.++.|++..
T Consensus       344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~  420 (454)
T TIGR01414       344 GGDSGDSLQGRLGLRLGYKASQFDLGTGRALKPYLKANWLHEFGGL-GGNGVLVN--GGVTLRNDGSGTRGELGLGVNAS  420 (454)
T ss_pred             CCCCCCCEEEECCEEECCCHHHHHCCCCCEEEEEEEEEEEEECCCC-CCCEEEEC--CCCCCCCCCCCCEEEEECCEEEE
T ss_conf             5665320000001000010000000367322146777653101477-75315751--65200244444224431240244


Q ss_pred             CC-CCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             27-876888898887448730003666666442201234138999886209
Q gi|254781078|r  193 VN-YDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       193 it-~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +. +++++..++.|...+                 .........+|+.|.|
T Consensus       421 ~~~~~~~~~~~~~~~~g~-----------------~~~~~~~~~~g~~~~~  454 (454)
T TIGR01414       421 LKSPNLSLYLDVDYQLGG-----------------KGETPWSGNLGVRYSF  454 (454)
T ss_pred             ECCCCEEEEEEEECCCCC-----------------CCCCCEEEEEEEEEEC
T ss_conf             336421576531001366-----------------5333203555357739


No 34 
>pfam05420 BCSC_C Cellulose synthase operon protein C C-terminus (BCSC_C). This family contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown.
Probab=94.85  E-value=0.23  Score=26.02  Aligned_cols=51  Identities=16%  Similarity=0.095  Sum_probs=37.9

Q ss_pred             CCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             345565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  174 GRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       174 ~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      ...+++-.||++.|.+||.++++|.+.++-.+-..                  .+++.....+-|.|-|
T Consensus       286 ~g~S~~G~~y~l~a~~Eyrls~~~~lG~~~~~~~a------------------~dY~p~~~~lYlRY~f  336 (339)
T pfam05420       286 PGDSGSGLGYSLRAAVEYRLSPRWFLGGGLDIQRA------------------GDYAPSSALLYLRYAF  336 (339)
T ss_pred             CCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCC------------------CCCCCCCEEEEEEEEC
T ss_conf             68888855578889999994698899877800215------------------7888340899999960


No 35 
>pfam11854 DUF3374 Protein of unknown function (DUF3374). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 665 to 712 amino acids in length.
Probab=94.75  E-value=0.25  Score=25.88  Aligned_cols=58  Identities=21%  Similarity=0.242  Sum_probs=26.2

Q ss_pred             EEEEEEEECCCCEEEEEEEEEEECCCCEEE------CCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             873166732787688889888744873000------3666666442201234138999886209
Q gi|254781078|r  185 LGIGLDYMVNYDISLSASYRYIPHHIHSVN------NSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       185 vGaGVEYait~nwslraEY~Y~d~g~~~~~------~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +=+=.+|+++++.++|+.|+|-.|.....-      ..........+..+++.|.+++=++|+|
T Consensus       612 l~~~~~Y~lse~~~lrl~y~yEry~d~D~an~~~~d~i~~~~t~G~~n~dYnAh~v~ls~sY~l  675 (675)
T pfam11854       612 LKLYADYQLSESMSLRLDYRYERYSDTDYANDVTPDAIPNLLTLGDLNHNYNAHQVMLSFSYKL  675 (675)
T ss_pred             EEEEEEEEECCCCEEEEEEEEEEECCCCHHHCCCCCCCCCEEECCCCCCCCHHHEEEEEEEECC
T ss_conf             8898645516661567888999740454332357777644244044557713411336788509


No 36 
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.75  E-value=0.25  Score=25.87  Aligned_cols=32  Identities=6%  Similarity=-0.044  Sum_probs=26.5

Q ss_pred             CCCCCCEEEEEEEEEEEECCCCEEEEEEEEEE
Q ss_conf             45565303798731667327876888898887
Q gi|254781078|r  175 RFDGHGSSVVLGIGLDYMVNYDISLSASYRYI  206 (242)
Q Consensus       175 ~~d~t~~G~tvGaGVEYait~nwslraEY~Y~  206 (242)
                      .-+++-.||++.+.+||.|+++|.+++.-.|-
T Consensus      1089 g~s~~G~~y~l~a~~eyr~~~~~~~G~~~~~~ 1120 (1158)
T PRK11447       1089 GSSSQGFGYTARALIERRVTSNWFVGTAVDIQ 1120 (1158)
T ss_pred             CCCCCCCCEEEEEEEEEEECCCEEEECEEECC
T ss_conf             88888632367788999715867863105015


No 37 
>pfam11383 DUF3187 Protein of unknown function (DUF3187). This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=94.44  E-value=0.12  Score=27.71  Aligned_cols=87  Identities=17%  Similarity=0.183  Sum_probs=54.2

Q ss_pred             EEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCC
Q ss_conf             89998633144034444011457530110002366665555434556530379873166732787688889888744873
Q gi|254781078|r  132 VVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIH  211 (242)
Q Consensus       132 vr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~  211 (242)
                      +-..-+|..++--+|.+.|+.+-+-+             .+......-...|+.++|.||++++|-.+-+||.+..--.+
T Consensus       157 lQlNysy~~~~h~~~s~lG~t~r~~~-------------~~~~~l~~k~~t~s~~~gY~Y~l~~~H~ll~ey~~yqG~~~  223 (273)
T pfam11383       157 LQLNYSYQKDRHHFYSTLGVVFRNSD-------------EALNDLPYKKNTLSWAIGYEYRLTERHHLLIEYHWYQGAVE  223 (273)
T ss_pred             HEEEEEEECCCCEEEEEEEEEEECCC-------------CCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf             11300554377528889889983587-------------42366553441577772126752376146543343336426


Q ss_pred             EEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             0003666666442201234138999886209
Q gi|254781078|r  212 SVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                                 ..-+.+...|-+.+|-.|++
T Consensus       224 -----------~~~~fse~SnE~~LGYRY~~  243 (273)
T pfam11383       224 -----------GDTDFSEASNEAVLGYRYYM  243 (273)
T ss_pred             -----------CCCHHCCCCCEEEEEEEEEE
T ss_conf             -----------86100112413578665773


No 38 
>PRK12580 outer membrane protease; Reviewed
Probab=94.04  E-value=0.35  Score=25.04  Aligned_cols=61  Identities=13%  Similarity=0.178  Sum_probs=40.1

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCCE-----EECCCCCC---CCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             3798731667327876888898887448730-----00366666---6442201234138999886209
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHS-----VNNSNAKS---DVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~-----~~~~~~~~---~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      =|-+-+-+-|.+|||+.+.+|..|-.+-...     +|...+..   .-...-.+....++++||-|+|
T Consensus       244 yys~~~~agY~vtp~~klf~e~~~~ky~~~kgdT~i~d~~tG~s~~~~~d~AGi~n~n~tvs~GLkY~F  312 (312)
T PRK12580        244 YYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF  312 (312)
T ss_pred             EEEEEEECCEEECCCEEEEEEEEEEEEECCCCCCEEEECCCCCEEEECCCCCCCCCCCEEEEEEEEEEC
T ss_conf             189998402576798569999999877325686288866888365405774000243249999878869


No 39 
>COG3468 AidA Type V secretory pathway, adhesin AidA [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
Probab=93.70  E-value=0.23  Score=26.05  Aligned_cols=163  Identities=14%  Similarity=0.073  Sum_probs=97.9

Q ss_pred             CCCCCEEEECCCCCCEE-------EEEEEEEEEEEEEEEEECCCCCC-CCCCCCCCCCEEEEEEEEEEEEC--CEEEEEE
Q ss_conf             53211033037665300-------00574446441033222145556-66667667550479988655445--7799999
Q gi|254781078|r   38 NEADNNVEYQDDEYGIW-------SGNYVGLHISRLYETHPLADTIN-RKTYNSLLPNGLGIELGHNIQLE--DFVFGIN  107 (242)
Q Consensus        38 ~~~~~~~~~~~~~~~~W-------tG~YiG~~~G~~~~~~~~~d~~~-~~~~n~~~~~g~G~~~GYN~Q~~--~~V~GvE  107 (242)
                      ...+....|..-.|..|       +|+|+.....+.|..+.+..... ..+.....+...-+..||+++++  .|++-..
T Consensus       380 ~~~~~~~~y~~g~~~tw~~~~~~~~g~y~d~~~q~~~f~n~~~~~~~~~~~~~~~~g~~~slE~g~~~~l~~~~~~~~pq  459 (592)
T COG3468         380 LGADKTTGYSLGAYATWYASSAKATGAYLDGWAQYSWFDNGVNSLDNTGADGYLSSGYTASLEGGYRFLLGEASLTLQPQ  459 (592)
T ss_pred             CCCCCCCEECCCCEEEEEECCCCCCCEEEEEEHHHEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEECCCCCEEECCE
T ss_conf             44453132435526897504775533366000122131465324455555434553223101035113413350886770


Q ss_pred             EEEEEECCCCC----CCCCCCCCEEEEEEEEEEEEEECCE-------------EEEEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf             88674047776----4323101003679899986331440-------------344440114575301100023666655
Q gi|254781078|r  108 CHTTAAKDDST----FYRLKEKYFIYGDVVLKAGYSVDSL-------------LIYGMGGFGGAYVIDSSLEKVESDNSK  170 (242)
Q Consensus       108 ~d~~~~~~~~~----~~~~~~k~~~~Gsvr~r~Gya~~~~-------------l~Y~~gG~A~~~~~~~~~~~~~~~~~~  170 (242)
                      +++.+......    ....+...+-..++++|+|...+..             .||+..-.-. +.+....  +   ...
T Consensus       460 aq~~~~~v~~~~~~~~~~s~v~~~~~~~~~~rlg~~~~~~~~~~~~~~~~~~~~~~~~~n~~~-~~~~~~~--v---~~~  533 (592)
T COG3468         460 AQLTYQGVTVDDFTDSNGSEVSGDNGDSLQGRLGVALGYVTTVQGLDGLNAEEGPFVLQNWLH-EFGGDTE--V---NVD  533 (592)
T ss_pred             EEEEEEECCCCCCEECCCCEEECCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCEEEEEHHH-HCCCCCE--E---EEC
T ss_conf             799997636542220268676157785321112100341011033333344445157530133-3267737--9---965


Q ss_pred             CCCCCCCCCCEEEEEEEE-EEEECCCCEEEEEEEEEE
Q ss_conf             554345565303798731-667327876888898887
Q gi|254781078|r  171 NAKGRFDGHGSSVVLGIG-LDYMVNYDISLSASYRYI  206 (242)
Q Consensus       171 ~~~~~~d~t~~G~tvGaG-VEYait~nwslraEY~Y~  206 (242)
                      ......+..+.-+.++.| ++-.++.+.++.++-+|.
T Consensus       534 ~~~~~~~~~~~~~e~~~g~~~a~~~~~~~~~g~~~~~  570 (592)
T COG3468         534 GVAEGNDGDRNTAEGGVGGVAAKLNKQTSLGGAAAYQ  570 (592)
T ss_pred             CCEEECCCCEEEEECCCCCEEEEECCCCCCHHHHHHH
T ss_conf             7312214410244204554000112130402332233


No 40 
>pfam06082 DUF940 Bacterial putative lipoprotein (DUF940). This family consists of hypothetical bacterial proteins several of which are described as putative lipoproteins.
Probab=93.43  E-value=0.29  Score=25.51  Aligned_cols=21  Identities=29%  Similarity=0.321  Sum_probs=9.7

Q ss_pred             EEEEEEEECCCCEEEEEEEEE
Q ss_conf             873166732787688889888
Q gi|254781078|r  185 LGIGLDYMVNYDISLSASYRY  205 (242)
Q Consensus       185 vGaGVEYait~nwslraEY~Y  205 (242)
                      +-+..||.+++||++...++|
T Consensus       420 l~~~~ey~f~~nl~lsg~l~~  440 (661)
T pfam06082       420 LNANASYRLWPGLELSGSLRV  440 (661)
T ss_pred             EEEEEEEEECCCCEEEEEEEE
T ss_conf             755589998699099999965


No 41 
>pfam01278 Omptin Omptin family. The omptin family is a family of serine proteases.
Probab=93.34  E-value=0.49  Score=24.28  Aligned_cols=60  Identities=10%  Similarity=0.153  Sum_probs=40.8

Q ss_pred             EEEEEEEEEEEECCCCEEEEEEEEEEECCCC-----EEECCCCC-----CCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             0379873166732787688889888744873-----00036666-----66442201234138999886209
Q gi|254781078|r  181 SSVVLGIGLDYMVNYDISLSASYRYIPHHIH-----SVNNSNAK-----SDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       181 ~G~tvGaGVEYait~nwslraEY~Y~d~g~~-----~~~~~~~~-----~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      -=|-+-+-+-|.+|||+.+.+|..|-.+-..     -+|...+.     .+..  -.+....++++||-|+|
T Consensus       226 ~yys~~~~agY~vtp~~klf~e~~~~ky~~~kg~T~i~d~~tG~~~~~~~d~A--Gi~n~~~tvs~GLkY~F  295 (295)
T pfam01278       226 NYYSVAVNAGYYVTPNAKVFVEGSYSKVTNKKGDTSLYDIASGNTSGGEGDAA--GIENYNFTVTAGLKYRF  295 (295)
T ss_pred             CEEEEEEECCEEECCCEEEEEEEEEEEEECCCCCCEEEECCCCCEEECCCCCC--CCCCCCEEEEEEEEEEC
T ss_conf             41899984125767985699999998773256874788736886563267753--31322148998778869


No 42 
>pfam01617 Surface_Ag_2 Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.
Probab=92.75  E-value=0.6  Score=23.78  Aligned_cols=110  Identities=18%  Similarity=0.155  Sum_probs=69.2

Q ss_pred             CEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCC--------------------------CCCCCEEEEEEEEEEEEEE
Q ss_conf             50479988655445779999988674047776432--------------------------3101003679899986331
Q gi|254781078|r   87 NGLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYR--------------------------LKEKYFIYGDVVLKAGYSV  140 (242)
Q Consensus        87 ~g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~--------------------------~~~k~~~~Gsvr~r~Gya~  140 (242)
                      .++++-+||-  +++..+=+|+-+.--+.+.....                          ++.+.=-..++-..+-|.+
T Consensus       101 ~gfsGaiGYs--~~~~RiE~E~sye~Fdvk~~~~~~~~da~~y~al~r~~~~~~~~~~y~v~kN~gis~~S~m~N~CYD~  178 (279)
T pfam01617       101 TGFGGAIGYS--MDGPRVELEVSYERFDVKNQGNNYKNDAHKYAALTRDAAIAAADSKYVVLKNDGLTDISLMLNACYDI  178 (279)
T ss_pred             CEEEEEEEEC--CCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEEEEEC
T ss_conf             2068999681--49988999987658335899876146615899986002666667746999967788665799999962


Q ss_pred             --C--CEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEE-CCCCEEE
Q ss_conf             --4--403444401145753011000236666555543455653037987316673278768888988874-4873000
Q gi|254781078|r  141 --D--SLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIP-HHIHSVN  214 (242)
Q Consensus       141 --~--~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d-~g~~~~~  214 (242)
                        .  ++.||+-+|+..--++               ..+....+..|-.=+|+.|.++|++++-++-.|.. .|++ +.
T Consensus       179 ~~~~~~i~PY~C~GiG~d~i~---------------~~~~~~~K~aYq~KlGvsY~ls~~i~lF~~gyYHkV~gn~-F~  241 (279)
T pfam01617       179 AHEGIPVSPYVCAGVGADLIS---------------VFGAINPKFSYQGKAGLSYPITPEISLFAGGHYHKVIGNE-FD  241 (279)
T ss_pred             CCCCCCCCCEEEEECCHHHHH---------------HCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCC-CC
T ss_conf             238862044787743774632---------------3267533589999523788738885999988998731775-57


No 43 
>pfam07585 DUF1551 Protein of unknown function (DUF1551). A family of proteins identified in Rhodopirellula baltica.
Probab=92.17  E-value=0.72  Score=23.36  Aligned_cols=122  Identities=16%  Similarity=0.216  Sum_probs=64.1

Q ss_pred             CCCCCCEEEEE-EEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCC----C-CCC-------CCCCCCCCCCCEEEE--E
Q ss_conf             23101003679-8999863314403444401145753011000236----6-665-------555434556530379--8
Q gi|254781078|r  121 RLKEKYFIYGD-VVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVE----S-DNS-------KNAKGRFDGHGSSVV--L  185 (242)
Q Consensus       121 ~~~~k~~~~Gs-vr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~~----~-~~~-------~~~~~~~d~t~~G~t--v  185 (242)
                      ..+.+.+.+|- +-.|.-+-.+++-+-+.+-+|++.++.+......    . ...       .......+..+.+++  +
T Consensus       189 ~~~t~N~f~G~Q~G~~~~~~~~r~sl~~~~Kvalg~n~~~~~~~g~~~~~~~~~~~ggl~~~~tn~~~~~~~~fa~v~e~  268 (338)
T pfam07585       189 SFSTENRFYGAQLGLRLTFNEGRWSLDALTKVGVGGNRQTQTILGSTTLTAPDPTDGGLLAQSTNIGTAARDRFAFVPEL  268 (338)
T ss_pred             EEEEEEEEECEEEEEEEEEECCCEEEEEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCEEEECCCCCEEECCEEEEEEEC
T ss_conf             88764011150667899984386899888889984115889983025203666557725751256542611308998424


Q ss_pred             EEEEEEECCCCEEEEEEEEEEECCCCEE-----ECC-C-CC------CCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             7316673278768888988874487300-----036-6-66------66442201234138999886209
Q gi|254781078|r  186 GIGLDYMVNYDISLSASYRYIPHHIHSV-----NNS-N-AK------SDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       186 GaGVEYait~nwslraEY~Y~d~g~~~~-----~~~-~-~~------~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +.-+-|.++++|++++.|+++..+....     |.. + +.      +......-+.-.|=+.+|+.|+|
T Consensus       269 ~~~~~y~~t~~~~l~~GY~~l~~s~V~ra~dqid~~~~~~~~~~~~~p~~~~~~s~~~~~Gl~~G~e~~f  338 (338)
T pfam07585       269 GLNLGYQLTPNLSLTVGYSFLYLSDVALAGDQIDRNVNTANLTGAVRPAFVDSNSSLLAHGLTFGGEYSF  338 (338)
T ss_pred             CEEEEEEECCCEEEEEEEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEEEEC
T ss_conf             0799999648789998678999814365212015566888887766762343468759971587689839


No 44 
>COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown]
Probab=91.81  E-value=0.79  Score=23.13  Aligned_cols=46  Identities=20%  Similarity=0.199  Sum_probs=28.9

Q ss_pred             CCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             5303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  179 HGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       179 t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      -|..-.|++|+.+.++||.++.+-|...- +.+                 .-.+.+++++.++|
T Consensus       532 srdaa~i~~G~~l~~s~n~sl~~~y~~~f-g~r-----------------~~~~s~~~~l~~~F  577 (577)
T COG4625         532 SRDAALLGLGAVLPVSPNAGLWARYEGQF-GDR-----------------KVDDSGGLRLQVRF  577 (577)
T ss_pred             CCCCEEEECCEEEEECCCEEEEEEEEEEE-CCC-----------------EECCCCCEEEEECC
T ss_conf             66424775451686156326888776796-362-----------------45145433457439


No 45 
>PRK09980 ompL outer membrane porin L; Provisional
Probab=91.16  E-value=0.93  Score=22.74  Aligned_cols=50  Identities=10%  Similarity=0.137  Sum_probs=36.2

Q ss_pred             CCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             5303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  179 HGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       179 t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      ..+-|-.-+-+-|.++++|+--+|++|+|-...              +.+-+.-..||||.|.|
T Consensus       181 Kk~~~E~n~~~~Yk~~~~w~PY~E~~~ld~~~~--------------~~~r~q~r~RVGv~y~F  230 (230)
T PRK09980        181 TKHHWEITNTFRYRINEHWLPYFELRWLDRNVG--------------PYHREQNQIRIGAKYFF  230 (230)
T ss_pred             CCHHHHEEEEEEEECCCCCCCEEEEEECCCCCC--------------CCCCCEEEEEEEEEEEC
T ss_conf             640443102688842896243189874223567--------------67771357999888629


No 46 
>PRK10993 outer membrane protease; Reviewed
Probab=91.14  E-value=0.94  Score=22.73  Aligned_cols=61  Identities=13%  Similarity=0.149  Sum_probs=40.6

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCC-----EEECCCCCC--CCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             379873166732787688889888744873-----000366666--6442201234138999886209
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIH-----SVNNSNAKS--DVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~-----~~~~~~~~~--~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      =|-+-+-+-|.+|||+++.+|..|..+-..     .+|...+..  .-...-.+.+..++++||-|+|
T Consensus       244 y~s~~~~agY~vtp~~kl~~e~~~~ky~~~kg~T~i~d~~tG~~~~~~d~AGi~n~~~tvs~GLkY~F  311 (311)
T PRK10993        244 YYSASINAGYYVTPNAKLFVEGAYNKYFEGKGDTQIYDHATGESSYGKDAAGIENQNFTVTAGLKYRF  311 (311)
T ss_pred             EEEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCEEEECCCCCEEECCCCCCCCCCCEEEEEEEEEEC
T ss_conf             28999810046279815999999999851568747874478716614764220332159998777869


No 47 
>PRK10159 outer membrane phosphoporin protein E; Provisional
Probab=90.71  E-value=0.85  Score=22.96  Aligned_cols=47  Identities=19%  Similarity=0.413  Sum_probs=33.2

Q ss_pred             EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             98731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .+-.|++|.|++|+++-+||+.-.+....     .      ... ..-..+.+||+|.|
T Consensus       305 ~~~~ga~Y~Fnkn~~~y~~Yk~n~ld~~~-----~------~~~-~~dd~~~~GlrY~F  351 (351)
T PRK10159        305 YIDVGATYYFNKNMSAFVDYKINQLDSDN-----K------LNI-NNDDIVAVGMTYQF  351 (351)
T ss_pred             EEEEEEEEEECCCCEEEEEEEECCCCCCC-----C------CCC-CCCCEEEEEEEEEC
T ss_conf             69986799957981589988601557755-----5------688-76788999618859


No 48 
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=88.78  E-value=1.5  Score=21.64  Aligned_cols=59  Identities=19%  Similarity=0.183  Sum_probs=27.2

Q ss_pred             EEEEEEEEECCCCEEEEEEEEEEECCCCEEE-------CCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             9873166732787688889888744873000-------3666666442201234138999886209
Q gi|254781078|r  184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVN-------NSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~-------~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .|=+=.+|++++++++|+.|+|-.|-....-       ...........+.+++.|.+.+=++|+|
T Consensus       584 ~l~~~~~Y~ls~~~~lrl~y~yE~Y~d~D~~~~~~~~d~i~~~~t~G~~n~nYnAh~v~ls~sY~f  649 (649)
T TIGR03509       584 RLKLYGKYQLSKSSSLRLDYRYERYSDNDYAYNNTAYDTIATVTTLGDQNPNYNAHYLGVSYSYLF  649 (649)
T ss_pred             EEEEEEEEEECCCCEEEEEEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC
T ss_conf             998886576266717887788999741642104767665434232454788864269999999629


No 49 
>TIGR03016 pepcterm_hypo_1 uncharacterized protein, PEP-CTERM system associated. Members of this protein family are found predominantly in exopolysaccharide biosynthesis operons marked by the presence of the EpsH-family putative exosortase and presence in the genome of the PEP-CTERM protein sorting signal. Members of this family may be distantly related to the EpsL family modeled in TIGR03014.
Probab=88.38  E-value=1.6  Score=21.49  Aligned_cols=50  Identities=22%  Similarity=0.327  Sum_probs=38.0

Q ss_pred             EEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             03798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  181 SSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       181 ~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .=|.+.+|+-|.|+++.++.+-|||.+...      +    ...  .+++.+.|.++|++.|
T Consensus       382 ~~~~~~~gl~y~l~~~~~~~l~Yry~~rdS------~----~~~--~dy~~N~v~~~l~~~F  431 (431)
T TIGR03016       382 DRTSVSAGLSYQLGENTTGSLTYRYQERDS------N----FEA--TDYTENRLMAEVTMTF  431 (431)
T ss_pred             EEEEEEEEEEEEECCCEEEEEEEEEEECCC------C----CCC--CCHHHHEEEEEEEEEC
T ss_conf             699999989999638659999999997047------8----766--6645512157787409


No 50 
>PRK10002 outer membrane protein F; Provisional
Probab=86.47  E-value=2  Score=20.95  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             EEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             8731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  185 LGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       185 vGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +=.|++|.|++|++.-+||+.-.+...     +.    ..  .. .-..+.+||.|.|
T Consensus       317 ~~lga~Y~FnkN~~ty~~Yk~NllD~~-----~~----~~--~~-~DD~~avGlrY~F  362 (362)
T PRK10002        317 FEVGATYYFNKNMSTYVDYIINQIDSD-----NK----LG--VG-SDDTVAVGIVYQF  362 (362)
T ss_pred             EEEEEEEEECCCEEEEEEEEHHCCCCC-----CC----CC--CC-CCCEEEEEEEEEC
T ss_conf             998759995587026876600056765-----55----68--87-7787999718829


No 51 
>COG3713 OmpV Outer membrane protein V [Cell envelope biogenesis, outer membrane]
Probab=86.24  E-value=2.1  Score=20.79  Aligned_cols=96  Identities=15%  Similarity=0.190  Sum_probs=55.8

Q ss_pred             EECCEEEEEEEEEEEEEEECCCCCCCC--CCCCCCCCCCCC--CCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEE
Q ss_conf             314403444401145753011000236--666555543455--6530379873166732787688889888744873000
Q gi|254781078|r  139 SVDSLLIYGMGGFGGAYVIDSSLEKVE--SDNSKNAKGRFD--GHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVN  214 (242)
Q Consensus       139 a~~~~l~Y~~gG~A~~~~~~~~~~~~~--~~~~~~~~~~~d--~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~  214 (242)
                      ..+++.+=...|+.|+.-+....-+--  .+...+.....+  .-.+-.-+++=++|+||+||++.+--.|..+....-+
T Consensus       159 ~~~~~~ispg~g~s~~s~~Y~~yYfGVs~~esa~Sgl~~Y~p~~g~~s~~l~ls~~y~~t~~w~~~~~~~~~RL~gdaad  238 (258)
T COG3713         159 LIGRLSLSPGPGVSWASSKYNDYYFGVSAAESARSGLASYNPGGGAKSPGLGLSATYMITDHWSVGGTAGYSRLSGDAAD  238 (258)
T ss_pred             CCCCEEECCCCCEEEECCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEECCCCCCC
T ss_conf             05978985477327712233420205288997304777407998843467237999970687799988871310331014


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             3666666442201234138999886209
Q gi|254781078|r  215 NSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       215 ~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      -+        +-.+.+.-++.+|+.|||
T Consensus       239 SP--------iV~~~~q~~~~~~v~YrF  258 (258)
T COG3713         239 SP--------IVDRRNQFSVGTGVTYRF  258 (258)
T ss_pred             CC--------CEECCCCEEEEEEEEEEC
T ss_conf             97--------466156358998899859


No 52 
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=85.91  E-value=2.2  Score=20.69  Aligned_cols=54  Identities=15%  Similarity=0.189  Sum_probs=23.0

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf             379873166732787688889888744873000366666644220123413899988620
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMH  241 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~  241 (242)
                      ...+-.+..+.+|++++++++..|-.   ..+.  +. +-+...+.+.+.+.+.+++.|.
T Consensus       290 ~~~~~l~~~w~~T~kv~~~~~~~y~~---rdY~--G~-~~~~~~~R~D~~~~~~l~~~Y~  343 (381)
T TIGR03014       290 NRGTSIGPTWQATSKIAVRGRLDYEE---RDFE--GD-PLVGPPARSDRTRSGSLSLDWS  343 (381)
T ss_pred             EEEEEEEEEEEEEEEEEEEEEEEEEE---CCCC--CC-CCCCCCCCCCCEEEEEEEEEEE
T ss_conf             53388421052112399988889984---1235--86-4567667543248877899983


No 53 
>COG4571 OmpT Outer membrane protease [Cell envelope biogenesis, outer membrane]
Probab=84.01  E-value=2.7  Score=20.19  Aligned_cols=150  Identities=11%  Similarity=0.120  Sum_probs=71.5

Q ss_pred             EEEEEEEEEEC-CEEEEEEE-----EEEEECCCCCC--CCCCCCCEEEEEEEEEEEEEECCEEEEEEEEEEEEEEEC---
Q ss_conf             79988655445-77999998-----86740477764--323101003679899986331440344440114575301---
Q gi|254781078|r   90 GIELGHNIQLE-DFVFGINC-----HTTAAKDDSTF--YRLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFGGAYVID---  158 (242)
Q Consensus        90 G~~~GYN~Q~~-~~V~GvE~-----d~~~~~~~~~~--~~~~~k~~~~Gsvr~r~Gya~~~~l~Y~~gG~A~~~~~~---  158 (242)
                      -+.++-.+|.+ +..+|+.+     +++|.--.+..  .+...-.+..+.+|+ |||.--=-|||+  |+|..+..+   
T Consensus       136 dlnlk~wlL~~~ny~~gv~~GyqeT~~swTA~GGsy~Y~~G~~ig~fP~g~r~-IgY~Qrf~m~yi--Glag~Yr~~~~e  212 (314)
T COG4571         136 DLNLKGWLLQDPNYRLGVTAGYQETRVSWTAYGGSYIYSNGFYIGNFPNGVRA-IGYKQRFKMPYI--GLAGSYRYNDFE  212 (314)
T ss_pred             EEEECEEEECCCCEEECCCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCEE-EEECCCCCCEEE--ECCCEEEEEEEE
T ss_conf             22204034038761212323503645679970661684077461448998256-653001565055--012317886544


Q ss_pred             -------CCCCCCC---CCCCCCCC-CCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCC-----EEECCC--CCC
Q ss_conf             -------1000236---66655554-34556530379873166732787688889888744873-----000366--666
Q gi|254781078|r  159 -------SSLEKVE---SDNSKNAK-GRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIH-----SVNNSN--AKS  220 (242)
Q Consensus       159 -------~~~~~~~---~~~~~~~~-~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~-----~~~~~~--~~~  220 (242)
                             +.+....   .+.-..-. .+..+..-=|.++.-+-|-+|+|-++-+|--|..+...     .+|-.+  +..
T Consensus       213 ~~~~~Kys~wv~a~~~D~Hymr~ltfrd~~~~s~yy~~~i~~GYy~t~nak~fve~ay~k~~~~kG~tqt~d~~g~t~~~  292 (314)
T COG4571         213 FGALFKYSDWVNAHDNDEHYMRDLTFRDKTKNSRYYSVVINAGYYVTENAKVFVEGAYNKVTEGKGGTQTYDKAGDTSDY  292 (314)
T ss_pred             EEEEEEECCEEECCCCHHHHHHCCEEECCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEECCCCCCCC
T ss_conf             30499505356647760345423323204578834899873147986783499987777775056872567516863666


Q ss_pred             CCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             6442201234138999886209
Q gi|254781078|r  221 DVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       221 ~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .-...-.+....+|++||-|+|
T Consensus       293 ~~d~aGi~~~~~tvt~Glky~F  314 (314)
T COG4571         293 GGDAAGIENYNYTVTAGLKYRF  314 (314)
T ss_pred             CCCCCCCCCCCEEEEEEEEECC
T ss_conf             7753333333148998777619


No 54 
>PRK13484 putative iron-regulated outer membrane virulence protein; Provisional
Probab=80.73  E-value=3.7  Score=19.49  Aligned_cols=53  Identities=15%  Similarity=0.161  Sum_probs=25.7

Q ss_pred             EEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCC-CCCEEEEEEEEEEEC
Q ss_conf             67327876888898887448730003666666442201-234138999886209
Q gi|254781078|r  190 DYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDR-KGNAHIASLGINMHF  242 (242)
Q Consensus       190 EYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~-~~~~h~v~~GinY~F  242 (242)
                      .+.++++|++.+-|-|+|-..++-+.........+-.. ..-.|++.+.+.|.|
T Consensus       540 ~~~~~~~~~l~~~yty~da~~~~~~~~~~g~~~~g~~~~~~P~~~~~~~~~~~~  593 (682)
T PRK13484        540 QIPVYDKWHVSANYTFTDSRRKSDDESLNGKSLKGEPLERTPRHAANAKLEWDY  593 (682)
T ss_pred             EEECCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf             997369889999999986574247643346545688335687607899999997


No 55 
>pfam09381 Porin_OmpG Outer membrane protein G (OmpG). Porins are channel proteins in the outer membrane of gram negative bacteria which mediate the uptake of molecules required for growth and survival. Escherichia coli OmpG forms a 14 stranded beta-barrel and in contrast to most porins, appears to function as a monomer. The central pore of OmpG is wider than other E. coli porins and it is speculated that it may form a non-specific channel for the transport of larger oligosaccharides.
Probab=80.54  E-value=3.3  Score=19.76  Aligned_cols=46  Identities=22%  Similarity=0.351  Sum_probs=34.4

Q ss_pred             EEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             98731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  184 VLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       184 tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .+|.=++|.+.+.+|+-.||-|-.- .  -|.+          ....+|-.-+||||.|
T Consensus       235 RlGl~~~~~~~~glsmtLeYAyE~q-~--hd~~----------~~dkFHyaGvG~~YsF  280 (280)
T pfam09381       235 RVGLFYGYDFQNGLSVSLEYAFEWQ-D--HDEG----------DSDKFHYAGVGVNYSF  280 (280)
T ss_pred             CEEEEEEECCCCCCEEEEEEEEEEC-C--CCCC----------CCCCEEECCCCEEECC
T ss_conf             0136785316887377652332202-0--4568----------7442033030035319


No 56 
>PRK13486 bifunctional enterobactin receptor/adhesin protein; Provisional
Probab=70.76  E-value=7  Score=17.96  Aligned_cols=43  Identities=19%  Similarity=0.319  Sum_probs=22.3

Q ss_pred             CCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             7876888898887448730003666666442201234138999886209
Q gi|254781078|r  194 NYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       194 t~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +++|++.+.|-|.+-..+.-+....     .++ ..-.|.++++++|+|
T Consensus       538 ~~~~~l~~~yty~~~~~~d~~~~g~-----~l~-~~P~~~~~~~~~y~~  580 (696)
T PRK13486        538 SEDVTLSLNYTWTRSEQRDGDNKGA-----PLS-YTPEHMVNAKLNWQI  580 (696)
T ss_pred             CCCEEEEEEEEEEEEEECCCCCCCC-----CCC-CCCCCEEEEEEEEEE
T ss_conf             1678999999998314226765686-----266-788103899988886


No 57 
>PRK13483 enterobactin receptor protein; Provisional
Probab=68.06  E-value=8  Score=17.63  Aligned_cols=19  Identities=26%  Similarity=0.625  Sum_probs=11.2

Q ss_pred             EEECCCCEEEEEEEEEEEC
Q ss_conf             6732787688889888744
Q gi|254781078|r  190 DYMVNYDISLSASYRYIPH  208 (242)
Q Consensus       190 EYait~nwslraEY~Y~d~  208 (242)
                      .+.++++|++.+-|-|+|-
T Consensus       533 ~~~~~~~~~l~~~yty~d~  551 (663)
T PRK13483        533 SYPITSNLSLTGNYTYTDS  551 (663)
T ss_pred             EEEECCCEEEEEEEEEEEE
T ss_conf             9982799899999999923


No 58 
>COG5571 Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion [Cell motility and secretion]
Probab=65.74  E-value=2.1  Score=20.79  Aligned_cols=135  Identities=15%  Similarity=0.147  Sum_probs=71.2

Q ss_pred             EEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCC--------CCEEEEEEEEEEEEEE----CCEEEEEEEEEEEEE
Q ss_conf             0479988655445779999988674047776432310--------1003679899986331----440344440114575
Q gi|254781078|r   88 GLGIELGHNIQLEDFVFGINCHTTAAKDDSTFYRLKE--------KYFIYGDVVLKAGYSV----DSLLIYGMGGFGGAY  155 (242)
Q Consensus        88 g~G~~~GYN~Q~~~~V~GvE~d~~~~~~~~~~~~~~~--------k~~~~Gsvr~r~Gya~----~~~l~Y~~gG~A~~~  155 (242)
                      +.++.+||+|-++.++.|.-++..+...+-..++...        .-.-.-++++++|+-+    ..+-||+.--+-- +
T Consensus        90 t~~L~~Gyef~~~~l~tGpvA~L~~~~t~v~~y~E~~~ssTal~f~dq~~~S~~sslGwrlr~~~~~~~Pyaqi~y~~-e  168 (239)
T COG5571          90 TARLSAGYEFPFGELRTGPVAGLHYDKTTVSGYNEQNASSTALGFTDQLWHSLVSSLGWRLRLRLADLQPYAQIRYVR-E  168 (239)
T ss_pred             HHHCCCCCCCCCCCEEEECCHHCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCEEEEEHHH-H
T ss_conf             221013355432212320100000044300121224664110156651156653035467732224444014565787-6


Q ss_pred             EECCCCCCCCCC---CCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEE
Q ss_conf             301100023666---65555434556530379873166732787688889888744873000366666644220123413
Q gi|254781078|r  156 VIDSSLEKVESD---NSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAH  232 (242)
Q Consensus       156 ~~~~~~~~~~~~---~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h  232 (242)
                      ...+........   .........|++-.  -+=+|++..+++++..-++--=.+                 ...+.+..
T Consensus       169 f~~d~~~aqagL~~m~~~~~~~~qd~nw~--~i~~Ga~~~l~~~i~~~a~~~q~~-----------------~~t~~n~~  229 (239)
T COG5571         169 FGDDIWKAQAGLSRMTATNVLPSQDKNWV--DITAGADFLLNSSIGAFAAASQRE-----------------NSTENNQY  229 (239)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCHH--HEEEEEEECCCCHHHHHHHHHHHH-----------------CCCCCCCC
T ss_conf             50123656410246600243566676641--304410122341068998764443-----------------05666631


Q ss_pred             EEEEEEEEEC
Q ss_conf             8999886209
Q gi|254781078|r  233 IASLGINMHF  242 (242)
Q Consensus       233 ~v~~GinY~F  242 (242)
                      .+++|+|-+|
T Consensus       230 ~ytLgvs~~F  239 (239)
T COG5571         230 LYTLGVSARF  239 (239)
T ss_pred             EEEEEEECCC
T ss_conf             0577530239


No 59 
>pfam04338 DUF481 Protein of unknown function, DUF481. This family includes several proteins of uncharacterized function.
Probab=65.41  E-value=9.1  Score=17.34  Aligned_cols=49  Identities=18%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             3798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  182 SVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       182 G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      =+..=.|++..|+++|++++.|.+--...       .+     .+.+..-...+++|.|.|
T Consensus       162 ~~~~~~~l~~~l~~~lsl~~~~~~~yds~-------P~-----~~~~~~D~~~~~~l~y~f  210 (210)
T pfam04338       162 RLNSETGLTVKLTDNLSLKLSYEVDYNSD-------PP-----AGKKKTDTTTSVSLGYSF  210 (210)
T ss_pred             EEEEEEEEEEEEECEEEEEEEEEEEECCC-------CC-----CCCCCCCEEEEEEEEEEC
T ss_conf             99999999998301079999999999377-------99-----998874539999999989


No 60 
>pfam06727 DUF1207 Protein of unknown function (DUF1207). This family consists of a number of hypothetical bacterial proteins of around 410 residues in length which seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=64.65  E-value=9.4  Score=17.25  Aligned_cols=99  Identities=16%  Similarity=0.144  Sum_probs=56.5

Q ss_pred             EEEEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCC----C-C-----CC----CC-------CCCCCCCCCEEEEEEE
Q ss_conf             6798999863314403444401145753011000236----6-6-----65----55-------5434556530379873
Q gi|254781078|r  129 YGDVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVE----S-D-----NS----KN-------AKGRFDGHGSSVVLGI  187 (242)
Q Consensus       129 ~Gsvr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~~----~-~-----~~----~~-------~~~~~d~t~~G~tvGa  187 (242)
                      +-.+-.|+.|.++.+-+|+.+|.-.-+-  ......-    . +     ..    ..       -..+..++...++..+
T Consensus       214 ~E~~Dl~lS~e~p~iRvYGG~G~i~~rd--~s~~~p~~~e~GaElRsp~gl~~l~~rpv~A~d~k~~eq~~~~~d~s~~~  291 (337)
T pfam06727       214 YEGVDLRLSYELPQIRVYGGGGGIFSRD--PSPIKPWYIEYGAELRSPWGLDNLHARPIFAMDFKNWEQQKWNIDQSYRA  291 (337)
T ss_pred             CHHEEEEEEEECCCEEEEECCEEEEECC--CCCCCCEEEECCCEEECCCCCCCCCCEEEEEEEEEEHHHHCCCCCCEEEE
T ss_conf             0010179976647579981401689548--77788705761701107666786343068999752345414586724898


Q ss_pred             EEEEECC----CCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             1667327----876888898887448730003666666442201234138999886209
Q gi|254781078|r  188 GLDYMVN----YDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       188 GVEYait----~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      |+|++-.    .+|.+-+||--            +.+ .++.=.+...+-.-+|+.|||
T Consensus       292 G~E~~~~q~~gRk~~~llEY~~------------G~S-p~GQF~re~~~Y~Gigl~Ygf  337 (337)
T pfam06727       292 GMEWAKFQAFGRKLRLLLEYHD------------GFS-PTGQFFREKTDYLGFGLHYGF  337 (337)
T ss_pred             EEEEEHEECCCCEEEEEEEECC------------CCC-CCCCEEEEECCEEEEEEEECC
T ss_conf             6676210043713677662004------------999-876057631327885358159


No 61 
>pfam09411 PagL Lipid A 3-O-deacylase (PagL). PagL is an outer membrane protein with lipid A 3-O-deacylase activity. It forms an 8 stranded beta barrel structure.
Probab=64.06  E-value=9.6  Score=17.19  Aligned_cols=87  Identities=20%  Similarity=0.189  Sum_probs=44.2

Q ss_pred             EEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCC
Q ss_conf             98999863314403444401145753011000236666555543455653037987316673278768888988874487
Q gi|254781078|r  131 DVVLKAGYSVDSLLIYGMGGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHI  210 (242)
Q Consensus       131 svr~r~Gya~~~~l~Y~~gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~  210 (242)
                      +...|....-.+.-+|+-+|++..........    +       +.=.++.=+...+|+-|.+.+++  +++|||..+.+
T Consensus        52 ~p~~~~~~~~~~~~~f~E~GiG~~~~s~~~~~----~-------~~lg~~~~F~~~~g~g~~~~~~~--~~~~~~~H~SN  118 (139)
T pfam09411        52 SPVVRLEFTGGSFKPFVEAGIGVALLSRTRDE----D-------KDLGTRFQFRDQLGAGYQFGGRP--RVGYRYQHYSN  118 (139)
T ss_pred             EEEEEEEECCCCCCEEEEEEEEEEEECCCCCC----C-------CCCCCEEEEECCEEEEEEECCCC--EEEEEEEEECC
T ss_conf             79999973688747389987654886152138----9-------86666087200188899976886--58999999517


Q ss_pred             CEEECCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             30003666666442201234138999886
Q gi|254781078|r  211 HSVNNSNAKSDVERVDRKGNAHIASLGIN  239 (242)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~h~v~~Gin  239 (242)
                      ..+...|         ...|.+.++++.+
T Consensus       119 a~i~~~N---------~G~~~~~l~~~~~  138 (139)
T pfam09411       119 AGIKDPN---------PGLNSVGLRLGYS  138 (139)
T ss_pred             CCCCCCC---------CCCCEEEEEEEEE
T ss_conf             8879998---------8901587999843


No 62 
>COG4771 FepA Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]
Probab=63.84  E-value=9.7  Score=17.17  Aligned_cols=59  Identities=15%  Similarity=0.200  Sum_probs=33.6

Q ss_pred             EE-EEEEEEEEECCCCEEEEEEEEEEECCCCEEE-CCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             37-9873166732787688889888744873000-3666666442201234138999886209
Q gi|254781078|r  182 SV-VLGIGLDYMVNYDISLSASYRYIPHHIHSVN-NSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       182 G~-tvGaGVEYait~nwslraEY~Y~d~g~~~~~-~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      .| +++.|+-|++|.||+|++--.=  +..|.+. ..+-........+-.+--..-++|+|+|
T Consensus       639 ~Yti~~~ga~y~~tkn~sL~agV~N--LfDK~l~~~~~~a~~~g~~~y~epGRry~~s~~~~F  699 (699)
T COG4771         639 AYTIVDLGATYDVTKNVSLNAGVYN--LFDKRLSRDGNYAFGAGAYTYNEPGRRYYMSLNYSF  699 (699)
T ss_pred             CEEEEECCEEEEECCCEEEEHHHHH--HCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf             6489842414663234266010122--044221235543334454322367725899853049


No 63 
>PRK10177 hypothetical protein; Provisional
Probab=60.96  E-value=11  Score=16.87  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=18.2

Q ss_pred             EEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf             0379873166732787688889888
Q gi|254781078|r  181 SSVVLGIGLDYMVNYDISLSASYRY  205 (242)
Q Consensus       181 ~G~tvGaGVEYait~nwslraEY~Y  205 (242)
                      .=..+-+||.|-=-|=+++++|++-
T Consensus       252 nP~A~T~GlnYTPvPLvT~~a~~k~  276 (452)
T PRK10177        252 NPVALSLGLNYTPVPLVTVTAQHKQ  276 (452)
T ss_pred             CCHHEEECCCCCCCCCEEEECCEEC
T ss_conf             9641781145405212896100021


No 64 
>pfam06178 KdgM Oligogalacturonate-specific porin protein (KdgM). This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria Erwinia chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric.
Probab=59.55  E-value=12  Score=16.73  Aligned_cols=51  Identities=14%  Similarity=0.237  Sum_probs=35.6

Q ss_pred             CCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             565303798731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  177 DGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       177 d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +.-..-|..-.-++|.+.++|+--+|+.+++-.+.             .|.  ..-..||||.|.|
T Consensus       168 d~k~~~~e~n~~~~Yk~~~~W~PyvEvg~v~~~~~-------------~d~--rq~RyRVGv~Y~F  218 (218)
T pfam06178       168 DGKKTNWEYNVKLAYKIDKHWTPYVEVGNVDVNNN-------------TDE--RQTRYRVGVQYSF  218 (218)
T ss_pred             CCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCC-------------CCC--CEEEEEEEEEEEC
T ss_conf             79885168889999982898230499984256788-------------866--2767998889769


No 65 
>PRK10554 outer membrane porin protein C; Provisional
Probab=55.21  E-value=14  Score=16.32  Aligned_cols=49  Identities=18%  Similarity=0.332  Sum_probs=33.3

Q ss_pred             EEEEEEEECCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             8731667327876888898887448730003666666442201234138999886209
Q gi|254781078|r  185 LGIGLDYMVNYDISLSASYRYIPHHIHSVNNSNAKSDVERVDRKGNAHIASLGINMHF  242 (242)
Q Consensus       185 vGaGVEYait~nwslraEY~Y~d~g~~~~~~~~~~~~~~~~~~~~~~h~v~~GinY~F  242 (242)
                      +=.|++|.|++|+++-+||+.-......+....      .   ...-..+.+||.|.|
T Consensus       325 ~~iga~Y~FnkN~~~y~~Yk~NllD~~~~~~~~------~---~~~DD~~alGlrY~F  373 (373)
T PRK10554        325 VDVGATYYFNKNMSTYVDYKINLLDDNDFTRDA------G---INTDDIVALGLVYQF  373 (373)
T ss_pred             EEEEEEEEECCCEEEEEEEEEECCCCCCCCCCC------C---CCCCCEEEEEEEEEC
T ss_conf             897679997787216888875136765310003------6---776776999628819


No 66 
>pfam11336 DUF3138 Protein of unknown function (DUF3138). This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=55.01  E-value=14  Score=16.30  Aligned_cols=41  Identities=10%  Similarity=0.041  Sum_probs=31.6

Q ss_pred             CCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCC
Q ss_conf             56530379873166732787688889888744873000366
Q gi|254781078|r  177 DGHGSSVVLGIGLDYMVNYDISLSASYRYIPHHIHSVNNSN  217 (242)
Q Consensus       177 d~t~~G~tvGaGVEYait~nwslraEY~Y~d~g~~~~~~~~  217 (242)
                      .+-..-+.+-+++-|..|+++.+|+||||-+-..+.+-..+
T Consensus       456 cKGA~R~a~~~dLlfypTqq~TvK~EYRhDwA~~~VFl~~d  496 (514)
T pfam11336       456 CKGANRQAITADLLFYPTQQITVKVEYRHDWANNKVFLRND  496 (514)
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEECCC
T ss_conf             55524554220031044531589999851333464577158


No 67 
>PRK13513 putative outer membrane receptor; Provisional
Probab=54.29  E-value=14  Score=16.23  Aligned_cols=18  Identities=22%  Similarity=0.458  Sum_probs=9.0

Q ss_pred             EECCCCEEEEEEEEEEEC
Q ss_conf             732787688889888744
Q gi|254781078|r  191 YMVNYDISLSASYRYIPH  208 (242)
Q Consensus       191 Yait~nwslraEY~Y~d~  208 (242)
                      +.++++|++.+-|-|+|-
T Consensus       532 ~~~~~~~~l~~~yty~~~  549 (660)
T PRK13513        532 WDINQAWSLATNYTFTQS  549 (660)
T ss_pred             EEECCCEEEEEEEEEEEE
T ss_conf             985599899999999942


No 68 
>pfam12094 DUF3570 Protein of unknown function (DUF3570). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 396 to 444 amino acids in length.
Probab=47.01  E-value=19  Score=15.57  Aligned_cols=29  Identities=21%  Similarity=0.311  Sum_probs=13.4

Q ss_pred             CCCEEEEEEEEEEEECCCCEEEEEEEEEE
Q ss_conf             65303798731667327876888898887
Q gi|254781078|r  178 GHGSSVVLGIGLDYMVNYDISLSASYRYI  206 (242)
Q Consensus       178 ~t~~G~tvGaGVEYait~nwslraEY~Y~  206 (242)
                      .+|.-..+++..-|.+.++.+++.+|||+
T Consensus       258 d~R~k~~~~~r~~~~l~~~~~l~~~YRyy  286 (407)
T pfam12094       258 DTRTKQAVYLRAKYYLPDRAALRFSYRYY  286 (407)
T ss_pred             CHHHHHHHHHHEEEECCCCCEEEEEEEEE
T ss_conf             62332010102202058772567877888


No 69 
>pfam09982 DUF2219 Uncharacterized protein conserved in bacteria (DUF2219). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=44.68  E-value=21  Score=15.37  Aligned_cols=53  Identities=17%  Similarity=0.032  Sum_probs=26.2

Q ss_pred             EEEEEEECC-EEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCEEEEEEEEEE
Q ss_conf             886554457-799999886740477764323101003679899986331440344440114
Q gi|254781078|r   93 LGHNIQLED-FVFGINCHTTAAKDDSTFYRLKEKYFIYGDVVLKAGYSVDSLLIYGMGGFG  152 (242)
Q Consensus        93 ~GYN~Q~~~-~V~GvE~d~~~~~~~~~~~~~~~k~~~~Gsvr~r~Gya~~~~l~Y~~gG~A  152 (242)
                      -|++.|+.| +++-+..+..+.-.-.   .    ..+.-+++.-++-.++++.-|+.+|+-
T Consensus       127 ~GWd~Qi~ne~~~~l~~e~~~~~~~~---~----~~~~~dl~~~~~~~lGn~~t~~~~G~~  180 (293)
T pfam09982       127 QGWDNQIENEPGFNLSYERARRLFRA---T----DGGGFDLSPFAEAALGNLETYASAGAT  180 (293)
T ss_pred             CCHHHHCCCCEEEEEEEEEEEHHCCC---C----CCCCEEEEEEEEEEEEEEEEEEECCEE
T ss_conf             75387567640899984134001112---6----898589988768996117887524569


No 70 
>pfam11924 DUF3442 Protein of unknown function (DUF3442). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 334 to 948 amino acids in length.
Probab=43.90  E-value=21  Score=15.30  Aligned_cols=67  Identities=16%  Similarity=0.140  Sum_probs=38.5

Q ss_pred             EEEEEEEEE--CCEEEEEE---EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEE
Q ss_conf             899986331--44034444---0114575301100023666655554345565303798731667327876888898887
Q gi|254781078|r  132 VVLKAGYSV--DSLLIYGM---GGFGGAYVIDSSLEKVESDNSKNAKGRFDGHGSSVVLGIGLDYMVNYDISLSASYRYI  206 (242)
Q Consensus       132 vr~r~Gya~--~~~l~Y~~---gG~A~~~~~~~~~~~~~~~~~~~~~~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~  206 (242)
                      -|..-||.+  .-.|||.-   +-+.+.+...+.....         ...+.-+..+.+-.||+|.-.|.+++.+||+..
T Consensus       162 Er~a~G~D~~~~~~lP~~p~lg~~l~yeqy~gd~v~lf---------~~~~~q~~p~a~t~gl~ytP~pllt~~~~~~~~  232 (280)
T pfam11924       162 ERPASGYDLRLGARLPAYPQLGGKLKYEQYYGDNVALF---------GSGNLQKDPHAVTLGLNYTPVPLLTVGADYRDG  232 (280)
T ss_pred             EEECCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCC---------CCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEC
T ss_conf             46359732674244686756674699999765753323---------666555686117998884036877998736806


Q ss_pred             E
Q ss_conf             4
Q gi|254781078|r  207 P  207 (242)
Q Consensus       207 d  207 (242)
                      .
T Consensus       233 ~  233 (280)
T pfam11924       233 K  233 (280)
T ss_pred             C
T ss_conf             8


No 71 
>pfam10677 DUF2490 Protein of unknown function (DUF2490). This is a bacterial family of uncharacterized proteins.
Probab=43.82  E-value=21  Score=15.29  Aligned_cols=31  Identities=29%  Similarity=0.420  Sum_probs=24.2

Q ss_pred             CCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEC
Q ss_conf             34556530379873166732787688889888744
Q gi|254781078|r  174 GRFDGHGSSVVLGIGLDYMVNYDISLSASYRYIPH  208 (242)
Q Consensus       174 ~~~d~t~~G~tvGaGVEYait~nwslraEY~Y~d~  208 (242)
                      ..+|..    -+.+|+.|.+++++++.+-|+|.-.
T Consensus       147 ~~fdqn----R~~~Gl~~~ls~~~~le~gY~~q~~  177 (191)
T pfam10677       147 SGFDQN----RLFAGLGYKLSKNLKLELGYLYQFI  177 (191)
T ss_pred             CCHHHH----HEEEEEEEEECCCCEEEEEEEEEEC
T ss_conf             635250----1205611894899789999889983


No 72 
>pfam07172 GRP Glycine rich protein family. This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses.
Probab=43.05  E-value=5.9  Score=18.34  Aligned_cols=43  Identities=26%  Similarity=0.308  Sum_probs=21.3

Q ss_pred             CCCHHHHHHH--HHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCE
Q ss_conf             2205678888--987436520234332025434575321103303766530
Q gi|254781078|r    5 GYGALFFVVF--LSIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQDDEYGI   53 (242)
Q Consensus         5 ~~~~~~~~~~--~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~   53 (242)
                      .++.||+-++  ..|++.+-+-|+++-.+++.+..      -+++++.+.=
T Consensus         3 SKa~llLglllA~~lLIsSevaa~~ls~~~K~e~e------~~v~~~~~gg   47 (91)
T pfam07172         3 SKALLLLGLLLAAVLLISSEVAAADLSNTEKSESE------NEVQDDKYGG   47 (91)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CCEEECCCCC
T ss_conf             05799999999999999999999997128455542------4021146457


No 73 
>COG2930 Uncharacterized conserved protein [Function unknown]
Probab=42.31  E-value=23  Score=15.16  Aligned_cols=56  Identities=20%  Similarity=0.206  Sum_probs=37.0

Q ss_pred             CEEEEEEEEEEEEEEEEEEECCCCCCC-CCCCCCCCCEEEEEEEEEEEECCEEEEEEEE
Q ss_conf             300005744464410332221455566-6667667550479988655445779999988
Q gi|254781078|r   52 GIWSGNYVGLHISRLYETHPLADTINR-KTYNSLLPNGLGIELGHNIQLEDFVFGINCH  109 (242)
Q Consensus        52 ~~WtG~YiG~~~G~~~~~~~~~d~~~~-~~~n~~~~~g~G~~~GYN~Q~~~~V~GvE~d  109 (242)
                      .+=.||-+|++.|-+--..+..+.++. ..+-...+.++|.|+|.  |...+|+=+..|
T Consensus        62 vLkaGFvigGr~GqGvl~~r~~~nTWs~p~~v~~~g~siG~q~G~--qs~d~v~i~~~~  118 (227)
T COG2930          62 VLKAGFVIGGRYGQGVLVARLPDNTWSAPSFVKMAGASIGGQAGV--QSTDFVIILNTD  118 (227)
T ss_pred             HCEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCCC--EEEEEEEEECCH
T ss_conf             103007885343534787327998744414441105553420242--022289998065


No 74 
>TIGR01778 TonB-copper TonB-dependent copper receptor; InterPro: IPR010100   This entry represents a family of proteobacterial TonB-dependent outer membrane receptor/transporters which bind and translocate copper ions. Two characterised members of this family exist, outer membrane protein C (OprC) from Pseudomonas aeruginosa  and NosA from Pseudomonas stutzeri, which is responsible for providing copper for the copper-containing N2O reductase ..
Probab=40.36  E-value=24  Score=14.98  Aligned_cols=30  Identities=20%  Similarity=0.215  Sum_probs=14.8

Q ss_pred             EEEEEEEEEEEEC-CEEEEEEEEEEEECCCC
Q ss_conf             0479988655445-77999998867404777
Q gi|254781078|r   88 GLGIELGHNIQLE-DFVFGINCHTTAAKDDS  117 (242)
Q Consensus        88 g~G~~~GYN~Q~~-~~V~GvE~d~~~~~~~~  117 (242)
                      .+|+-+|..+||. +|+-++=.-+.|...+.
T Consensus       515 l~GGEa~~~Y~l~~~W~~~~sLAY~~G~N~T  545 (668)
T TIGR01778       515 LLGGEAGLSYQLDEQWKTEASLAYAWGENET  545 (668)
T ss_pred             EECCHHHEEHHCCCCCEEEEEEEEEECCCCC
T ss_conf             3220210001006586120489997133235


No 75 
>PRK11528 hypothetical protein; Provisional
Probab=39.13  E-value=25  Score=14.88  Aligned_cols=30  Identities=13%  Similarity=0.240  Sum_probs=24.6

Q ss_pred             CCEEEEEEEEEEEECCCCEEEEEEEEEEEC
Q ss_conf             530379873166732787688889888744
Q gi|254781078|r  179 HGSSVVLGIGLDYMVNYDISLSASYRYIPH  208 (242)
Q Consensus       179 t~~G~tvGaGVEYait~nwslraEY~Y~d~  208 (242)
                      -+.|.-=++-+=+-.+++|+..+.|||.|.
T Consensus       206 ~~~G~NGa~alwW~~t~~~ttgiqYRYAdN  235 (254)
T PRK11528        206 GKDGINGAVALWWNATKHLTTGIQYRYADN  235 (254)
T ss_pred             CCCCCCCEEEEEEEECCCEEEEEEEEEHHC
T ss_conf             977623538998840576004269980001


No 76 
>pfam04357 DUF490 Family of unknown function (DUF490).
Probab=30.86  E-value=35  Score=14.11  Aligned_cols=15  Identities=40%  Similarity=0.580  Sum_probs=7.2

Q ss_pred             EEEECCCCEEEEEEE
Q ss_conf             667327876888898
Q gi|254781078|r  189 LDYMVNYDISLSASY  203 (242)
Q Consensus       189 VEYait~nwslraEY  203 (242)
                      +||.++++|++++++
T Consensus       319 i~y~l~~~~~l~~~~  333 (349)
T pfam04357       319 LEYRLTPNLSLEASS  333 (349)
T ss_pred             EEEEECCCEEEEEEE
T ss_conf             999976998999999


No 77 
>PRK03761 organic solvent tolerance protein; Provisional
Probab=28.41  E-value=39  Score=13.87  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=10.1

Q ss_pred             EEEEEEEECCCCEEEEEEEEE
Q ss_conf             873166732787688889888
Q gi|254781078|r  185 LGIGLDYMVNYDISLSASYRY  205 (242)
Q Consensus       185 vGaGVEYait~nwslraEY~Y  205 (242)
                      ++.-..|.|+++|++-+.|+|
T Consensus       681 ~~~s~~~pi~~~W~~~g~~~Y  701 (782)
T PRK03761        681 VGAVASWPIADRWSIVGAYYY  701 (782)
T ss_pred             EEEEEEEEECCCEEEEEEEEE
T ss_conf             889999980388899999998


No 78 
>TIGR00459 aspS_bact aspartyl-tRNA synthetase; InterPro: IPR004524   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Aspartyl tRNA synthetase 6.1.1.12 from EC is an alpha2 dimer that belongs to class IIb. Structural analysis combined with mutagenesis and enzymology data on the yeast enzyme point to a tRNA binding process that starts by a recognition event between the tRNA anticodon loop and the synthetase anticodon binding module .     This family represents aspartyl-tRNA synthetases from the bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). ; GO: 0000166 nucleotide binding, 0004815 aspartate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006422 aspartyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=28.03  E-value=14  Score=16.24  Aligned_cols=20  Identities=15%  Similarity=0.189  Sum_probs=13.3

Q ss_pred             ECCCCEEEEEEEEEEECCCC
Q ss_conf             32787688889888744873
Q gi|254781078|r  192 MVNYDISLSASYRYIPHHIH  211 (242)
Q Consensus       192 ait~nwslraEY~Y~d~g~~  211 (242)
                      |.-+.=-+|.+|||+|+=..
T Consensus       126 a~e~~EDvRLkYRYLDLRrp  145 (653)
T TIGR00459       126 AEEEREDVRLKYRYLDLRRP  145 (653)
T ss_pred             CCCCCCCCCCCCCCHHHCCH
T ss_conf             00010166610022220487


No 79 
>PRK03641 hypothetical protein; Provisional
Probab=26.27  E-value=43  Score=13.65  Aligned_cols=30  Identities=23%  Similarity=0.392  Sum_probs=23.2

Q ss_pred             CHHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf             056788889874365202343320254345
Q gi|254781078|r    7 GALFFVVFLSIVVPNHSLAVDLYLPRKIDL   36 (242)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~   36 (242)
                      |..+..|++++++...++|+.|-.|.-+++
T Consensus         2 ~~~~i~~llal~~S~~~~A~tL~lp~~iel   31 (220)
T PRK03641          2 KTGIVTTLLALCLPVSVFATTLRLSPEVDL   31 (220)
T ss_pred             CHHHHHHHHHHHHHHHHHEEEEECCCCEEE
T ss_conf             116999999998623645046647986469


No 80 
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=25.22  E-value=32  Score=14.34  Aligned_cols=11  Identities=27%  Similarity=0.311  Sum_probs=9.0

Q ss_pred             CCEEEEEEEEE
Q ss_conf             53000057444
Q gi|254781078|r   51 YGIWSGNYVGL   61 (242)
Q Consensus        51 ~~~WtG~YiG~   61 (242)
                      ..+|.|||+=-
T Consensus        50 ~~nW~GFYl~~   60 (163)
T COG1956          50 DVNWVGFYLLE   60 (163)
T ss_pred             CCCEEEEEEEE
T ss_conf             87369999940


No 81 
>PRK09840 catecholate siderophore receptor Fiu; Provisional
Probab=24.38  E-value=46  Score=13.45  Aligned_cols=20  Identities=10%  Similarity=-0.044  Sum_probs=14.5

Q ss_pred             EEECCCCEEEEEEEEEEECC
Q ss_conf             67327876888898887448
Q gi|254781078|r  190 DYMVNYDISLSASYRYIPHH  209 (242)
Q Consensus       190 EYait~nwslraEY~Y~d~g  209 (242)
                      .+.++++|++.+-|-|+|..
T Consensus       621 ~~~~~~~~~l~~~yty~da~  640 (760)
T PRK09840        621 AGNITPAWQVIAGYTQQKAT  640 (760)
T ss_pred             EEEECCCEEEEEEEEEEEEE
T ss_conf             87006987999999999779


No 82 
>PRK04517 hypothetical protein; Provisional
Probab=20.39  E-value=54  Score=13.08  Aligned_cols=28  Identities=18%  Similarity=0.375  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHCCCCEEEE-EEECCCCCCC
Q ss_conf             678888987436520234-3320254345
Q gi|254781078|r    9 LFFVVFLSIVVPNHSLAV-DLYLPRKIDL   36 (242)
Q Consensus         9 ~~~~~~~~~~~~~~~~a~-d~~~~~~~~~   36 (242)
                      ...+|+++|+..+.++|+ .|..|+.+++
T Consensus         5 ~~~~~ll~l~~s~sa~A~vtL~lp~~iel   33 (216)
T PRK04517          5 KPLTCLLALAMSGSAFADVTVEVPDDVDL   33 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHCEEECCCCEEE
T ss_conf             79999999997135533207836997779


Done!